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Antibody homology modeling fails after blastp

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Antibody homology modeling fails after blastp

I was following the antibody modeling tutorial on Nature Protocols paper and I wasn’t successful. I followed the tutorial in the Supplementary Material, and got the following error right after performing blastp query. Blast+ was performed well and produced output alright.

libc++abi.dylib: terminating with uncaught exception of type std::out_of_range: basic_string
[1]    37692 abort      $ROSETTA_BIN/antibody.macosclangrelease -fasta antibody.fasta   95  90

Mac OS version: 10.12.3
Rosetta Version: 3.7 (2016.34)
Blast+ version: 2.6.0
LLVM version: 8.0.0 (clang-800.0.42.1)

And, here's the files that I used including log files:

Post Situation: 
Sat, 2017-02-18 11:25

The Antibody team says: 

"[You] need the latest weekly [release], as blast changed their output header format"

Mon, 2017-02-20 07:39

Thanks, I updated Rosetta to 2016.46 and still have the same error message. Or is there a newer build that I'm supposed to use? I'm a commercial user and 2016.46 is the newest build that I'm seeing.

Mon, 2017-02-20 12:49

hmm, that does look like the latest release.  We had a hiccup in the release system but it must not have restarted smoothly.  3.8 is in the works and will be out before too long.  I'll ping the sysadmin.

Tue, 2017-02-21 14:33

Can you let me know what is the latest Rosetta version available? 

Are you one of the author of the manuscript ( I'd like to know what version of Rosetta and blastp was used, but unable to find such information in the manuscript.


Thu, 2017-02-23 10:09

The problem that's been holding up releases has been resolved.  It's looking likely we will process one this Friday.  (Well, we'll definitely process one, it has a good chance of passing the automated tests).  


Thu, 2017-02-23 10:54

A new weekly is up, give it a try.

Sun, 2017-02-26 09:27

Thanks, I updated to vesion 2017.8 and the protocol started working.


Mon, 2017-02-27 11:02