I have been trying to built a model using Rosetta 3.4 but it fails with "no more batches to process... ". No output is produced or any other errors (Except a warning about missing OXT residue at the termini). I have attached the log file, part of the .aln file and the flag file that I have been using.
As I can see from log, it recognizes the input pdb, the fragment libraries.. I might have a problem with the alignment file as the input format was not exactly clear to me. Other then that I have no clue what could be my mistake. I have checked the manual and a tutorial when I constructed the flags file.
Any help is appreciated.