when rescoring docked poses one obtains rather different scores. If I understand earlier posts correctly, the results from the 'score.xxx' application should be more suitable to distinguish the quality of docking results for different proteins than the docking score? (Please say yes ... ;-) Or would be 'relax.xxx' a better choice? I am trying to compare docking runs of slightly different peptides of identical length to the same target.
Is there maybe a good overview for the different scores used in the various applications that I did not find yet? (Except for the table of energy contributions or the list of options from the online manual. An overview which application uses which scheme and how they are composed.)
Do the scoring schemes differ only in weights or also in e.g. applied normalizations?