I want to use Fold and Dock on a small domain of a protein that forms a dimer-of-dimers. It is a 50 residue domain that is known to form helixes.
I am not able to get a reasonable quaternary structure for this protein using the below symm files. Any help would be deeply appreciated. Thanks!
set_dof BASEJUMP angle_x(0:360) angle_y(0:360) angle_z(0:360)
set_dof JUMP2 angle_z(0:90)