I have a silent file containing the structures from a RNA de novo run. I have been able to extract the pdbs using the rna_extract application, but I'm unable to extract scorefiles, no matter what flags I use, it just extracts the PDB files with no scores in them. I would like to know which is the right application/flag to use, or if there's any simple console command to get the structures in an order according to increasing total energy.
So far I have tried:
rna_extract.exe -out:file:scores_only -database ./rosetta_database -in:file:silent myfile.silent
rna_extract.exe -out:file:scorefile -database ./rosetta_database -in:file:silent myfile.silent
And a bunch of things with the score application that didn't work.