I'm doing my thesis about Protein Design using a ASP solver. My area is Informatic, so i don't understand many things about proteins.
For my work i have a fixed backbone and i have to do a asp program that determine the optimum set of rotamers for that backbone.
I need to have a energy table with all energies for all possible rotamers.
I think that rosetta might help me, but i can't exactly figure it out how i do it.
I've already installed rosetta.
Is it possible to use rosetta to calculate energies for all possible rotamers? If yes, can someone tell me what application should i use and give me an exemple of a comand line to use it?
Thank you very much.
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Energy calculation for protein design