Trying something like the following in C++ Rosetta 3.3:
P = new core::pose::Pose();
Q = new core::pose::Pose();
for(size_t k=1; k<=P.n_residue(); k++)
I realize that I could be setting conformations, poses, etc, directly, but more generally I'm wondering what needs to be updated to get correct scoring in such cases?
use_nblist is false...