I'm new to rosetta peptide docking. Currently, I want to dock a peptide into protein using Flexpep docking. But there is a phosphorylation in my peptide and when I use "-remember_unrecognized_res" flags, after docking the peptide is discontinuous at the phosphorylation site. Anyone knows how to solve this problem?
Thanks in advance.
You are here
flexpep docking problem-----How to do with phosphorylation peptide?