How to build a parallel version of rosetta++(Rosetta 2.3.0)???

Hi Rosetta users,

I'm using Rosetta 2.3.0. I want to build a parallel version. I installed MPICH and scons and modified some lines of basic.setting which is in rosetta++/tools/build/. I added the mpi bin, include amd lib path to the file and added a flag "Wno-long-long" to make mpicc and mpiCC work (since the cpmpiler always complains about that it doesn't support 'long long' type). I also installed the rsh-version and configured it to make the work.

My PC is a HP laptop (1 intel CORE2 cpu, 2 cores); my OS is Ret Hat Enterprise Linux 5.4; scons works fine when building a normal version rosetta++; mpich 1.2.7 is used; rsh-server-0.17-40.el5.i386.rpm is used (I created a file named hosts.equiv in /etc/, and put a line "localhost" in it. In the end, I reboot the rsh service).

#########################

scons ./bin mode=relese extras=mpi

#########################

Finally, I got a parallel version rosetta. After that, I tested the parallel version, like this:

(A)
mpirun -np 3 /home/knight/softwares/Rosetta-2.3.0/rosetta++/bin/rosetta.release -interface -decoystats -ds_outpdb_only -mutlist sample_mutlist_all -s sample.pdb

OR like this

(B)
mpirun -np 3 /home/knight/softwares/Rosetta-2.3.0/rosetta++/bin/rosetta.release -mpi_task_distribution -interface -decoystats -ds_outpdb_only -mutlist sample_mutlist_all -s sample.pdb

I found 3 rosetta.release processes at once, however, only one of them left after a short while. In (A), only the server node left; in (B), only the last node, i.e. here, the client 2 left to run. Below are parts of my log files (I also put them in a the attachments, however, you've to rename them after downloading and to unzip them.).

Anybody can tell me how I can fix these? I relly need Rosetta 2.3.0 to run in parallel. Thanks in advance!!!

Ming Liu, Ph.D from Beijing, China

###################################
Log files !!!!!!!!!!!!!!!!

####################### The server node ####################
####################### This log file was gererated by calling the command (B) ############################
this node is the server
command executed: /home/knight/softwares/Rosetta-2.3.0/rosetta++/bin/rosetta.release -mpi_task_distribution -interface -decoystats -ds_outpdb_only -mutlist sample_mutlist_all -s sample.pdb
[T/F OPT]Default FALSE value for [-no_option_display]
[T/F OPT]Default FALSE value for [-args_file]
[STR OPT]Default value for [-paths] paths.txt.
[T/F OPT]Default FALSE value for [-version]
[T/F OPT]Default FALSE value for [-score]
[T/F OPT]Default FALSE value for [-abinitio]
[T/F OPT]Default FALSE value for [-refine]
[T/F OPT]Default FALSE value for [-assemble]
[T/F OPT]Default FALSE value for [-idealize]
[T/F OPT]Default FALSE value for [-relax]
[T/F OPT]Default FALSE value for [-abrelax]
[T/F OPT]Default FALSE value for [-abrelax_mode]
[T/F OPT]Default FALSE value for [-design]
[T/F OPT]Default FALSE value for [-dock]
[T/F OPT]Default FALSE value for [-membrane]
[T/F OPT]Default FALSE value for [-loops]
[T/F OPT]Default FALSE value for [-pdbstats]
[T/F OPT]New TRUE value for [-interface]
[T/F OPT]Default FALSE value for [-fake_native]
[T/F OPT]Default FALSE value for [-docking_hb_stats]
[T/F OPT]Default FALSE value for [-output_position_hetatm]
[T/F OPT]Default FALSE value for [-ddg_bind_only]
[STR OPT]New value for [-mutlist] sample_mutlist_all.
[STR OPT]Default value for [-intout] INT.OUT.
[T/F OPT]Default FALSE value for [-Wpack_only]
[T/F OPT]Default FALSE value for [-Wint_only]
[T/F OPT]Default FALSE value for [-pmut_scan]
[T/F OPT]Default FALSE value for [-affin_incr]
[T/F OPT]Default FALSE value for [-ala_scan_only]
[T/F OPT]Default FALSE value for [-monomeric_protein]
[T/F OPT]Default FALSE value for [-safe]
[T/F OPT]Default FALSE value for [-output_structure]
[T/F OPT]Default FALSE value for [-repack_neighbors]
[T/F OPT]Default FALSE value for [-min_interface]
[T/F OPT]Default FALSE value for [-relax_unbound]
[T/F OPT]Default FALSE value for [-alter_spec_format]
[T/F OPT]Default FALSE value for [-chain_energies]
Rosetta mode: interface
[T/F OPT]Default FALSE value for [-chain]
[T/F OPT]Default FALSE value for [-protein]
[T/F OPT]Default FALSE value for [-series]
[INT OPT]Default value for [-nstruct] 1
[T/F OPT]Default FALSE value for [-concatenate_pdbs]
[T/F OPT]Default FALSE value for [-single_silent_writer]
[T/F OPT]Default FALSE value for [-read_all_chains]
[T/F OPT]Default FALSE value for [-preserve_header]
[T/F OPT]Default FALSE value for [-use_pdb_numbering]
[T/F OPT]Default FALSE value for [-flip_symmetric_sidechains]
[T/F OPT]Default FALSE value for [-repack]
[T/F OPT]Default FALSE value for [-no_optH]
[T/F OPT]Default FALSE value for [-overwrite]
[T/F OPT]Default FALSE value for [-output_pdb_gz]
[T/F OPT]Default FALSE value for [-output_silent_gz]
[T/F OPT]Default FALSE value for [-output_scorefile_gz]
[T/F OPT]Default FALSE value for [-pose_silent_out]
[T/F OPT]Default FALSE value for [-sasapack_bvalues]
[T/F OPT]Default FALSE value for [-cenlist_values]
[T/F OPT]Default FALSE value for [-termini]
[T/F OPT]Default FALSE value for [-Nterminus]
[T/F OPT]Default FALSE value for [-Cterminus]
[T/F OPT]Default FALSE value for [-use_trie]
[T/F OPT]Default FALSE value for [-no_trie]
[T/F OPT]Default FALSE value for [-use_conformer]
[T/F OPT]Default FALSE value for [-use_bbind_conformer]
[T/F OPT]Default FALSE value for [-trials_trie]
[T/F OPT]Default FALSE value for [-no_trials_trie]
[T/F OPT]Default FALSE value for [-pose_relax]
[T/F OPT]Default FALSE value for [-output_interaction_graph_memory_usage]
[T/F OPT]Default FALSE value for [-read_interaction_graph]
[T/F OPT]Default FALSE value for [-write_interaction_graph]
[STR OPT]Default value for [-ig_file] .
[T/F OPT]Default FALSE value for [-packer_precompute_only]
[T/F OPT]Default FALSE value for [-tight_memory_restrictions]
[T/F OPT]Default FALSE value for [-lazy_ig]
[T/F OPT]Default FALSE value for [-linmem_ig]
[T/F OPT]Default FALSE value for [-minimalist_ig]
[T/F OPT]Default FALSE value for [-use_sasa_pack_score]
[T/F OPT]Default FALSE value for [-output_dot_kinemage]
[T/F OPT]Default FALSE value for [-pack_low_temp_annealing]
[T/F OPT]Default FALSE value for [-multi_cool_annealer]
[T/F OPT]Default FALSE value for [-debug_annealer_design]
[T/F OPT]Default FALSE value for [-no_his_his_pairE]
[T/F OPT]Default FALSE value for [-silent_input]
[T/F OPT]Default FALSE value for [-skip_scorefile_check]
[T/F OPT]Default FALSE value for [-timer]
[T/F OPT]Default FALSE value for [-count_attempts]
[T/F OPT]Default FALSE value for [-status]
[T/F OPT]Default FALSE value for [-decoy_status]
[T/F OPT]Default FALSE value for [-ise_movie]
[T/F OPT]Default FALSE value for [-output_all]
[T/F OPT]Default FALSE value for [-output_chi_silent]
[T/F OPT]Default FALSE value for [-accept_all]
[T/F OPT]Default FALSE value for [-skip_missing_residues]
[T/F OPT]Default FALSE value for [-use_input_sc]
[T/F OPT]Default FALSE value for [-use_input_cb]
[STR OPT]Default value for [-weightfile] none.
[STR OPT]Default value for [-cst] cst.
[STR OPT]Default value for [-dpl] dpl.
[STR OPT]Default value for [-resfile] none.
[STR OPT]Default value for [-equiv_resfile] none.
[T/F OPT]Default FALSE value for [-auto_resfile]
[T/F OPT]Default FALSE value for [-chain_inc]
WARNING::
constraints will not be used: query not defined
by series_code,protein_name,and chain_id
WARNING:: nstruct > 0 but output_coord F
no pdb files will be output
[T/F OPT]Default FALSE value for [-full_filename]
[T/F OPT]Default FALSE value for [-map_sequence]
[INT OPT]Default value for [-max_frags] 200
[T/F OPT]Default FALSE value for [-output_centroids]
[STR OPT]Default value for [-protein_name_prefix] .
[STR OPT]Default value for [-frags_name_prefix] .
[T/F OPT]Default FALSE value for [-protein_name_prefix_homolog]
[T/F OPT]Default FALSE value for [-use_homolog_env_stats]
[T/F OPT]Default FALSE value for [-use_homolog_pair_stats]
[T/F OPT]Default FALSE value for [-use_homolog_cendist_stats]
[T/F OPT]Default FALSE value for [-use_homolog_env_stats_in_farlx]
[T/F OPT]Default FALSE value for [-use_homolog_pair_stats_in_farlx]
[T/F OPT]Default FALSE value for [-use_homolog_cendist_stats_in_farlx]
[T/F OPT]Default FALSE value for [-output_hbond_info]
[T/F OPT]Default FALSE value for [-output_interface_hbonds_only]
[T/F OPT]Default FALSE value for [-monomer_input]
[REAL OPT]Default value for [-vdw_reweight] 1
[REAL OPT]Default value for [-env_reweight] 1
[REAL OPT]Default value for [-pair_reweight] 1
[REAL OPT]Default value for [-cb_reweight] 1
[REAL OPT]Default value for [-sheet_reweight] 1
[REAL OPT]Default value for [-ss_reweight] 1
[REAL OPT]Default value for [-hs_reweight] 1
[REAL OPT]Default value for [-rsigma_reweight] 1
[REAL OPT]Default value for [-rg_reweight] 1
[REAL OPT]Default value for [-pc_reweight] 1
[REAL OPT]Default value for [-fa_atr_reweight] 1
[REAL OPT]Default value for [-fa_rep_reweight] 1
[REAL OPT]Default value for [-fa_dun_reweight ] 1
[REAL OPT]Default value for [-fa_pair_reweight] 1
[REAL OPT]Default value for [-fa_plane_reweight] 1
[REAL OPT]Default value for [-fa_solv_reweight] 1
[REAL OPT]Default value for [-fa_ref_reweight ] 1
[REAL OPT]Default value for [-fa_pH_reweight] 1
[REAL OPT]Default value for [-fa_h2o_reweight] 1
[REAL OPT]Default value for [-fa_prob1b_reweight] 1
[REAL OPT]Default value for [-fa_gb_elec_reweigh] 1
[REAL OPT]Default value for [-hb_srbb_reweight] 1
[REAL OPT]Default value for [-hb_lrbb_reweight] 1
[REAL OPT]Default value for [-hb_sc_reweight] 1
[REAL OPT]Default value for [-chainbreak_reweight] 1
[REAL OPT]Default value for [-electron_density_reweight] 1
[REAL OPT]Default value for [-dummy_model_reweight] 1
[REAL OPT]Default value for [-saxs_model_reweight] 1
[REAL OPT]Default value for [-Wplane_total] 0
[REAL OPT]Default value for [-barcode_reweight] 1
[REAL OPT]Default value for [-barcode_energy_reweight] 1
[T/F OPT]Default FALSE value for [-fa_max_dis]
[T/F OPT]Default FALSE value for [-hydrogen_interaction_cutoff]
[T/F OPT]Default FALSE value for [-no_hb_env_dep]
[T/F OPT]Default FALSE value for [-find_disulf]
[T/F OPT]Default FALSE value for [-fix_disulf]
[T/F OPT]Default FALSE value for [-prna]
[T/F OPT]Default FALSE value for [-enable_dna]
[T/F OPT]Default FALSE value for [-enable_rna]
[T/F OPT]Default FALSE value for [-dna_interface]
[T/F OPT]Default FALSE value for [-enable_ligand_aa]
[T/F OPT]Default FALSE value for [-phospho_ser]
[T/F OPT]Default FALSE value for [-surface]
[T/F OPT]Default FALSE value for [-loops]
[T/F OPT]Default FALSE value for [-taboo]
[T/F OPT]Default FALSE value for [-vary_omega]
[T/F OPT]Default FALSE value for [-fine_hb_categories]
[T/F OPT]Default FALSE value for [-geometric_sol]
[T/F OPT]Default FALSE value for [-ex1]
[T/F OPT]Default FALSE value for [-ex2]
[T/F OPT]Default FALSE value for [-ex3]
[T/F OPT]Default FALSE value for [-ex4]
[T/F OPT]Default FALSE value for [-ex1aro]
[T/F OPT]Default FALSE value for [-ex1aro_half]
[T/F OPT]Default FALSE value for [-ex2aro_only]
[T/F OPT]Default FALSE value for [-ex1aro_exposed]
[T/F OPT]Default FALSE value for [-ex2aro_exposed]
[T/F OPT]Default FALSE value for [-exOH]
[INT OPT]Default value for [-extrachi_cutoff] 18
[T/F OPT]Default FALSE value for [-rot_pert]
[T/F OPT]Default FALSE value for [-rot_pert_input]
[T/F OPT]Default FALSE value for [-exdb]
[T/F OPT]Default FALSE value for [-rotamer_explosion]
[T/F OPT]Default FALSE value for [-min_best_rots]
[T/F OPT]Default FALSE value for [-rot_opt]
[T/F OPT]Default FALSE value for [-use_electrostatic_repulsion]
[T/F OPT]Default FALSE value for [-explicit_h2o]
[T/F OPT]Default FALSE value for [-solvate]
[T/F OPT]Default FALSE value for [-pH]
[T/F OPT]Default FALSE value for [-try_both_his_tautomers]
[T/F OPT]Default FALSE value for [-hydrate_dna]
[T/F OPT]Default FALSE value for [-ex_dna_waters]
[T/F OPT]Default FALSE value for [-minimize_rot]
[T/F OPT]Default FALSE value for [-read_hetero_h2o]
[T/F OPT]Default FALSE value for [-Wint_score_only]
[T/F OPT]Default FALSE value for [-Wint_repack_only]
[T/F OPT]Default FALSE value for [-ligand]
[T/F OPT]Default FALSE value for [-enzyme_design]
[T/F OPT]Default FALSE value for [-score_contact_flag]
[T/F OPT]Default FALSE value for [-score_contact_weight]
[T/F OPT]Default FALSE value for [-score_contact_threshold]
[T/F OPT]Default FALSE value for [-scorefxn]
default centroid scorefxn: 4
default fullatom scorefxn: 12
[INT OPT]Default value for [-run_level] 0
[T/F OPT]Default FALSE value for [-silent]
[T/F OPT]Default FALSE value for [-output_silent_gz]
[T/F OPT]Default FALSE value for [-verbose]
[T/F OPT]Default FALSE value for [-gush]
[T/F OPT]Default FALSE value for [-yap]
[T/F OPT]Default FALSE value for [-chat]
[T/F OPT]Default FALSE value for [-inform]
[T/F OPT]Default FALSE value for [-quiet]
run level: 0
[T/F OPT]Default FALSE value for [-benchmark]
[T/F OPT]Default FALSE value for [-debug]
[INT OPT]Default value for [-sym_des_units] 1
[T/F OPT]Default FALSE value for [-mj_min]
[REAL OPT]Default value for [-mod_hhrep_height] 1
[REAL OPT]Default value for [-mod_hhrep_width] 1
[REAL OPT]Default value for [-mod_hhrep_center] 2.79999995
[REAL OPT]Default value for [-mod_hhrep_exponent] 4
[REAL OPT]Default value for [-smooth_etable_ljweight] 1.15999997
[REAL OPT]Default value for [-smooth_etable_solvweight] 1.5
[STR OPT]New value for [-s] sample.pdb.
Starting structure: sample
Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/Rama_smooth_dyn.dat_ss_6.4
Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/phi.theta.36.HS.resmooth
Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/phi.theta.36.SS.resmooth
[STR OPT]Default value for [-atom_vdw_set] default.
[T/F OPT]Default FALSE value for [-IUPAC]
Atom_mode set to all
[STR OPT]Default value for [-paircutoffs] paircutoffs.
Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/paircutoffs
[T/F OPT]Default FALSE value for [-interface_ds]
[T/F OPT]New TRUE value for [-decoystats]
set_decoystats_flag: from,to F T
[T/F OPT]New TRUE value for [-ds_outpdb_only]
[T/F OPT]Default FALSE value for [-tight_core_analysis]
[T/F OPT]Default FALSE value for [-decoyfeatures]
[T/F OPT]Default FALSE value for [-t32s3]
[T/F OPT]Default FALSE value for [-evolution]
[T/F OPT]Default FALSE value for [-evol_recomb]
[T/F OPT]Default FALSE value for [-profile]
[T/F OPT]Default FALSE value for [-constant_seed]
[T/F OPT]Default FALSE value for [-dummy_model]
[T/F OPT]Default FALSE value for [-saxs_model]
Profile defined from q = 0 to 1.
[T/F OPT]Default FALSE value for [-new_centroid_packing]
[REAL OPT]Default value for [-centroid_pack_weight] 2
[T/F OPT]Default FALSE value for [-separate_centroid_pack_score]
[REAL OPT]Default value for [-cb_weight] 1
[REAL OPT]Default value for [-localstrandpair_penalty] 0
[REAL OPT]Default value for [-rsd_wt_helix] 1
[REAL OPT]Default value for [-rsd_wt_loop] 1
[REAL OPT]Default value for [-rsd_wt_strand] 1
[REAL OPT]Default value for [-strand_dist_cutoff] 6.5
[T/F OPT]Default FALSE value for [-stretch_strand_dist_cutoff]
[REAL OPT]Default value for [-seq_sep_scale] 20
[REAL OPT]Default value for [-max_strand_dist_cutoff] 12
[T/F OPT]Default FALSE value for [-ignore_sspair_barcode_in_score]
[T/F OPT]Default FALSE value for [-handedness_score]
[T/F OPT]Default FALSE value for [-barcode_mode]
disabling all filters
[REAL OPT]Default value for [-co] -1
[REAL OPT]Default value for [-rms] -1
[T/F OPT]Default FALSE value for [-repeatin]
[T/F OPT]Default FALSE value for [-repeatout]
[T/F OPT]Default FALSE value for [-clnt]
[T/F OPT]Default FALSE value for [-constant_seed]
reading starting structure: ./sample.pdb
[T/F OPT]Default FALSE value for [-use_native_centroid]
initializing full atom functions
[T/F OPT]Default FALSE value for [-dna_weights]
[T/F OPT]Default FALSE value for [-soft_rep]
[T/F OPT]Default FALSE value for [-soft_rep_design]
[T/F OPT]Default FALSE value for [-use_aw]
[T/F OPT]Default FALSE value for [-use_bw]
[T/F OPT]Default FALSE value for [-use_packing_etables_always]
[T/F OPT]Default FALSE value for [-smooth_etable]
[T/F OPT]Default FALSE value for [-reduce_templates]
[T/F OPT]Default FALSE value for [-gen_born]
[T/F OPT]Default FALSE value for [-small_radii]
[STR OPT]Default value for [-fa_lj_rep_slope] highres.
Starting energy table calculation
Energy table parameter set: polh_aroh Revision: 14003 Date: 2007-04-06 14:24:40 -0400 (Fri, 06 Apr 2007)
[T/F OPT]Default FALSE value for [-mod_hhrep]
Finished calculating energy tables.
[T/F OPT]Default FALSE value for [-mod_etable]
[T/F OPT]Default FALSE value for [-input_etables]
[T/F OPT]Default FALSE value for [-output_etables]
Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/bbdep02.May.sortlib
Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/plane_data_table_1015.dat
Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/pdbpairstats_fine
Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/Paa
Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/Paa_n
Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/Paa_pp
Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/avgE_from_pdb
Filling missing atoms
optimizing missing atoms
[T/F OPT]Default FALSE value for [-disallow_hbond_o4star]
[T/F OPT]Default FALSE value for [-disallow_hbond_ho2star]
Instantiating PDInteractionGraph
optimizing hydrogen positions
[T/F OPT]Default FALSE value for [-dun_sd_correction]
Instantiating PDInteractionGraph
[T/F OPT]Default FALSE value for [-simple_elec]
[T/F OPT]Default FALSE value for [-record_annealer_trajectory]
[T/F OPT]Default FALSE value for [-disallow_quench]
WARNING:: end of pdb file reached: angle, secstruct, & res info not found
Looking for dssp file: ./sample.dssp
dssp file not found
Looking for secondary structure assignment file: ./sample.ssa
ssa file not found
calculating secondary structure from torsion angles
calculating secondary structure from internal DSSP calculation.
[T/F OPT]Default FALSE value for [-use_input_bond]
[T/F OPT]Default FALSE value for [-regions]
Docking partners detected: Residues
1- 222
223- 358
----------------------------------------------

Docking partners: Residues
1-222
223-358

Centroids:
( 29.562, 23.955, 18.127)
( 12.007, 19.613, 43.600)

Centroid bond:
( 17.555, 4.342, -25.473)

Docking basis vectors:
( 0.562, 0.139, -0.815)
( 0.827, -0.094, 0.554)
( 0.000, -0.986, -0.168)
Contact point:
( 20.784, 21.784, 30.864)

----------------------------------------------
File: ./----.cst not found
Running without site constraints
File: ./----.dst not found
Running without dist constraints
[T/F OPT]Default FALSE value for [-apply_filters]
[T/F OPT]Default FALSE value for [-knot_filter]
[T/F OPT]Default FALSE value for [-poke_filter]
[T/F OPT]Default FALSE value for [-score_contact_fullatom]
[T/F OPT]Default FALSE value for [-long_range_hb_weight]
[T/F OPT]Default FALSE value for [-short_range_hb_weight]
[T/F OPT]Default FALSE value for [-rand_envpair_res_wt]
[REAL OPT]Default value for [-parallel_weight] 1
[REAL OPT]Default value for [-antiparallel_weight] 1
[T/F OPT]Default FALSE value for [-rand_SS_wt]
[T/F OPT]Default FALSE value for [-random_parallel_antiparallel]
[T/F OPT]Default FALSE value for [-rand_cst_res_wt]
[T/F OPT]Default FALSE value for [-use_barcode_to_score]
[T/F OPT]Default FALSE value for [-ss_vdw]
[T/F OPT]Default FALSE value for [-use_alpha_rama]
[T/F OPT]Default FALSE value for [-saxs_model_score]
[T/F OPT]Default FALSE value for [-ssweight_for_homolog]
Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/SASA-masks.dat
Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/SASA-angles.dat
========================================
Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/sasa_offsets.txt
Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/sasa_prob_cdf.txt
[T/F OPT]Default FALSE value for [-t32s3]
PACKNG: deleting curent protein_sasa oject
[T/F OPT]Default FALSE value for [-packing_heavy_atoms_only]
[T/F OPT]Default FALSE value for [-output_input_pdb]
[T/F OPT]Default FALSE value for [-movie]
[T/F OPT]Default FALSE value for [-trajectory]
initializing full atom coordinates
Protein Complex defined as Residues 1- 222 and 223- 358
[T/F OPT]Default FALSE value for [-set_interface_cutoff]
STARTING DECOYSTATS PARTNER COMPLEX AB:
STARTING DECOYSTATS PARTNER B:
STARTING DECOYSTATS PARTNER A:
interface mode, reading mutlist: sample_mutlist_all
interface mode, found number of mutated structures: 680
examining mutant # 1
[T/F OPT]Default FALSE value for [-pack_bump_cutoff]
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 2
designing with this many rotamers 8
Instantiating PDInteractionGraph
examining mutant # 3
designing with this many rotamers 15
Instantiating PDInteractionGraph
examining mutant # 4
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 5
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 6
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 7
designing with this many rotamers 22
Instantiating PDInteractionGraph
examining mutant # 8
designing with this many rotamers 5
Instantiating PDInteractionGraph
examining mutant # 9
designing with this many rotamers 11
Instantiating PDInteractionGraph
examining mutant # 10
designing with this many rotamers 11
Instantiating PDInteractionGraph
examining mutant # 11
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 12
designing with this many rotamers 18
Instantiating PDInteractionGraph
examining mutant # 13
designing with this many rotamers 26
Instantiating PDInteractionGraph
examining mutant # 14
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 15
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 16
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 17
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 18
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 19
designing with this many rotamers 7
Instantiating PDInteractionGraph
examining mutant # 20
designing with this many rotamers 11
Instantiating PDInteractionGraph
examining mutant # 21
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 22
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 23
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 24
designing with this many rotamers 11
Instantiating PDInteractionGraph
examining mutant # 25
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 26
designing with this many rotamers 7
Instantiating PDInteractionGraph
examining mutant # 27
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 28
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 29
designing with this many rotamers 8
Instantiating PDInteractionGraph
examining mutant # 30
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 31
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 32
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 33
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 34
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 35
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 36
designing with this many rotamers 20
Instantiating PDInteractionGraph
examining mutant # 37
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 38
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 39
designing with this many rotamers 5
Instantiating PDInteractionGraph
examining mutant # 40
designing with this many rotamers 25
Instantiating PDInteractionGraph
examining mutant # 41
designing with this many rotamers 5
Instantiating PDInteractionGraph
examining mutant # 42
designing with this many rotamers 13
Instantiating PDInteractionGraph
examining mutant # 43
designing with this many rotamers 12
Instantiating PDInteractionGraph
examining mutant # 44
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 45
designing with this many rotamers 19
Instantiating PDInteractionGraph
examining mutant # 46
designing with this many rotamers 21
Instantiating PDInteractionGraph
examining mutant # 47
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 48
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 49
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 50
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 51
designing with this many rotamers 8
Instantiating PDInteractionGraph
examining mutant # 52
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 53
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 54
designing with this many rotamers 11
Instantiating PDInteractionGraph
examining mutant # 55
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 56
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 57
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 58
designing with this many rotamers 20
Instantiating PDInteractionGraph
examining mutant # 59
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 60
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 61
designing with this many rotamers 12
Instantiating PDInteractionGraph
examining mutant # 62
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 63
designing with this many rotamers 10
Instantiating PDInteractionGraph
examining mutant # 64
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 65
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 66
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 67
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 68
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 69
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 70
designing with this many rotamers 7
Instantiating PDInteractionGraph
examining mutant # 71
designing with this many rotamers 8
Instantiating PDInteractionGraph
examining mutant # 72
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 73
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 74
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 75
designing with this many rotamers 16
Instantiating PDInteractionGraph
examining mutant # 76
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 77
designing with this many rotamers 7
Instantiating PDInteractionGraph
examining mutant # 78
designing with this many rotamers 11
Instantiating PDInteractionGraph
examining mutant # 79
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 80
designing with this many rotamers 11
Instantiating PDInteractionGraph
examining mutant # 81
designing with this many rotamers 10
Instantiating PDInteractionGraph
examining mutant # 82
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 83
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 84
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 85
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 86
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 87
designing with this many rotamers 7
Instantiating PDInteractionGraph
examining mutant # 88
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 89
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 90
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 91
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 92
designing with this many rotamers 16
Instantiating PDInteractionGraph
examining mutant # 93
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 94
designing with this many rotamers 8
Instantiating PDInteractionGraph
examining mutant # 95
designing with this many rotamers 11
Instantiating PDInteractionGraph
examining mutant # 96
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 97
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 98
designing with this many rotamers 10
Instantiating PDInteractionGraph
examining mutant # 99
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 100
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 101
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 102
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 103
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 104
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 105
designing with this many rotamers 13
Instantiating PDInteractionGraph
examining mutant # 106
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 107
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 108
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 109
designing with this many rotamers 21
Instantiating PDInteractionGraph
examining mutant # 110
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 111
designing with this many rotamers 11
Instantiating PDInteractionGraph
examining mutant # 112
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 113
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 114
designing with this many rotamers 12
Instantiating PDInteractionGraph
examining mutant # 115
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 116
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 117
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 118
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 119
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 120
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 121
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 122
designing with this many rotamers 7
Instantiating PDInteractionGraph
examining mutant # 123
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 124
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 125
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 126
designing with this many rotamers 5
Instantiating PDInteractionGraph
examining mutant # 127
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 128
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 129
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 130
designing with this many rotamers 7
Instantiating PDInteractionGraph
examining mutant # 131
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 132
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 133
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 134
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 135
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 136
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 137
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 138
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 139
designing with this many rotamers 19
Instantiating PDInteractionGraph
examining mutant # 140
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 141
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 142
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 143
designing with this many rotamers 20
Instantiating PDInteractionGraph
examining mutant # 144
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 145
designing with this many rotamers 10
Instantiating PDInteractionGraph
examining mutant # 146
designing with this many rotamers 13
Instantiating PDInteractionGraph
examining mutant # 147
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 148
designing with this many rotamers 19
Instantiating PDInteractionGraph
examining mutant # 149
designing with this many rotamers 12
Instantiating PDInteractionGraph
examining mutant # 150
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 151
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 152
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 153
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 154
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 155
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 156
designing with this many rotamers 22
Instantiating PDInteractionGraph
examining mutant # 157
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 158
designing with this many rotamers 5
Instantiating PDInteractionGraph
examining mutant # 159
designing with this many rotamers 7
Instantiating PDInteractionGraph
examining mutant # 160
designing with this many rotamers 25
Instantiating PDInteractionGraph
examining mutant # 161
designing with this many rotamers 13
Instantiating PDInteractionGraph
examining mutant # 162
designing with this many rotamers 14
Instantiating PDInteractionGraph
examining mutant # 163
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 164
designing with this many rotamers 21
Instantiating PDInteractionGraph
examining mutant # 165
designing with this many rotamers 18
Instantiating PDInteractionGraph
examining mutant # 166
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 167
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 168
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 169
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 170
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 171
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 172
designing with this many rotamers 8
Instantiating PDInteractionGraph
examining mutant # 173
designing with this many rotamers 14
Instantiating PDInteractionGraph
examining mutant # 174
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 175
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 176
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 177
designing with this many rotamers 18
Instantiating PDInteractionGraph
examining mutant # 178
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 179
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 180
designing with this many rotamers 12
Instantiating PDInteractionGraph
examining mutant # 181
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 182
designing with this many rotamers 16
Instantiating PDInteractionGraph
examining mutant # 183
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 184
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 185
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 186
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 187
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 188
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 189
designing with this many rotamers 8
Instantiating PDInteractionGraph
examining mutant # 190
designing with this many rotamers 10
Instantiating PDInteractionGraph
examining mutant # 191
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 192
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 193
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 194
designing with this many rotamers 15
Instantiating PDInteractionGraph
examining mutant # 195
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 196
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 197
designing with this many rotamers 11
Instantiating PDInteractionGraph
examining mutant # 198
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 199
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 200
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 201
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 202
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 203
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 204
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 205
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 206
designing with this many rotamers 8
Instantiating PDInteractionGraph
examining mutant # 207
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 208
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 209
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 210
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 211
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 212
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 213
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 214
designing with this many rotamers 11
Instantiating PDInteractionGraph
examining mutant # 215
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 216
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 217
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 218
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 219
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 220
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 221
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 222
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 223
designing with this many rotamers 18
Instantiating PDInteractionGraph
examining mutant # 224
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 225
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 226
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 227
designing with this many rotamers 19
Instantiating PDInteractionGraph
examining mutant # 228
designing with this many rotamers 5
Instantiating PDInteractionGraph
examining mutant # 229
designing with this many rotamers 10
Instantiating PDInteractionGraph
examining mutant # 230
designing with this many rotamers 15
Instantiating PDInteractionGraph
examining mutant # 231
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 232
designing with this many rotamers 17
Instantiating PDInteractionGraph
examining mutant # 233
designing with this many rotamers 14
Instantiating PDInteractionGraph
examining mutant # 234
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 235
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 236
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 237
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 238
designing with this many rotamers 8
Instantiating PDInteractionGraph
examining mutant # 239
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 240
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 241
designing with this many rotamers 13
Instantiating PDInteractionGraph
examining mutant # 242
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 243
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 244
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 245
designing with this many rotamers 18
Instantiating PDInteractionGraph
examining mutant # 246
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 247
designing with this many rotamers 10
Instantiating PDInteractionGraph
examining mutant # 248
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 249
designing with this many rotamers 12
Instantiating PDInteractionGraph
examining mutant # 250
designing with this many rotamers 19
Instantiating PDInteractionGraph
examining mutant # 251
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 252
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 253
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 254
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 255
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 256
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 257
designing with this many rotamers 7
Instantiating PDInteractionGraph
examining mutant # 258
designing with this many rotamers 19
Instantiating PDInteractionGraph
examining mutant # 259
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 260
designing with this many rotamers 7
Instantiating PDInteractionGraph
examining mutant # 261
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 262
designing with this many rotamers 33
Instantiating PDInteractionGraph
examining mutant # 263
designing with this many rotamers 10
Instantiating PDInteractionGraph
examining mutant # 264
designing with this many rotamers 13
Instantiating PDInteractionGraph
examining mutant # 265
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 266
designing with this many rotamers 21
Instantiating PDInteractionGraph
examining mutant # 267
designing with this many rotamers 32
Instantiating PDInteractionGraph
examining mutant # 268
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 269
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 270
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 271
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 272
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 273
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 274
designing with this many rotamers 5
Instantiating PDInteractionGraph
examining mutant # 275
designing with this many rotamers 14
Instantiating PDInteractionGraph
examining mutant # 276
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 277
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 278
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 279
designing with this many rotamers 23
Instantiating PDInteractionGraph
examining mutant # 280
designing with this many rotamers 10
Instantiating PDInteractionGraph
examining mutant # 281
designing with this many rotamers 11
Instantiating PDInteractionGraph
examining mutant # 282
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 283
designing with this many rotamers 16
Instantiating PDInteractionGraph
examining mutant # 284
designing with this many rotamers 17
Instantiating PDInteractionGraph
examining mutant # 285
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 286
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 287
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 288
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 289
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 290
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 291
designing with this many rotamers 8
Instantiating PDInteractionGraph
examining mutant # 292
designing with this many rotamers 17
Instantiating PDInteractionGraph
examining mutant # 293
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 294
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 295
designing with this many rotamers 5
Instantiating PDInteractionGraph
examining mutant # 296
designing with this many rotamers 18
Instantiating PDInteractionGraph
examining mutant # 297
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 298
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 299
designing with this many rotamers 13
Instantiating PDInteractionGraph
examining mutant # 300
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 301
designing with this many rotamers 14
Instantiating PDInteractionGraph
examining mutant # 302
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 303
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 304
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 305
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 306
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 307
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 308
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 309
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 310
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 311
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 312
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 313
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 314
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 315
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 316
designing with this many rotamers 5
Instantiating PDInteractionGraph
examining mutant # 317
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 318
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 319
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 320
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 321
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 322
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 323
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 324
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 325
designing with this many rotamers 11
Instantiating PDInteractionGraph
examining mutant # 326
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 327
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 328
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 329
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 330
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 331
designing with this many rotamers 11
Instantiating PDInteractionGraph
examining mutant # 332
designing with this many rotamers 12
Instantiating PDInteractionGraph
examining mutant # 333
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 334
designing with this many rotamers 12
Instantiating PDInteractionGraph
examining mutant # 335
designing with this many rotamers 10
Instantiating PDInteractionGraph
examining mutant # 336
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 337
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 338
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 339
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 340
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 341
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 342
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 343
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 344
designing with this many rotamers 5
Instantiating PDInteractionGraph
examining mutant # 345
designing with this many rotamers 5
Instantiating PDInteractionGraph
examining mutant # 346
designing with this many rotamers 27
Instantiating PDInteractionGraph
examining mutant # 347
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 348
designing with this many rotamers 14
Instantiating PDInteractionGraph
examining mutant # 349
designing with this many rotamers 11
Instantiating PDInteractionGraph
examining mutant # 350
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 351
designing with this many rotamers 15
Instantiating PDInteractionGraph
examining mutant # 352
designing with this many rotamers 27
Instantiating PDInteractionGraph
examining mutant # 353
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 354
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 355
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 356
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 357
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 358
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 359
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 360
designing with this many rotamers 14
Instantiating PDInteractionGraph
examining mutant # 361
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 362
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 363
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 364
designing with this many rotamers 16
Instantiating PDInteractionGraph
examining mutant # 365
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 366
designing with this many rotamers 10
Instantiating PDInteractionGraph
examining mutant # 367
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 368
designing with this many rotamers 13
Instantiating PDInteractionGraph
examining mutant # 369
designing with this many rotamers 18
Instantiating PDInteractionGraph
examining mutant # 370
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 371
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 372
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 373
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 374
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 375
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 376
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 377
designing with this many rotamers 18
Instantiating PDInteractionGraph
examining mutant # 378
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 379
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 380
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 381
designing with this many rotamers 5
Instantiating PDInteractionGraph
examining mutant # 382
designing with this many rotamers 13
Instantiating PDInteractionGraph
examining mutant # 383
designing with this many rotamers 13
Instantiating PDInteractionGraph
examining mutant # 384
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 385
designing with this many rotamers 20
Instantiating PDInteractionGraph
examining mutant # 386
designing with this many rotamers 18
Instantiating PDInteractionGraph
examining mutant # 387
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 388
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 389
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 390
designing with this many rotamers 3
Instantiating PDInteractionGraph
examining mutant # 391
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 392
designing with this many rotamers 1
Instantiating PDInteractionGraph
examining mutant # 393
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 394
designing with this many rotamers 4
Instantiating PDInteractionGraph
examining mutant # 395
designing with this many rotamers 6
Instantiating PDInteractionGraph
examining mutant # 396
designing with this many rotamers 5
Instantiating PDInteractionGraph
examining mutant # 397
designing with this many rotamers 25
Instantiating PDInteractionGraph
examining mutant # 398
designing with this many rotamers 5
Instantiating PDInteractionGraph
examining mutant # 399
designing with this many rotamers 11
Instantiating PDInteractionGraph
examining mutant # 400
designing with this many rotamers 11
Instantiating PDInteractionGraph
examining mutant # 401
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 402
designing with this many rotamers 19
Instantiating PDInteractionGraph
examining mutant # 403
designing with this many rotamers 15
Instantiating PDInteractionGraph
examining mutant # 404
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 405
designing with this many rotamers 9
Instantiating PDInteractionGraph
examining mutant # 406
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 407
designing with this many rotamers 2
Instantiating PDInteractionGraph
examining mutant # 408
designing with this many rotamers 8
Instantiating PDInteractionGraph
examining mutant # 409
designing with this many rotamers 1
Instantiating PDInteractionGraph
p0_6135: p4_error: interrupt SIGx: 15
p0_6135: (992.487903) net_send: could not write to fd=4, errno = 32 ############ I typed Ctrl + C here ###

####################### The client 1 node ####################
####################### This log file was gererated by calling the command (B) ############################
client number is: 1
command executed: /home/knight/softwares/Rosetta-2.3.0/rosetta++/bin/rosetta.release -mpi_task_distribution -interface -decoystats -ds_outpdb_only -mutlist sample_mutlist_all -s sample.pdb
[T/F OPT]Default FALSE value for [-no_option_display]
[T/F OPT]Default FALSE value for [-args_file]
[STR OPT]Default value for [-paths] paths.txt.
[T/F OPT]Default FALSE value for [-version]
[T/F OPT]Default FALSE value for [-score]
[T/F OPT]Default FALSE value for [-abinitio]
[T/F OPT]Default FALSE value for [-refine]
[T/F OPT]Default FALSE value for [-assemble]
[T/F OPT]Default FALSE value for [-idealize]
[T/F OPT]Default FALSE value for [-relax]
[T/F OPT]Default FALSE value for [-abrelax]
[T/F OPT]Default FALSE value for [-abrelax_mode]
[T/F OPT]Default FALSE value for [-design]
[T/F OPT]Default FALSE value for [-dock]
[T/F OPT]Default FALSE value for [-membrane]
[T/F OPT]Default FALSE value for [-loops]
[T/F OPT]Default FALSE value for [-pdbstats]
[T/F OPT]New TRUE value for [-interface]
[T/F OPT]Default FALSE value for [-fake_native]
[T/F OPT]Default FALSE value for [-docking_hb_stats]
[T/F OPT]Default FALSE value for [-output_position_hetatm]
[T/F OPT]Default FALSE value for [-ddg_bind_only]
[STR OPT]New value for [-mutlist] sample_mutlist_all.
[STR OPT]Default value for [-intout] INT.OUT.
[T/F OPT]Default FALSE value for [-Wpack_only]
[T/F OPT]Default FALSE value for [-Wint_only]
[T/F OPT]Default FALSE value for [-pmut_scan]
[T/F OPT]Default FALSE value for [-affin_incr]
[T/F OPT]Default FALSE value for [-ala_scan_only]
[T/F OPT]Default FALSE value for [-monomeric_protein]
[T/F OPT]Default FALSE value for [-safe]
[T/F OPT]Default FALSE value for [-output_structure]
[T/F OPT]Default FALSE value for [-repack_neighbors]
[T/F OPT]Default FALSE value for [-min_interface]
[T/F OPT]Default FALSE value for [-relax_unbound]
[T/F OPT]Default FALSE value for [-alter_spec_format]
[T/F OPT]Default FALSE value for [-chain_energies]
Rosetta mode: interface
[T/F OPT]Default FALSE value for [-chain]
[T/F OPT]Default FALSE value for [-protein]
[T/F OPT]Default FALSE value for [-series]
[INT OPT]Default value for [-nstruct] 1
[T/F OPT]Default FALSE value for [-concatenate_pdbs]
[T/F OPT]Default FALSE value for [-single_silent_writer]
[T/F OPT]Default FALSE value for [-read_all_chains]
[T/F OPT]Default FALSE value for [-preserve_header]
[T/F OPT]Default FALSE value for [-use_pdb_numbering]
[T/F OPT]Default FALSE value for [-flip_symmetric_sidechains]
[T/F OPT]Default FALSE value for [-repack]
[T/F OPT]Default FALSE value for [-no_optH]
[T/F OPT]Default FALSE value for [-overwrite]
[T/F OPT]Default FALSE value for [-output_pdb_gz]
[T/F OPT]Default FALSE value for [-output_silent_gz]
[T/F OPT]Default FALSE value for [-output_scorefile_gz]
[T/F OPT]Default FALSE value for [-pose_silent_out]
[T/F OPT]Default FALSE value for [-sasapack_bvalues]
[T/F OPT]Default FALSE value for [-cenlist_values]
[T/F OPT]Default FALSE value for [-termini]
[T/F OPT]Default FALSE value for [-Nterminus]
[T/F OPT]Default FALSE value for [-Cterminus]
[T/F OPT]Default FALSE value for [-use_trie]
[T/F OPT]Default FALSE value for [-no_trie]
[T/F OPT]Default FALSE value for [-use_conformer]
[T/F OPT]Default FALSE value for [-use_bbind_conformer]
[T/F OPT]Default FALSE value for [-trials_trie]
[T/F OPT]Default FALSE value for [-no_trials_trie]
[T/F OPT]Default FALSE value for [-pose_relax]
[T/F OPT]Default FALSE value for [-output_interaction_graph_memory_usage]
[T/F OPT]Default FALSE value for [-read_interaction_graph]
[T/F OPT]Default FALSE value for [-write_interaction_graph]
[STR OPT]Default value for [-ig_file] .
[T/F OPT]Default FALSE value for [-packer_precompute_only]
[T/F OPT]Default FALSE value for [-tight_memory_restrictions]
[T/F OPT]Default FALSE value for [-lazy_ig]
[T/F OPT]Default FALSE value for [-linmem_ig]
[T/F OPT]Default FALSE value for [-minimalist_ig]
[T/F OPT]Default FALSE value for [-use_sasa_pack_score]
[T/F OPT]Default FALSE value for [-output_dot_kinemage]
[T/F OPT]Default FALSE value for [-pack_low_temp_annealing]
[T/F OPT]Default FALSE value for [-multi_cool_annealer]
[T/F OPT]Default FALSE value for [-debug_annealer_design]
[T/F OPT]Default FALSE value for [-no_his_his_pairE]
[T/F OPT]Default FALSE value for [-silent_input]
[T/F OPT]Default FALSE value for [-skip_scorefile_check]
[T/F OPT]Default FALSE value for [-timer]
[T/F OPT]Default FALSE value for [-count_attempts]
[T/F OPT]Default FALSE value for [-status]
[T/F OPT]Default FALSE value for [-decoy_status]
[T/F OPT]Default FALSE value for [-ise_movie]
[T/F OPT]Default FALSE value for [-output_all]
[T/F OPT]Default FALSE value for [-output_chi_silent]
[T/F OPT]Default FALSE value for [-accept_all]
[T/F OPT]Default FALSE value for [-skip_missing_residues]
[T/F OPT]Default FALSE value for [-use_input_sc]
[T/F OPT]Default FALSE value for [-use_input_cb]
[STR OPT]Default value for [-weightfile] none.
[STR OPT]Default value for [-cst] cst.
[STR OPT]Default value for [-dpl] dpl.
[STR OPT]Default value for [-resfile] none.
[STR OPT]Default value for [-equiv_resfile] none.
[T/F OPT]Default FALSE value for [-auto_resfile]
[T/F OPT]Default FALSE value for [-chain_inc]
WARNING::
constraints will not be used: query not defined
by series_code,protein_name,and chain_id
WARNING:: nstruct > 0 but output_coord F
no pdb files will be output
[T/F OPT]Default FALSE value for [-full_filename]
[T/F OPT]Default FALSE value for [-map_sequence]
[INT OPT]Default value for [-max_frags] 200
[T/F OPT]Default FALSE value for [-output_centroids]
[STR OPT]Default value for [-protein_name_prefix] .
[STR OPT]Default value for [-frags_name_prefix] .
[T/F OPT]Default FALSE value for [-protein_name_prefix_homolog]
[T/F OPT]Default FALSE value for [-use_homolog_env_stats]
[T/F OPT]Default FALSE value for [-use_homolog_pair_stats]
[T/F OPT]Default FALSE value for [-use_homolog_cendist_stats]
[T/F OPT]Default FALSE value for [-use_homolog_env_stats_in_farlx]
[T/F OPT]Default FALSE value for [-use_homolog_pair_stats_in_farlx]
[T/F OPT]Default FALSE value for [-use_homolog_cendist_stats_in_farlx]
[T/F OPT]Default FALSE value for [-output_hbond_info]
[T/F OPT]Default FALSE value for [-output_interface_hbonds_only]
[T/F OPT]Default FALSE value for [-monomer_input]
[REAL OPT]Default value for [-vdw_reweight] 1
[REAL OPT]Default value for [-env_reweight] 1
[REAL OPT]Default value for [-pair_reweight] 1
[REAL OPT]Default value for [-cb_reweight] 1
[REAL OPT]Default value for [-sheet_reweight] 1
[REAL OPT]Default value for [-ss_reweight] 1
[REAL OPT]Default value for [-hs_reweight] 1
[REAL OPT]Default value for [-rsigma_reweight] 1
[REAL OPT]Default value for [-rg_reweight] 1
[REAL OPT]Default value for [-pc_reweight] 1
[REAL OPT]Default value for [-fa_atr_reweight] 1
[REAL OPT]Default value for [-fa_rep_reweight] 1
[REAL OPT]Default value for [-fa_dun_reweight ] 1
[REAL OPT]Default value for [-fa_pair_reweight] 1
[REAL OPT]Default value for [-fa_plane_reweight] 1
[REAL OPT]Default value for [-fa_solv_reweight] 1
[REAL OPT]Default value for [-fa_ref_reweight ] 1
[REAL OPT]Default value for [-fa_pH_reweight] 1
[REAL OPT]Default value for [-fa_h2o_reweight] 1
[REAL OPT]Default value for [-fa_prob1b_reweight] 1
[REAL OPT]Default value for [-fa_gb_elec_reweigh] 1
[REAL OPT]Default value for [-hb_srbb_reweight] 1
[REAL OPT]Default value for [-hb_lrbb_reweight] 1
[REAL OPT]Default value for [-hb_sc_reweight] 1
[REAL OPT]Default value for [-chainbreak_reweight] 1
[REAL OPT]Default value for [-electron_density_reweight] 1
[REAL OPT]Default value for [-dummy_model_reweight] 1
[REAL OPT]Default value for [-saxs_model_reweight] 1
[REAL OPT]Default value for [-Wplane_total] 0
[REAL OPT]Default value for [-barcode_reweight] 1
[REAL OPT]Default value for [-barcode_energy_reweight] 1
[T/F OPT]Default FALSE value for [-fa_max_dis]
[T/F OPT]Default FALSE value for [-hydrogen_interaction_cutoff]
[T/F OPT]Default FALSE value for [-no_hb_env_dep]
[T/F OPT]Default FALSE value for [-find_disulf]
[T/F OPT]Default FALSE value for [-fix_disulf]
[T/F OPT]Default FALSE value for [-prna]
[T/F OPT]Default FALSE value for [-enable_dna]
[T/F OPT]Default FALSE value for [-enable_rna]
[T/F OPT]Default FALSE value for [-dna_interface]
[T/F OPT]Default FALSE value for [-enable_ligand_aa]
[T/F OPT]Default FALSE value for [-phospho_ser]
[T/F OPT]Default FALSE value for [-surface]
[T/F OPT]Default FALSE value for [-loops]
[T/F OPT]Default FALSE value for [-taboo]
[T/F OPT]Default FALSE value for [-vary_omega]
[T/F OPT]Default FALSE value for [-fine_hb_categories]
[T/F OPT]Default FALSE value for [-geometric_sol]
[T/F OPT]Default FALSE value for [-ex1]
[T/F OPT]Default FALSE value for [-ex2]
[T/F OPT]Default FALSE value for [-ex3]
[T/F OPT]Default FALSE value for [-ex4]
[T/F OPT]Default FALSE value for [-ex1aro]
[T/F OPT]Default FALSE value for [-ex1aro_half]
[T/F OPT]Default FALSE value for [-ex2aro_only]
[T/F OPT]Default FALSE value for [-ex1aro_exposed]
[T/F OPT]Default FALSE value for [-ex2aro_exposed]
[T/F OPT]Default FALSE value for [-exOH]
[INT OPT]Default value for [-extrachi_cutoff] 18
[T/F OPT]Default FALSE value for [-rot_pert]
[T/F OPT]Default FALSE value for [-rot_pert_input]
[T/F OPT]Default FALSE value for [-exdb]
[T/F OPT]Default FALSE value for [-rotamer_explosion]
[T/F OPT]Default FALSE value for [-min_best_rots]
[T/F OPT]Default FALSE value for [-rot_opt]
[T/F OPT]Default FALSE value for [-use_electrostatic_repulsion]
[T/F OPT]Default FALSE value for [-explicit_h2o]
[T/F OPT]Default FALSE value for [-solvate]
[T/F OPT]Default FALSE value for [-pH]
[T/F OPT]Default FALSE value for [-try_both_his_tautomers]
[T/F OPT]Default FALSE value for [-hydrate_dna]
[T/F OPT]Default FALSE value for [-ex_dna_waters]
[T/F OPT]Default FALSE value for [-minimize_rot]
[T/F OPT]Default FALSE value for [-read_hetero_h2o]
[T/F OPT]Default FALSE value for [-Wint_score_only]
[T/F OPT]Default FALSE value for [-Wint_repack_only]
[T/F OPT]Default FALSE value for [-ligand]
[T/F OPT]Default FALSE value for [-enzyme_design]
[T/F OPT]Default FALSE value for [-score_contact_flag]
[T/F OPT]Default FALSE value for [-score_contact_weight]
[T/F OPT]Default FALSE value for [-score_contact_threshold]
[T/F OPT]Default FALSE value for [-scorefxn]
default centroid scorefxn: 4
default fullatom scorefxn: 12
[INT OPT]Default value for [-run_level] 0
[T/F OPT]Default FALSE value for [-silent]
[T/F OPT]Default FALSE value for [-output_silent_gz]
[T/F OPT]Default FALSE value for [-verbose]
[T/F OPT]Default FALSE value for [-gush]
[T/F OPT]Default FALSE value for [-yap]
[T/F OPT]Default FALSE value for [-chat]
[T/F OPT]Default FALSE value for [-inform]
[T/F OPT]Default FALSE value for [-quiet]
run level: 0
[T/F OPT]Default FALSE value for [-benchmark]
[T/F OPT]Default FALSE value for [-debug]
[INT OPT]Default value for [-sym_des_units] 1
[T/F OPT]Default FALSE value for [-mj_min]
[REAL OPT]Default value for [-mod_hhrep_height] 1
[REAL OPT]Default value for [-mod_hhrep_width] 1
[REAL OPT]Default value for [-mod_hhrep_center] 2.79999995
[REAL OPT]Default value for [-mod_hhrep_exponent] 4
[REAL OPT]Default value for [-smooth_etable_ljweight] 1.15999997
[REAL OPT]Default value for [-smooth_etable_solvweight] 1.5
[STR OPT]New value for [-s] sample.pdb.
Starting structure: sample
Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/Rama_smooth_dyn.dat_ss_6.4
Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/phi.theta.36.HS.resmooth
Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/phi.theta.36.SS.resmooth
[STR OPT]Default value for [-atom_vdw_set] default.
[T/F OPT]Default FALSE value for [-IUPAC]
Atom_mode set to all
[STR OPT]Default value for [-paircutoffs] paircutoffs.
Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/paircutoffs
[T/F OPT]Default FALSE value for [-interface_ds]
[T/F OPT]New TRUE value for [-decoystats]
set_decoystats_flag: from,to F T
[T/F OPT]New TRUE value for [-ds_outpdb_only]
[T/F OPT]Default FALSE value for [-tight_core_analysis]
[T/F OPT]Default FALSE value for [-decoyfeatures]
[T/F OPT]Default FALSE value for [-t32s3]
[T/F OPT]Default FALSE value for [-evolution]
[T/F OPT]Default FALSE value for [-evol_recomb]
[T/F OPT]Default FALSE value for [-profile]
[T/F OPT]Default FALSE value for [-dummy_model]
[T/F OPT]Default FALSE value for [-saxs_model]
Profile defined from q = 0 to 1.
[T/F OPT]Default FALSE value for [-new_centroid_packing]
[REAL OPT]Default value for [-centroid_pack_weight] 2
[T/F OPT]Default FALSE value for [-separate_centroid_pack_score]
[REAL OPT]Default value for [-cb_weight] 1
[REAL OPT]Default value for [-localstrandpair_penalty] 0
[REAL OPT]Default value for [-rsd_wt_helix] 1
[REAL OPT]Default value for [-rsd_wt_loop] 1
[REAL OPT]Default value for [-rsd_wt_strand] 1
[REAL OPT]Default value for [-strand_dist_cutoff] 6.5
[T/F OPT]Default FALSE value for [-stretch_strand_dist_cutoff]
[REAL OPT]Default value for [-seq_sep_scale] 20
[REAL OPT]Default value for [-max_strand_dist_cutoff] 12
[T/F OPT]Default FALSE value for [-ignore_sspair_barcode_in_score]
[T/F OPT]Default FALSE value for [-handedness_score]
[T/F OPT]Default FALSE value for [-barcode_mode]
disabling all filters
[REAL OPT]Default value for [-co] -1
[REAL OPT]Default value for [-rms] -1
[T/F OPT]Default FALSE value for [-repeatin]
[T/F OPT]Default FALSE value for [-repeatout]
[T/F OPT]Default FALSE value for [-clnt]
requesting task from server

####################### The client 2 node ####################
####################### This log file was gererated by calling the command (B) ############################
client number is: 2
command executed: /home/knight/softwares/Rosetta-2.3.0/rosetta++/bin/rosetta.release -mpi_task_distribution -interface -decoystats -ds_outpdb_only -mutlist sample_mutlist_all -s sample.pdb
[T/F OPT]Default FALSE value for [-no_option_display]
[T/F OPT]Default FALSE value for [-args_file]
[STR OPT]Default value for [-paths] paths.txt.
[T/F OPT]Default FALSE value for [-version]
[T/F OPT]Default FALSE value for [-score]
[T/F OPT]Default FALSE value for [-abinitio]
[T/F OPT]Default FALSE value for [-refine]
[T/F OPT]Default FALSE value for [-assemble]
[T/F OPT]Default FALSE value for [-idealize]
[T/F OPT]Default FALSE value for [-relax]
[T/F OPT]Default FALSE value for [-abrelax]
[T/F OPT]Default FALSE value for [-abrelax_mode]
[T/F OPT]Default FALSE value for [-design]
[T/F OPT]Default FALSE value for [-dock]
[T/F OPT]Default FALSE value for [-membrane]
[T/F OPT]Default FALSE value for [-loops]
[T/F OPT]Default FALSE value for [-pdbstats]
[T/F OPT]New TRUE value for [-interface]
[T/F OPT]Default FALSE value for [-fake_native]
[T/F OPT]Default FALSE value for [-docking_hb_stats]
[T/F OPT]Default FALSE value for [-output_position_hetatm]
[T/F OPT]Default FALSE value for [-ddg_bind_only]
[STR OPT]New value for [-mutlist] sample_mutlist_all.
[STR OPT]Default value for [-intout] INT.OUT.
[T/F OPT]Default FALSE value for [-Wpack_only]
[T/F OPT]Default FALSE value for [-Wint_only]
[T/F OPT]Default FALSE value for [-pmut_scan]
[T/F OPT]Default FALSE value for [-affin_incr]
[T/F OPT]Default FALSE value for [-ala_scan_only]
[T/F OPT]Default FALSE value for [-monomeric_protein]
[T/F OPT]Default FALSE value for [-safe]
[T/F OPT]Default FALSE value for [-output_structure]
[T/F OPT]Default FALSE value for [-repack_neighbors]
[T/F OPT]Default FALSE value for [-min_interface]
[T/F OPT]Default FALSE value for [-relax_unbound]
[T/F OPT]Default FALSE value for [-alter_spec_format]
[T/F OPT]Default FALSE value for [-chain_energies]
Rosetta mode: interface
[T/F OPT]Default FALSE value for [-chain]
[T/F OPT]Default FALSE value for [-protein]
[T/F OPT]Default FALSE value for [-series]
[INT OPT]Default value for [-nstruct] 1
[T/F OPT]Default FALSE value for [-concatenate_pdbs]
[T/F OPT]Default FALSE value for [-single_silent_writer]
[T/F OPT]Default FALSE value for [-read_all_chains]
[T/F OPT]Default FALSE value for [-preserve_header]
[T/F OPT]Default FALSE value for [-use_pdb_numbering]
[T/F OPT]Default FALSE value for [-flip_symmetric_sidechains]
[T/F OPT]Default FALSE value for [-repack]
[T/F OPT]Default FALSE value for [-no_optH]
[T/F OPT]Default FALSE value for [-overwrite]
[T/F OPT]Default FALSE value for [-output_pdb_gz]
[T/F OPT]Default FALSE value for [-output_silent_gz]
[T/F OPT]Default FALSE value for [-output_scorefile_gz]
[T/F OPT]Default FALSE value for [-pose_silent_out]
[T/F OPT]Default FALSE value for [-sasapack_bvalues]
[T/F OPT]Default FALSE value for [-cenlist_values]
[T/F OPT]Default FALSE value for [-termini]
[T/F OPT]Default FALSE value for [-Nterminus]
[T/F OPT]Default FALSE value for [-Cterminus]
[T/F OPT]Default FALSE value for [-use_trie]
[T/F OPT]Default FALSE value for [-no_trie]
[T/F OPT]Default FALSE value for [-use_conformer]
[T/F OPT]Default FALSE value for [-use_bbind_conformer]
[T/F OPT]Default FALSE value for [-trials_trie]
[T/F OPT]Default FALSE value for [-no_trials_trie]
[T/F OPT]Default FALSE value for [-pose_relax]
[T/F OPT]Default FALSE value for [-output_interaction_graph_memory_usage]
[T/F OPT]Default FALSE value for [-read_interaction_graph]
[T/F OPT]Default FALSE value for [-write_interaction_graph]
[STR OPT]Default value for [-ig_file] .
[T/F OPT]Default FALSE value for [-packer_precompute_only]
[T/F OPT]Default FALSE value for [-tight_memory_restrictions]
[T/F OPT]Default FALSE value for [-lazy_ig]
[T/F OPT]Default FALSE value for [-linmem_ig]
[T/F OPT]Default FALSE value for [-minimalist_ig]
[T/F OPT]Default FALSE value for [-use_sasa_pack_score]
[T/F OPT]Default FALSE value for [-output_dot_kinemage]
[T/F OPT]Default FALSE value for [-pack_low_temp_annealing]
[T/F OPT]Default FALSE value for [-multi_cool_annealer]
[T/F OPT]Default FALSE value for [-debug_annealer_design]
[T/F OPT]Default FALSE value for [-no_his_his_pairE]
[T/F OPT]Default FALSE value for [-silent_input]
[T/F OPT]Default FALSE value for [-skip_scorefile_check]
[T/F OPT]Default FALSE value for [-timer]
[T/F OPT]Default FALSE value for [-count_attempts]
[T/F OPT]Default FALSE value for [-status]
[T/F OPT]Default FALSE value for [-decoy_status]
[T/F OPT]Default FALSE value for [-ise_movie]
[T/F OPT]Default FALSE value for [-output_all]
[T/F OPT]Default FALSE value for [-output_chi_silent]
[T/F OPT]Default FALSE value for [-accept_all]
[T/F OPT]Default FALSE value for [-skip_missing_residues]
[T/F OPT]Default FALSE value for [-use_input_sc]
[T/F OPT]Default FALSE value for [-use_input_cb]
[STR OPT]Default value for [-weightfile] none.
[STR OPT]Default value for [-cst] cst.
[STR OPT]Default value for [-dpl] dpl.
[STR OPT]Default value for [-resfile] none.
[STR OPT]Default value for [-equiv_resfile] none.
[T/F OPT]Default FALSE value for [-auto_resfile]
[T/F OPT]Default FALSE value for [-chain_inc]
WARNING::
constraints will not be used: query not defined
by series_code,protein_name,and chain_id
WARNING:: nstruct > 0 but output_coord F
no pdb files will be output
[T/F OPT]Default FALSE value for [-full_filename]
[T/F OPT]Default FALSE value for [-map_sequence]
[INT OPT]Default value for [-max_frags] 200
[T/F OPT]Default FALSE value for [-output_centroids]
[STR OPT]Default value for [-protein_name_prefix] .
[STR OPT]Default value for [-frags_name_prefix] .
[T/F OPT]Default FALSE value for [-protein_name_prefix_homolog]
[T/F OPT]Default FALSE value for [-use_homolog_env_stats]
[T/F OPT]Default FALSE value for [-use_homolog_pair_stats]
[T/F OPT]Default FALSE value for [-use_homolog_cendist_stats]
[T/F OPT]Default FALSE value for [-use_homolog_env_stats_in_farlx]
[T/F OPT]Default FALSE value for [-use_homolog_pair_stats_in_farlx]
[T/F OPT]Default FALSE value for [-use_homolog_cendist_stats_in_farlx]
[T/F OPT]Default FALSE value for [-output_hbond_info]
[T/F OPT]Default FALSE value for [-output_interface_hbonds_only]
[T/F OPT]Default FALSE value for [-monomer_input]
[REAL OPT]Default value for [-vdw_reweight] 1
[REAL OPT]Default value for [-env_reweight] 1
[REAL OPT]Default value for [-pair_reweight] 1
[REAL OPT]Default value for [-cb_reweight] 1
[REAL OPT]Default value for [-sheet_reweight] 1
[REAL OPT]Default value for [-ss_reweight] 1
[REAL OPT]Default value for [-hs_reweight] 1
[REAL OPT]Default value for [-rsigma_reweight] 1
[REAL OPT]Default value for [-rg_reweight] 1
[REAL OPT]Default value for [-pc_reweight] 1
[REAL OPT]Default value for [-fa_atr_reweight] 1
[REAL OPT]Default value for [-fa_rep_reweight] 1
[REAL OPT]Default value for [-fa_dun_reweight ] 1
[REAL OPT]Default value for [-fa_pair_reweight] 1
[REAL OPT]Default value for [-fa_plane_reweight] 1
[REAL OPT]Default value for [-fa_solv_reweight] 1
[REAL OPT]Default value for [-fa_ref_reweight ] 1
[REAL OPT]Default value for [-fa_pH_reweight] 1
[REAL OPT]Default value for [-fa_h2o_reweight] 1
[REAL OPT]Default value for [-fa_prob1b_reweight] 1
[REAL OPT]Default value for [-fa_gb_elec_reweigh] 1
[REAL OPT]Default value for [-hb_srbb_reweight] 1
[REAL OPT]Default value for [-hb_lrbb_reweight] 1
[REAL OPT]Default value for [-hb_sc_reweight] 1
[REAL OPT]Default value for [-chainbreak_reweight] 1
[REAL OPT]Default value for [-electron_density_reweight] 1
[REAL OPT]Default value for [-dummy_model_reweight] 1
[REAL OPT]Default value for [-saxs_model_reweight] 1
[REAL OPT]Default value for [-Wplane_total] 0
[REAL OPT]Default value for [-barcode_reweight] 1
[REAL OPT]Default value for [-barcode_energy_reweight] 1
[T/F OPT]Default FALSE value for [-fa_max_dis]
[T/F OPT]Default FALSE value for [-hydrogen_interaction_cutoff]
[T/F OPT]Default FALSE value for [-no_hb_env_dep]
[T/F OPT]Default FALSE value for [-find_disulf]
[T/F OPT]Default FALSE value for [-fix_disulf]
[T/F OPT]Default FALSE value for [-prna]
[T/F OPT]Default FALSE value for [-enable_dna]
[T/F OPT]Default FALSE value for [-enable_rna]
[T/F OPT]Default FALSE value for [-dna_interface]
[T/F OPT]Default FALSE value for [-enable_ligand_aa]
[T/F OPT]Default FALSE value for [-phospho_ser]
[T/F OPT]Default FALSE value for [-surface]
[T/F OPT]Default FALSE value for [-loops]
[T/F OPT]Default FALSE value for [-taboo]
[T/F OPT]Default FALSE value for [-vary_omega]
[T/F OPT]Default FALSE value for [-fine_hb_categories]
[T/F OPT]Default FALSE value for [-geometric_sol]
[T/F OPT]Default FALSE value for [-ex1]
[T/F OPT]Default FALSE value for [-ex2]
[T/F OPT]Default FALSE value for [-ex3]
[T/F OPT]Default FALSE value for [-ex4]
[T/F OPT]Default FALSE value for [-ex1aro]
[T/F OPT]Default FALSE value for [-ex1aro_half]
[T/F OPT]Default FALSE value for [-ex2aro_only]
[T/F OPT]Default FALSE value for [-ex1aro_exposed]
[T/F OPT]Default FALSE value for [-ex2aro_exposed]
[T/F OPT]Default FALSE value for [-exOH]
[INT OPT]Default value for [-extrachi_cutoff] 18
[T/F OPT]Default FALSE value for [-rot_pert]
[T/F OPT]Default FALSE value for [-rot_pert_input]
[T/F OPT]Default FALSE value for [-exdb]
[T/F OPT]Default FALSE value for [-rotamer_explosion]
[T/F OPT]Default FALSE value for [-min_best_rots]
[T/F OPT]Default FALSE value for [-rot_opt]
[T/F OPT]Default FALSE value for [-use_electrostatic_repulsion]
[T/F OPT]Default FALSE value for [-explicit_h2o]
[T/F OPT]Default FALSE value for [-solvate]
[T/F OPT]Default FALSE value for [-pH]
[T/F OPT]Default FALSE value for [-try_both_his_tautomers]
[T/F OPT]Default FALSE value for [-hydrate_dna]
[T/F OPT]Default FALSE value for [-ex_dna_waters]
[T/F OPT]Default FALSE value for [-minimize_rot]
[T/F OPT]Default FALSE value for [-read_hetero_h2o]
[T/F OPT]Default FALSE value for [-Wint_score_only]
[T/F OPT]Default FALSE value for [-Wint_repack_only]
[T/F OPT]Default FALSE value for [-ligand]
[T/F OPT]Default FALSE value for [-enzyme_design]
[T/F OPT]Default FALSE value for [-score_contact_flag]
[T/F OPT]Default FALSE value for [-score_contact_weight]
[T/F OPT]Default FALSE value for [-score_contact_threshold]
[T/F OPT]Default FALSE value for [-scorefxn]
default centroid scorefxn: 4
default fullatom scorefxn: 12
[INT OPT]Default value for [-run_level] 0
[T/F OPT]Default FALSE value for [-silent]
[T/F OPT]Default FALSE value for [-output_silent_gz]
[T/F OPT]Default FALSE value for [-verbose]
[T/F OPT]Default FALSE value for [-gush]
[T/F OPT]Default FALSE value for [-yap]
[T/F OPT]Default FALSE value for [-chat]
[T/F OPT]Default FALSE value for [-inform]
[T/F OPT]Default FALSE value for [-quiet]
run level: 0
[T/F OPT]Default FALSE value for [-benchmark]
[T/F OPT]Default FALSE value for [-debug]
[INT OPT]Default value for [-sym_des_units] 1
[T/F OPT]Default FALSE value for [-mj_min]
[REAL OPT]Default value for [-mod_hhrep_height] 1
[REAL OPT]Default value for [-mod_hhrep_width] 1
[REAL OPT]Default value for [-mod_hhrep_center] 2.79999995
[REAL OPT]Default value for [-mod_hhrep_exponent] 4
[REAL OPT]Default value for [-smooth_etable_ljweight] 1.15999997
[REAL OPT]Default value for [-smooth_etable_solvweight] 1.5
[STR OPT]New value for [-s] sample.pdb.
Starting structure: sample
Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/Rama_smooth_dyn.dat_ss_6.4
Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/phi.theta.36.HS.resmooth
Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/phi.theta.36.SS.resmooth
[STR OPT]Default value for [-atom_vdw_set] default.
[T/F OPT]Default FALSE value for [-IUPAC]
Atom_mode set to all
[STR OPT]Default value for [-paircutoffs] paircutoffs.
Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/paircutoffs
[T/F OPT]Default FALSE value for [-interface_ds]
[T/F OPT]New TRUE value for [-decoystats]
set_decoystats_flag: from,to F T
[T/F OPT]New TRUE value for [-ds_outpdb_only]
[T/F OPT]Default FALSE value for [-tight_core_analysis]
[T/F OPT]Default FALSE value for [-decoyfeatures]
[T/F OPT]Default FALSE value for [-t32s3]
[T/F OPT]Default FALSE value for [-evolution]
[T/F OPT]Default FALSE value for [-evol_recomb]
[T/F OPT]Default FALSE value for [-profile]
[T/F OPT]Default FALSE value for [-dummy_model]
[T/F OPT]Default FALSE value for [-saxs_model]
Profile defined from q = 0 to 1.
[T/F OPT]Default FALSE value for [-new_centroid_packing]
[REAL OPT]Default value for [-centroid_pack_weight] 2
[T/F OPT]Default FALSE value for [-separate_centroid_pack_score]
[REAL OPT]Default value for [-cb_weight] 1
[REAL OPT]Default value for [-localstrandpair_penalty] 0
[REAL OPT]Default value for [-rsd_wt_helix] 1
[REAL OPT]Default value for [-rsd_wt_loop] 1
[REAL OPT]Default value for [-rsd_wt_strand] 1
[REAL OPT]Default value for [-strand_dist_cutoff] 6.5
[T/F OPT]Default FALSE value for [-stretch_strand_dist_cutoff]
[REAL OPT]Default value for [-seq_sep_scale] 20
[REAL OPT]Default value for [-max_strand_dist_cutoff] 12
[T/F OPT]Default FALSE value for [-ignore_sspair_barcode_in_score]
[T/F OPT]Default FALSE value for [-handedness_score]
[T/F OPT]Default FALSE value for [-barcode_mode]
disabling all filters
[REAL OPT]Default value for [-co] -1
[REAL OPT]Default value for [-rms] -1
[T/F OPT]Default FALSE value for [-repeatin]
[T/F OPT]Default FALSE value for [-repeatout]
[T/F OPT]Default FALSE value for [-clnt]
requesting task from server