I got a structure from CS-Rosetta and want to refine it with rosetta. In the protocol it says
1. Input pdb files into Rosetta format
2. Add "missing" residues, such as N- and C-term, relax (not needed If NMR structure is for full length sequence)
3. Idealize geometry
Does someone know how to do it in details? How to convert the format and add missing residues?