can someone tell me how I get the superimpose_pose function working. It requires besides the two poses an "(object)atom_map"n specifying a set of atoms to superimpose i guess?
So, how does this object look, or how do I generate it. I would like something equal to the "structural_alignment.py" of EH Baugh (input: pose1, pose2, residues1, residues2) from the Pyrosetta site. Or does the existence of this .py tell me there is no build in function in PyRosetta that works this way?