Quick question, I am interested in refining a few homology models with long runs of the relax protocol. I find the run time is fairly short on my local supercomputer system, and I'd like to make maximum use of the resources available to me. So, how do I improve my models by refining for a week instead of just a few minutes without having the job exiting? (Note: I believe the run exits normally.)
Also, is there a good order to use the applications when it comes to relax / loop modeling / backrub?
sqsub -q mpi -n 128 -r 7d -o out.log /work/username/rosetta/rosetta_source/bin/relax.mpi.linuxgccrelease @flags
ramp_repack_min 0.02 0.01
ramp_repack_min 0.250 0.01
ramp_repack_min 0.550 0.01
ramp_repack_min 1 0.00001