I am using the docking_protocol.linux for high resolution complex. I found there are many parameters in *.fasc file such as:
fa_atr fa_dun fa_rep fa_sol hack_elec hbond_bb_sc hbond_lr_bb hbond_sc hbond_sr_bb interchain_contact interchain_env interchain_pair interchain_vdw.
So, I am wondering which one would be a measurement for final model selection?
BTW, could this protocol support MPI multiple CPU running?