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PyRosetta - Applications

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:20
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12,969 by admin
Fri, 2015-09-04 16:15
Normal topic Scoring function for disordered peptide ddG calculations?
by austin.weigle.usda » Tue, 2024-05-28 14:52
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113 by austin.weigle.usda
Tue, 2024-05-28 14:52
Normal topic Demo scripts for proteinmpnn in pyrosetta
by lwhitm1 » Wed, 2023-11-08 17:57
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384 by lwhitm1
Wed, 2023-11-08 17:57
Normal topic NMR NOE based structure prediction
by Pooja » Sun, 2023-09-24 23:39
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507 by Pooja
Sun, 2023-09-24 23:40
Normal topic Altered pLDDT scores after running FastRelax on AlphaFold Multimer output pdb files
by franz72 » Sun, 2023-09-17 14:08
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560 by franz72
Sun, 2023-09-17 14:08
Normal topic InterfaceAnalyzerMover with more than two chains
by franz72 » Fri, 2023-08-04 08:33
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1,008 by rmoretti
Sun, 2023-08-06 18:32
Normal topic Ab initio peptide design to use as ligands in docking
by archaeopteryx » Tue, 2023-06-27 11:09
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797 by rmoretti
Wed, 2023-06-28 12:27
Normal topic ideal A-form RNA Helix
by tspich » Wed, 2023-05-17 03:01
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468 by tspich
Wed, 2023-05-17 03:01
Normal topic How to use pyrosetta to generate decoys of RNA with different RMSDs (e.g. 1Å, 5Å, 10Å).
by Alice123 » Fri, 2023-02-17 18:24
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570 by Alice123
Fri, 2023-02-17 18:24
Normal topic Rosettasurface in Pyrosetta 4
by Oaham » Mon, 2021-11-22 23:35
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1,440 by matteoferla
Mon, 2021-11-29 09:13
Normal topic Problem importing residue params file
by joeri » Sat, 2021-03-20 04:01
4
3,214 by joeri
Tue, 2021-03-23 10:06
Normal topic Docking high and low resolution
by nasim.soltani58 » Thu, 2020-12-17 10:26
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2,185 by nasim.soltani58
Thu, 2020-12-17 14:12
Normal topic Constraints residues in different chain in protein-protein docking
by nasim.soltani58 » Sat, 2020-11-28 10:24
2
2,357 by nasim.soltani58
Mon, 2020-11-30 12:24
Normal topic Membrane-bound relaxation constrained by an ED map
by matteoferla » Fri, 2020-10-30 07:25
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1,213 by matteoferla
Fri, 2020-10-30 07:25
Normal topic High Resolution Docking with DockMCMProtocol
by hjacomet » Thu, 2020-10-29 09:02
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1,136 by hjacomet
Thu, 2020-10-29 09:10
Normal topic Minimizer Iterations
by hjacomet » Tue, 2020-09-29 01:33
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1,117 by hjacomet
Tue, 2020-09-29 01:33
Normal topic constrain 2 proteins in protein-protein docking
by PatC » Wed, 2020-08-12 08:38
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2,403 by matteoferla
Sat, 2020-08-15 08:17
Normal topic How can I insert my variable length fragmrnts library into pyrosetta?
by michelleqyh » Tue, 2020-08-04 07:22
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942 by michelleqyh
Tue, 2020-08-04 07:22
Normal topic Running FastFloppyTail on IDPs
by Thomas » Tue, 2020-07-28 12:40
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2,322 by Thomas
Tue, 2020-07-28 20:29
Normal topic Distorted metal coordination geometry after relaxation (SetupMetalMover was used, fold tree and constraints were set manually)
by TLP » Tue, 2020-01-21 11:18
2
2,707 by TLP
Fri, 2020-04-03 10:20
Normal topic Relaxation vs minimisation
by mm » Fri, 2020-03-13 04:49
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2,502 by mm
Fri, 2020-03-20 05:06
Normal topic Breaking fastDesign into more stages or writing something custom
by broomsday » Mon, 2020-03-16 06:52
1
1,769 by vmulligan
Tue, 2020-03-17 12:06
Normal topic trans-ACPC
by tttt » Wed, 2019-12-04 03:23
1
2,120 by vmulligan
Wed, 2019-12-04 12:56
Normal topic Random perturbations to peptide backbone
by Martin Floor » Mon, 2018-12-10 17:16
2
3,140 by MNP1986
Mon, 2019-08-12 05:18
Normal topic Protein Protein Docking with bound ligands
by ajaniharesh » Mon, 2019-02-25 06:33
1
2,338 by rmoretti
Thu, 2019-05-09 13:47
Normal topic Problems when working with PTMs - cannot make sugar poses
by MNP1986 » Thu, 2019-01-10 07:44
6
7,102 by MNP1986
Mon, 2019-01-21 05:56
Normal topic Pocket Constraint
by jferrie » Thu, 2018-08-30 18:37
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1,558 by jferrie
Thu, 2018-08-30 18:38
Normal topic Introducing N/C-terminal residues to a pose
by MNP1986 » Thu, 2018-08-23 06:09
2
4,498 by MNP1986
Thu, 2018-08-30 06:07
Normal topic How to make FastRelax use smaller number of rotamers from PyRosetta app?
by sn » Tue, 2018-08-21 15:55
1
2,710 by smlewis
Wed, 2018-08-22 12:35
Normal topic How to use MPI with PyRosetta?
by sn » Fri, 2018-06-01 15:44
1
3,157 by rmoretti
Thu, 2018-06-28 11:52
Normal topic Relevant number of cycles of loop closure required
by vasavi » Mon, 2018-06-11 02:55
1
2,270 by smlewis
Mon, 2018-06-11 19:38
Normal topic residue_pair_energies
by kamau » Fri, 2017-12-01 09:21
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3,268 by kamau
Fri, 2017-12-01 16:50
Normal topic Relaxation with PyRosetta
by peony » Sat, 2014-02-15 04:36
3
7,305 by jadolfbr
Sat, 2017-06-03 20:20
Normal topic Change in Gibbs free energy (delta delta G) of RNA
by wrshoemaker » Thu, 2017-01-26 15:47
1
5,785 by rmoretti
Thu, 2017-02-02 09:44
Normal topic PackRotamersMover not sampling rotamers of small molecule ligand
by latashyoussef » Mon, 2016-05-16 21:02
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4,157 by rmoretti
Mon, 2016-09-05 10:43
Normal topic antibody.py
by franfdez » Mon, 2016-08-01 08:12
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10,248 by franfdez
Thu, 2016-08-04 01:57
Normal topic Modified Amino Acid Side Chain
by jferrie » Fri, 2016-06-17 08:13
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10,193 by jferrie
Mon, 2016-08-01 08:39
Normal topic Segmentation Fault when using DockMCMProtocol
by latashyoussef » Mon, 2016-05-16 20:10
2
3,493 by latashyoussef
Mon, 2016-05-16 22:33
Normal topic Docking with Constraints in PyRosetta
by protos_heis » Sat, 2015-03-28 11:16
4
8,677 by protos_heis
Mon, 2015-03-30 06:30
Normal topic Enabling N-Linked Glycans
by jzabilansky » Thu, 2014-06-05 11:51
3
5,842 by Labonte
Mon, 2014-10-06 14:56
Normal topic Minimising space exploration during docking
by asf40 » Mon, 2014-09-22 10:37
1
2,948 by rmoretti
Tue, 2014-09-23 08:05
Normal topic How to get the Ligand RMSD
by oppopomoz » Wed, 2014-06-25 09:26
1
4,512 by rmoretti
Tue, 2014-07-01 11:42
Normal topic Problem with PyRosetta install
by fcazals » Wed, 2014-05-21 09:11
2
6,933 by fcazals
Tue, 2014-05-27 14:48
Normal topic Scoring a membrane protein in PyRosetta?
by tsikosek » Thu, 2014-01-16 15:05
14
19,741 by nh
Mon, 2014-04-21 06:48
Normal topic Best scoring function ofr Structure Prediction
by Nuria » Thu, 2012-04-05 13:52
1
4,879 by smlewis
Mon, 2014-04-21 06:47
Normal topic frelax relaxation with constrains
by ast » Fri, 2012-02-24 01:44
4
6,932 by smlewis
Mon, 2014-04-21 06:47
Normal topic partial alignment in pyrosetta
by ast » Thu, 2012-02-23 04:16
1
4,641 by smlewis
Mon, 2014-04-21 06:47
Normal topic Refinement using low-resolution electron density
by astrofunk12 » Sun, 2011-09-11 05:06
1
3,719 by smlewis
Mon, 2014-04-21 06:47
Normal topic Minimization Toolkit W/GUI
by jadolfbr » Sat, 2011-03-12 15:58
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11,260 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic How to use new functions introduced in 2.0?
by mn » Wed, 2011-03-02 22:10
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2,466 by mn
Mon, 2014-04-21 06:47
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