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FAQ by admin » Mon, 2010-08-30 01:38 |
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22,482 |
by Sergey Fri, 2015-09-04 16:14 |
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Different results FastRelax pyrosetta vs rosetta_scripts by karenjgonzalez » Tue, 2023-06-20 09:52 |
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398 |
by karenjgonzalez Fri, 2023-08-11 10:57 |
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GPU computing and PyRosetta by oppopomoz » Thu, 2013-07-11 05:55 |
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4,452 |
by rmoretti Mon, 2014-04-21 06:48 |
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"corrupted" small molecules. aromatic rings get distortet during relax by patcD » Thu, 2022-07-21 04:51 |
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3,087 |
by rmoretti Thu, 2022-07-21 07:14 |
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"No Python class registered..." when trying to access SymDofs by pitmand » Tue, 2015-03-17 14:29 |
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4,945 |
by Sergey Fri, 2015-03-27 14:34 |
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"Server Could Not Be Reached" although I have an Internet connection by epi89 » Mon, 2020-09-28 21:32 |
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1,512 |
by smlewis Tue, 2020-09-29 12:00 |
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"Server Could Not Be Reached" although I have an Internet connection by aushawxian » Sun, 2018-01-28 20:21 |
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1,920 |
by walcob Mon, 2018-01-29 11:22 |
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(1) Score pose, (2) move atom, (3) score pose by msellers » Fri, 2011-07-15 11:04 |
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5,930 |
by msellers Mon, 2014-04-21 06:47 |
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403 on documentation for PyRosetta by matteoferla » Mon, 2022-06-06 12:19 |
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2,370 |
by rmoretti Mon, 2022-06-06 12:35 |
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About missing disulfide partners for residue... by Mon » Wed, 2014-12-17 05:37 |
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5,593 |
by jadolfbr Thu, 2014-12-18 09:37 |
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Acessing energies terms from energy.show() table by João Sartori » Mon, 2022-02-07 07:56 |
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1,188 |
by João Sartori Wed, 2022-02-09 04:35 |
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add missing residues into rna by galvaner » Tue, 2015-09-15 16:41 |
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4,360 |
by galvaner Mon, 2015-09-21 13:37 |
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Add new atom by eberhardt » Thu, 2013-03-14 02:01 |
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6,838 |
by eberhardt Mon, 2014-04-21 06:47 |
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Adding a residue type to a residue type set by matteoferla » Wed, 2020-07-08 08:14 |
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2,515 |
by matteoferla Fri, 2020-07-10 02:20 |
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adding coordinate constraints by jtmacd » Tue, 2011-04-12 04:51 |
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11,519 |
by jtmacd Mon, 2014-04-21 06:47 |
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Adding Custom AtomTypes to Pyrosetta by garrettameek » Wed, 2019-03-13 15:06 |
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1,710 |
by rmoretti Thu, 2019-05-09 15:06 |
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Adding energies of residues doesnt add up to energy of the entire protein by astrofunk » Tue, 2010-09-14 11:24 |
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3,050 |
by smlewis Mon, 2014-04-21 06:47 |
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adding nucleotides to a dna model by jadolfbr » Wed, 2012-12-05 11:40 |
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4,501 |
by smlewis Mon, 2014-04-21 06:47 |
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Affinity optimization with GreedyOptMutationMover by wentlewi » Thu, 2020-05-07 08:29 |
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1,056 |
by wentlewi Thu, 2020-05-07 12:33 |
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Alignment and RMSD by ñ » Wed, 2013-11-27 12:43 |
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10,146 |
by rmoretti Mon, 2014-04-21 06:48 |
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Allowing cysteines to repack by eyliaw » Thu, 2012-07-05 14:46 |
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4,007 |
by rmoretti Mon, 2014-04-21 06:47 |
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Altering Score/EMapVector by mmertens » Fri, 2012-01-27 09:33 |
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4,886 |
by rmoretti Mon, 2014-04-21 06:47 |
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Alternative to MinMover by MNP1986 » Tue, 2018-07-31 02:18 |
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2,973 |
by MNP1986 Tue, 2018-07-31 23:50 |
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Alternatives to DockMCMProtocol by swirt » Thu, 2021-01-28 17:37 |
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2,443 |
by swirt Thu, 2021-02-25 21:54 |
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Amino acid modifications: retinal linked to lysine by tsikosek » Tue, 2014-01-21 12:52 |
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3,097 |
by rmoretti Mon, 2014-04-21 06:48 |
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An issue with GenericMonteCarloMover() by ac.research » Wed, 2018-03-07 13:57 |
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8,744 |
by ac.research Fri, 2018-05-11 10:59 |
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analysis utilities for trajectories by cbala » Mon, 2010-06-14 02:58 |
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1,721 |
by cbala Mon, 2014-04-21 06:47 |
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Announcements by sid » Fri, 2009-10-02 08:54 |
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1,619 |
by sid Mon, 2014-04-21 06:47 |
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any examples of calling SnugDock from pyrosetta? by antonkulaga » Thu, 2021-12-23 16:13 |
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1,023 |
by matteoferla Mon, 2022-01-10 07:14 |
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Applying RMSD constraints using pyrosetta or Rosettascripts by chenna » Thu, 2023-02-09 05:37 |
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1,429 |
by chenna Fri, 2023-02-10 05:37 |
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Approximating CHARMM energy by the rosetta scoring function by ajasja » Fri, 2014-06-20 02:16 |
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5,626 |
by ajasja Thu, 2014-07-03 05:53 |
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Architecture question by jwillis » Thu, 2010-02-25 09:43 |
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1,775 |
by jwillis Mon, 2014-04-21 06:47 |
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Are there any plans to make PyRosetta directly functional on 64-bit architecture? by AndrewBworth » Fri, 2009-12-18 10:09 |
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2,739 |
by sid Mon, 2014-04-21 06:47 |
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Argument error when running D120_Ligand_interface.py by piladam » Wed, 2014-07-09 10:43 |
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6,923 |
by rmoretti Mon, 2014-07-21 11:15 |
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Assesing the docking by nasim.soltani58 » Sat, 2020-12-05 21:19 |
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1,665 |
by nasim.soltani58 Tue, 2020-12-08 22:44 |
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Atom mapping in RMSD functions by gkell » Tue, 2022-02-15 15:48 |
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981 |
by rmoretti Fri, 2022-02-18 10:23 |
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Atom-wise energy terms from nearest N-neighbors by jasiozaucha » Thu, 2021-03-25 14:49 |
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1,981 |
by matteoferla Fri, 2021-05-28 02:41 |
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Backbone didn't change in docking, why? by SunH » Wed, 2010-06-02 10:07 |
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6,049 |
by SunH Mon, 2014-04-21 06:47 |
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backrub mover by sunlufinal » Sat, 2012-11-24 04:46 |
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11,017 |
by jadolfbr Tue, 2015-08-18 00:53 |
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BackrubMover options by AOK » Thu, 2012-05-24 05:06 |
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5,175 |
by AOK Mon, 2014-04-21 06:47 |
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Best Way to Append/Insert Residue by jaulicino » Tue, 2020-07-21 10:24 |
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3,362 |
by matteoferla Sat, 2020-07-25 03:52 |
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Best way to store a pose by Pyrosetta for Pyrosetta by matteoferla » Wed, 2021-04-07 06:50 |
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1,857 |
by matteoferla Wed, 2021-04-07 06:50 |
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Beta-Hairpin Design by bharat_46010 » Wed, 2014-02-12 23:18 |
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3,844 |
by bharat_46010 Thu, 2014-02-13 16:00 |
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BluePrintBDRMover set_atom_type error by ac.research » Sat, 2017-12-09 02:16 |
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3,089 |
by rmoretti Sat, 2017-12-16 14:06 |
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Boost.Python C++/PyRosetta interop by gipsonb » Wed, 2010-10-06 15:15 |
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2,633 |
by gipsonb Mon, 2014-04-21 06:47 |
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building a 77 amino acid long fragment by tevang » Fri, 2010-02-19 06:37 |
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1,647 |
by tevang Mon, 2014-04-21 06:47 |
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Calculate residue-residue pairwise energies by pachecoj » Tue, 2013-07-23 04:51 |
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6,461 |
by Sergey Mon, 2014-04-21 06:48 |
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Calculate TM-score by nasim.soltani58 » Fri, 2021-03-26 16:50 |
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2,195 |
by rmoretti Mon, 2021-03-29 06:53 |
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Calculating sasa per atom and atomid_map by ioannis.f » Wed, 2014-08-13 05:26 |
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2,573 |
by Sergey Thu, 2014-08-14 11:54 |
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Calling SnugDock from PyRosetta by shruthi.murali » Wed, 2020-07-29 15:10 |
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2,851 |
by antonkulaga Thu, 2021-12-23 16:07 |
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Can I export command line & result from iPython PyRosetta shell to a text file? by lanselibai » Mon, 2014-08-25 04:05 |
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3,632 |
by lanselibai Tue, 2014-08-26 01:49 |
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Can we have email alert for the reply? by lanselibai » Wed, 2014-08-13 13:24 |
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1,718 |
by lanselibai Wed, 2014-08-13 13:24 |
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Cannot get PyMOL_mover to work on MacOS by cno » Fri, 2012-02-10 07:24 |
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4,289 |
by cno Mon, 2014-04-21 06:47 |
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Cannot get PyMOL_Observer to work on MacOS by cno » Thu, 2012-02-16 09:15 |
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2,338 |
by Sergey Mon, 2014-04-21 06:47 |
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Capturing the output of scorefxn.show(pose) by ajasja » Fri, 2014-06-20 05:30 |
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3,830 |
by ajasja Sat, 2014-06-21 11:57 |
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cartesian delta delta G by patcD » Wed, 2021-02-10 01:46 |
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3,403 |
by j0kaso Wed, 2021-03-03 17:37 |
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cartesian space minimization by bystrc » Fri, 2014-03-28 14:17 |
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14,400 |
by rmoretti Thu, 2016-02-18 14:22 |
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Challenge with applying AntibodyCDRGrafter method and MinMover method by kylevaccaro » Sat, 2023-02-18 21:41 |
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1,195 |
by nannemdp Sun, 2023-02-19 12:05 |
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change dihedral angles of any residue by bharat_46010 » Fri, 2013-11-15 00:30 |
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5,084 |
by bharat_46010 Mon, 2014-04-21 06:48 |
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Changing the membrane Thickness (THKN) by jlapin » Mon, 2018-11-12 06:32 |
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1,843 |
by ralford Wed, 2018-12-19 03:20 |
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Charmm, hydroxyproline, hydrogen atom ID by rfschleif » Tue, 2011-07-12 11:26 |
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3,502 |
by rfschleif Mon, 2014-04-21 06:47 |
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Classic Relax by iGemBoulder » Fri, 2019-06-28 09:24 |
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2,398 |
by sheehajh Wed, 2019-07-17 12:43 |
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ClassicRelax with ligand by S » Mon, 2010-09-27 07:55 |
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2,116 |
by smlewis Mon, 2014-04-21 06:47 |
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ClassicRelax: how to block the backbone by oppopomoz » Fri, 2015-11-27 08:17 |
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4,064 |
by rmoretti Tue, 2015-12-01 15:18 |
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cleanATOM() for non-ideal amino acids by ac.research » Thu, 2018-03-29 07:50 |
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1,314 |
by ac.research Thu, 2018-03-29 07:50 |
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Collect data about the modelling by Roberto » Thu, 2022-01-06 01:43 |
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616 |
by Roberto Thu, 2022-01-06 01:43 |
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Compile C++ Rosetta to Pyrosetta by michelleqyh » Fri, 2020-08-21 08:44 |
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979 |
by michelleqyh Fri, 2020-08-21 08:44 |
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Complex DNA Protein docking by kim-nguyen » Wed, 2015-07-22 13:49 |
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3,907 |
by kim-nguyen Fri, 2015-07-24 23:04 |
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Concatenate Pose by jadolfbr » Sat, 2011-02-19 21:12 |
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8,840 |
by smlewis Mon, 2014-04-21 06:47 |
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Constraint files, section formatted by srballard » Fri, 2010-11-05 11:55 |
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2,802 |
by drluca77 Mon, 2014-04-21 06:47 |
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Convert Rotamer Vector to Chi Angles by L-Allanine » Sat, 2016-07-30 09:16 |
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2,106 |
by rmoretti Mon, 2016-09-05 10:35 |
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Coordinates in pose do not match those in PDB by ajasja » Tue, 2014-10-28 12:29 |
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3,433 |
by ajasja Thu, 2014-10-30 08:32 |
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Create PDB for heterodimer by pachecoj » Mon, 2013-08-05 19:11 |
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5,666 |
by rmoretti Mon, 2014-04-21 06:48 |
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Creating a vector1 of AtomID objects by msellers » Mon, 2011-07-18 06:24 |
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16,649 |
by msellers Mon, 2014-04-21 06:47 |
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Creating FeatureReporters in PyRosetta by LiorZ » Tue, 2016-08-23 23:50 |
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6,124 |
by smlewis Wed, 2016-08-24 14:23 |
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Creating rotamers, computing pairwise and total energies by gerdos » Wed, 2017-04-12 02:57 |
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5,518 |
by gerdos Tue, 2017-04-18 10:15 |
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Custom Constraints by jinli711 » Wed, 2020-07-15 15:22 |
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2,105 |
by matteoferla Fri, 2020-10-09 05:20 |
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Customize Rosetta codes and make it accessible to PyRosetta by xfliu » Thu, 2012-05-24 06:27 |
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6,207 |
by Sergey Mon, 2014-04-21 06:47 |
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Cutout part of a protein by ac.research » Wed, 2017-05-31 11:55 |
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2,663 |
by jadolfbr Sat, 2017-06-03 19:20 |
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D070_Refinement.py by thorx020 » Fri, 2012-09-14 06:40 |
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2,457 |
by smlewis Mon, 2014-04-21 06:47 |
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De novo loop modeling using pyrosetta by bharat_46010 » Sun, 2011-01-16 17:38 |
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5,536 |
by Sergey Mon, 2014-04-21 06:47 |
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Decoy Clustering by jadolfbr » Mon, 2010-02-01 22:50 |
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5,690 |
by nawsad Mon, 2014-04-21 06:47 |
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Define custom potential? by rfschleif » Fri, 2011-05-06 11:25 |
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3,679 |
by weitzner Mon, 2014-04-21 06:47 |
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Deleting residue one produces a segmentation fault by rfschleif » Thu, 2011-06-16 07:02 |
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2,308 |
by smlewis Mon, 2014-04-21 06:47 |
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Deprotonated LYS by Arik » Wed, 2011-06-22 16:34 |
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4,585 |
by smlewis Mon, 2014-04-21 06:47 |
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Designating Fold Tree Edges as Flexible or Rigid by nleroy » Tue, 2019-07-23 11:34 |
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2,706 |
by smlewis Tue, 2019-07-23 13:27 |
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Determine residues where Backrub Mover is applied by jferrie » Fri, 2017-10-27 08:19 |
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1,683 |
by rmoretti Fri, 2017-12-01 10:25 |
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dG(partner) and ddG(bind) by levinthal » Sat, 2010-08-21 17:04 |
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5,413 |
by smlewis Mon, 2014-04-21 06:47 |
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Difference between GenericMonteCarloMover() and GenericSimulatedAnnealer() by ac.research » Fri, 2018-05-11 10:37 |
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4,020 |
by ac.research Fri, 2018-05-11 15:46 |
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Different types of MinMover by nasim.soltani58 » Sun, 2020-12-20 11:44 |
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1,676 |
by nasim.soltani58 Tue, 2020-12-22 13:37 |
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Displaying side-chain rotamers in PyMol by ajasja » Wed, 2014-09-24 08:57 |
0 |
2,763 |
by ajasja Wed, 2014-09-24 08:57 |
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Distance constraints for amino acids pairs by blubbi » Tue, 2010-05-18 05:39 |
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1,779 |
by blubbi Mon, 2014-04-21 06:47 |
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Disuplhide bonds by batch2k » Tue, 2009-12-15 09:57 |
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4,729 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Dock antibody at the epitope of antigen by styang » Fri, 2012-06-22 05:44 |
3 |
5,345 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking between peptide and lipid-biayer by sprinkle166 » Thu, 2017-10-26 08:35 |
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1,863 |
by rmoretti Fri, 2017-12-01 10:34 |
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DockingHighResLegacy repacks all sidechains on first apply(), interface sidechains on subsequent apply() by msellers » Wed, 2012-02-22 22:46 |
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5,241 |
by rmoretti Thu, 2019-05-09 15:03 |
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DockingSlideIntoContact does not work by batch2k » Wed, 2010-02-17 05:57 |
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1,613 |
by batch2k Mon, 2014-04-21 06:47 |
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Documentation of ``mysterious'' protocols by ñ » Wed, 2013-10-30 08:19 |
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4,114 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Does Rosetta scoring function can distinguish good structure from bad one? by Victor » Sun, 2013-06-16 21:11 |
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4,498 |
by Victor Mon, 2014-04-21 06:48 |
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Dose it support Fixed Backbone Ddg Prediction? by ppprotein » Fri, 2010-01-29 00:54 |
1 |
2,256 |
by sid Mon, 2014-04-21 06:47 |
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