You are here

PyRosetta - General

Topic / Topic startersort descending Replies Views Last post
Normal topic Ligand dihedral moves
by lah435 » Tue, 2015-03-03 11:56
1
1,738 by rmoretti
Fri, 2015-04-24 13:17
Normal topic London
by MarkW » Sun, 2015-02-08 14:14
0
1,589 by MarkW
Sun, 2015-02-08 14:14
Normal topic loop modeling error 'CcdLoopClosureMover' object is not callable
by jai_INMAS » Tue, 2013-10-22 01:49
2
2,565 by jai_INMAS
Mon, 2014-04-21 06:48
Normal topic MakeRotLib documentation for Pyrosetta
by ltassoulas » Sat, 2013-07-06 16:15
1
1,847 by jadolfbr
Mon, 2014-04-21 06:48
Hot topic Making mutations in PyRosetta?
by thorx020 » Thu, 2012-08-09 09:24
15
15,639 by ajasja
Mon, 2014-09-22 10:17
Normal topic Memory Issues PyRosetta?
by ast » Sat, 2012-03-24 03:21
1
1,685 by smlewis
Mon, 2014-04-21 06:47
Normal topic Minimization not changing jump edge vector length
by bio_james » Tue, 2017-12-12 09:32
1
1,117 by rmoretti
Sat, 2017-12-16 10:47
Normal topic Minimization question
by rfschleif » Wed, 2011-05-25 06:59
14
9,601 by Sergey
Mon, 2014-04-21 06:47
Normal topic Missing movers in OSX PyRosetta
by lah435 » Fri, 2012-11-16 15:45
2
2,900 by lah435
Mon, 2014-04-21 06:47
Normal topic Missing residue coordinates in PDB files
by lanselibai » Thu, 2014-09-04 07:34
1
4,381 by rmoretti
Thu, 2014-09-04 11:36
Normal topic Mistake about rosetta.init()
by sprinkle166 » Tue, 2017-09-26 09:46
3
2,287 by sprinkle166
Wed, 2017-09-27 09:17
Normal topic Modeling small molecules
by iGemBoulder » Wed, 2019-09-18 11:53
2
1,088 by rmoretti
Wed, 2019-09-18 14:24
Normal topic Molfile to params creating invalid params output
by edan » Sun, 2021-08-29 01:54
1
139 by tsztain
Sun, 2021-08-29 11:15
Hot topic Monte Carlo usage?
by atruong » Tue, 2012-08-28 13:24
29
20,690 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Motif Graft Mover error
by ac.research » Tue, 2019-03-26 13:25
1
1,064 by rmoretti
Thu, 2019-05-09 15:56
Normal topic Movemap Question
by jadolfbr » Thu, 2010-01-07 11:02
1
1,709 by smlewis
Mon, 2014-04-21 06:47
Normal topic Movers for unspecified DoF
by tfobe » Wed, 2019-04-17 17:30
2
1,128 by tfobe
Mon, 2019-05-20 16:05
Normal topic mutate_residue not working
by lanselibai » Mon, 2014-08-11 03:55
7
6,449 by lanselibai
Sun, 2014-08-17 07:30
Normal topic mutate_residue doesn't mutate
by dsim » Wed, 2015-03-18 02:32
6
5,530 by rmoretti
Fri, 2016-04-29 09:48
Normal topic Muting output in pyrosetta
by SenyorDrew » Mon, 2017-08-14 08:13
6
4,255 by SenyorDrew
Tue, 2017-08-15 07:41
Normal topic Namespace PyRosetta Build for Windows?
by protos_heis » Sat, 2015-08-15 10:49
3
3,201 by Sergey
Wed, 2015-08-19 15:47
Normal topic Need help figuring out the meaning and cause of an error
by AleksanderK » Fri, 2019-05-03 11:02
1
913 by rmoretti
Thu, 2019-05-09 14:32
Normal topic Neutralize the C and N termini
by rosettauser » Mon, 2011-07-25 07:24
1
1,946 by smlewis
Mon, 2014-04-21 06:47
Normal topic New files for loop modeling
by Victor » Fri, 2012-02-03 14:36
0
1,206 by Victor
Mon, 2014-04-21 06:47
Normal topic New Python 3.7
by ac.research » Wed, 2018-08-15 07:00
5
3,136 by MNP1986
Mon, 2018-12-03 04:02
Normal topic New Windows build is available for download
by Sergey » Fri, 2014-07-18 13:50
2
3,030 by ajasja
Fri, 2014-08-22 08:32
Normal topic newbie question re pose syntax
by Amy F » Mon, 2019-04-15 12:50
10
4,316 by jadolfbr
Wed, 2019-04-24 10:12
Normal topic No pdb output file when running ab initio modeling
by bunyaviridae » Thu, 2013-06-20 01:33
1
2,087 by rmoretti
Mon, 2014-04-21 06:48
Normal topic non canonical aa mutations/force fields/pyrosetta
by Anouk » Wed, 2013-06-19 01:51
12
10,063 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Non-standard amino acids
by mark.wilson » Mon, 2010-08-02 12:13
0
1,404 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic Nonstandard residue parameters fail
by lah435 » Wed, 2014-08-06 17:53
2
2,996 by lah435
Mon, 2014-08-18 17:23
Normal topic Noob question about optimizing a pose
by AleksanderK » Fri, 2019-04-26 10:49
3
1,491 by AleksanderK
Fri, 2019-05-03 10:57
Normal topic number of residues in a specific chain
by felipet » Mon, 2015-03-09 09:30
1
1,991 by jadolfbr
Mon, 2015-03-09 12:54
Normal topic option removal/KIC
by jadolfbr » Thu, 2012-02-02 16:35
6
4,004 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Output different favored solutions with PackRotamersMover design
by xfliu » Fri, 2012-07-13 06:23
5
4,645 by smlewis
Mon, 2014-04-21 06:47
Normal topic Output several poses in a silent file
by SenyorDrew » Tue, 2018-03-20 07:12
1
1,198 by Martin Floor
Tue, 2018-12-11 05:43
Normal topic Packing Fraction of atoms in a closed loop or turn
by bharat_46010 » Fri, 2013-08-09 17:40
1
2,268 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Parallel processing?
by mark.wilson » Mon, 2010-07-26 15:12
6
8,985 by msellers
Mon, 2014-04-21 06:47
Normal topic Parsing XML tags using pyrosetta
by rbehan » Mon, 2015-10-19 06:37
1
1,896 by rmoretti
Mon, 2015-10-19 08:25
Normal topic Passing a dictionary from pyrosetta to rosetta
by SenyorDrew » Mon, 2017-11-13 11:33
1
1,073 by rmoretti
Fri, 2017-12-01 10:10
Normal topic Peptide design
by AOK » Thu, 2011-02-03 11:35
3
3,567 by smlewis
Mon, 2014-04-21 06:47
Normal topic pose.replace_residue() & incorrect scoring
by msun » Tue, 2015-10-06 10:51
3
2,823 by rmoretti
Wed, 2015-10-07 16:35
Normal topic pose_from_pdb gives RuntimeError: unidentifiable C++ exception?
by cossio » Thu, 2014-11-27 14:43
1
2,254 by cossio
Fri, 2014-11-28 05:05
Normal topic pose_from_rcsb error
by criss.hartzell » Wed, 2020-04-22 15:12
1
736 by matteoferla
Thu, 2020-04-30 12:04
Normal topic pose_from_sequence with modified residue
by nawsad » Wed, 2014-06-25 02:59
4
3,785 by nawsad
Sun, 2014-07-13 00:49
Normal topic preparation the fragment files for mutants
by Victor » Wed, 2012-02-22 11:04
3
2,479 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem about Pyrosetta installation win7
by sprinkle166 » Mon, 2017-09-04 20:15
5
3,329 by sprinkle166
Fri, 2017-09-08 12:57
Normal topic Problem with sending individual energy terms using PyMOL Mover
by jadolfbr » Fri, 2011-12-23 10:54
2
2,201 by Sergey
Mon, 2014-04-21 06:47
Normal topic Problems when inserting spin-label R1A
by ajasja » Fri, 2014-06-27 04:14
2
2,433 by ajasja
Thu, 2014-07-03 05:36
Normal topic Problems with building bindings.
by AndrewBworth » Thu, 2010-02-04 17:26
0
1,430 by AndrewBworth
Mon, 2014-04-21 06:47
Normal topic problems with low-resolution loop refinemet (LoopMover_Perturb_CCD)
by aloctavodia » Thu, 2012-07-26 06:51
9
6,250 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Problems with SmoothFragmentMover
by epalovcak » Wed, 2013-10-02 09:20
3
3,389 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Protein docking with PyRosetta Error!
by Apiwat » Sat, 2014-01-11 23:32
3
3,749 by Apiwat
Mon, 2014-04-21 06:48
Normal topic protein structure prediction
by ravi1709 » Thu, 2011-07-28 00:05
1
1,930 by smlewis
Mon, 2014-04-21 06:47
Normal topic Protocol for adding/mutating non-canonical AA
by joeri » Thu, 2021-03-25 08:14
2
350 by vmulligan
Mon, 2021-03-29 10:39
Normal topic Protocol for adding/mutating non-canonical AA
by joeri » Thu, 2021-03-25 08:14
1
347 by matteoferla
Tue, 2021-03-30 08:20
Normal topic PSIPRED secondary structure prediction in PyRosetta
by ac.research » Fri, 2017-09-01 22:56
1
1,754 by rmoretti
Mon, 2017-09-04 09:52
Normal topic PyMOL did not work from a remote machine with PyRosetta
by Jeremy1990 » Sat, 2015-08-08 21:25
1
1,856 by rmoretti
Wed, 2015-08-12 10:29
Normal topic PyMOL Update
by ac.research » Tue, 2018-04-10 22:07
6
2,912 by Sergey
Tue, 2018-05-15 11:20
Normal topic PyMOLMover object has no attribute 'link'
by nleroy » Mon, 2019-07-22 07:51
0
577 by nleroy
Mon, 2019-07-22 07:51
Normal topic pymover = PyMOL_Mover() hangs IPython?
by cossio » Fri, 2015-04-10 07:38
4
3,672 by cossio
Wed, 2015-04-15 12:31
Normal topic Pypy not working, python works...
by MarkW » Thu, 2015-03-05 05:15
4
5,718 by MarkW
Mon, 2015-08-24 04:43
Normal topic PyRosetta + PyMol
by reve_etrange » Mon, 2009-11-23 16:44
3
3,500 by reve_etrange
Mon, 2014-04-21 06:47
Normal topic PyRosetta 1.1 for Windows?
by sylvia » Tue, 2010-02-09 16:06
0
1,135 by sylvia
Mon, 2014-04-21 06:47
Normal topic Pyrosetta 2.0 - Dunbrak library binary not loading - strange repacking score
by msellers » Wed, 2011-05-11 06:24
3
3,237 by smlewis
Mon, 2014-04-21 06:47
Normal topic PyRosetta 2.0 Beta Strand Build
by Qulprit » Tue, 2011-02-08 11:30
1
6,626 by weitzner
Mon, 2014-04-21 06:47
Normal topic PyRosetta AbInitio Folding protocol
by batch2k » Tue, 2009-12-15 11:09
7
9,802 by jadolfbr
Thu, 2015-02-05 10:32
Normal topic PyRosetta coding subtleties
by lah435 » Wed, 2013-03-27 02:59
2
3,566 by Sergey
Mon, 2014-04-21 06:47
Normal topic pyrosetta die slow
by Eden » Sun, 2021-06-13 00:05
2
256 by Eden
Mon, 2021-06-14 23:10
Normal topic Pyrosetta energy function
by somayyehzangooei » Mon, 2011-05-09 08:20
6
5,885 by smlewis
Mon, 2014-04-21 06:47
Normal topic PyRosetta FastDesign
by ac.research » Tue, 2017-07-04 10:23
9
6,194 by ac.research
Wed, 2017-07-05 16:59
Normal topic PyRosetta Global Docking
by ac.research » Sat, 2017-08-26 03:31
2
2,013 by Sergey
Thu, 2017-08-31 04:39
Normal topic Pyrosetta imported after rdkit
by matteoferla » Sun, 2020-03-01 02:38
0
550 by matteoferla
Sun, 2020-03-01 02:38
Normal topic PyRosetta license
by AOK » Fri, 2011-11-11 01:20
1
1,814 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic PyRosetta memory footprint
by LiorZ » Thu, 2016-06-16 04:36
3
2,688 by LiorZ
Fri, 2016-06-17 08:20
Normal topic PyRosetta on a HPC
by ac.research » Thu, 2019-03-14 02:00
1
928 by rmoretti
Wed, 2019-07-10 10:17
Normal topic Pyrosetta protocol to move protein-peptide docked complex closer to active site.
by eduardoftoliveira » Fri, 2018-06-29 02:50
0
1,290 by eduardoftoliveira
Fri, 2018-06-29 03:46
Normal topic Pyrosetta score protein structures with missing atoms in sidechain
by xuezhi » Fri, 2021-04-09 13:33
1
224 by matteoferla
Sat, 2021-04-10 07:18
Normal topic PyRosetta surface docking not working
by cgautier » Mon, 2015-03-16 05:45
6
5,912 by Sergey
Wed, 2015-03-18 11:22
Normal topic PyRosetta v1.1
by jadolfbr » Tue, 2010-02-09 08:02
0
1,149 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic PyRosetta version 2.011 for Mac/Linux is ready to download!
by Sergey » Mon, 2011-11-21 08:51
0
1,330 by Sergey
Mon, 2014-04-21 06:47
Normal topic Pyrosetta2
by bharat_46010 » Mon, 2011-02-28 05:00
1
1,919 by Sergey
Mon, 2014-04-21 06:47
Normal topic Python 2.6
by AndrewBworth » Mon, 2010-02-01 18:49
2
2,280 by AlexI
Mon, 2014-04-21 06:47
Normal topic Python3.8 release for Mac download is a dead link
by noahC_noahDo » Fri, 2020-06-26 18:20
0
393 by noahC_noahDo
Fri, 2020-06-26 18:20
Normal topic Quadratic Function for Distance Constraints?
by protos_heis » Mon, 2014-01-27 06:21
4
3,233 by protos_heis
Mon, 2014-04-21 06:48
Normal topic Question about gradient of energy function
by kyler » Tue, 2017-08-22 14:09
7
4,636 by rmoretti
Tue, 2017-09-05 10:05
Normal topic Question about the error when using pyrosetta.distributed.io
by cuiyoutian » Sun, 2019-05-19 00:54
1
1,100 by rmoretti
Mon, 2019-06-24 12:54
Normal topic Question Regarding Usage of Specific Rosetta Tools in PyRosetta
by jurkm » Thu, 2010-07-22 23:54
0
1,255 by jurkm
Mon, 2014-04-21 06:47
Normal topic Questions on rotamer-rotamer energies
by pachecoj » Fri, 2013-07-26 05:01
3
3,430 by rmoretti
Mon, 2014-04-21 06:48
Normal topic read parameters of metal ions
by Stefan » Tue, 2011-07-19 08:38
2
3,109 by Stefan
Mon, 2014-04-21 06:47
Normal topic Reading constraints from a file
by lah435 » Wed, 2017-06-14 18:56
2
1,963 by rmoretti
Fri, 2017-06-16 07:22
Normal topic Reading poses from silent file that need a params file
by Martin Floor » Mon, 2018-08-13 12:25
2
2,008 by Martin Floor
Mon, 2018-08-27 10:51
Normal topic Reducing PyRosetta memory usage
by ajasja » Fri, 2014-10-03 01:51
4
4,304 by Sergey
Fri, 2015-04-10 11:25
Normal topic Regarding the Documentation of Rosetta and PyRosetta
by jai_INMAS » Tue, 2013-10-22 23:41
3
3,078 by jai_INMAS
Mon, 2014-04-21 06:48
Normal topic Relax with constraints
by yijietseng » Tue, 2019-05-07 11:16
2
1,521 by yijietseng
Wed, 2019-05-22 09:54
Normal topic Relax with constraints in PyRosetta
by ac.research » Tue, 2017-11-21 10:17
1
2,147 by rmoretti
Sat, 2017-12-09 01:50
Normal topic Relaxing experimental structure
by aloctavodia » Thu, 2016-09-29 03:46
8
5,665 by aloctavodia
Thu, 2016-10-06 03:29
Normal topic RemodelMover() and the blueprint file
by ac.research » Wed, 2018-06-27 03:55
1
1,274 by rmoretti
Sat, 2018-06-30 02:38
Normal topic Repeat study
by thomashrabe » Tue, 2017-06-20 11:21
2
1,612 by parmef
Sat, 2017-06-24 03:18
Normal topic Replace the rotamer of a particular residue in a pose
by AyushGoyal » Wed, 2014-04-02 23:45
1
1,663 by rmoretti
Thu, 2014-04-03 07:27
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - PyRosetta - General