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Topic / Topic starter | Replies | Views | Last post | |
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Deleting residue one produces a segmentation fault by rfschleif » Thu, 2011-06-16 07:02 |
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2,420 |
by smlewis Mon, 2014-04-21 06:47 |
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Units of kT for MC mover by msellers » Fri, 2010-12-10 05:40 |
1 |
3,909 |
by smlewis Mon, 2014-04-21 06:47 |
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How to call SnugDock from PyRosetta by SenyorDrew » Tue, 2016-06-21 07:28 |
1 |
2,222 |
by jeliazkov Fri, 2016-07-01 08:42 |
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GenericMonteCarloMover accept/reject moves by ac.research » Fri, 2018-06-08 06:04 |
1 |
2,131 |
by rmoretti Sat, 2018-06-30 02:37 |
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"corrupted" small molecules. aromatic rings get distortet during relax by patcD » Thu, 2022-07-21 04:51 |
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3,257 |
by rmoretti Thu, 2022-07-21 07:14 |
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Extending Pyrosetta toturials for docking by adding constraints by nasim.soltani58 » Thu, 2020-11-26 13:16 |
1 |
1,409 |
by matteoferla Wed, 2020-12-02 13:49 |
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PyRosetta 2.0 Beta Strand Build by Qulprit » Tue, 2011-02-08 11:30 |
1 |
7,298 |
by weitzner Mon, 2014-04-21 06:47 |
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Glycan minimization by seanle24245 » Thu, 2016-10-06 13:51 |
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2,116 |
by Labonte Thu, 2016-10-06 14:05 |
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Changing the membrane Thickness (THKN) by jlapin » Mon, 2018-11-12 06:32 |
1 |
2,006 |
by ralford Wed, 2018-12-19 03:20 |
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installing PyRosetta on non-Intel-based Mac platform by sid » Tue, 2009-10-06 09:07 |
1 |
2,284 |
by JeffreyGray Mon, 2014-04-21 06:47 |
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Passing a dictionary from pyrosetta to rosetta by SenyorDrew » Mon, 2017-11-13 11:33 |
1 |
1,750 |
by rmoretti Fri, 2017-12-01 10:10 |
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Pyrosetta score protein structures with missing atoms in sidechain by xuezhi » Fri, 2021-04-09 13:33 |
1 |
1,320 |
by matteoferla Sat, 2021-04-10 07:18 |
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JobDistributor Bug by brettth » Fri, 2011-03-11 07:00 |
1 |
3,283 |
by smlewis Mon, 2014-04-21 06:47 |
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Help on Chimera Creator/Homodomain script by jadolfbr » Mon, 2010-06-14 21:34 |
1 |
3,253 |
by mark.wilson Mon, 2014-04-21 06:47 |
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ΔG Calculation with PyRosetta by Sandra » Tue, 2019-05-21 00:26 |
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2,381 |
by rmoretti Mon, 2019-06-24 12:47 |
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Movemap Question by jadolfbr » Thu, 2010-01-07 11:02 |
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2,372 |
by smlewis Mon, 2014-04-21 06:47 |
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Calculating sasa per atom and atomid_map by ioannis.f » Wed, 2014-08-13 05:26 |
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2,712 |
by Sergey Thu, 2014-08-14 11:54 |
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Molfile to params creating invalid params output by edan » Sun, 2021-08-29 01:54 |
1 |
1,288 |
by tsztain Sun, 2021-08-29 11:15 |
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Scoring after switching back to fullatom by thorx020 » Thu, 2013-10-03 08:06 |
1 |
2,331 |
by jadolfbr Mon, 2014-04-21 06:48 |
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fragment for polyAAA by knutjbj » Mon, 2010-11-29 08:23 |
1 |
2,486 |
by smlewis Mon, 2014-04-21 06:47 |
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Atom mapping in RMSD functions by gkell » Tue, 2022-02-15 15:48 |
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1,174 |
by rmoretti Fri, 2022-02-18 10:23 |
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Charmm, hydroxyproline, hydrogen atom ID by rfschleif » Tue, 2011-07-12 11:26 |
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3,638 |
by rfschleif Mon, 2014-04-21 06:47 |
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Script running, but returns no results by chinhsutran » Fri, 2013-11-22 06:25 |
1 |
2,316 |
by rmoretti Mon, 2014-04-21 06:48 |
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Convert Rotamer Vector to Chi Angles by L-Allanine » Sat, 2016-07-30 09:16 |
1 |
2,237 |
by rmoretti Mon, 2016-09-05 10:35 |
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[Solved] Docking to a trimer by batch2k » Wed, 2010-02-17 02:18 |
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2,253 |
by batch2k Mon, 2014-04-21 06:47 |
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Docking between peptide and lipid-biayer by sprinkle166 » Thu, 2017-10-26 08:35 |
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1,988 |
by rmoretti Fri, 2017-12-01 10:34 |
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Protocol for adding/mutating non-canonical AA by joeri » Thu, 2021-03-25 08:14 |
1 |
1,693 |
by matteoferla Tue, 2021-03-30 08:20 |
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MakeRotLib documentation for Pyrosetta by ltassoulas » Sat, 2013-07-06 16:15 |
1 |
2,571 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Libmini crashes after protocol run by whooper » Tue, 2017-01-31 09:48 |
1 |
2,073 |
by Sergey Tue, 2017-01-31 13:42 |
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What is the meaning of "JUMP" in rigid.RigidBodyTransMover(pose,JUMP)? by lanselibai » Sat, 2023-10-28 09:49 |
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469 |
by rmoretti Mon, 2023-10-30 08:43 |
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protein structure prediction by ravi1709 » Thu, 2011-07-28 00:05 |
1 |
2,601 |
by smlewis Mon, 2014-04-21 06:47 |
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PyRosetta license by AOK » Fri, 2011-11-11 01:20 |
1 |
2,557 |
by JeffreyGray Mon, 2014-04-21 06:47 |
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Hydrogen Bonding Distances and Atom identification by kmolloy717 » Fri, 2021-06-25 08:15 |
1 |
1,508 |
by matteoferla Wed, 2021-06-30 09:02 |
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ClassicRelax with ligand by S » Mon, 2010-09-27 07:55 |
1 |
2,248 |
by smlewis Mon, 2014-04-21 06:47 |
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Parsing XML tags using pyrosetta by rbehan » Mon, 2015-10-19 06:37 |
1 |
2,946 |
by rmoretti Mon, 2015-10-19 08:25 |
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Dose it support Fixed Backbone Ddg Prediction? by ppprotein » Fri, 2010-01-29 00:54 |
1 |
2,370 |
by sid Mon, 2014-04-21 06:47 |
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Jump question by rfschleif » Wed, 2011-06-15 14:00 |
1 |
2,854 |
by smlewis Mon, 2014-04-21 06:47 |
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Memory Issues PyRosetta? by ast » Sat, 2012-03-24 03:21 |
1 |
2,382 |
by smlewis Mon, 2014-04-21 06:47 |
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403 on documentation for PyRosetta by matteoferla » Mon, 2022-06-06 12:19 |
1 |
2,551 |
by rmoretti Mon, 2022-06-06 12:35 |
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Pyrosetta2 by bharat_46010 » Mon, 2011-02-28 05:00 |
1 |
2,598 |
by Sergey Mon, 2014-04-21 06:47 |
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hydrogen bond parameters used in detecting h-bonds by pyrosetta by bharat_46010 » Sun, 2013-07-21 23:44 |
1 |
2,698 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Motif Graft Mover error by ac.research » Tue, 2019-03-26 13:25 |
1 |
2,213 |
by rmoretti Thu, 2019-05-09 15:56 |
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Question about the error when using pyrosetta.distributed.io by cuiyoutian » Sun, 2019-05-19 00:54 |
1 |
2,530 |
by rmoretti Mon, 2019-06-24 12:54 |
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Falling at the first hurdle by pardave » Tue, 2010-01-05 00:53 |
1 |
2,461 |
by jadolfbr Mon, 2014-04-21 06:47 |
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task_pack.restrict_to_repacking() not working by lanselibai » Mon, 2014-08-11 08:06 |
1 |
2,214 |
by rmoretti Tue, 2014-08-12 08:35 |
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generate_nonstandard_residue_set() takes exactly 2 arguments (1given) by yanghaobjordan » Mon, 2018-01-29 18:59 |
1 |
2,457 |
by rmoretti Tue, 2018-01-30 06:29 |
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Explicit water This topic has been moved to "Rosetta 3 - General " (View topic) |
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Cannot get PyMOL_Observer to work on MacOS by cno » Thu, 2012-02-16 09:15 |
1 |
2,440 |
by Sergey Mon, 2014-04-21 06:47 |
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Viewing and modifying hydrogen bond detection criteria by promero » Tue, 2014-09-16 15:26 |
1 |
3,132 |
by rmoretti Wed, 2014-09-17 07:29 |
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How to set options under PyRosetta by lennylv » Thu, 2011-01-06 18:11 |
1 |
3,774 |
by Sergey Mon, 2014-04-21 06:47 |
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segfault in loop by reve_etrange » Sat, 2010-02-13 21:49 |
1 |
2,256 |
by reve_etrange Mon, 2014-04-21 06:47 |
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RemodelMover() and the blueprint file by ac.research » Wed, 2018-06-27 03:55 |
1 |
2,139 |
by rmoretti Sat, 2018-06-30 02:38 |
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Error with importing the pdb file by nasim.soltani58 » Fri, 2020-12-18 22:46 |
1 |
1,888 |
by matteoferla Tue, 2021-01-05 04:05 |
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Windows version of PyRosetta 2.0 is ready for download! by Sergey » Fri, 2011-02-11 15:58 |
0 |
1,851 |
by Sergey Mon, 2014-04-21 06:47 |
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Gunn fragment insertion by jadolfbr » Sun, 2010-02-28 09:39 |
0 |
1,738 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Minimizing a Symmetric Structure by ammar.x.gilani » Wed, 2023-08-02 11:10 |
0 |
321 |
by ammar.x.gilani Wed, 2023-08-02 11:10 |
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Suggestion: setting Sphinx documentation to not skip __init__ by matteoferla » Mon, 2020-08-24 09:02 |
0 |
1,636 |
by matteoferla Mon, 2020-08-24 09:02 |
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How to tell where and what fragment or rotamer was inserted? by charlie.strauss » Wed, 2010-01-27 10:36 |
0 |
1,729 |
by charlie.strauss Mon, 2014-04-21 06:47 |
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Displaying side-chain rotamers in PyMol by ajasja » Wed, 2014-09-24 08:57 |
0 |
2,932 |
by ajasja Wed, 2014-09-24 08:57 |
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Python3.8 release for Mac download is a dead link by noahC_noahDo » Fri, 2020-06-26 18:20 |
0 |
1,092 |
by noahC_noahDo Fri, 2020-06-26 18:20 |
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ImportError PyUnicodeUCS2 by nunesjulioc » Wed, 2010-02-17 07:29 |
0 |
2,936 |
by nunesjulioc Mon, 2014-04-21 06:47 |
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Scoring with CCP4 electron density maps constraints by xfliu » Thu, 2012-05-03 03:30 |
0 |
2,163 |
by xfliu Mon, 2014-04-21 06:47 |
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Set torsions for atoms in different residues by mluengo » Fri, 2023-05-12 03:07 |
0 |
381 |
by mluengo Fri, 2023-05-12 03:07 |
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Frequently Asked Questions by sid » Fri, 2009-10-02 09:00 |
0 |
2,267 |
by sid Mon, 2014-04-21 06:47 |
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how to use constrains in PyRosetta? by ast » Mon, 2011-09-05 07:22 |
0 |
2,181 |
by ast Mon, 2014-04-21 06:47 |
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How can I insert my variable length fragmrnts library into pyrosetta? by michelleqyh » Tue, 2020-08-04 07:26 |
0 |
952 |
by michelleqyh Tue, 2020-08-04 07:26 |
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cleanATOM() for non-ideal amino acids by ac.research » Thu, 2018-03-29 07:50 |
0 |
1,417 |
by ac.research Thu, 2018-03-29 07:50 |
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Architecture question by jwillis » Thu, 2010-02-25 09:43 |
0 |
1,850 |
by jwillis Mon, 2014-04-21 06:47 |
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Compile C++ Rosetta to Pyrosetta by michelleqyh » Fri, 2020-08-21 08:44 |
0 |
1,088 |
by michelleqyh Fri, 2020-08-21 08:44 |
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Question Regarding Usage of Specific Rosetta Tools in PyRosetta by jurkm » Thu, 2010-07-22 23:54 |
0 |
1,695 |
by jurkm Mon, 2014-04-21 06:47 |
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Can we have email alert for the reply? by lanselibai » Wed, 2014-08-13 13:24 |
0 |
1,795 |
by lanselibai Wed, 2014-08-13 13:24 |
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Symmetry breaks due to small structure gaps by dbiedermann » Mon, 2021-09-20 17:39 |
0 |
831 |
by dbiedermann Mon, 2021-09-20 17:40 |
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Problems with building bindings. by AndrewBworth » Thu, 2010-02-04 17:26 |
0 |
1,909 |
by AndrewBworth Mon, 2014-04-21 06:47 |
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DockingSlideIntoContact does not work by batch2k » Wed, 2010-02-17 05:57 |
0 |
1,681 |
by batch2k Mon, 2014-04-21 06:47 |
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Announcements by sid » Fri, 2009-10-02 08:54 |
0 |
1,692 |
by sid Mon, 2014-04-21 06:47 |
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dump_pdb problems by srballard » Fri, 2010-05-28 14:04 |
0 |
2,166 |
by srballard Mon, 2014-04-21 06:47 |
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Segmentation fault encountered using Interface by WenyuanW » Tue, 2024-04-02 13:41 |
0 |
40 |
by WenyuanW Tue, 2024-04-02 13:41 |
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PyRosetta version 2.011 for Mac/Linux is ready to download! by Sergey » Mon, 2011-11-21 08:51 |
0 |
1,762 |
by Sergey Mon, 2014-04-21 06:47 |
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small molecule docking by sharang » Mon, 2010-08-02 14:57 |
0 |
1,882 |
by sharang Mon, 2014-04-21 06:47 |
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Updating Coords by jadolfbr » Sat, 2010-01-30 10:33 |
0 |
1,967 |
by jadolfbr Mon, 2014-04-21 06:47 |
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New files for loop modeling by Victor » Fri, 2012-02-03 14:36 |
0 |
1,619 |
by Victor Mon, 2014-04-21 06:47 |
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Pyrosetta imported after rdkit by matteoferla » Sun, 2020-03-01 02:38 |
0 |
1,241 |
by matteoferla Sun, 2020-03-01 02:38 |
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PyRosetta 1.1 for Windows? by sylvia » Tue, 2010-02-09 16:06 |
0 |
1,581 |
by sylvia Mon, 2014-04-21 06:47 |
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London by MarkW » Sun, 2015-02-08 14:14 |
0 |
2,050 |
by MarkW Sun, 2015-02-08 14:14 |
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PyMOLMover object has no attribute 'link' by nleroy » Mon, 2019-07-22 07:51 |
0 |
1,255 |
by nleroy Mon, 2019-07-22 07:51 |
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Structure not changing after pose.set_phi by publicclass » Thu, 2020-11-05 09:34 |
0 |
1,083 |
by publicclass Thu, 2020-11-05 09:34 |
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How to fold-and-dock in PyRosetta? by sarah_b » Thu, 2020-05-14 02:37 |
0 |
1,274 |
by sarah_b Thu, 2020-05-14 02:37 |
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Pyrosetta protocol to move protein-peptide docked complex closer to active site. by eduardoftoliveira » Fri, 2018-06-29 02:50 |
0 |
2,018 |
by eduardoftoliveira Fri, 2018-06-29 03:46 |
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Segfault when loading scorefxn() and load_from_pdb() by mm » Wed, 2020-07-22 03:00 |
0 |
1,044 |
by mm Wed, 2020-07-22 03:02 |
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Distance constraints for amino acids pairs by blubbi » Tue, 2010-05-18 05:39 |
0 |
1,851 |
by blubbi Mon, 2014-04-21 06:47 |
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trRosetta modelling with a ligand by ShiranBZ » Tue, 2020-08-25 01:44 |
0 |
1,433 |
by ShiranBZ Tue, 2020-08-25 01:44 |
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Non-standard amino acids by mark.wilson » Mon, 2010-08-02 12:13 |
0 |
1,854 |
by mark.wilson Mon, 2014-04-21 06:47 |
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Collect data about the modelling by Roberto » Thu, 2022-01-06 01:43 |
0 |
731 |
by Roberto Thu, 2022-01-06 01:43 |
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PyRosetta v1.1 by jadolfbr » Tue, 2010-02-09 08:02 |
0 |
1,620 |
by jadolfbr Mon, 2014-04-21 06:47 |
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building a 77 amino acid long fragment by tevang » Fri, 2010-02-19 06:37 |
0 |
1,712 |
by tevang Mon, 2014-04-21 06:47 |
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rosetta.core.pack.pack_rotamers_setup(pose, score_fxn, task_design, rotsets) not working by tschiex » Sun, 2017-11-05 08:29 |
0 |
1,346 |
by tschiex Sun, 2017-11-05 08:29 |
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Best way to store a pose by Pyrosetta for Pyrosetta by matteoferla » Wed, 2021-04-07 06:50 |
0 |
2,125 |
by matteoferla Wed, 2021-04-07 06:50 |
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analysis utilities for trajectories by cbala » Mon, 2010-06-14 02:58 |
0 |
1,793 |
by cbala Mon, 2014-04-21 06:47 |
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residue selection / secondary structure constraints by sharang » Thu, 2010-08-05 10:16 |
0 |
1,822 |
by sharang Mon, 2014-04-21 06:47 |
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WindowsError: [Error 32] by jetu20 » Sun, 2020-10-11 21:02 |
0 |
1,074 |
by jetu20 Sun, 2020-10-11 21:02 |
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