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PyRosetta - General

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Normal topic Deleting residue one produces a segmentation fault
by rfschleif » Thu, 2011-06-16 07:02
1
2,420 by smlewis
Mon, 2014-04-21 06:47
Normal topic Units of kT for MC mover
by msellers » Fri, 2010-12-10 05:40
1
3,909 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to call SnugDock from PyRosetta
by SenyorDrew » Tue, 2016-06-21 07:28
1
2,222 by jeliazkov
Fri, 2016-07-01 08:42
Normal topic GenericMonteCarloMover accept/reject moves
by ac.research » Fri, 2018-06-08 06:04
1
2,131 by rmoretti
Sat, 2018-06-30 02:37
Normal topic "corrupted" small molecules. aromatic rings get distortet during relax
by patcD » Thu, 2022-07-21 04:51
1
3,257 by rmoretti
Thu, 2022-07-21 07:14
Normal topic Extending Pyrosetta toturials for docking by adding constraints
by nasim.soltani58 » Thu, 2020-11-26 13:16
1
1,409 by matteoferla
Wed, 2020-12-02 13:49
Normal topic PyRosetta 2.0 Beta Strand Build
by Qulprit » Tue, 2011-02-08 11:30
1
7,298 by weitzner
Mon, 2014-04-21 06:47
Normal topic Glycan minimization
by seanle24245 » Thu, 2016-10-06 13:51
1
2,116 by Labonte
Thu, 2016-10-06 14:05
Normal topic Changing the membrane Thickness (THKN)
by jlapin » Mon, 2018-11-12 06:32
1
2,006 by ralford
Wed, 2018-12-19 03:20
Normal topic installing PyRosetta on non-Intel-based Mac platform
by sid » Tue, 2009-10-06 09:07
1
2,284 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic Passing a dictionary from pyrosetta to rosetta
by SenyorDrew » Mon, 2017-11-13 11:33
1
1,750 by rmoretti
Fri, 2017-12-01 10:10
Normal topic Pyrosetta score protein structures with missing atoms in sidechain
by xuezhi » Fri, 2021-04-09 13:33
1
1,320 by matteoferla
Sat, 2021-04-10 07:18
Normal topic JobDistributor Bug
by brettth » Fri, 2011-03-11 07:00
1
3,283 by smlewis
Mon, 2014-04-21 06:47
Normal topic Help on Chimera Creator/Homodomain script
by jadolfbr » Mon, 2010-06-14 21:34
1
3,253 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic ΔG Calculation with PyRosetta
by Sandra » Tue, 2019-05-21 00:26
1
2,381 by rmoretti
Mon, 2019-06-24 12:47
Normal topic Movemap Question
by jadolfbr » Thu, 2010-01-07 11:02
1
2,372 by smlewis
Mon, 2014-04-21 06:47
Normal topic Calculating sasa per atom and atomid_map
by ioannis.f » Wed, 2014-08-13 05:26
1
2,712 by Sergey
Thu, 2014-08-14 11:54
Normal topic Molfile to params creating invalid params output
by edan » Sun, 2021-08-29 01:54
1
1,288 by tsztain
Sun, 2021-08-29 11:15
Normal topic Scoring after switching back to fullatom
by thorx020 » Thu, 2013-10-03 08:06
1
2,331 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic fragment for polyAAA
by knutjbj » Mon, 2010-11-29 08:23
1
2,486 by smlewis
Mon, 2014-04-21 06:47
Normal topic Atom mapping in RMSD functions
by gkell » Tue, 2022-02-15 15:48
1
1,174 by rmoretti
Fri, 2022-02-18 10:23
Normal topic Charmm, hydroxyproline, hydrogen atom ID
by rfschleif » Tue, 2011-07-12 11:26
1
3,638 by rfschleif
Mon, 2014-04-21 06:47
Normal topic Script running, but returns no results
by chinhsutran » Fri, 2013-11-22 06:25
1
2,316 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Convert Rotamer Vector to Chi Angles
by L-Allanine » Sat, 2016-07-30 09:16
1
2,237 by rmoretti
Mon, 2016-09-05 10:35
Normal topic [Solved] Docking to a trimer
by batch2k » Wed, 2010-02-17 02:18
1
2,253 by batch2k
Mon, 2014-04-21 06:47
Normal topic Docking between peptide and lipid-biayer
by sprinkle166 » Thu, 2017-10-26 08:35
1
1,988 by rmoretti
Fri, 2017-12-01 10:34
Normal topic Protocol for adding/mutating non-canonical AA
by joeri » Thu, 2021-03-25 08:14
1
1,693 by matteoferla
Tue, 2021-03-30 08:20
Normal topic MakeRotLib documentation for Pyrosetta
by ltassoulas » Sat, 2013-07-06 16:15
1
2,571 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Libmini crashes after protocol run
by whooper » Tue, 2017-01-31 09:48
1
2,073 by Sergey
Tue, 2017-01-31 13:42
Normal topic What is the meaning of "JUMP" in rigid.RigidBodyTransMover(pose,JUMP)?
by lanselibai » Sat, 2023-10-28 09:49
1
469 by rmoretti
Mon, 2023-10-30 08:43
Normal topic protein structure prediction
by ravi1709 » Thu, 2011-07-28 00:05
1
2,601 by smlewis
Mon, 2014-04-21 06:47
Normal topic PyRosetta license
by AOK » Fri, 2011-11-11 01:20
1
2,557 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic Hydrogen Bonding Distances and Atom identification
by kmolloy717 » Fri, 2021-06-25 08:15
1
1,508 by matteoferla
Wed, 2021-06-30 09:02
Normal topic ClassicRelax with ligand
by S » Mon, 2010-09-27 07:55
1
2,248 by smlewis
Mon, 2014-04-21 06:47
Normal topic Parsing XML tags using pyrosetta
by rbehan » Mon, 2015-10-19 06:37
1
2,946 by rmoretti
Mon, 2015-10-19 08:25
Normal topic Dose it support Fixed Backbone Ddg Prediction?
by ppprotein » Fri, 2010-01-29 00:54
1
2,370 by sid
Mon, 2014-04-21 06:47
Normal topic Jump question
by rfschleif » Wed, 2011-06-15 14:00
1
2,854 by smlewis
Mon, 2014-04-21 06:47
Normal topic Memory Issues PyRosetta?
by ast » Sat, 2012-03-24 03:21
1
2,382 by smlewis
Mon, 2014-04-21 06:47
Normal topic 403 on documentation for PyRosetta
by matteoferla » Mon, 2022-06-06 12:19
1
2,551 by rmoretti
Mon, 2022-06-06 12:35
Normal topic Pyrosetta2
by bharat_46010 » Mon, 2011-02-28 05:00
1
2,598 by Sergey
Mon, 2014-04-21 06:47
Normal topic hydrogen bond parameters used in detecting h-bonds by pyrosetta
by bharat_46010 » Sun, 2013-07-21 23:44
1
2,698 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Motif Graft Mover error
by ac.research » Tue, 2019-03-26 13:25
1
2,213 by rmoretti
Thu, 2019-05-09 15:56
Normal topic Question about the error when using pyrosetta.distributed.io
by cuiyoutian » Sun, 2019-05-19 00:54
1
2,530 by rmoretti
Mon, 2019-06-24 12:54
Normal topic Falling at the first hurdle
by pardave » Tue, 2010-01-05 00:53
1
2,461 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic task_pack.restrict_to_repacking() not working
by lanselibai » Mon, 2014-08-11 08:06
1
2,214 by rmoretti
Tue, 2014-08-12 08:35
Normal topic generate_nonstandard_residue_set() takes exactly 2 arguments (1given)
by yanghaobjordan » Mon, 2018-01-29 18:59
1
2,457 by rmoretti
Tue, 2018-01-30 06:29
Normal topic Explicit water
This topic has been moved to "Rosetta 3 - General " (View topic)
Normal topic Cannot get PyMOL_Observer to work on MacOS
by cno » Thu, 2012-02-16 09:15
1
2,440 by Sergey
Mon, 2014-04-21 06:47
Normal topic Viewing and modifying hydrogen bond detection criteria
by promero » Tue, 2014-09-16 15:26
1
3,132 by rmoretti
Wed, 2014-09-17 07:29
Normal topic How to set options under PyRosetta
by lennylv » Thu, 2011-01-06 18:11
1
3,774 by Sergey
Mon, 2014-04-21 06:47
Normal topic segfault in loop
by reve_etrange » Sat, 2010-02-13 21:49
1
2,256 by reve_etrange
Mon, 2014-04-21 06:47
Normal topic RemodelMover() and the blueprint file
by ac.research » Wed, 2018-06-27 03:55
1
2,139 by rmoretti
Sat, 2018-06-30 02:38
Normal topic Error with importing the pdb file
by nasim.soltani58 » Fri, 2020-12-18 22:46
1
1,888 by matteoferla
Tue, 2021-01-05 04:05
Normal topic Windows version of PyRosetta 2.0 is ready for download!
by Sergey » Fri, 2011-02-11 15:58
0
1,851 by Sergey
Mon, 2014-04-21 06:47
Normal topic Gunn fragment insertion
by jadolfbr » Sun, 2010-02-28 09:39
0
1,738 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Minimizing a Symmetric Structure
by ammar.x.gilani » Wed, 2023-08-02 11:10
0
321 by ammar.x.gilani
Wed, 2023-08-02 11:10
Normal topic Suggestion: setting Sphinx documentation to not skip __init__
by matteoferla » Mon, 2020-08-24 09:02
0
1,636 by matteoferla
Mon, 2020-08-24 09:02
Normal topic How to tell where and what fragment or rotamer was inserted?
by charlie.strauss » Wed, 2010-01-27 10:36
0
1,729 by charlie.strauss
Mon, 2014-04-21 06:47
Normal topic Displaying side-chain rotamers in PyMol
by ajasja » Wed, 2014-09-24 08:57
0
2,932 by ajasja
Wed, 2014-09-24 08:57
Normal topic Python3.8 release for Mac download is a dead link
by noahC_noahDo » Fri, 2020-06-26 18:20
0
1,092 by noahC_noahDo
Fri, 2020-06-26 18:20
Normal topic ImportError PyUnicodeUCS2
by nunesjulioc » Wed, 2010-02-17 07:29
0
2,936 by nunesjulioc
Mon, 2014-04-21 06:47
Normal topic Scoring with CCP4 electron density maps constraints
by xfliu » Thu, 2012-05-03 03:30
0
2,163 by xfliu
Mon, 2014-04-21 06:47
Normal topic Set torsions for atoms in different residues
by mluengo » Fri, 2023-05-12 03:07
0
381 by mluengo
Fri, 2023-05-12 03:07
Normal topic Frequently Asked Questions
by sid » Fri, 2009-10-02 09:00
0
2,267 by sid
Mon, 2014-04-21 06:47
Normal topic how to use constrains in PyRosetta?
by ast » Mon, 2011-09-05 07:22
0
2,181 by ast
Mon, 2014-04-21 06:47
Normal topic How can I insert my variable length fragmrnts library into pyrosetta?
by michelleqyh » Tue, 2020-08-04 07:26
0
952 by michelleqyh
Tue, 2020-08-04 07:26
Normal topic cleanATOM() for non-ideal amino acids
by ac.research » Thu, 2018-03-29 07:50
0
1,417 by ac.research
Thu, 2018-03-29 07:50
Normal topic Architecture question
by jwillis » Thu, 2010-02-25 09:43
0
1,850 by jwillis
Mon, 2014-04-21 06:47
Normal topic Compile C++ Rosetta to Pyrosetta
by michelleqyh » Fri, 2020-08-21 08:44
0
1,088 by michelleqyh
Fri, 2020-08-21 08:44
Normal topic Question Regarding Usage of Specific Rosetta Tools in PyRosetta
by jurkm » Thu, 2010-07-22 23:54
0
1,695 by jurkm
Mon, 2014-04-21 06:47
Normal topic Can we have email alert for the reply?
by lanselibai » Wed, 2014-08-13 13:24
0
1,795 by lanselibai
Wed, 2014-08-13 13:24
Normal topic Symmetry breaks due to small structure gaps
by dbiedermann » Mon, 2021-09-20 17:39
0
831 by dbiedermann
Mon, 2021-09-20 17:40
Normal topic Problems with building bindings.
by AndrewBworth » Thu, 2010-02-04 17:26
0
1,909 by AndrewBworth
Mon, 2014-04-21 06:47
Normal topic DockingSlideIntoContact does not work
by batch2k » Wed, 2010-02-17 05:57
0
1,681 by batch2k
Mon, 2014-04-21 06:47
Normal topic Announcements
by sid » Fri, 2009-10-02 08:54
0
1,692 by sid
Mon, 2014-04-21 06:47
Normal topic dump_pdb problems
by srballard » Fri, 2010-05-28 14:04
0
2,166 by srballard
Mon, 2014-04-21 06:47
Normal topic Segmentation fault encountered using Interface
by WenyuanW » Tue, 2024-04-02 13:41
0
40 by WenyuanW
Tue, 2024-04-02 13:41
Normal topic PyRosetta version 2.011 for Mac/Linux is ready to download!
by Sergey » Mon, 2011-11-21 08:51
0
1,762 by Sergey
Mon, 2014-04-21 06:47
Normal topic small molecule docking
by sharang » Mon, 2010-08-02 14:57
0
1,882 by sharang
Mon, 2014-04-21 06:47
Normal topic Updating Coords
by jadolfbr » Sat, 2010-01-30 10:33
0
1,967 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic New files for loop modeling
by Victor » Fri, 2012-02-03 14:36
0
1,619 by Victor
Mon, 2014-04-21 06:47
Normal topic Pyrosetta imported after rdkit
by matteoferla » Sun, 2020-03-01 02:38
0
1,241 by matteoferla
Sun, 2020-03-01 02:38
Normal topic PyRosetta 1.1 for Windows?
by sylvia » Tue, 2010-02-09 16:06
0
1,581 by sylvia
Mon, 2014-04-21 06:47
Normal topic London
by MarkW » Sun, 2015-02-08 14:14
0
2,050 by MarkW
Sun, 2015-02-08 14:14
Normal topic PyMOLMover object has no attribute 'link'
by nleroy » Mon, 2019-07-22 07:51
0
1,255 by nleroy
Mon, 2019-07-22 07:51
Normal topic Structure not changing after pose.set_phi
by publicclass » Thu, 2020-11-05 09:34
0
1,083 by publicclass
Thu, 2020-11-05 09:34
Normal topic How to fold-and-dock in PyRosetta?
by sarah_b » Thu, 2020-05-14 02:37
0
1,274 by sarah_b
Thu, 2020-05-14 02:37
Normal topic Pyrosetta protocol to move protein-peptide docked complex closer to active site.
by eduardoftoliveira » Fri, 2018-06-29 02:50
0
2,018 by eduardoftoliveira
Fri, 2018-06-29 03:46
Normal topic Segfault when loading scorefxn() and load_from_pdb()
by mm » Wed, 2020-07-22 03:00
0
1,044 by mm
Wed, 2020-07-22 03:02
Normal topic Distance constraints for amino acids pairs
by blubbi » Tue, 2010-05-18 05:39
0
1,851 by blubbi
Mon, 2014-04-21 06:47
Normal topic trRosetta modelling with a ligand
by ShiranBZ » Tue, 2020-08-25 01:44
0
1,433 by ShiranBZ
Tue, 2020-08-25 01:44
Normal topic Non-standard amino acids
by mark.wilson » Mon, 2010-08-02 12:13
0
1,854 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic Collect data about the modelling
by Roberto » Thu, 2022-01-06 01:43
0
731 by Roberto
Thu, 2022-01-06 01:43
Normal topic PyRosetta v1.1
by jadolfbr » Tue, 2010-02-09 08:02
0
1,620 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic building a 77 amino acid long fragment
by tevang » Fri, 2010-02-19 06:37
0
1,712 by tevang
Mon, 2014-04-21 06:47
Normal topic rosetta.core.pack.pack_rotamers_setup(pose, score_fxn, task_design, rotsets) not working
by tschiex » Sun, 2017-11-05 08:29
0
1,346 by tschiex
Sun, 2017-11-05 08:29
Normal topic Best way to store a pose by Pyrosetta for Pyrosetta
by matteoferla » Wed, 2021-04-07 06:50
0
2,125 by matteoferla
Wed, 2021-04-07 06:50
Normal topic analysis utilities for trajectories
by cbala » Mon, 2010-06-14 02:58
0
1,793 by cbala
Mon, 2014-04-21 06:47
Normal topic residue selection / secondary structure constraints
by sharang » Thu, 2010-08-05 10:16
0
1,822 by sharang
Mon, 2014-04-21 06:47
Normal topic WindowsError: [Error 32]
by jetu20 » Sun, 2020-10-11 21:02
0
1,074 by jetu20
Sun, 2020-10-11 21:02
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