You are here

Rosetta 3 - Applications

Pages

Topic / Topic starter Repliessort descending Views Last post
Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
0
9,023 by admin
Fri, 2015-09-04 16:17
Normal topic antibody.mpi.linuxgccrelease some antibodies failing to model
by drewaight » Mon, 2020-11-02 17:07
0
781 by drewaight
Mon, 2020-11-02 17:07
Normal topic Rosetta DARc suboptimal dockings
by ddhoyo » Mon, 2021-10-11 06:18
0
336 by ddhoyo
Mon, 2021-10-11 06:18
Normal topic wallpaper symmetry definition file
by aaj » Fri, 2016-02-26 08:40
0
1,155 by aaj
Fri, 2016-02-26 08:40
Normal topic pMHC modelling
by Roberto » Thu, 2022-08-04 07:11
0
159 by Roberto
Thu, 2022-08-04 07:11
Normal topic Interesting scoring performance in flexpepdock against random peptides
by ziqi1234 » Fri, 2017-12-08 07:52
0
850 by ziqi1234
Fri, 2017-12-08 07:52
Normal topic An error with score app
by Genta » Tue, 2019-10-29 18:46
0
995 by Genta
Tue, 2019-10-29 18:46
Normal topic Fragment library (vall file) from Robetta?
by alex » Sun, 2017-02-19 08:12
0
1,351 by alex
Sun, 2017-02-19 08:12
Normal topic using piper-flexpepdock
by syntekabio2019 » Thu, 2019-12-12 01:22
0
891 by syntekabio2019
Thu, 2019-12-12 01:22
Normal topic Ab Initio folding with HEM ligand molecule
by jseco » Fri, 2021-03-05 06:49
0
486 by jseco
Mon, 2021-03-08 03:40
Normal topic Dimeric interface redesign
by kjs1728 » Mon, 2022-05-02 21:57
0
212 by kjs1728
Mon, 2022-05-02 21:57
Normal topic SecundaryStructure Filter
by Soler » Sun, 2021-11-21 22:20
0
386 by Soler
Sun, 2021-11-21 22:20
Normal topic Rosetta remodel - including an RNA ligand
by daniloboskovic » Fri, 2020-04-10 04:24
0
688 by daniloboskovic
Fri, 2020-04-10 04:24
Normal topic behind threading protocol
by fred » Tue, 2011-10-25 05:37
0
1,936 by fred
Mon, 2014-04-21 06:47
Normal topic csrosetta.org login
by jfeuva » Tue, 2014-12-09 14:49
0
24,136 by jfeuva
Tue, 2014-12-09 14:49
Normal topic Zero residues error in docking
by cjy318 » Tue, 2020-07-28 19:47
0
643 by cjy318
Tue, 2020-07-28 19:47
Normal topic Params for a stapled helix peptide
by e3lm » Thu, 2022-05-26 12:55
0
223 by e3lm
Thu, 2022-05-26 12:55
Normal topic Error when using Remodel on a protein with a chemically bound ligand
by Pappmaschee » Wed, 2020-12-16 09:23
0
687 by Pappmaschee
Wed, 2020-12-16 09:23
Normal topic simple_cycpep_predict with N-term acetylation
by Ken » Fri, 2021-12-17 09:49
0
337 by Ken
Fri, 2021-12-17 09:49
Normal topic FlexPepDocking
by jlawrie » Tue, 2020-09-15 12:52
0
603 by jlawrie
Tue, 2020-09-15 12:52
Normal topic Macrocycle from a C-terminal amidated peptide
by almeida85 » Thu, 2022-08-18 07:53
0
173 by almeida85
Thu, 2022-08-18 07:53
Normal topic Secondary Matching build_sets Error
by enmirts » Wed, 2018-03-28 10:33
0
846 by enmirts
Wed, 2018-03-28 10:34
Normal topic multi ligand docking using rosetta script
by syntekabio2019 » Tue, 2021-04-13 19:31
0
491 by syntekabio2019
Tue, 2021-04-13 19:31
Normal topic Per residue total score
by johnnytam100 » Wed, 2022-07-13 21:57
0
156 by johnnytam100
Wed, 2022-07-13 21:57
Normal topic rosetta remodel and designing helix extension
by dhirajks » Thu, 2018-12-13 19:34
0
884 by dhirajks
Thu, 2018-12-13 19:34
Normal topic constraints in Rosetta ligand docking (AddorRemoveMatchCsts, Addconstraints Mover, and ConstraintSetMover)
by rohi » Mon, 2021-01-11 13:32
0
681 by rohi
Mon, 2021-01-11 13:58
Normal topic Can anybody suggests some flags to run Rifdock?
by Hyunmi Song » Sun, 2022-01-23 16:45
0
497 by Hyunmi Song
Sun, 2022-01-23 16:45
Normal topic FlexPepDock bug? Constraints do not appear in total_score?
by nrollins » Mon, 2021-07-26 14:29
0
429 by nrollins
Mon, 2021-07-26 14:29
Normal topic Ligand Rotamer Control in Macther
by Hirbond » Tue, 2022-10-25 13:01
0
957 by Hirbond
Wed, 2022-10-26 12:57
Normal topic Symmetry definition file versions
by Jeff Qu » Tue, 2021-09-28 09:53
0
370 by Jeff Qu
Tue, 2021-09-28 09:53
Normal topic FloppyTail as a rosettascripts file
by tiagogomes89 » Mon, 2015-01-19 02:45
0
1,159 by tiagogomes89
Mon, 2015-01-19 02:45
Normal topic Fewer than expected structures in clustering output
by fabiotrovato » Thu, 2020-08-20 00:59
0
516 by fabiotrovato
Thu, 2020-08-20 00:59
Normal topic Benchmarking Rosetta DDG Methods
by sareeves96 » Fri, 2022-07-29 09:55
0
168 by sareeves96
Fri, 2022-07-29 09:55
Normal topic Ligand docking with constraint
by Alison_Yajie » Wed, 2020-06-24 12:34
0
578 by Alison_Yajie
Wed, 2020-06-24 12:34
Normal topic Question with rosetta AbPredict tutorial
by terabithia2011 » Mon, 2021-01-25 09:24
0
494 by terabithia2011
Mon, 2021-01-25 09:24
Normal topic Rosetta Matcher not recognizing protonation forms of CST files like CYZ, HIS_D, etc
by Hirbond » Tue, 2022-03-01 13:16
0
315 by Hirbond
Tue, 2022-03-01 13:16
Normal topic The problems on pdb renumbering
by Sunyp_IM » Sun, 2017-08-20 06:39
0
1,800 by Sunyp_IM
Sun, 2017-08-20 06:39
Normal topic application for affinity optimization
by wentlewi » Fri, 2020-03-13 03:24
0
692 by wentlewi
Fri, 2020-03-13 03:24
Normal topic FastRelax Refinement severe clashes
by Victor Tobiasson » Thu, 2021-05-20 06:55
0
469 by Victor Tobiasson
Thu, 2021-05-20 06:55
Normal topic Does antibody_numbering_converter support camelid antibody?
by mxp » Tue, 2020-07-07 01:21
0
579 by mxp
Tue, 2020-07-07 01:21
Normal topic problem in using "zinc_site_redesign" tool
by Isomerase » Mon, 2022-03-28 01:19
0
237 by Isomerase
Mon, 2022-03-28 01:19
Normal topic cluster,how to get the statistic data
by MajorID » Wed, 2011-06-08 09:20
0
1,701 by MajorID
Mon, 2014-04-21 06:47
Normal topic How many iterations of remodel is enough?
by daniloboskovic » Thu, 2020-07-16 08:07
0
557 by daniloboskovic
Thu, 2020-07-16 08:14
Normal topic extract docking pose from ligand docking silent file
by Ruska322 » Sat, 2019-09-07 05:21
0
756 by Ruska322
Sat, 2019-09-07 05:21
Normal topic How to apply cartesian_ddg to multi-metric enzyme?
by Wang Zhe » Wed, 2021-12-08 10:07
0
332 by Wang Zhe
Wed, 2021-12-08 10:07
Normal topic Urgent issue: Error with submitting a new Rosetta-Vienna RNP-ddG job
by eyaaaan » Sun, 2022-08-07 22:03
0
164 by eyaaaan
Tue, 2022-08-09 21:59
Normal topic PDB Clustering
by code_Monkey » Mon, 2021-04-05 10:40
0
482 by code_Monkey
Mon, 2021-04-05 10:40
Normal topic backrub application, resfile, and pivot_residues
by tylerborrman » Tue, 2016-12-06 14:46
0
973 by tylerborrman
Tue, 2016-12-06 14:46
Normal topic Dock two domains using topology broker
by sn » Thu, 2017-10-05 17:07
0
865 by sn
Thu, 2017-10-05 17:07
Normal topic "Residue 7 was disulfide bonded but had no partner" with antibody.linuxgccrelease
by Sunyp_IM » Thu, 2020-06-04 05:53
0
587 by Sunyp_IM
Thu, 2020-06-04 05:54
Normal topic Protein design: Ligand binding between two units of a homodimer
by chemotaxis_123 » Sun, 2022-01-02 16:01
0
339 by chemotaxis_123
Sun, 2022-01-02 16:01
Normal topic FlexPepDock Multi chain receptor
by evo_umich » Mon, 2018-04-02 12:13
0
950 by evo_umich
Mon, 2018-04-02 12:13
Normal topic Error with RNA_denovo
by zmfowler » Thu, 2022-07-14 05:34
0
172 by zmfowler
Thu, 2022-07-14 05:34
Normal topic RNP structure prediction flags
by daniloboskovic » Fri, 2019-08-16 11:10
0
717 by daniloboskovic
Fri, 2019-08-16 11:17
Normal topic Robetta ab initio - TrRosetta for membrane proteins
by benhardy » Wed, 2020-09-30 08:42
0
984 by benhardy
Wed, 2020-09-30 08:42
Normal topic Topobuilder segmentation fault
by tatsiana.bylund » Mon, 2021-08-09 07:10
0
666 by tatsiana.bylund
Mon, 2021-08-09 07:10
Normal topic Help to understand docking results
by rtorquato » Fri, 2022-11-25 12:05
0
100 by rtorquato
Fri, 2022-11-25 12:05
Normal topic Pepspec options
by shaunmk » Mon, 2015-04-27 02:33
0
1,400 by shaunmk
Mon, 2015-04-27 02:33
Normal topic Linker Building in scFv
by sam_dc » Sat, 2021-10-09 05:38
0
391 by sam_dc
Sat, 2021-10-09 05:38
Normal topic RosettaAntibody3 - How can I model an extended H3?
by brspurri » Fri, 2020-08-28 09:11
0
583 by brspurri
Fri, 2020-08-28 09:11
Normal topic Scoring after HBNet
by HHL_SIUC » Wed, 2020-07-01 10:49
0
562 by HHL_SIUC
Wed, 2020-07-01 10:49
Normal topic pmut_scan_parallel
by G Mustafa » Wed, 2018-10-17 05:41
0
1,072 by G Mustafa
Wed, 2018-10-17 05:41
Normal topic ligand_docking: ligand preparation
by Alison_Yajie » Thu, 2020-05-21 09:42
0
641 by Alison_Yajie
Thu, 2020-05-21 09:42
Normal topic constraining different chains together in rosetta_cm
by y_atsmonraz » Thu, 2021-11-18 02:59
0
403 by y_atsmonraz
Thu, 2021-11-18 03:01
Normal topic Finding lowest energy structure among generated structures
by Marius1987 » Sun, 2016-04-10 11:38
0
1,305 by Marius1987
Sun, 2016-04-10 12:09
Normal topic What means "[ ERROR ] TIME_STAMP: AbrelaxMover: finished ...NO_BATCH S_0001."
by Corvin » Thu, 2020-04-02 00:16
0
718 by Corvin
Thu, 2020-04-02 00:16
Normal topic help surface_docking peptide on ice
by engand93 » Wed, 2019-03-27 02:43
0
709 by engand93
Wed, 2019-03-27 02:43
Normal topic RosettaAntibody3 core.pose.util error
by linhhoang157 » Tue, 2020-07-28 12:40
0
710 by linhhoang157
Tue, 2020-07-28 12:40
Normal topic IL-2 gets better binding with beta / gamma
by tonycheng1688 » Wed, 2022-05-25 10:23
0
242 by tonycheng1688
Wed, 2022-05-25 10:23
Normal topic Problems with mpi version of antibody.linuxgccrelease
by Sunyp_IM » Thu, 2020-05-28 23:06
0
721 by Sunyp_IM
Thu, 2020-05-28 23:07
Normal topic Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)?
by Corvin » Wed, 2020-12-16 04:58
0
625 by Corvin
Wed, 2020-12-30 09:21
Normal topic Segfault error while running MR Rosetta in Phenix
by memilton » Thu, 2021-12-16 09:09
0
391 by memilton
Thu, 2021-12-16 09:09
Normal topic fragment_picker bug
by David Hoover » Wed, 2012-02-29 11:43
0
1,548 by David Hoover
Mon, 2014-04-21 06:47
Normal topic Docking HeparinSulfate to proteins using GlycanDock
by GebauerJ » Tue, 2022-08-16 07:44
0
149 by GebauerJ
Tue, 2022-08-16 07:44
Normal topic Helical Symmetry Axis
by Sandy » Tue, 2016-05-31 18:48
0
1,453 by Sandy
Tue, 2016-05-31 18:48
Normal topic Design of multimeric protein
by ldlamini » Mon, 2021-01-11 07:23
0
506 by ldlamini
Mon, 2021-01-11 07:23
Normal topic ligand dock into HEM containg pdb
by syntekabio2019 » Thu, 2022-01-20 03:05
0
390 by syntekabio2019
Thu, 2022-01-20 03:05
Normal topic new BUNS for FunFolDes run
by tatsiana.bylund » Wed, 2019-08-14 20:57
0
719 by tatsiana.bylund
Wed, 2019-08-14 20:57
Normal topic FlexPepDock ab initio: behavior without fragment files
by nrollins » Mon, 2021-07-26 14:16
0
374 by nrollins
Mon, 2021-07-26 14:16
Normal topic Setting pivots points for GenKIC
by almeida85 » Tue, 2022-10-25 02:32
0
919 by almeida85
Tue, 2022-10-25 02:32
Normal topic Using GlycanDock and the Antibody Affinity Maturation protocol.
by tbelec » Mon, 2022-02-28 12:37
0
362 by tbelec
Mon, 2022-02-28 12:37
Normal topic Side-chain grafting at the fixed protein and position
by Kazu » Wed, 2020-05-20 08:49
0
535 by Kazu
Wed, 2020-05-20 08:49
Normal topic core.pose.util: [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard
by AlfredoKCL » Sat, 2020-11-07 18:21
0
801 by AlfredoKCL
Sat, 2020-11-07 18:21
Normal topic Docking protein complexes when constrained by oligomer symmetry
by msk » Tue, 2014-06-03 11:09
0
1,256 by msk
Tue, 2014-06-03 11:09
Normal topic Extracting top score PIPER models
by almeida85 » Mon, 2020-08-31 07:17
0
681 by almeida85
Mon, 2020-08-31 07:17
Normal topic How to design the anitgen-antibody interface
by Sunyp_IM » Tue, 2017-12-12 18:44
0
972 by Sunyp_IM
Tue, 2017-12-12 18:44
Normal topic Symmetry mode in Remodel for N-terminal extension
by yvonne.chan2 » Mon, 2019-11-04 13:41
0
892 by yvonne.chan2
Mon, 2019-11-04 13:41
Normal topic zero standard deviation of I_sc in protein-protein docking
by rohi » Fri, 2020-07-03 22:19
0
526 by rohi
Fri, 2020-07-03 22:20
Normal topic Segfault with Pepspec
by almeida85 » Thu, 2021-02-11 02:56
0
434 by almeida85
Thu, 2021-02-11 02:56
Normal topic snugdock run error: Sequence for partner1 does not match first member of ensemble1
by pagumaaaaa » Fri, 2022-03-25 01:21
0
265 by pagumaaaaa
Fri, 2022-03-25 01:21
Normal topic Error Implementing Match Style Constraints
by pwging13 » Thu, 2019-12-19 09:53
0
713 by pwging13
Thu, 2019-12-19 09:53
Normal topic Can't find RosettaRemodel in Rosetta 3.4
by petrikigor » Mon, 2012-12-03 13:56
0
1,542 by petrikigor
Mon, 2014-04-21 06:47
Normal topic cartesian_ddg crashes when the mutfile contains multiple mutations to non-canonical residues
by ValentinaSora » Sun, 2020-05-24 12:32
0
814 by ValentinaSora
Sun, 2020-05-24 12:32
Normal topic Symmetric assembly and output reconstruction
by felipet » Wed, 2014-07-02 10:23
0
1,171 by felipet
Wed, 2014-07-02 10:23
Normal topic algebric library for rosetta
by yigallah » Mon, 2014-12-15 08:46
0
1,137 by yigallah
Mon, 2014-12-15 08:46
Normal topic appropriate sampling for protein docking to a multi chain assembly
by SWM » Fri, 2020-01-24 11:22
0
572 by SWM
Fri, 2020-01-24 11:22
Normal topic Bug Report - Encoding issue
by daniloboskovic » Tue, 2020-08-04 07:02
0
486 by daniloboskovic
Tue, 2020-08-04 07:02
Normal topic Weighted scores??
by sizhang » Wed, 2018-12-05 15:22
0
735 by sizhang
Wed, 2018-12-05 15:22
Normal topic flexpepdcok of lipid conjugated peptide with glyco protein.
by ravi.thakkkar369 » Fri, 2020-12-18 13:00
0
476 by ravi.thakkkar369
Fri, 2020-12-18 13:00
Normal topic membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template?
by fglaser » Thu, 2011-04-07 07:57
0
1,975 by fglaser
Mon, 2014-04-21 06:47

Pages

New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - Applications