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Rosetta 3 - Applications

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
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17,013 by admin
Fri, 2015-09-04 16:17
Normal topic new BUNS for FunFolDes run
by tatsiana.bylund » Wed, 2019-08-14 20:57
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908 by tatsiana.bylund
Wed, 2019-08-14 20:57
Normal topic FlexPepDock ab initio: behavior without fragment files
by nrollins » Mon, 2021-07-26 14:16
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598 by nrollins
Mon, 2021-07-26 14:16
Normal topic Setting pivots points for GenKIC
by almeida85 » Tue, 2022-10-25 02:32
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1,548 by almeida85
Tue, 2022-10-25 02:32
Normal topic Molecular Replacement with multiple chains
by brspurri » Fri, 2011-06-10 08:25
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2,108 by brspurri
Mon, 2014-04-21 06:47
Normal topic Design of multimeric protein
by ldlamini » Mon, 2021-01-11 07:23
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792 by ldlamini
Mon, 2021-01-11 07:23
Normal topic ligand dock into HEM containg pdb
by syntekabio2019 » Thu, 2022-01-20 03:05
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913 by syntekabio2019
Thu, 2022-01-20 03:05
Normal topic non-zero ddG of binding even without mutations
by top-gun98 » Wed, 2023-06-07 17:19
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240 by top-gun98
Wed, 2023-06-07 17:19
Normal topic Using GlycanDock and the Antibody Affinity Maturation protocol.
by tbelec » Mon, 2022-02-28 12:37
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1,014 by tbelec
Mon, 2022-02-28 12:37
Normal topic DNA Interface design
by zadie1118 » Wed, 2011-06-22 07:05
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2,112 by zadie1118
Mon, 2014-04-21 06:47
Normal topic How to design the anitgen-antibody interface
by Sunyp_IM » Tue, 2017-12-12 18:44
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1,145 by Sunyp_IM
Tue, 2017-12-12 18:44
Normal topic Symmetry mode in Remodel for N-terminal extension
by yvonne.chan2 » Mon, 2019-11-04 13:41
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1,156 by yvonne.chan2
Mon, 2019-11-04 13:41
Normal topic zero standard deviation of I_sc in protein-protein docking
by rohi » Fri, 2020-07-03 22:19
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747 by rohi
Fri, 2020-07-03 22:20
Normal topic Segfault with Pepspec
by almeida85 » Thu, 2021-02-11 02:56
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608 by almeida85
Thu, 2021-02-11 02:56
Normal topic snugdock run error: Sequence for partner1 does not match first member of ensemble1
by pagumaaaaa » Fri, 2022-03-25 01:21
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788 by pagumaaaaa
Fri, 2022-03-25 01:21
Normal topic Side-chain grafting at the fixed protein and position
by Kazu » Wed, 2020-05-20 08:49
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731 by Kazu
Wed, 2020-05-20 08:49
Normal topic core.pose.util: [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard
by AlfredoKCL » Sat, 2020-11-07 18:21
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1,182 by AlfredoKCL
Sat, 2020-11-07 18:21
Normal topic prepack - residue count fails
by xfradera » Fri, 2023-01-27 06:36
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992 by xfradera
Fri, 2023-01-27 06:36
Normal topic Docking protein complexes when constrained by oligomer symmetry
by msk » Tue, 2014-06-03 11:09
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1,437 by msk
Tue, 2014-06-03 11:09
Normal topic Extracting top score PIPER models
by almeida85 » Mon, 2020-08-31 07:17
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949 by almeida85
Mon, 2020-08-31 07:17
Normal topic Symmetric assembly and output reconstruction
by felipet » Wed, 2014-07-02 10:23
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1,402 by felipet
Wed, 2014-07-02 10:23
Normal topic Error Implementing Match Style Constraints
by pwging13 » Thu, 2019-12-19 09:53
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929 by pwging13
Thu, 2019-12-19 09:53
Normal topic Can't find RosettaRemodel in Rosetta 3.4
by petrikigor » Mon, 2012-12-03 13:56
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1,723 by petrikigor
Mon, 2014-04-21 06:47
Normal topic cartesian_ddg crashes when the mutfile contains multiple mutations to non-canonical residues
by ValentinaSora » Sun, 2020-05-24 12:32
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1,257 by ValentinaSora
Sun, 2020-05-24 12:32
Normal topic core.pose.util: (0) {0} [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard
by ldx022 » Thu, 2023-03-16 04:13
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997 by ldx022
Thu, 2023-03-16 04:13
Normal topic DNA-protein docking
by ksteczk » Sat, 2020-04-11 11:23
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1,267 by ksteczk
Sat, 2020-04-11 11:23
Normal topic Pepspec Anchor Dock
by Soler » Wed, 2020-09-16 19:08
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749 by Soler
Wed, 2020-09-16 19:08
Normal topic Repacker vs minimization
by Elijah_Hix » Fri, 2021-07-02 07:25
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583 by Elijah_Hix
Fri, 2021-07-02 07:25
Normal topic Prepacking a macrocycle for docking / preserving cyclization
by almeida85 » Thu, 2022-09-08 06:54
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675 by almeida85
Thu, 2022-09-08 06:54
Normal topic algebric library for rosetta
by yigallah » Mon, 2014-12-15 08:46
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1,328 by yigallah
Mon, 2014-12-15 08:46
Normal topic appropriate sampling for protein docking to a multi chain assembly
by SWM » Fri, 2020-01-24 11:22
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760 by SWM
Fri, 2020-01-24 11:22
Normal topic Bug Report - Encoding issue
by daniloboskovic » Tue, 2020-08-04 07:02
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674 by daniloboskovic
Tue, 2020-08-04 07:02
Normal topic Weighted scores??
by sizhang » Wed, 2018-12-05 15:22
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921 by sizhang
Wed, 2018-12-05 15:22
Normal topic flexpepdcok of lipid conjugated peptide with glyco protein.
by ravi.thakkkar369 » Fri, 2020-12-18 13:00
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675 by ravi.thakkkar369
Fri, 2020-12-18 13:00
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
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1,342 by a-eatemadi@razi...
Mon, 2017-12-04 23:52
Normal topic Residue selector
by Alison_Yajie » Wed, 2020-06-17 19:57
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777 by Alison_Yajie
Thu, 2020-06-18 09:47
Normal topic FastRelaxMover parameters for antibody-antigen interaction analysis
by samuel_k » Thu, 2022-01-27 01:08
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896 by samuel_k
Thu, 2022-01-27 01:08
Normal topic Generating a new Vall database
by vijay.anand » Tue, 2023-06-20 12:08
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217 by vijay.anand
Tue, 2023-06-20 12:08
Normal topic behind threading protocol
by fred » Tue, 2011-10-25 05:37
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2,156 by fred
Mon, 2014-04-21 06:47
Normal topic NCAA Rotamers for Cyclosporin
by marinok » Mon, 2020-09-28 14:11
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1,077 by marinok
Mon, 2020-09-28 14:11
Normal topic ddg_monomer: if MPI executable is reproducible and efficient?
by lanselibai » Sun, 2015-01-11 09:48
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1,594 by lanselibai
Sun, 2015-01-11 10:50
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Mon, 2016-01-04 11:26
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1,457 by achambe
Mon, 2016-01-04 11:26
Normal topic RosettaCM
by jlawrie » Fri, 2020-08-14 14:09
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1,405 by jlawrie
Fri, 2020-08-14 14:09
Normal topic Error with RoseTTAFold
by sc19 » Thu, 2022-07-14 03:40
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823 by sc19
Thu, 2022-07-14 03:40
Normal topic Modelling humanized camelid like antibody
by terabithia2011 » Tue, 2021-01-26 10:12
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766 by terabithia2011
Tue, 2021-01-26 10:12
Normal topic simple_cycpep_predict thioether_lariat option
by Ken » Mon, 2022-03-14 15:14
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707 by Ken
Mon, 2022-03-14 15:14
Normal topic RosettaMatch and CST files
by mwfranklin » Mon, 2016-07-25 11:49
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2,117 by mwfranklin
Mon, 2016-07-25 11:49
Normal topic how to run ala_scan.xml
by xinmiaohe » Mon, 2019-08-26 09:38
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992 by xinmiaohe
Mon, 2019-08-26 09:38
Normal topic minirosetta: how to reserve (inter-chain) disulfides after relax ?
by lanselibai » Sat, 2015-01-24 10:56
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2,190 by lanselibai
Thu, 2015-01-29 00:50
Normal topic Comparative Modeling Templates for Protein with Multiple Domains
by Morrian_Lynn » Wed, 2020-03-04 10:42
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809 by Morrian_Lynn
Wed, 2020-03-04 10:42
Normal topic hpatch commands and how to identify patches
by Bianca Oliva » Thu, 2021-04-29 04:02
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831 by Bianca Oliva
Thu, 2021-04-29 04:02
Normal topic CS-Rosetta cofactor
by martongadanecz » Wed, 2022-08-03 01:05
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669 by martongadanecz
Wed, 2022-08-03 01:05
Normal topic Docking of multichain oligomers
by sdh_h » Wed, 2020-03-25 12:43
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996 by sdh_h
Wed, 2020-03-25 12:43
Normal topic Docking the border segments of coiled coils in parallel orientation
by Corvin » Mon, 2019-12-02 02:00
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908 by Corvin
Mon, 2019-12-02 02:00
Normal topic about “protein mimic designer”
by sia » Wed, 2022-04-27 19:59
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836 by sia
Wed, 2022-04-27 19:59
Normal topic Fixing and Building disulfide bonds in homology modeling
by kamau » Wed, 2014-09-24 11:33
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2,402 by kamau
Wed, 2014-09-24 11:35
Normal topic Problems with waters in CoupledMoves application
by Corvin » Tue, 2021-11-16 07:16
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802 by Corvin
Tue, 2021-11-16 07:22
Normal topic How to change the axes of "-spin" in docking_protocol
by Zehui Zhou » Mon, 2023-02-13 22:06
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1,887 by Zehui Zhou
Mon, 2023-02-13 22:06
Normal topic Nanobody design
by chandana » Tue, 2022-08-09 20:36
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987 by chandana
Tue, 2022-08-09 20:36
Normal topic crazy loopmodel: linear output pdbs
by fred » Wed, 2014-12-03 12:27
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1,324 by fred
Wed, 2014-12-03 12:28
Normal topic Enzyme Design Not Editing Structure
by liuwenxi » Wed, 2022-05-18 10:12
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766 by liuwenxi
Wed, 2022-05-18 10:12
Normal topic error in loop remodeling
by syntekabio2019 » Wed, 2023-04-05 01:00
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274 by syntekabio2019
Wed, 2023-04-05 01:01
Normal topic cluster,how to get the statistic data
by MajorID » Wed, 2011-06-08 09:20
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1,905 by MajorID
Mon, 2014-04-21 06:47
Normal topic Pepspec - sequence sampling
by almeida85 » Thu, 2022-06-23 04:05
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670 by almeida85
Thu, 2022-06-23 05:50
Normal topic charge grid in rosetta ligand docking using rosetta script
by syntekabio2019 » Mon, 2022-01-17 23:53
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882 by syntekabio2019
Mon, 2022-01-17 23:53
Normal topic Repeatability of DDG calculation
by jennifer » Wed, 2015-04-08 05:29
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1,553 by jennifer
Wed, 2015-04-08 05:29
Normal topic structure prediction
by MA » Wed, 2018-09-05 00:50
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908 by MA
Wed, 2018-09-05 00:50
Normal topic Error reading in/out glycosylated silent file - "Can't create a polymer bond after residue due to incompatible type"
by amorin » Mon, 2021-09-27 12:16
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821 by amorin
Mon, 2021-09-27 12:16
Normal topic remodel: what are the exact meanings of notations for secondary structure?
by lanselibai » Sat, 2015-01-17 04:53
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1,454 by lanselibai
Sat, 2015-01-17 07:57
Normal topic DDG and interaction score problem
by a-eatemadi@razi... » Mon, 2018-04-09 22:54
0
1,148 by a-eatemadi@razi...
Mon, 2018-04-09 22:54
Normal topic how to generate the whole molecule that contains all the symmetric chains
by Sunyp_IM » Sun, 2017-12-10 19:43
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1,145 by Sunyp_IM
Sun, 2017-12-10 19:43
Normal topic ligand_docking: ligand preparation
by Alison_Yajie » Thu, 2020-07-02 07:05
0
834 by Alison_Yajie
Thu, 2020-07-02 07:10
Normal topic core.optimization.LineMinimizer: [ ERROR ] Inaccurate G!
by aralz » Thu, 2021-02-11 00:46
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864 by aralz
Thu, 2021-02-11 00:46
Normal topic protein relax
by Alison_Yajie » Tue, 2020-05-19 08:29
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814 by Alison_Yajie
Tue, 2020-05-19 08:29
Normal topic Grafting using antibody.mpi.linuxgccrelease and specifying custom template which doesnt have pdb id.
by SubhaK » Wed, 2023-01-18 23:33
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819 by SubhaK
Wed, 2023-01-18 23:33
Normal topic score is 0 in the output? - RosettaScripts
by chrisHKL » Thu, 2020-03-05 09:33
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892 by chrisHKL
Thu, 2020-03-05 12:58
Normal topic Issues with modifying dock.xml for multiple ligand docking
by DGR95 » Fri, 2021-05-14 12:51
0
688 by DGR95
Fri, 2021-05-14 12:51
Normal topic Include MHC alpha helices in loop modelling protocol for pMHC complex
by Roberto » Thu, 2022-08-04 07:22
0
698 by Roberto
Thu, 2022-08-04 07:22
Normal topic Use membrane or non-membrane weights in RosettaCM for a hexon in virus capsid?
by lanselibai » Sat, 2020-04-11 02:10
0
896 by lanselibai
Sat, 2020-04-11 02:10
Normal topic using DARC in rosetta
by syntekabio2019 » Thu, 2019-12-12 01:27
0
899 by syntekabio2019
Thu, 2019-12-12 01:27
Normal topic Flex_ddG突变设计
by wangtao » Thu, 2022-05-05 02:46
0
819 by wangtao
Thu, 2022-05-05 02:46
Normal topic 'Use_filters true' option - failure of AbInitio Relax application
by Corvin » Wed, 2023-11-08 06:34
0
56 by Corvin
Wed, 2023-11-08 06:34
Normal topic Lots of Prepacking Jobs for Snugdock Failing
by katherinemccoy » Tue, 2023-02-28 18:17
0
2,178 by katherinemccoy
Mon, 2023-03-13 19:10
Normal topic Trehalose
by jpfuenzalidawx » Thu, 2022-09-08 00:49
0
631 by jpfuenzalidawx
Thu, 2022-09-08 00:49
Normal topic Limit on backbone movement in relax?
by SWM » Fri, 2020-01-24 07:35
0
852 by SWM
Fri, 2020-01-24 07:35
Normal topic What is an SS0 predictor?
by ojmel » Fri, 2021-04-02 14:25
0
649 by ojmel
Mon, 2021-04-12 07:50
Normal topic Local docking- should I use KIC?
by seayoung lee » Fri, 2022-05-27 02:45
0
779 by seayoung lee
Fri, 2022-05-27 02:45
Normal topic AbinitioRelax detect_disulf_tolerance
by aarono » Tue, 2020-06-02 00:13
0
851 by aarono
Tue, 2020-06-02 00:13
Normal topic metalloprotein ab initio with glutamic acid
by inorgchem » Tue, 2020-06-16 20:45
0
646 by inorgchem
Tue, 2020-06-16 20:45
Normal topic Writing down properties for new atom types
by Corvin » Tue, 2021-01-12 04:30
0
639 by Corvin
Wed, 2021-01-13 04:00
Normal topic Relax in membrane pull my protein out of the membrane
by Martin Floor » Wed, 2022-01-26 07:46
0
920 by Martin Floor
Wed, 2022-01-26 07:46
Normal topic Silent File Scores Missing: RNA Protein Complex Predition
by axio23 » Fri, 2023-06-16 05:45
0
230 by axio23
Fri, 2023-06-16 05:45
Normal topic clashes created with enzdes
by listofdina » Mon, 2021-08-02 06:51
0
684 by listofdina
Mon, 2021-08-02 06:51
Normal topic snugdock: constrained backbone
by mahendra » Mon, 2022-11-14 02:51
0
1,628 by mahendra
Mon, 2022-11-14 02:51
Normal topic Ligand Docking with ROSETTA
by sc19 » Thu, 2022-07-14 01:32
0
754 by sc19
Thu, 2022-07-14 01:34
Normal topic Using abinition to predict a new (previously unsolved) structure.
by ac.research » Mon, 2017-01-09 00:59
0
1,257 by ac.research
Mon, 2017-01-09 00:59
Normal topic fragment_picker bug
by David Hoover » Wed, 2012-02-29 11:43
0
1,718 by David Hoover
Mon, 2014-04-21 06:47
Normal topic Creating fragment files for proteins less than 27 aa in length
by Poladu » Tue, 2021-01-26 07:50
0
762 by Poladu
Tue, 2021-01-26 07:50
Normal topic Antibody Structure Prediction - Error on antibody_H3 step: "Option matching -antibody:remodel not found in command line"
by ramon-arg » Mon, 2023-07-24 17:56
0
164 by ramon-arg
Mon, 2023-07-24 17:56
Normal topic Flex_ddG crashes when attempting to move 2 chains (e.g. chains_to_move = A,C)
by jcampecino » Wed, 2020-05-13 12:22
0
975 by jcampecino
Wed, 2020-05-13 12:22

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