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Rosetta 3 - Applications

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
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7,999 by admin
Fri, 2015-09-04 16:17
Normal topic Folding and Docking using Symmetry
by danielles » Wed, 2012-09-12 11:32
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1,542 by danielles
Mon, 2014-04-21 06:47
Normal topic csrosetta.org login
by jfeuva » Tue, 2014-12-09 14:49
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24,036 by jfeuva
Tue, 2014-12-09 14:49
Normal topic Zero residues error in docking
by cjy318 » Tue, 2020-07-28 19:47
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522 by cjy318
Tue, 2020-07-28 19:47
Normal topic Error when using Remodel on a protein with a chemically bound ligand
by Pappmaschee » Wed, 2020-12-16 09:23
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503 by Pappmaschee
Wed, 2020-12-16 09:23
Normal topic simple_cycpep_predict with N-term acetylation
by Ken » Fri, 2021-12-17 09:49
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162 by Ken
Fri, 2021-12-17 09:49
Normal topic FlexPepDocking
by jlawrie » Tue, 2020-09-15 12:52
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488 by jlawrie
Tue, 2020-09-15 12:52
Normal topic FlexPepDock bug? Constraints do not appear in total_score?
by nrollins » Mon, 2021-07-26 14:29
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289 by nrollins
Mon, 2021-07-26 14:29
Normal topic Secondary Matching build_sets Error
by enmirts » Wed, 2018-03-28 10:33
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749 by enmirts
Wed, 2018-03-28 10:34
Normal topic multi ligand docking using rosetta script
by syntekabio2019 » Tue, 2021-04-13 19:31
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361 by syntekabio2019
Tue, 2021-04-13 19:31
Normal topic rosetta remodel and designing helix extension
by dhirajks » Thu, 2018-12-13 19:34
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764 by dhirajks
Thu, 2018-12-13 19:34
Normal topic constraints in Rosetta ligand docking (AddorRemoveMatchCsts, Addconstraints Mover, and ConstraintSetMover)
by rohi » Mon, 2021-01-11 13:32
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537 by rohi
Mon, 2021-01-11 13:58
Normal topic Can anybody suggests some flags to run Rifdock?
by Hyunmi Song » Sun, 2022-01-23 16:45
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244 by Hyunmi Song
Sun, 2022-01-23 16:45
Normal topic Symmetry definition file versions
by Jeff Qu » Tue, 2021-09-28 09:53
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221 by Jeff Qu
Tue, 2021-09-28 09:53
Normal topic FloppyTail as a rosettascripts file
by tiagogomes89 » Mon, 2015-01-19 02:45
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1,070 by tiagogomes89
Mon, 2015-01-19 02:45
Normal topic Fewer than expected structures in clustering output
by fabiotrovato » Thu, 2020-08-20 00:59
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427 by fabiotrovato
Thu, 2020-08-20 00:59
Normal topic Ligand docking with constraint
by Alison_Yajie » Wed, 2020-06-24 12:34
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479 by Alison_Yajie
Wed, 2020-06-24 12:34
Normal topic Question with rosetta AbPredict tutorial
by terabithia2011 » Mon, 2021-01-25 09:24
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372 by terabithia2011
Mon, 2021-01-25 09:24
Normal topic Rosetta Matcher not recognizing protonation forms of CST files like CYZ, HIS_D, etc
by Hirbond » Tue, 2022-03-01 13:16
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142 by Hirbond
Tue, 2022-03-01 13:16
Normal topic Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0.
by daniloboskovic » Fri, 2019-11-08 08:24
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1,483 by daniloboskovic
Fri, 2019-11-08 08:27
Normal topic Does antibody_numbering_converter support camelid antibody?
by mxp » Tue, 2020-07-07 01:21
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472 by mxp
Tue, 2020-07-07 01:21
Normal topic problem in using "zinc_site_redesign" tool
by Isomerase » Mon, 2022-03-28 01:19
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68 by Isomerase
Mon, 2022-03-28 01:19
Normal topic The problems on pdb renumbering
by Sunyp_IM » Sun, 2017-08-20 06:39
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1,661 by Sunyp_IM
Sun, 2017-08-20 06:39
Normal topic application for affinity optimization
by wentlewi » Fri, 2020-03-13 03:24
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583 by wentlewi
Fri, 2020-03-13 03:24
Normal topic FastRelax Refinement severe clashes
by Victor Tobiasson » Thu, 2021-05-20 06:55
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344 by Victor Tobiasson
Thu, 2021-05-20 06:55
Normal topic How many iterations of remodel is enough?
by daniloboskovic » Thu, 2020-07-16 08:07
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449 by daniloboskovic
Thu, 2020-07-16 08:14
Normal topic extract docking pose from ligand docking silent file
by Ruska322 » Sat, 2019-09-07 05:21
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657 by Ruska322
Sat, 2019-09-07 05:21
Normal topic How to apply cartesian_ddg to multi-metric enzyme?
by Wang Zhe » Wed, 2021-12-08 10:07
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175 by Wang Zhe
Wed, 2021-12-08 10:07
Normal topic Can't find RosettaRemodel in Rosetta 3.4
by petrikigor » Mon, 2012-12-03 13:56
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1,460 by petrikigor
Mon, 2014-04-21 06:47
Normal topic PDB Clustering
by code_Monkey » Mon, 2021-04-05 10:40
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355 by code_Monkey
Mon, 2021-04-05 10:40
Normal topic backrub application, resfile, and pivot_residues
by tylerborrman » Tue, 2016-12-06 14:46
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879 by tylerborrman
Tue, 2016-12-06 14:46
Normal topic Dock two domains using topology broker
by sn » Thu, 2017-10-05 17:07
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769 by sn
Thu, 2017-10-05 17:07
Normal topic "Residue 7 was disulfide bonded but had no partner" with antibody.linuxgccrelease
by Sunyp_IM » Thu, 2020-06-04 05:53
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469 by Sunyp_IM
Thu, 2020-06-04 05:54
Normal topic Protein design: Ligand binding between two units of a homodimer
by chemotaxis_123 » Sun, 2022-01-02 16:01
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167 by chemotaxis_123
Sun, 2022-01-02 16:01
Normal topic RNP structure prediction flags
by daniloboskovic » Fri, 2019-08-16 11:10
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632 by daniloboskovic
Fri, 2019-08-16 11:17
Normal topic Robetta ab initio - TrRosetta for membrane proteins
by benhardy » Wed, 2020-09-30 08:42
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860 by benhardy
Wed, 2020-09-30 08:42
Normal topic Molecular Replacement with multiple chains
by brspurri » Fri, 2011-06-10 08:25
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1,833 by brspurri
Mon, 2014-04-21 06:47
Normal topic Topobuilder segmentation fault
by tatsiana.bylund » Mon, 2021-08-09 07:10
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462 by tatsiana.bylund
Mon, 2021-08-09 07:10
Normal topic FlexPepDock Multi chain receptor
by evo_umich » Mon, 2018-04-02 12:13
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844 by evo_umich
Mon, 2018-04-02 12:13
Normal topic Pepspec options
by shaunmk » Mon, 2015-04-27 02:33
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1,311 by shaunmk
Mon, 2015-04-27 02:33
Normal topic DNA Interface design
by zadie1118 » Wed, 2011-06-22 07:05
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1,823 by zadie1118
Mon, 2014-04-21 06:47
Normal topic Linker Building in scFv
by sam_dc » Sat, 2021-10-09 05:38
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226 by sam_dc
Sat, 2021-10-09 05:38
Normal topic RosettaAntibody3 - How can I model an extended H3?
by brspurri » Fri, 2020-08-28 09:11
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476 by brspurri
Fri, 2020-08-28 09:11
Normal topic Scoring after HBNet
by HHL_SIUC » Wed, 2020-07-01 10:49
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456 by HHL_SIUC
Wed, 2020-07-01 10:49
Normal topic help surface_docking peptide on ice
by engand93 » Wed, 2019-03-27 02:43
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623 by engand93
Wed, 2019-03-27 02:43
Normal topic pmut_scan_parallel
by G Mustafa » Wed, 2018-10-17 05:41
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932 by G Mustafa
Wed, 2018-10-17 05:41
Normal topic ligand_docking: ligand preparation
by Alison_Yajie » Thu, 2020-05-21 09:42
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503 by Alison_Yajie
Thu, 2020-05-21 09:42
Normal topic constraining different chains together in rosetta_cm
by y_atsmonraz » Thu, 2021-11-18 02:59
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250 by y_atsmonraz
Thu, 2021-11-18 03:01
Normal topic Finding lowest energy structure among generated structures
by Marius1987 » Sun, 2016-04-10 11:38
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1,202 by Marius1987
Sun, 2016-04-10 12:09
Normal topic What means "[ ERROR ] TIME_STAMP: AbrelaxMover: finished ...NO_BATCH S_0001."
by Corvin » Thu, 2020-04-02 00:16
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613 by Corvin
Thu, 2020-04-02 00:16
Normal topic RosettaAntibody3 core.pose.util error
by linhhoang157 » Tue, 2020-07-28 12:40
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580 by linhhoang157
Tue, 2020-07-28 12:40
Normal topic Problems with mpi version of antibody.linuxgccrelease
by Sunyp_IM » Thu, 2020-05-28 23:06
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600 by Sunyp_IM
Thu, 2020-05-28 23:07
Normal topic Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)?
by Corvin » Wed, 2020-12-16 04:58
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483 by Corvin
Wed, 2020-12-30 09:21
Normal topic Segfault error while running MR Rosetta in Phenix
by memilton » Thu, 2021-12-16 09:09
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200 by memilton
Thu, 2021-12-16 09:09
Normal topic Helical Symmetry Axis
by Sandy » Tue, 2016-05-31 18:48
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1,344 by Sandy
Tue, 2016-05-31 18:48
Normal topic new BUNS for FunFolDes run
by tatsiana.bylund » Wed, 2019-08-14 20:57
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626 by tatsiana.bylund
Wed, 2019-08-14 20:57
Normal topic FlexPepDock ab initio: behavior without fragment files
by nrollins » Mon, 2021-07-26 14:16
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246 by nrollins
Mon, 2021-07-26 14:16
Normal topic Design of multimeric protein
by ldlamini » Mon, 2021-01-11 07:23
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382 by ldlamini
Mon, 2021-01-11 07:23
Normal topic ligand dock into HEM containg pdb
by syntekabio2019 » Thu, 2022-01-20 03:05
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210 by syntekabio2019
Thu, 2022-01-20 03:05
Normal topic behind threading protocol
by fred » Tue, 2011-10-25 05:37
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1,848 by fred
Mon, 2014-04-21 06:47
Normal topic Using GlycanDock and the Antibody Affinity Maturation protocol.
by tbelec » Mon, 2022-02-28 12:37
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172 by tbelec
Mon, 2022-02-28 12:37
Normal topic How to design the anitgen-antibody interface
by Sunyp_IM » Tue, 2017-12-12 18:44
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869 by Sunyp_IM
Tue, 2017-12-12 18:44
Normal topic Symmetry mode in Remodel for N-terminal extension
by yvonne.chan2 » Mon, 2019-11-04 13:41
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754 by yvonne.chan2
Mon, 2019-11-04 13:41
Normal topic zero standard deviation of I_sc in protein-protein docking
by rohi » Fri, 2020-07-03 22:19
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433 by rohi
Fri, 2020-07-03 22:20
Normal topic Segfault with Pepspec
by almeida85 » Thu, 2021-02-11 02:56
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343 by almeida85
Thu, 2021-02-11 02:56
Normal topic snugdock run error: Sequence for partner1 does not match first member of ensemble1
by pagumaaaaa » Fri, 2022-03-25 01:21
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73 by pagumaaaaa
Fri, 2022-03-25 01:21
Normal topic Side-chain grafting at the fixed protein and position
by Kazu » Wed, 2020-05-20 08:49
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434 by Kazu
Wed, 2020-05-20 08:49
Normal topic core.pose.util: [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard
by AlfredoKCL » Sat, 2020-11-07 18:21
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644 by AlfredoKCL
Sat, 2020-11-07 18:21
Normal topic Docking protein complexes when constrained by oligomer symmetry
by msk » Tue, 2014-06-03 11:09
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1,172 by msk
Tue, 2014-06-03 11:09
Normal topic Extracting top score PIPER models
by almeida85 » Mon, 2020-08-31 07:17
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540 by almeida85
Mon, 2020-08-31 07:17
Normal topic Error Implementing Match Style Constraints
by pwging13 » Thu, 2019-12-19 09:53
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606 by pwging13
Thu, 2019-12-19 09:53
Normal topic cartesian_ddg crashes when the mutfile contains multiple mutations to non-canonical residues
by ValentinaSora » Sun, 2020-05-24 12:32
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662 by ValentinaSora
Sun, 2020-05-24 12:32
Normal topic Symmetric assembly and output reconstruction
by felipet » Wed, 2014-07-02 10:23
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1,077 by felipet
Wed, 2014-07-02 10:23
Normal topic algebric library for rosetta
by yigallah » Mon, 2014-12-15 08:46
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1,051 by yigallah
Mon, 2014-12-15 08:46
Normal topic appropriate sampling for protein docking to a multi chain assembly
by SWM » Fri, 2020-01-24 11:22
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474 by SWM
Fri, 2020-01-24 11:22
Normal topic Bug Report - Encoding issue
by daniloboskovic » Tue, 2020-08-04 07:02
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382 by daniloboskovic
Tue, 2020-08-04 07:02
Normal topic Weighted scores??
by sizhang » Wed, 2018-12-05 15:22
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648 by sizhang
Wed, 2018-12-05 15:22
Normal topic flexpepdcok of lipid conjugated peptide with glyco protein.
by ravi.thakkkar369 » Fri, 2020-12-18 13:00
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370 by ravi.thakkkar369
Fri, 2020-12-18 13:00
Normal topic DNA-protein docking
by ksteczk » Sat, 2020-04-11 11:23
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774 by ksteczk
Sat, 2020-04-11 11:23
Normal topic Pepspec Anchor Dock
by Soler » Wed, 2020-09-16 19:08
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400 by Soler
Wed, 2020-09-16 19:08
Normal topic Repacker vs minimization
by Elijah_Hix » Fri, 2021-07-02 07:25
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247 by Elijah_Hix
Fri, 2021-07-02 07:25
Normal topic NCAA Rotamers for Cyclosporin
by marinok » Mon, 2020-09-28 14:11
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558 by marinok
Mon, 2020-09-28 14:11
Normal topic cluster,how to get the statistic data
by MajorID » Wed, 2011-06-08 09:20
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1,616 by MajorID
Mon, 2014-04-21 06:47
Normal topic ddg_monomer: if MPI executable is reproducible and efficient?
by lanselibai » Sun, 2015-01-11 09:48
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1,277 by lanselibai
Sun, 2015-01-11 10:50
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Mon, 2016-01-04 11:26
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1,169 by achambe
Mon, 2016-01-04 11:26
Normal topic RosettaCM
by jlawrie » Fri, 2020-08-14 14:09
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819 by jlawrie
Fri, 2020-08-14 14:09
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
0
969 by a-eatemadi@razi...
Mon, 2017-12-04 23:52
Normal topic Residue selector
by Alison_Yajie » Wed, 2020-06-17 19:57
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462 by Alison_Yajie
Thu, 2020-06-18 09:47
Normal topic FastRelaxMover parameters for antibody-antigen interaction analysis
by samuel_k » Thu, 2022-01-27 01:08
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229 by samuel_k
Thu, 2022-01-27 01:08
Normal topic RosettaMatch and CST files
by mwfranklin » Mon, 2016-07-25 11:49
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1,715 by mwfranklin
Mon, 2016-07-25 11:49
Normal topic how to run ala_scan.xml
by xinmiaohe » Mon, 2019-08-26 09:38
0
613 by xinmiaohe
Mon, 2019-08-26 09:38
Normal topic Multistate design issues with -run:msd_job_dist option and MSDMover
by elaine.thai » Wed, 2020-05-13 18:07
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666 by elaine.thai
Wed, 2020-05-13 18:07
Normal topic minirosetta: how to reserve (inter-chain) disulfides after relax ?
by lanselibai » Sat, 2015-01-24 10:56
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1,880 by lanselibai
Thu, 2015-01-29 00:50
Normal topic Comparative Modeling Templates for Protein with Multiple Domains
by Morrian_Lynn » Wed, 2020-03-04 10:42
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529 by Morrian_Lynn
Wed, 2020-03-04 10:42
Normal topic hpatch commands and how to identify patches
by Bianca Oliva » Thu, 2021-04-29 04:02
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382 by Bianca Oliva
Thu, 2021-04-29 04:02
Normal topic Modelling humanized camelid like antibody
by terabithia2011 » Tue, 2021-01-26 10:12
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405 by terabithia2011
Tue, 2021-01-26 10:12
Normal topic simple_cycpep_predict thioether_lariat option
by Ken » Mon, 2022-03-14 15:14
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110 by Ken
Mon, 2022-03-14 15:14
Normal topic Docking the border segments of coiled coils in parallel orientation
by Corvin » Mon, 2019-12-02 02:00
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591 by Corvin
Mon, 2019-12-02 02:00
Normal topic about “protein mimic designer”
by sia » Wed, 2022-04-27 19:59
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52 by sia
Wed, 2022-04-27 19:59
Normal topic Fixing and Building disulfide bonds in homology modeling
by kamau » Wed, 2014-09-24 11:33
0
2,046 by kamau
Wed, 2014-09-24 11:35

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