You are here

Rosetta 3 - Applications

Pages

Topic / Topic starter Repliessort descending Views Last post
Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
0
7,620 by admin
Fri, 2015-09-04 16:17
Normal topic Using abinition to predict a new (previously unsolved) structure.
by ac.research » Mon, 2017-01-09 00:59
0
866 by ac.research
Mon, 2017-01-09 00:59
Normal topic metalloprotein ab initio with glutamic acid
by inorgchem » Tue, 2020-06-16 20:45
0
282 by inorgchem
Tue, 2020-06-16 20:45
Normal topic Writing down properties for new atom types
by Corvin » Tue, 2021-01-12 04:30
0
194 by Corvin
Wed, 2021-01-13 04:00
Normal topic clashes created with enzdes
by listofdina » Mon, 2021-08-02 06:51
0
127 by listofdina
Mon, 2021-08-02 06:51
Normal topic Reproduce Robetta's ddg values of interface alanine scan using Rosetta?
by cossio » Mon, 2015-01-19 07:14
0
2,273 by cossio
Mon, 2015-01-19 07:14
Normal topic DDG_monomer ΔΔG question
by asbelx » Fri, 2018-04-20 03:31
0
688 by asbelx
Fri, 2018-04-20 03:33
Normal topic Global Docking with carbohydrates
by ChiauShu » Sat, 2020-08-22 20:16
0
318 by ChiauShu
Sat, 2020-08-22 20:16
Normal topic Creating fragment files for proteins less than 27 aa in length
by Poladu » Tue, 2021-01-26 07:50
0
229 by Poladu
Tue, 2021-01-26 07:50
Normal topic Flex_ddG crashes when attempting to move 2 chains (e.g. chains_to_move = A,C)
by jcampecino » Wed, 2020-05-13 12:22
0
397 by jcampecino
Wed, 2020-05-13 12:22
Normal topic comparative modelling of a complex
by sdh_h » Sun, 2017-12-17 06:07
0
642 by sdh_h
Sun, 2017-12-17 06:07
Normal topic Metal Ion in symmetric design
by tschiex » Wed, 2020-07-08 05:28
0
342 by tschiex
Wed, 2020-07-08 05:28
Normal topic fragment_picker bug
by David Hoover » Wed, 2012-02-29 11:43
0
1,329 by David Hoover
Mon, 2014-04-21 06:47
Normal topic Can remodel really handle multiple insertions in one simulation?
by lanselibai » Sat, 2019-12-28 12:51
0
402 by lanselibai
Sat, 2019-12-28 12:51
Normal topic denovo_density don't output a pdb file
by ylwang » Sun, 2018-11-18 17:51
0
537 by ylwang
Sun, 2018-11-18 17:51
Normal topic mp_transform optimize with franklin2019 scoring
by benhardy » Thu, 2020-05-28 08:35
0
517 by benhardy
Thu, 2020-05-28 08:45
Normal topic RemodelMover and Input Pose
by ozyo » Tue, 2020-12-29 09:41
0
259 by ozyo
Tue, 2020-12-29 09:41
Normal topic Pepspec Anchor Dock
by Soler » Fri, 2020-09-18 08:09
0
425 by Soler
Fri, 2020-09-18 08:09
Normal topic Patch to impose tetrahedral geometry on backbone O atom
by georg » Thu, 2021-04-08 09:30
0
151 by georg
Thu, 2021-04-08 09:31
Normal topic Domain insertion with Non-CAA
by mwfranklin » Mon, 2017-01-16 12:30
0
1,230 by mwfranklin
Mon, 2017-01-16 12:30
Normal topic Segment File Gen - no ouput
by CATarr » Wed, 2019-10-09 19:05
0
459 by CATarr
Wed, 2019-10-09 19:05
Normal topic RosettaAntibody - No matching templates for CDR1
by agctomer » Tue, 2021-01-19 22:45
0
234 by agctomer
Tue, 2021-01-19 22:45
Normal topic Flexpepdock I_hb scoring term
by mbakalar » Fri, 2018-08-31 13:05
0
624 by mbakalar
Fri, 2018-08-31 13:06
Normal topic General question regarding ligand-docking
by Alison_Yajie » Thu, 2020-05-07 09:48
0
338 by Alison_Yajie
Thu, 2020-05-07 09:48
Normal topic Modelling of multi-component symmetrical structures
by LanMei » Wed, 2020-10-07 09:58
0
383 by LanMei
Wed, 2020-10-07 09:58
Normal topic Problem with Scoring function and PlaceStub mover
by a-eatemadi@razi... » Sat, 2018-04-07 09:22
0
643 by a-eatemadi@razi...
Sat, 2018-04-07 09:24
Normal topic What is interface_cutoff_distance? And why did my residues outside this value get designed?
by chrisHKL » Fri, 2020-02-28 14:52
0
388 by chrisHKL
Fri, 2020-02-28 14:52
Normal topic clustering output file has few structures
by fabiotrovato » Mon, 2020-08-17 11:37
0
298 by fabiotrovato
Mon, 2020-08-17 11:37
Normal topic wallpaper symmetry definition file
by aaj » Fri, 2016-02-26 08:40
0
942 by aaj
Fri, 2016-02-26 08:40
Normal topic Interesting scoring performance in flexpepdock against random peptides
by ziqi1234 » Fri, 2017-12-08 07:52
0
658 by ziqi1234
Fri, 2017-12-08 07:52
Normal topic An error with score app
by Genta » Tue, 2019-10-29 18:46
0
551 by Genta
Tue, 2019-10-29 18:46
Normal topic antibody.mpi.linuxgccrelease some antibodies failing to model
by drewaight » Mon, 2020-11-02 17:07
0
398 by drewaight
Mon, 2020-11-02 17:07
Normal topic Rosetta remodel - including an RNA ligand
by daniloboskovic » Fri, 2020-04-10 04:24
0
447 by daniloboskovic
Fri, 2020-04-10 04:24
Normal topic Fragment library (vall file) from Robetta?
by alex » Sun, 2017-02-19 08:12
0
1,103 by alex
Sun, 2017-02-19 08:12
Normal topic using piper-flexpepdock
by syntekabio2019 » Thu, 2019-12-12 01:22
0
587 by syntekabio2019
Thu, 2019-12-12 01:22
Normal topic Ab Initio folding with HEM ligand molecule
by jseco » Fri, 2021-03-05 06:49
0
205 by jseco
Mon, 2021-03-08 03:40
Normal topic Error when using Remodel on a protein with a chemically bound ligand
by Pappmaschee » Wed, 2020-12-16 09:23
0
303 by Pappmaschee
Wed, 2020-12-16 09:23
Normal topic membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template?
by fglaser » Thu, 2011-04-07 07:57
0
1,762 by fglaser
Mon, 2014-04-21 06:47
Normal topic FlexPepDocking
by jlawrie » Tue, 2020-09-15 12:52
0
335 by jlawrie
Tue, 2020-09-15 12:52
Normal topic csrosetta.org login
by jfeuva » Tue, 2014-12-09 14:49
0
23,918 by jfeuva
Tue, 2014-12-09 14:49
Normal topic Zero residues error in docking
by cjy318 » Tue, 2020-07-28 19:47
0
370 by cjy318
Tue, 2020-07-28 19:47
Normal topic rosetta remodel and designing helix extension
by dhirajks » Thu, 2018-12-13 19:34
0
634 by dhirajks
Thu, 2018-12-13 19:34
Normal topic constraints in Rosetta ligand docking (AddorRemoveMatchCsts, Addconstraints Mover, and ConstraintSetMover)
by rohi » Mon, 2021-01-11 13:32
0
284 by rohi
Mon, 2021-01-11 13:58
Normal topic FlexPepDock bug? Constraints do not appear in total_score?
by nrollins » Mon, 2021-07-26 14:29
0
115 by nrollins
Mon, 2021-07-26 14:29
Normal topic Secondary Matching build_sets Error
by enmirts » Wed, 2018-03-28 10:33
0
615 by enmirts
Wed, 2018-03-28 10:34
Normal topic multi ligand docking using rosetta script
by syntekabio2019 » Tue, 2021-04-13 19:31
0
185 by syntekabio2019
Tue, 2021-04-13 19:31
Normal topic FloppyTail as a rosettascripts file
by tiagogomes89 » Mon, 2015-01-19 02:45
0
977 by tiagogomes89
Mon, 2015-01-19 02:45
Normal topic Fewer than expected structures in clustering output
by fabiotrovato » Thu, 2020-08-20 00:59
0
314 by fabiotrovato
Thu, 2020-08-20 00:59
Normal topic Folding and Docking using Symmetry
by danielles » Wed, 2012-09-12 11:32
0
1,443 by danielles
Mon, 2014-04-21 06:47
Normal topic Ligand docking with constraint
by Alison_Yajie » Wed, 2020-06-24 12:34
0
336 by Alison_Yajie
Wed, 2020-06-24 12:34
Normal topic Question with rosetta AbPredict tutorial
by terabithia2011 » Mon, 2021-01-25 09:24
0
208 by terabithia2011
Mon, 2021-01-25 09:24
Normal topic application for affinity optimization
by wentlewi » Fri, 2020-03-13 03:24
0
464 by wentlewi
Fri, 2020-03-13 03:24
Normal topic FastRelax Refinement severe clashes
by Victor Tobiasson » Thu, 2021-05-20 06:55
0
159 by Victor Tobiasson
Thu, 2021-05-20 06:55
Normal topic Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0.
by daniloboskovic » Fri, 2019-11-08 08:24
0
1,195 by daniloboskovic
Fri, 2019-11-08 08:27
Normal topic Does antibody_numbering_converter support camelid antibody?
by mxp » Tue, 2020-07-07 01:21
0
334 by mxp
Tue, 2020-07-07 01:21
Normal topic The problems on pdb renumbering
by Sunyp_IM » Sun, 2017-08-20 06:39
0
1,464 by Sunyp_IM
Sun, 2017-08-20 06:39
Normal topic How many iterations of remodel is enough?
by daniloboskovic » Thu, 2020-07-16 08:07
0
319 by daniloboskovic
Thu, 2020-07-16 08:14
Normal topic extract docking pose from ligand docking silent file
by Ruska322 » Sat, 2019-09-07 05:21
0
529 by Ruska322
Sat, 2019-09-07 05:21
Normal topic backrub application, resfile, and pivot_residues
by tylerborrman » Tue, 2016-12-06 14:46
0
760 by tylerborrman
Tue, 2016-12-06 14:46
Normal topic Dock two domains using topology broker
by sn » Thu, 2017-10-05 17:07
0
656 by sn
Thu, 2017-10-05 17:07
Normal topic "Residue 7 was disulfide bonded but had no partner" with antibody.linuxgccrelease
by Sunyp_IM » Thu, 2020-06-04 05:53
0
346 by Sunyp_IM
Thu, 2020-06-04 05:54
Normal topic PDB Clustering
by code_Monkey » Mon, 2021-04-05 10:40
0
189 by code_Monkey
Mon, 2021-04-05 10:40
Normal topic RNP structure prediction flags
by daniloboskovic » Fri, 2019-08-16 11:10
0
513 by daniloboskovic
Fri, 2019-08-16 11:17
Normal topic Robetta ab initio - TrRosetta for membrane proteins
by benhardy » Wed, 2020-09-30 08:42
0
637 by benhardy
Wed, 2020-09-30 08:42
Normal topic Topobuilder segmentation fault
by tatsiana.bylund » Mon, 2021-08-09 07:10
0
142 by tatsiana.bylund
Mon, 2021-08-09 07:10
Normal topic FlexPepDock Multi chain receptor
by evo_umich » Mon, 2018-04-02 12:13
0
729 by evo_umich
Mon, 2018-04-02 12:13
Normal topic RosettaAntibody3 - How can I model an extended H3?
by brspurri » Fri, 2020-08-28 09:11
0
363 by brspurri
Fri, 2020-08-28 09:11
Normal topic Scoring after HBNet
by HHL_SIUC » Wed, 2020-07-01 10:49
0
329 by HHL_SIUC
Wed, 2020-07-01 10:49
Normal topic Pepspec options
by shaunmk » Mon, 2015-04-27 02:33
0
1,197 by shaunmk
Mon, 2015-04-27 02:33
Normal topic Finding lowest energy structure among generated structures
by Marius1987 » Sun, 2016-04-10 11:38
0
1,057 by Marius1987
Sun, 2016-04-10 12:09
Normal topic What means "[ ERROR ] TIME_STAMP: AbrelaxMover: finished ...NO_BATCH S_0001."
by Corvin » Thu, 2020-04-02 00:16
0
440 by Corvin
Thu, 2020-04-02 00:16
Normal topic help surface_docking peptide on ice
by engand93 » Wed, 2019-03-27 02:43
0
507 by engand93
Wed, 2019-03-27 02:43
Normal topic pmut_scan_parallel
by G Mustafa » Wed, 2018-10-17 05:41
0
752 by G Mustafa
Wed, 2018-10-17 05:41
Normal topic ligand_docking: ligand preparation
by Alison_Yajie » Thu, 2020-05-21 09:42
0
363 by Alison_Yajie
Thu, 2020-05-21 09:42
Normal topic Helical Symmetry Axis
by Sandy » Tue, 2016-05-31 18:48
0
1,226 by Sandy
Tue, 2016-05-31 18:48
Normal topic RosettaAntibody3 core.pose.util error
by linhhoang157 » Tue, 2020-07-28 12:40
0
421 by linhhoang157
Tue, 2020-07-28 12:40
Normal topic Problems with mpi version of antibody.linuxgccrelease
by Sunyp_IM » Thu, 2020-05-28 23:06
0
455 by Sunyp_IM
Thu, 2020-05-28 23:07
Normal topic Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)?
by Corvin » Wed, 2020-12-16 04:58
0
276 by Corvin
Wed, 2020-12-30 09:21
Normal topic Design of multimeric protein
by ldlamini » Mon, 2021-01-11 07:23
0
226 by ldlamini
Mon, 2021-01-11 07:23
Normal topic new BUNS for FunFolDes run
by tatsiana.bylund » Wed, 2019-08-14 20:57
0
497 by tatsiana.bylund
Wed, 2019-08-14 20:57
Normal topic FlexPepDock ab initio: behavior without fragment files
by nrollins » Mon, 2021-07-26 14:16
0
104 by nrollins
Mon, 2021-07-26 14:16
Normal topic Docking protein complexes when constrained by oligomer symmetry
by msk » Tue, 2014-06-03 11:09
0
1,075 by msk
Tue, 2014-06-03 11:09
Normal topic Extracting top score PIPER models
by almeida85 » Mon, 2020-08-31 07:17
0
364 by almeida85
Mon, 2020-08-31 07:17
Normal topic How to design the anitgen-antibody interface
by Sunyp_IM » Tue, 2017-12-12 18:44
0
744 by Sunyp_IM
Tue, 2017-12-12 18:44
Normal topic Symmetry mode in Remodel for N-terminal extension
by yvonne.chan2 » Mon, 2019-11-04 13:41
0
600 by yvonne.chan2
Mon, 2019-11-04 13:41
Normal topic zero standard deviation of I_sc in protein-protein docking
by rohi » Fri, 2020-07-03 22:19
0
324 by rohi
Fri, 2020-07-03 22:20
Normal topic Segfault with Pepspec
by almeida85 » Thu, 2021-02-11 02:56
0
185 by almeida85
Thu, 2021-02-11 02:56
Normal topic Molecular Replacement with multiple chains
by brspurri » Fri, 2011-06-10 08:25
0
1,735 by brspurri
Mon, 2014-04-21 06:47
Normal topic Side-chain grafting at the fixed protein and position
by Kazu » Wed, 2020-05-20 08:49
0
313 by Kazu
Wed, 2020-05-20 08:49
Normal topic core.pose.util: [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard
by AlfredoKCL » Sat, 2020-11-07 18:21
0
444 by AlfredoKCL
Sat, 2020-11-07 18:21
Normal topic Symmetric assembly and output reconstruction
by felipet » Wed, 2014-07-02 10:23
0
978 by felipet
Wed, 2014-07-02 10:23
Normal topic Error Implementing Match Style Constraints
by pwging13 » Thu, 2019-12-19 09:53
0
477 by pwging13
Thu, 2019-12-19 09:53
Normal topic DNA Interface design
by zadie1118 » Wed, 2011-06-22 07:05
0
1,717 by zadie1118
Mon, 2014-04-21 06:47
Normal topic Can't find RosettaRemodel in Rosetta 3.4
by petrikigor » Mon, 2012-12-03 13:56
0
1,365 by petrikigor
Mon, 2014-04-21 06:47
Normal topic cartesian_ddg crashes when the mutfile contains multiple mutations to non-canonical residues
by ValentinaSora » Sun, 2020-05-24 12:32
0
488 by ValentinaSora
Sun, 2020-05-24 12:32
Normal topic Weighted scores??
by sizhang » Wed, 2018-12-05 15:22
0
550 by sizhang
Wed, 2018-12-05 15:22
Normal topic flexpepdcok of lipid conjugated peptide with glyco protein.
by ravi.thakkkar369 » Fri, 2020-12-18 13:00
0
239 by ravi.thakkkar369
Fri, 2020-12-18 13:00
Normal topic DNA-protein docking
by ksteczk » Sat, 2020-04-11 11:23
0
536 by ksteczk
Sat, 2020-04-11 11:23
Normal topic Pepspec Anchor Dock
by Soler » Wed, 2020-09-16 19:08
0
286 by Soler
Wed, 2020-09-16 19:08
Normal topic Repacker vs minimization
by Elijah_Hix » Fri, 2021-07-02 07:25
0
93 by Elijah_Hix
Fri, 2021-07-02 07:25

Pages

New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - Applications