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Rosetta 3 - Applications
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FAQ by admin » Mon, 2010-08-30 04:18 |
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16,823 |
by admin Fri, 2015-09-04 16:17 |
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minirosetta: how to reserve (inter-chain) disulfides after relax ? by lanselibai » Sat, 2015-01-24 10:56 |
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2,073 |
by lanselibai Thu, 2015-01-29 00:50 |
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Comparative Modeling Templates for Protein with Multiple Domains by Morrian_Lynn » Wed, 2020-03-04 10:42 |
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707 |
by Morrian_Lynn Wed, 2020-03-04 10:42 |
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hpatch commands and how to identify patches by Bianca Oliva » Thu, 2021-04-29 04:02 |
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691 |
by Bianca Oliva Thu, 2021-04-29 04:02 |
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CS-Rosetta cofactor by martongadanecz » Wed, 2022-08-03 01:05 |
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476 |
by martongadanecz Wed, 2022-08-03 01:05 |
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Modelling humanized camelid like antibody by terabithia2011 » Tue, 2021-01-26 10:12 |
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632 |
by terabithia2011 Tue, 2021-01-26 10:12 |
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simple_cycpep_predict thioether_lariat option by Ken » Mon, 2022-03-14 15:14 |
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564 |
by Ken Mon, 2022-03-14 15:14 |
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RosettaMatch and CST files by mwfranklin » Mon, 2016-07-25 11:49 |
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1,962 |
by mwfranklin Mon, 2016-07-25 11:49 |
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how to run ala_scan.xml by xinmiaohe » Mon, 2019-08-26 09:38 |
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842 |
by xinmiaohe Mon, 2019-08-26 09:38 |
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Docking of multichain oligomers by sdh_h » Wed, 2020-03-25 12:43 |
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834 |
by sdh_h Wed, 2020-03-25 12:43 |
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Docking the border segments of coiled coils in parallel orientation by Corvin » Mon, 2019-12-02 02:00 |
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797 |
by Corvin Mon, 2019-12-02 02:00 |
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about “protein mimic designer” by sia » Wed, 2022-04-27 19:59 |
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559 |
by sia Wed, 2022-04-27 19:59 |
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Fixing and Building disulfide bonds in homology modeling by kamau » Wed, 2014-09-24 11:33 |
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2,276 |
by kamau Wed, 2014-09-24 11:35 |
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Problems with waters in CoupledMoves application by Corvin » Tue, 2021-11-16 07:16 |
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656 |
by Corvin Tue, 2021-11-16 07:22 |
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How to change the axes of "-spin" in docking_protocol by Zehui Zhou » Mon, 2023-02-13 22:06 |
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1,640 |
by Zehui Zhou Mon, 2023-02-13 22:06 |
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error in loop remodeling by syntekabio2019 » Wed, 2023-04-05 01:00 |
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75 |
by syntekabio2019 Wed, 2023-04-05 01:01 |
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Nanobody design by chandana » Tue, 2022-08-09 20:36 |
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586 |
by chandana Tue, 2022-08-09 20:36 |
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crazy loopmodel: linear output pdbs by fred » Wed, 2014-12-03 12:27 |
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1,215 |
by fred Wed, 2014-12-03 12:28 |
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Enzyme Design Not Editing Structure by liuwenxi » Wed, 2022-05-18 10:12 |
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540 |
by liuwenxi Wed, 2022-05-18 10:12 |
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Pepspec - sequence sampling by almeida85 » Thu, 2022-06-23 04:05 |
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486 |
by almeida85 Thu, 2022-06-23 05:50 |
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charge grid in rosetta ligand docking using rosetta script by syntekabio2019 » Mon, 2022-01-17 23:53 |
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706 |
by syntekabio2019 Mon, 2022-01-17 23:53 |
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remodel: what are the exact meanings of notations for secondary structure? by lanselibai » Sat, 2015-01-17 04:53 |
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1,342 |
by lanselibai Sat, 2015-01-17 07:57 |
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DDG and interaction score problem by a-eatemadi@razi... » Mon, 2018-04-09 22:54 |
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1,011 |
by a-eatemadi@razi... Mon, 2018-04-09 22:54 |
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Repeatability of DDG calculation by jennifer » Wed, 2015-04-08 05:29 |
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1,441 |
by jennifer Wed, 2015-04-08 05:29 |
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structure prediction by MA » Wed, 2018-09-05 00:50 |
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813 |
by MA Wed, 2018-09-05 00:50 |
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Error reading in/out glycosylated silent file - "Can't create a polymer bond after residue due to incompatible type" by amorin » Mon, 2021-09-27 12:16 |
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662 |
by amorin Mon, 2021-09-27 12:16 |
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score is 0 in the output? - RosettaScripts by chrisHKL » Thu, 2020-03-05 09:33 |
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765 |
by chrisHKL Thu, 2020-03-05 12:58 |
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Issues with modifying dock.xml for multiple ligand docking by DGR95 » Fri, 2021-05-14 12:51 |
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568 |
by DGR95 Fri, 2021-05-14 12:51 |
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Include MHC alpha helices in loop modelling protocol for pMHC complex by Roberto » Thu, 2022-08-04 07:22 |
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469 |
by Roberto Thu, 2022-08-04 07:22 |
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how to generate the whole molecule that contains all the symmetric chains by Sunyp_IM » Sun, 2017-12-10 19:43 |
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1,028 |
by Sunyp_IM Sun, 2017-12-10 19:43 |
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ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-07-02 07:05 |
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733 |
by Alison_Yajie Thu, 2020-07-02 07:10 |
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core.optimization.LineMinimizer: [ ERROR ] Inaccurate G! by aralz » Thu, 2021-02-11 00:46 |
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728 |
by aralz Thu, 2021-02-11 00:46 |
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protein relax by Alison_Yajie » Tue, 2020-05-19 08:29 |
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702 |
by Alison_Yajie Tue, 2020-05-19 08:29 |
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Grafting using antibody.mpi.linuxgccrelease and specifying custom template which doesnt have pdb id. by SubhaK » Wed, 2023-01-18 23:33 |
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646 |
by SubhaK Wed, 2023-01-18 23:33 |
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Lots of Prepacking Jobs for Snugdock Failing by katherinemccoy » Tue, 2023-02-28 18:17 |
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2,001 |
by katherinemccoy Mon, 2023-03-13 19:10 |
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Use membrane or non-membrane weights in RosettaCM for a hexon in virus capsid? by lanselibai » Sat, 2020-04-11 02:10 |
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782 |
by lanselibai Sat, 2020-04-11 02:10 |
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using DARC in rosetta by syntekabio2019 » Thu, 2019-12-12 01:27 |
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803 |
by syntekabio2019 Thu, 2019-12-12 01:27 |
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Flex_ddG突变设计 by wangtao » Thu, 2022-05-05 02:46 |
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607 |
by wangtao Thu, 2022-05-05 02:46 |
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AbinitioRelax detect_disulf_tolerance by aarono » Tue, 2020-06-02 00:13 |
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747 |
by aarono Tue, 2020-06-02 00:13 |
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Trehalose by jpfuenzalidawx » Thu, 2022-09-08 00:49 |
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416 |
by jpfuenzalidawx Thu, 2022-09-08 00:49 |
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Limit on backbone movement in relax? by SWM » Fri, 2020-01-24 07:35 |
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750 |
by SWM Fri, 2020-01-24 07:35 |
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What is an SS0 predictor? by ojmel » Fri, 2021-04-02 14:25 |
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540 |
by ojmel Mon, 2021-04-12 07:50 |
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Local docking- should I use KIC? by seayoung lee » Fri, 2022-05-27 02:45 |
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557 |
by seayoung lee Fri, 2022-05-27 02:45 |
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Ligand Docking with ROSETTA by sc19 » Thu, 2022-07-14 01:32 |
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508 |
by sc19 Thu, 2022-07-14 01:34 |
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Using abinition to predict a new (previously unsolved) structure. by ac.research » Mon, 2017-01-09 00:59 |
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1,150 |
by ac.research Mon, 2017-01-09 00:59 |
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metalloprotein ab initio with glutamic acid by inorgchem » Tue, 2020-06-16 20:45 |
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550 |
by inorgchem Tue, 2020-06-16 20:45 |
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Writing down properties for new atom types by Corvin » Tue, 2021-01-12 04:30 |
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537 |
by Corvin Wed, 2021-01-13 04:00 |
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Relax in membrane pull my protein out of the membrane by Martin Floor » Wed, 2022-01-26 07:46 |
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725 |
by Martin Floor Wed, 2022-01-26 07:46 |
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clashes created with enzdes by listofdina » Mon, 2021-08-02 06:51 |
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564 |
by listofdina Mon, 2021-08-02 06:51 |
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snugdock: constrained backbone by mahendra » Mon, 2022-11-14 02:51 |
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1,407 |
by mahendra Mon, 2022-11-14 02:51 |
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Molecular Replacement with multiple chains by brspurri » Fri, 2011-06-10 08:25 |
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2,010 |
by brspurri Mon, 2014-04-21 06:47 |
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DNA Interface design by zadie1118 » Wed, 2011-06-22 07:05 |
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2,012 |
by zadie1118 Mon, 2014-04-21 06:47 |
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Reproduce Robetta's ddg values of interface alanine scan using Rosetta? by cossio » Mon, 2015-01-19 07:14 |
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2,566 |
by cossio Mon, 2015-01-19 07:14 |
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DDG_monomer ΔΔG question by asbelx » Fri, 2018-04-20 03:31 |
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994 |
by asbelx Fri, 2018-04-20 03:33 |
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Global Docking with carbohydrates by ChiauShu » Sat, 2020-08-22 20:16 |
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708 |
by ChiauShu Sat, 2020-08-22 20:16 |
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Creating fragment files for proteins less than 27 aa in length by Poladu » Tue, 2021-01-26 07:50 |
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613 |
by Poladu Tue, 2021-01-26 07:50 |
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Flex_ddG crashes when attempting to move 2 chains (e.g. chains_to_move = A,C) by jcampecino » Wed, 2020-05-13 12:22 |
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809 |
by jcampecino Wed, 2020-05-13 12:22 |
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comparative modelling of a complex by sdh_h » Sun, 2017-12-17 06:07 |
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909 |
by sdh_h Sun, 2017-12-17 06:07 |
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Metal Ion in symmetric design by tschiex » Wed, 2020-07-08 05:28 |
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678 |
by tschiex Wed, 2020-07-08 05:28 |
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denovo_density don't output a pdb file by ylwang » Sun, 2018-11-18 17:51 |
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870 |
by ylwang Sun, 2018-11-18 17:51 |
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mp_transform optimize with franklin2019 scoring by benhardy » Thu, 2020-05-28 08:35 |
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942 |
by benhardy Thu, 2020-05-28 08:45 |
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Remodel's problem in treatment with non-protein residues by Corvin » Mon, 2021-12-13 09:07 |
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638 |
by Corvin Mon, 2021-12-13 09:07 |
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Error with xml script by almeida85 » Tue, 2023-03-28 01:53 |
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103 |
by almeida85 Tue, 2023-05-16 01:00 |
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Can remodel really handle multiple insertions in one simulation? by lanselibai » Sat, 2019-12-28 12:51 |
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705 |
by lanselibai Sat, 2019-12-28 12:51 |
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minimize_ppi.mpi.linuxgccrelease doesn't use jd2? by e3lm » Tue, 2022-05-17 11:58 |
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559 |
by e3lm Tue, 2022-05-17 11:58 |
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RemodelMover and Input Pose by ozyo » Tue, 2020-12-29 09:41 |
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676 |
by ozyo Tue, 2020-12-29 09:41 |
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I need help with cst file the paper: De Novo Computational Design of Retro-Aldol Enzymes by Wenithor » Thu, 2022-01-06 12:20 |
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696 |
by Wenithor Thu, 2022-01-06 12:20 |
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Simple_cycpep_predict with crosslinker BBMB by Ken » Tue, 2023-05-09 08:52 |
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41 |
by Ken Tue, 2023-05-09 08:52 |
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Pepspec Anchor Dock by Soler » Fri, 2020-09-18 08:09 |
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824 |
by Soler Fri, 2020-09-18 08:09 |
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Symmetry definition question by mrconde96 » Sun, 2022-10-02 05:34 |
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1,019 |
by mrconde96 Sun, 2022-10-02 05:34 |
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Patch to impose tetrahedral geometry on backbone O atom by georg » Thu, 2021-04-08 09:30 |
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551 |
by georg Thu, 2021-04-08 09:31 |
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Problem with Scoring function and PlaceStub mover by a-eatemadi@razi... » Sat, 2018-04-07 09:22 |
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969 |
by a-eatemadi@razi... Sat, 2018-04-07 09:24 |
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What is interface_cutoff_distance? And why did my residues outside this value get designed? by chrisHKL » Fri, 2020-02-28 14:52 |
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754 |
by chrisHKL Fri, 2020-02-28 14:52 |
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clustering output file has few structures by fabiotrovato » Mon, 2020-08-17 11:37 |
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593 |
by fabiotrovato Mon, 2020-08-17 11:37 |
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Domain insertion with Non-CAA by mwfranklin » Mon, 2017-01-16 12:30 |
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1,548 |
by mwfranklin Mon, 2017-01-16 12:30 |
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Segment File Gen - no ouput by CATarr » Wed, 2019-10-09 19:05 |
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734 |
by CATarr Wed, 2019-10-09 19:05 |
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RosettaAntibody - No matching templates for CDR1 by agctomer » Tue, 2021-01-19 22:45 |
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689 |
by agctomer Tue, 2021-01-19 22:45 |
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Generating the 3-mer and 9-mer fragments by Prasoon » Wed, 2022-02-09 09:04 |
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791 |
by Prasoon Wed, 2022-02-09 09:04 |
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Flexpepdock I_hb scoring term by mbakalar » Fri, 2018-08-31 13:05 |
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961 |
by mbakalar Fri, 2018-08-31 13:06 |
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General question regarding ligand-docking by Alison_Yajie » Thu, 2020-05-07 09:48 |
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625 |
by Alison_Yajie Thu, 2020-05-07 09:48 |
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Modelling of multi-component symmetrical structures by LanMei » Wed, 2020-10-07 09:58 |
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756 |
by LanMei Wed, 2020-10-07 09:58 |
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behind threading protocol by fred » Tue, 2011-10-25 05:37 |
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2,035 |
by fred Mon, 2014-04-21 06:47 |
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wallpaper symmetry definition file by aaj » Fri, 2016-02-26 08:40 |
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1,245 |
by aaj Fri, 2016-02-26 08:40 |
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pMHC modelling by Roberto » Thu, 2022-08-04 07:11 |
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448 |
by Roberto Thu, 2022-08-04 07:11 |
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Interesting scoring performance in flexpepdock against random peptides by ziqi1234 » Fri, 2017-12-08 07:52 |
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941 |
by ziqi1234 Fri, 2017-12-08 07:52 |
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An error with score app by Genta » Tue, 2019-10-29 18:46 |
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1,138 |
by Genta Tue, 2019-10-29 18:46 |
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antibody.mpi.linuxgccrelease some antibodies failing to model by drewaight » Mon, 2020-11-02 17:07 |
0 |
919 |
by drewaight Mon, 2020-11-02 17:07 |
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Rosetta DARc suboptimal dockings by ddhoyo » Mon, 2021-10-11 06:18 |
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503 |
by ddhoyo Mon, 2021-10-11 06:18 |
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Snugdock Error: The sequence position requested was greater than the number of residues by stannowitz » Tue, 2023-01-17 07:37 |
0 |
756 |
by stannowitz Tue, 2023-01-17 23:48 |
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SecundaryStructure Filter by Soler » Sun, 2021-11-21 22:20 |
0 |
639 |
by Soler Sun, 2021-11-21 22:20 |
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how to control alignment for energy_based_clustering by xfradera » Tue, 2023-02-28 10:13 |
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1,573 |
by xfradera Tue, 2023-02-28 10:13 |
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Rosetta remodel - including an RNA ligand by daniloboskovic » Fri, 2020-04-10 04:24 |
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777 |
by daniloboskovic Fri, 2020-04-10 04:24 |
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Fragment library (vall file) from Robetta? by alex » Sun, 2017-02-19 08:12 |
0 |
1,436 |
by alex Sun, 2017-02-19 08:12 |
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using piper-flexpepdock by syntekabio2019 » Thu, 2019-12-12 01:22 |
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1,001 |
by syntekabio2019 Thu, 2019-12-12 01:22 |
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Ab Initio folding with HEM ligand molecule by jseco » Fri, 2021-03-05 06:49 |
0 |
572 |
by jseco Mon, 2021-03-08 03:40 |
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Dimeric interface redesign by kjs1728 » Mon, 2022-05-02 21:57 |
0 |
537 |
by kjs1728 Mon, 2022-05-02 21:57 |
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Error when using Remodel on a protein with a chemically bound ligand by Pappmaschee » Wed, 2020-12-16 09:23 |
0 |
815 |
by Pappmaschee Wed, 2020-12-16 09:23 |
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simple_cycpep_predict with N-term acetylation by Ken » Fri, 2021-12-17 09:49 |
0 |
654 |
by Ken Fri, 2021-12-17 09:49 |
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dG_separated values comparison by almeida85 » Mon, 2023-04-24 03:34 |
0 |
71 |
by almeida85 Tue, 2023-05-16 01:02 |
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FlexPepDocking by jlawrie » Tue, 2020-09-15 12:52 |
0 |
703 |
by jlawrie Tue, 2020-09-15 12:52 |
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