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Rosetta 3 - Applications

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
0
17,415 by admin
Fri, 2015-09-04 16:17
Hot topic multiple template homolgy modelling (Page: 1, 2)
by pdbb » Tue, 2012-10-30 08:12
51
60,356 by rmoretti
Fri, 2018-05-18 12:40
Hot topic a trouble during floppytail modeling
by chenchaozhao » Tue, 2011-03-15 03:59
39
39,192 by smlewis
Thu, 2017-06-01 10:02
Hot topic ddG calculation
by malkeet.singh » Sun, 2017-06-25 07:53
32
25,901 by malkeet.singh
Tue, 2017-11-14 04:33
Hot topic Rosetta Scripts: Loop Modeling w. Selective Repacking
by aroop » Mon, 2013-01-07 08:45
24
20,013 by aroop
Mon, 2014-04-21 06:47
Hot topic some application troubles when using resfile flag
by chenchaozhao » Tue, 2011-04-05 00:05
24
27,297 by smlewis
Mon, 2014-04-21 06:47
Hot topic Garbled Ligands from docking_protocol
by skovacs » Tue, 2011-12-20 07:55
21
19,721 by skovacs
Mon, 2014-04-21 06:47
Hot topic rosettaCM not recognizing Mn atom
by banshee » Mon, 2016-09-12 23:33
20
17,133 by rmoretti
Wed, 2018-11-21 15:45
Hot topic Error with recognizing rotamer library atoms
by oerbilgin » Fri, 2011-11-04 15:23
19
29,386 by oerbilgin
Mon, 2014-04-21 06:47
Hot topic homology modeling with end extension
by fred » Mon, 2012-10-08 14:19
19
18,079 by xpzhang
Mon, 2014-04-21 06:47
Hot topic Ab initio with multiple metal ions
by cheyuk » Sun, 2013-12-29 17:58
19
20,809 by masterofpuppets
Tue, 2015-01-27 04:26
Hot topic Fixbb Multiple Resfiles
by protos_heis » Mon, 2012-10-15 10:34
18
15,619 by protos_heis
Mon, 2014-04-21 06:47
Hot topic Run AbinitioRelax (rosetta 3.3) on cluster
by grisha » Mon, 2011-12-12 14:20
18
18,133 by grisha
Mon, 2014-04-21 06:47
Hot topic Syntax for relax.linuxgccrelease
by lanselibai » Wed, 2014-09-24 04:34
18
24,923 by lanselibai
Tue, 2014-12-02 09:46
Hot topic FloppyTail bugs for N-terminal tails
by Dave C » Thu, 2012-03-01 13:06
18
16,271 by bbarryabc
Mon, 2014-04-21 06:47
Hot topic usage of score3
by Run » Sat, 2013-09-28 02:06
16
17,410 by jadolfbr
Mon, 2014-04-21 06:48
Hot topic A problem with RosettaLigand
by Rosettasz » Fri, 2013-07-19 16:09
16
19,689 by Rosettasz
Mon, 2014-04-21 06:48
Hot topic CoupledMoves not altering backbone coordinates?
by amorin » Wed, 2021-01-20 11:38
15
7,050 by amorin
Sat, 2021-02-27 20:29
Hot topic membrane scoring function performance
by tevang » Wed, 2013-03-20 08:40
15
15,493 by smlewis
Mon, 2014-04-21 06:47
Hot topic Errors in Getting Erraser to run
by belousoff » Thu, 2017-06-01 16:13
15
13,197 by belousoff
Mon, 2017-06-26 16:46
Hot topic Folppy Tail and Constraints
by sfulad2 » Fri, 2017-05-12 12:23
15
10,509 by smlewis
Fri, 2017-09-08 09:16
Normal topic About loophash and batchrelax.
by Run » Mon, 2013-07-22 23:54
14
13,610 by Run
Mon, 2014-04-21 06:48
Normal topic Fastsaxs
by Pernille » Mon, 2013-07-22 07:29
14
38,111 by rmoretti
Mon, 2021-06-14 12:56
Normal topic loop_length_changing
by lanselibai » Tue, 2014-10-14 04:10
14
14,137 by lanselibai
Fri, 2014-11-07 02:06
Normal topic Problems when running Rosetta VIP with cofactors
by Basantab » Fri, 2013-04-26 13:31
14
15,331 by Basantab
Mon, 2014-04-21 06:47
Normal topic [SOLVED] swamped memory
by fred » Fri, 2011-09-16 08:19
13
12,618 by fred
Mon, 2014-04-21 06:47
Normal topic Camelid antibody (VHH) modelling
by Ayoub Ksouri » Tue, 2017-04-04 22:52
13
10,894 by Ayoub Ksouri
Wed, 2017-04-19 15:16
Normal topic ddg_monomer mutations list: How to specify chain ID?
by cossio » Tue, 2014-12-09 14:26
13
17,230 by rmoretti
Thu, 2016-04-28 16:43
Normal topic Segmentation fault (core dumped) in rosetta_scripts.default.linuxgccrelease after blueprint file reading
by Corvin » Tue, 2020-06-30 00:36
12
9,175 by Corvin
Tue, 2020-11-10 01:22
Normal topic AbinitioRelax usage (3.4)
by atruong » Fri, 2012-10-12 13:38
12
11,462 by atruong
Mon, 2014-04-21 06:47
Normal topic fragment picker does not follow dihedral constraints
by attesor » Tue, 2016-05-24 23:22
12
11,156 by smlewis
Wed, 2016-08-17 07:56
Normal topic Scoring residue vs. organic ligand
by almeida » Tue, 2014-04-08 12:18
12
14,018 by rmoretti
Thu, 2014-04-24 14:43
Normal topic Surface Docking Application Crash
by dkozuch » Sat, 2017-09-02 18:32
12
9,002 by Anpu
Tue, 2018-09-25 19:06
Normal topic the extracted pdb file
by benniu2004 » Fri, 2013-01-04 17:55
12
14,151 by benniu2004
Mon, 2014-04-21 06:47
Normal topic "score vs RMSD plots" & "cluster models"
by lanselibai » Thu, 2014-09-25 06:51
12
25,052 by lanselibai
Wed, 2014-10-15 01:54
Normal topic Where is the RosettaHoles2 executable?
by lah435 » Mon, 2012-06-04 15:15
11
8,980 by smlewis
Mon, 2014-04-21 06:47
Normal topic in silico affinity maturation design
by jarod » Mon, 2013-05-20 02:07
11
12,735 by jarod
Mon, 2014-04-21 06:47
Normal topic No output pdb files after docking protein and DNA/RNA
by yzq » Thu, 2012-10-25 08:23
11
12,366 by rmoretti
Fri, 2016-06-17 10:22
Normal topic fragment_picker.mpi.linuxgccrelease can't find : libsqlite3.so
by starone » Mon, 2016-06-20 19:22
11
13,851 by starone
Fri, 2016-06-24 18:29
Normal topic ddg_monomer problem
by deltag » Wed, 2012-04-04 07:53
11
12,679 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta-Holes Scoring Function
by kroberts » Fri, 2011-05-13 14:05
11
15,117 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Abinitio error: ERROR: Value of inactive option accessed: -in:file:frag9
by rlwoltz » Tue, 2012-09-18 14:04
11
16,616 by RAGHURAMAN
Fri, 2014-08-08 02:19
Normal topic How to use -cst_fa_file and -relax:constrain_relax_to_native_coords at the same time
by Anatol » Thu, 2012-11-29 14:12
11
10,825 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error while running Enzyme Design
by saxen » Fri, 2011-10-21 15:46
11
11,296 by akpole
Mon, 2014-04-21 06:47
Normal topic -kill_hairpin error
by jadolfbr » Wed, 2011-10-05 18:53
11
17,743 by rmoretti
Mon, 2015-09-28 15:00
Normal topic Should FastRelax be commented out in Calculate_protein_protein_ddg demo?
by cossio » Mon, 2016-10-31 12:01
11
9,775 by cossio
Mon, 2016-11-21 07:56
Normal topic XML validation failing
by mb0261 » Fri, 2023-04-14 14:53
11
2,418 by mb0261
Mon, 2023-04-17 17:38
Normal topic how to repacking loop while freezing other residues?
by jfhuang » Wed, 2012-07-25 06:59
10
9,007 by jfhuang
Mon, 2014-04-21 06:47
Normal topic A problem with "molfile_to_params.py"
by Rosettasz » Mon, 2013-08-19 19:35
10
11,442 by egecav
Mon, 2021-01-18 05:41
Normal topic RosettaDNA error
by deltag » Fri, 2012-12-07 06:09
10
10,023 by deltag
Mon, 2014-04-21 06:47
Normal topic Don't know how to extract scores from a RNA de novo silent file.
by Basantab » Wed, 2011-11-23 17:27
10
10,228 by smlewis
Mon, 2014-04-21 06:47
Normal topic Questions for "modeling_instructions.pdf" in "Homology or Loop Modelling"
by lanselibai » Sun, 2014-09-21 09:02
10
11,060 by lanselibai
Tue, 2014-10-07 02:58
Normal topic fixing disulfides in homolgy modeling
by pdbb » Wed, 2013-02-13 11:43
10
12,224 by kamau
Mon, 2014-09-22 09:39
Normal topic SEWING and motif file generation
by rbjacob » Thu, 2018-07-12 07:28
10
7,121 by zhangying1990
Tue, 2019-06-04 18:04
Normal topic std::bad_alloc error after changing .xml script?
by chrisHKL » Wed, 2020-03-04 11:44
10
5,830 by jadolfbr
Thu, 2020-03-05 07:02
Normal topic fix the left part doesn't work
by albumns » Wed, 2012-11-07 00:02
9
7,252 by albumns
Mon, 2014-04-21 06:47
Normal topic RosettaDock - Constraints File
by edpryor » Wed, 2012-09-19 06:23
9
12,926 by joeg
Mon, 2014-04-21 06:47
Normal topic Runnig Abinitio & score app
by Gaurav_kumar » Wed, 2011-11-23 20:45
9
11,882 by rmoretti
Mon, 2014-04-21 06:47
Normal topic problems in InterfaceAnalyzer analysis
by chenchaozhao » Fri, 2011-12-02 23:36
9
8,912 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to fix the ATP HETATM by using movemap or constraint file?
by ziqi1234 » Mon, 2017-11-20 06:43
9
7,254 by ziqi1234
Wed, 2017-11-22 06:21
Normal topic Including waters in RosettaCM
by ajkal » Thu, 2017-04-27 11:59
9
7,923 by rpavlov
Tue, 2017-06-06 11:45
Normal topic Symmetry Docking and Clustering with Ligands
by skovacs » Wed, 2012-03-07 16:46
9
11,902 by Anonymous
Mon, 2014-04-21 06:47
Normal topic ORBITAL records in self generated .params (ligands)
by ast » Thu, 2014-03-06 07:22
9
9,384 by ast
Thu, 2014-03-13 07:17
Normal topic ab initio membrane error (frag9 file...)
by almeida » Mon, 2012-07-30 08:53
9
9,763 by rmoretti
Tue, 2014-08-12 08:15
Normal topic Ab-initio peptide-protein docking
by suhail » Sun, 2013-06-23 16:20
9
12,219 by rmoretti
Fri, 2016-04-29 08:57
Normal topic cryptic error message from remodel in rosetta_scripts
by petrikigor » Mon, 2012-12-03 15:13
9
8,937 by petrikigor
Mon, 2014-04-21 06:47
Normal topic RAbD with N-term,Proline-like ncaa returns segmentation fault during CCDEndsGraftMover
by CordycepsLin » Sun, 2022-02-06 19:09
9
3,844 by CordycepsLin
Wed, 2022-02-09 19:39
Normal topic loop re-modeling std::out_of_range
by rlwoltz » Tue, 2013-03-12 18:11
9
9,086 by smlewis
Mon, 2014-04-21 06:47
Normal topic errors about RIFdocking
by sia » Sun, 2022-07-24 20:45
8
3,018 by Minghui-Du
Sun, 2024-03-24 21:12
Normal topic Fold tree C->N: RosettaScripts
by aroop » Wed, 2013-02-13 10:31
8
8,308 by smlewis
Mon, 2014-04-21 06:47
Normal topic to create the template pdb file
by benniu2004 » Sat, 2012-12-29 23:04
8
8,841 by benniu2004
Mon, 2014-04-21 06:47
Normal topic [SOLVED]core.io.silent: [ WARNING ] ...
by fred » Wed, 2011-10-05 07:38
8
8,246 by fred
Mon, 2014-04-21 06:47
Normal topic Adding bridged water interaction in constraint file
by purvi24 » Thu, 2019-02-28 07:01
8
5,469 by purvi24
Mon, 2019-03-11 06:43
Normal topic Converting -patch replonly residues to original sequence
by subha » Mon, 2017-06-26 13:39
8
6,326 by smlewis
Tue, 2017-07-04 15:42
Normal topic demo of molecular replacement with rosetta (mr_rosetta)
by wenchangyu2008 » Sun, 2011-03-20 05:23
8
11,416 by astrofunk12
Mon, 2014-04-21 06:47
Normal topic Question about running scallo
by danbo » Mon, 2021-11-29 23:25
8
3,733 by danbo
Wed, 2021-12-22 23:51
Normal topic Multistate design on Rosetta - no generations produced
by tong » Wed, 2018-06-13 00:36
8
5,662 by smlewis
Thu, 2018-06-14 10:26
Normal topic InterfaceAnalyzer:“too many tries in fill_missing_atoms!”
by mxp » Tue, 2019-08-06 00:41
8
7,104 by mxp
Mon, 2019-08-12 18:42
Normal topic Syntax to build a silent file
by lanselibai » Fri, 2014-09-26 09:13
8
10,160 by lanselibai
Tue, 2014-09-30 03:45
Normal topic Problems with Ligand Docking
by saxen » Fri, 2011-08-19 00:19
8
9,027 by glemmon
Mon, 2014-04-21 06:47
Normal topic fixbb design using damped LJ
by Anonymous » Fri, 2012-08-17 03:51
8
8,106 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Noncanonical amino acids
by wsgosal » Tue, 2014-03-18 05:29
8
7,736 by e3lm
Thu, 2022-05-26 12:51
Normal topic Why do non proten ligands get a very high score in kinematic loop modeling/ in general?
by a_s_a » Wed, 2011-06-15 00:03
8
8,160 by a_s_a
Mon, 2014-04-21 06:47
Normal topic SnugDock - What protocol should I use?
by dfcoelho » Tue, 2018-11-27 07:32
8
7,689 by dfcoelho
Wed, 2018-11-28 08:07
Normal topic ddg_monomer consumes massive RAM
by cossio » Fri, 2018-03-09 17:02
7
6,515 by rmoretti
Mon, 2018-03-19 12:12
Normal topic Rosetta scoring
by Dimitrov » Thu, 2012-09-20 01:54
7
10,117 by attesor
Mon, 2014-04-21 06:47
Normal topic segmentation fault after core.kinematics.FoldTree in homology modeling
by pdbb » Mon, 2012-10-08 14:27
7
7,672 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Write one's own constraint type
by djpittdj » Thu, 2012-11-08 12:29
7
6,824 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaRemodel can not work now?
by myputer » Tue, 2013-08-13 16:56
7
7,702 by rmoretti
Mon, 2014-04-21 06:48
Normal topic About scorefunction.
by Run » Mon, 2013-09-09 23:08
7
7,797 by rmoretti
Mon, 2014-04-21 06:48
Normal topic protein structure prediction using relax -- high-powered jobs
by rfieldhouse » Mon, 2011-05-30 18:29
7
7,881 by dimaio
Mon, 2014-04-21 06:47
Normal topic variable length fragments for Ab initio
by attesor » Wed, 2015-07-01 06:13
7
7,209 by rmoretti
Tue, 2015-08-18 16:47
Normal topic Problem about energy score
by tfliu » Tue, 2013-11-05 02:09
7
7,898 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic How can I prevent coordinates shift when using "loopmodel.linuxgccrelease"?
by lanselibai » Tue, 2014-11-04 14:56
7
7,929 by lanselibai
Wed, 2014-11-12 11:17
Normal topic ERROR: Unable to fill in missing atoms.
by mieczyslaw » Tue, 2020-10-20 09:43
7
6,633 by rayyoung
Thu, 2021-11-18 10:13
Normal topic SnugDocking a VHH:antigen complex possible?
by David Weis » Thu, 2017-02-16 05:57
7
6,227 by rmoretti
Thu, 2017-07-06 13:00
Normal topic Can rosetta generate a centroid model based on the rna sequence?
by yels » Fri, 2021-03-26 04:06
7
3,284 by yels
Wed, 2021-03-31 18:31
Normal topic H3 modeling takes 10 days more?
by jessye » Fri, 2017-10-27 03:11
7
5,500 by jessye
Fri, 2017-11-03 20:15
Normal topic running in MPI mode and multiple scores per output PDB file?
by dantimatter » Wed, 2019-10-30 09:42
7
5,325 by dantimatter
Wed, 2019-11-06 09:51
Normal topic Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring
by brspurri » Wed, 2017-03-29 13:19
7
6,615 by matteoferla
Mon, 2021-07-19 06:13

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