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Rosetta 3 - Applications
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FAQ by admin » Mon, 2010-08-30 04:18 |
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17,323 |
by admin Fri, 2015-09-04 16:17 |
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multiple template homolgy modelling (Page: 1, 2)
by pdbb » Tue, 2012-10-30 08:12 |
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59,818 |
by rmoretti Fri, 2018-05-18 12:40 |
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a trouble during floppytail modeling by chenchaozhao » Tue, 2011-03-15 03:59 |
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38,470 |
by smlewis Thu, 2017-06-01 10:02 |
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ddG calculation by malkeet.singh » Sun, 2017-06-25 07:53 |
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25,530 |
by malkeet.singh Tue, 2017-11-14 04:33 |
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some application troubles when using resfile flag by chenchaozhao » Tue, 2011-04-05 00:05 |
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26,998 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta Scripts: Loop Modeling w. Selective Repacking by aroop » Mon, 2013-01-07 08:45 |
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19,755 |
by aroop Mon, 2014-04-21 06:47 |
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Garbled Ligands from docking_protocol by skovacs » Tue, 2011-12-20 07:55 |
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19,501 |
by skovacs Mon, 2014-04-21 06:47 |
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rosettaCM not recognizing Mn atom by banshee » Mon, 2016-09-12 23:33 |
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16,923 |
by rmoretti Wed, 2018-11-21 15:45 |
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Ab initio with multiple metal ions by cheyuk » Sun, 2013-12-29 17:58 |
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20,591 |
by masterofpuppets Tue, 2015-01-27 04:26 |
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homology modeling with end extension by fred » Mon, 2012-10-08 14:19 |
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17,877 |
by xpzhang Mon, 2014-04-21 06:47 |
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Error with recognizing rotamer library atoms by oerbilgin » Fri, 2011-11-04 15:23 |
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29,119 |
by oerbilgin Mon, 2014-04-21 06:47 |
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Run AbinitioRelax (rosetta 3.3) on cluster by grisha » Mon, 2011-12-12 14:20 |
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17,965 |
by grisha Mon, 2014-04-21 06:47 |
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Syntax for relax.linuxgccrelease by lanselibai » Wed, 2014-09-24 04:34 |
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24,694 |
by lanselibai Tue, 2014-12-02 09:46 |
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FloppyTail bugs for N-terminal tails by Dave C » Thu, 2012-03-01 13:06 |
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16,105 |
by bbarryabc Mon, 2014-04-21 06:47 |
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Fixbb Multiple Resfiles by protos_heis » Mon, 2012-10-15 10:34 |
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15,440 |
by protos_heis Mon, 2014-04-21 06:47 |
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usage of score3 by Run » Sat, 2013-09-28 02:06 |
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17,246 |
by jadolfbr Mon, 2014-04-21 06:48 |
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A problem with RosettaLigand by Rosettasz » Fri, 2013-07-19 16:09 |
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19,466 |
by Rosettasz Mon, 2014-04-21 06:48 |
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Folppy Tail and Constraints by sfulad2 » Fri, 2017-05-12 12:23 |
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10,365 |
by smlewis Fri, 2017-09-08 09:16 |
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CoupledMoves not altering backbone coordinates? by amorin » Wed, 2021-01-20 11:38 |
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6,902 |
by amorin Sat, 2021-02-27 20:29 |
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membrane scoring function performance by tevang » Wed, 2013-03-20 08:40 |
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15,295 |
by smlewis Mon, 2014-04-21 06:47 |
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Errors in Getting Erraser to run by belousoff » Thu, 2017-06-01 16:13 |
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12,877 |
by belousoff Mon, 2017-06-26 16:46 |
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Problems when running Rosetta VIP with cofactors by Basantab » Fri, 2013-04-26 13:31 |
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15,176 |
by Basantab Mon, 2014-04-21 06:47 |
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About loophash and batchrelax. by Run » Mon, 2013-07-22 23:54 |
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13,442 |
by Run Mon, 2014-04-21 06:48 |
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Fastsaxs by Pernille » Mon, 2013-07-22 07:29 |
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37,961 |
by rmoretti Mon, 2021-06-14 12:56 |
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loop_length_changing by lanselibai » Tue, 2014-10-14 04:10 |
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14,004 |
by lanselibai Fri, 2014-11-07 02:06 |
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Camelid antibody (VHH) modelling by Ayoub Ksouri » Tue, 2017-04-04 22:52 |
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10,752 |
by Ayoub Ksouri Wed, 2017-04-19 15:16 |
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[SOLVED] swamped memory by fred » Fri, 2011-09-16 08:19 |
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12,454 |
by fred Mon, 2014-04-21 06:47 |
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ddg_monomer mutations list: How to specify chain ID? by cossio » Tue, 2014-12-09 14:26 |
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17,072 |
by rmoretti Thu, 2016-04-28 16:43 |
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Surface Docking Application Crash by dkozuch » Sat, 2017-09-02 18:32 |
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8,889 |
by Anpu Tue, 2018-09-25 19:06 |
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the extracted pdb file by benniu2004 » Fri, 2013-01-04 17:55 |
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14,031 |
by benniu2004 Mon, 2014-04-21 06:47 |
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"score vs RMSD plots" & "cluster models" by lanselibai » Thu, 2014-09-25 06:51 |
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24,832 |
by lanselibai Wed, 2014-10-15 01:54 |
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Segmentation fault (core dumped) in rosetta_scripts.default.linuxgccrelease after blueprint file reading by Corvin » Tue, 2020-06-30 00:36 |
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8,984 |
by Corvin Tue, 2020-11-10 01:22 |
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AbinitioRelax usage (3.4) by atruong » Fri, 2012-10-12 13:38 |
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11,346 |
by atruong Mon, 2014-04-21 06:47 |
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fragment picker does not follow dihedral constraints by attesor » Tue, 2016-05-24 23:22 |
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11,036 |
by smlewis Wed, 2016-08-17 07:56 |
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Scoring residue vs. organic ligand by almeida » Tue, 2014-04-08 12:18 |
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13,907 |
by rmoretti Thu, 2014-04-24 14:43 |
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Rosetta-Holes Scoring Function by kroberts » Fri, 2011-05-13 14:05 |
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14,964 |
by rmoretti Mon, 2014-04-21 06:47 |
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Where is the RosettaHoles2 executable? by lah435 » Mon, 2012-06-04 15:15 |
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8,891 |
by smlewis Mon, 2014-04-21 06:47 |
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Should FastRelax be commented out in Calculate_protein_protein_ddg demo? by cossio » Mon, 2016-10-31 12:01 |
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9,646 |
by cossio Mon, 2016-11-21 07:56 |
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XML validation failing by mb0261 » Fri, 2023-04-14 14:53 |
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2,250 |
by mb0261 Mon, 2023-04-17 17:38 |
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in silico affinity maturation design by jarod » Mon, 2013-05-20 02:07 |
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12,624 |
by jarod Mon, 2014-04-21 06:47 |
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No output pdb files after docking protein and DNA/RNA by yzq » Thu, 2012-10-25 08:23 |
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12,249 |
by rmoretti Fri, 2016-06-17 10:22 |
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Error while running Enzyme Design by saxen » Fri, 2011-10-21 15:46 |
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11,161 |
by akpole Mon, 2014-04-21 06:47 |
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fragment_picker.mpi.linuxgccrelease can't find : libsqlite3.so by starone » Mon, 2016-06-20 19:22 |
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13,694 |
by starone Fri, 2016-06-24 18:29 |
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ddg_monomer problem by deltag » Wed, 2012-04-04 07:53 |
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12,543 |
by smlewis Mon, 2014-04-21 06:47 |
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-kill_hairpin error by jadolfbr » Wed, 2011-10-05 18:53 |
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17,564 |
by rmoretti Mon, 2015-09-28 15:00 |
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Abinitio error: ERROR: Value of inactive option accessed: -in:file:frag9 by rlwoltz » Tue, 2012-09-18 14:04 |
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16,442 |
by RAGHURAMAN Fri, 2014-08-08 02:19 |
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How to use -cst_fa_file and -relax:constrain_relax_to_native_coords at the same time by Anatol » Thu, 2012-11-29 14:12 |
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10,691 |
by smlewis Mon, 2014-04-21 06:47 |
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fixing disulfides in homolgy modeling by pdbb » Wed, 2013-02-13 11:43 |
10 |
12,121 |
by kamau Mon, 2014-09-22 09:39 |
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SEWING and motif file generation by rbjacob » Thu, 2018-07-12 07:28 |
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7,011 |
by zhangying1990 Tue, 2019-06-04 18:04 |
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std::bad_alloc error after changing .xml script? by chrisHKL » Wed, 2020-03-04 11:44 |
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5,706 |
by jadolfbr Thu, 2020-03-05 07:02 |
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Don't know how to extract scores from a RNA de novo silent file. by Basantab » Wed, 2011-11-23 17:27 |
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10,124 |
by smlewis Mon, 2014-04-21 06:47 |
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how to repacking loop while freezing other residues? by jfhuang » Wed, 2012-07-25 06:59 |
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8,910 |
by jfhuang Mon, 2014-04-21 06:47 |
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A problem with "molfile_to_params.py" by Rosettasz » Mon, 2013-08-19 19:35 |
10 |
11,322 |
by egecav Mon, 2021-01-18 05:41 |
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RosettaDNA error by deltag » Fri, 2012-12-07 06:09 |
10 |
9,921 |
by deltag Mon, 2014-04-21 06:47 |
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Questions for "modeling_instructions.pdf" in "Homology or Loop Modelling" by lanselibai » Sun, 2014-09-21 09:02 |
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10,952 |
by lanselibai Tue, 2014-10-07 02:58 |
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Ab-initio peptide-protein docking by suhail » Sun, 2013-06-23 16:20 |
9 |
12,134 |
by rmoretti Fri, 2016-04-29 08:57 |
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cryptic error message from remodel in rosetta_scripts by petrikigor » Mon, 2012-12-03 15:13 |
9 |
8,815 |
by petrikigor Mon, 2014-04-21 06:47 |
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RAbD with N-term，Proline-like ncaa returns segmentation fault during CCDEndsGraftMover by CordycepsLin » Sun, 2022-02-06 19:09 |
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3,721 |
by CordycepsLin Wed, 2022-02-09 19:39 |
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problems in InterfaceAnalyzer analysis by chenchaozhao » Fri, 2011-12-02 23:36 |
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8,798 |
by smlewis Mon, 2014-04-21 06:47 |
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loop re-modeling std::out_of_range by rlwoltz » Tue, 2013-03-12 18:11 |
9 |
9,022 |
by smlewis Mon, 2014-04-21 06:47 |
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fix the left part doesn't work by albumns » Wed, 2012-11-07 00:02 |
9 |
7,160 |
by albumns Mon, 2014-04-21 06:47 |
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RosettaDock - Constraints File by edpryor » Wed, 2012-09-19 06:23 |
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12,810 |
by joeg Mon, 2014-04-21 06:47 |
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Symmetry Docking and Clustering with Ligands by skovacs » Wed, 2012-03-07 16:46 |
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11,826 |
by Anonymous Mon, 2014-04-21 06:47 |
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how to fix the ATP HETATM by using movemap or constraint file? by ziqi1234 » Mon, 2017-11-20 06:43 |
9 |
7,105 |
by ziqi1234 Wed, 2017-11-22 06:21 |
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Including waters in RosettaCM by ajkal » Thu, 2017-04-27 11:59 |
9 |
7,840 |
by rpavlov Tue, 2017-06-06 11:45 |
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ORBITAL records in self generated .params (ligands) by ast » Thu, 2014-03-06 07:22 |
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9,312 |
by ast Thu, 2014-03-13 07:17 |
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ab initio membrane error (frag9 file...) by almeida » Mon, 2012-07-30 08:53 |
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9,660 |
by rmoretti Tue, 2014-08-12 08:15 |
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Runnig Abinitio & score app by Gaurav_kumar » Wed, 2011-11-23 20:45 |
9 |
11,788 |
by rmoretti Mon, 2014-04-21 06:47 |
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Noncanonical amino acids by wsgosal » Tue, 2014-03-18 05:29 |
8 |
7,654 |
by e3lm Thu, 2022-05-26 12:51 |
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SnugDock - What protocol should I use? by dfcoelho » Tue, 2018-11-27 07:32 |
8 |
7,537 |
by dfcoelho Wed, 2018-11-28 08:07 |
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Problems with Ligand Docking by saxen » Fri, 2011-08-19 00:19 |
8 |
8,932 |
by glemmon Mon, 2014-04-21 06:47 |
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errors about RIFdocking by sia » Sun, 2022-07-24 20:45 |
8 |
2,838 |
by Minghui-Du Sun, 2024-03-24 21:12 |
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Fold tree C->N: RosettaScripts by aroop » Wed, 2013-02-13 10:31 |
8 |
8,229 |
by smlewis Mon, 2014-04-21 06:47 |
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to create the template pdb file by benniu2004 » Sat, 2012-12-29 23:04 |
8 |
8,759 |
by benniu2004 Mon, 2014-04-21 06:47 |
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Adding bridged water interaction in constraint file by purvi24 » Thu, 2019-02-28 07:01 |
8 |
5,388 |
by purvi24 Mon, 2019-03-11 06:43 |
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Why do non proten ligands get a very high score in kinematic loop modeling/ in general? by a_s_a » Wed, 2011-06-15 00:03 |
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8,039 |
by a_s_a Mon, 2014-04-21 06:47 |
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Converting -patch replonly residues to original sequence by subha » Mon, 2017-06-26 13:39 |
8 |
6,263 |
by smlewis Tue, 2017-07-04 15:42 |
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Question about running scallo by danbo » Mon, 2021-11-29 23:25 |
8 |
3,633 |
by danbo Wed, 2021-12-22 23:51 |
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[SOLVED]core.io.silent: [ WARNING ] ... by fred » Wed, 2011-10-05 07:38 |
8 |
8,156 |
by fred Mon, 2014-04-21 06:47 |
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Multistate design on Rosetta - no generations produced by tong » Wed, 2018-06-13 00:36 |
8 |
5,562 |
by smlewis Thu, 2018-06-14 10:26 |
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InterfaceAnalyzer：“too many tries in fill_missing_atoms!” by mxp » Tue, 2019-08-06 00:41 |
8 |
6,950 |
by mxp Mon, 2019-08-12 18:42 |
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fixbb design using damped LJ by Anonymous » Fri, 2012-08-17 03:51 |
8 |
8,016 |
by Anonymous Mon, 2014-04-21 06:47 |
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Syntax to build a silent file by lanselibai » Fri, 2014-09-26 09:13 |
8 |
10,067 |
by lanselibai Tue, 2014-09-30 03:45 |
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demo of molecular replacement with rosetta (mr_rosetta) by wenchangyu2008 » Sun, 2011-03-20 05:23 |
8 |
11,312 |
by astrofunk12 Mon, 2014-04-21 06:47 |
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How to write down a connection between ligand's atom and metal ion from enzyme? by Corvin » Mon, 2021-02-15 06:54 |
7 |
3,648 |
by aloshbau Mon, 2021-03-01 20:06 |
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suppress pdb output from backrub by attesor » Mon, 2014-10-27 11:16 |
7 |
7,288 |
by rmoretti Mon, 2014-11-03 15:47 |
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If "clustering.py" can be used for PDBs contain two chains? by lanselibai » Wed, 2014-11-05 06:05 |
7 |
7,252 |
by lanselibai Tue, 2014-12-02 09:43 |
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Fragment files for membrane_abinitio application by sumukh21 » Sun, 2011-02-13 20:34 |
7 |
6,999 |
by yarovoy Mon, 2014-04-21 06:47 |
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Ensemble Docking in Rosetta3.5? by protos_heis » Fri, 2015-05-22 06:42 |
7 |
8,659 |
by protos_heis Mon, 2015-06-08 07:00 |
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Rosetta scoring by Dimitrov » Thu, 2012-09-20 01:54 |
7 |
9,998 |
by attesor Mon, 2014-04-21 06:47 |
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modeling phosphorylated residue by rosetter » Fri, 2011-03-18 08:13 |
7 |
8,665 |
by smlewis Mon, 2014-04-21 06:47 |
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"ddg_monomer.linuxgccrelease" by following "High Resolution Protocol" by lanselibai » Wed, 2014-10-01 09:54 |
7 |
10,929 |
by lanselibai Sat, 2015-01-03 08:18 |
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segmentation fault after core.kinematics.FoldTree in homology modeling by pdbb » Mon, 2012-10-08 14:27 |
7 |
7,613 |
by rmoretti Mon, 2014-04-21 06:47 |
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ddg_monomer consumes massive RAM by cossio » Fri, 2018-03-09 17:02 |
7 |
6,424 |
by rmoretti Mon, 2018-03-19 12:12 |
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Write one's own constraint type by djpittdj » Thu, 2012-11-08 12:29 |
7 |
6,748 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaRemodel can not work now? by myputer » Tue, 2013-08-13 16:56 |
7 |
7,645 |
by rmoretti Mon, 2014-04-21 06:48 |
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About scorefunction. by Run » Mon, 2013-09-09 23:08 |
7 |
7,708 |
by rmoretti Mon, 2014-04-21 06:48 |
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variable length fragments for Ab initio by attesor » Wed, 2015-07-01 06:13 |
7 |
7,151 |
by rmoretti Tue, 2015-08-18 16:47 |
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Problem about energy score by tfliu » Tue, 2013-11-05 02:09 |
7 |
7,823 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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ERROR: Unable to fill in missing atoms. by mieczyslaw » Tue, 2020-10-20 09:43 |
7 |
6,484 |
by rayyoung Thu, 2021-11-18 10:13 |
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