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Rosetta 3 - Applications

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
0
17,566 by admin
Fri, 2015-09-04 16:17
Normal topic RosettaLigand - strange score behavior
by Gerdes » Mon, 2014-02-03 02:24
6
7,136 by Gerdes
Fri, 2014-02-07 06:48
Normal topic rosetta_2013wk52: make_fragments.pl failed
by fred » Thu, 2014-01-30 12:41
6
8,826 by rmoretti
Fri, 2014-02-07 08:01
Normal topic RNA structure prediction
by emaghdam » Sat, 2014-02-08 01:30
4
6,027 by rmoretti
Mon, 2014-02-24 09:12
Normal topic ddg monomer vs pmut scan
by dave » Tue, 2014-03-04 10:18
3
4,612 by smlewis
Fri, 2014-03-07 13:02
Normal topic InterfaceAnalyzer problem
by almeida » Mon, 2014-03-03 14:56
3
5,099 by smlewis
Fri, 2014-03-07 14:09
Normal topic ORBITAL records in self generated .params (ligands)
by ast » Thu, 2014-03-06 07:22
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9,458 by ast
Thu, 2014-03-13 07:17
Normal topic Options for Enzdes RosettaScripts
by joeg » Wed, 2014-03-12 09:28
1
3,061 by rmoretti
Thu, 2014-03-13 08:04
Normal topic cluster.mpi.linuxgccrelease failed
by fred » Mon, 2014-02-24 12:11
3
8,218 by fred
Thu, 2014-03-27 11:29
Normal topic score_jd2.mpi.linuxgccrelease failed
by fred » Wed, 2014-03-26 13:54
2
5,587 by fred
Tue, 2014-04-01 08:24
Normal topic matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302
by siciliu » Fri, 2014-03-21 17:51
5
6,496 by siciliu
Thu, 2014-04-10 09:50
Normal topic regarding extracting silent file - renamed tag
by shrutikhare » Thu, 2014-04-17 01:19
2
2,850 by shrutikhare
Fri, 2014-04-18 23:11
Normal topic How to estimate the effect of a mutation on the binding energy?
by ltrabuco » Tue, 2011-02-15 08:02
4
5,661 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Fragment files for membrane_abinitio application
by sumukh21 » Sun, 2011-02-13 20:34
7
7,153 by yarovoy
Mon, 2014-04-21 06:47
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Thu, 2011-02-17 12:29
3
4,946 by fukamitka
Mon, 2014-04-21 06:47
Normal topic Fragment files for membrane_abinitio application
by sumukh21 » Tue, 2011-02-15 17:23
2
3,610 by sumukh21
Mon, 2014-04-21 06:47
Normal topic demo of molecular replacement with rosetta (mr_rosetta)
by wenchangyu2008 » Sun, 2011-03-20 05:23
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11,492 by astrofunk12
Mon, 2014-04-21 06:47
Normal topic example scripts for comparative modeling
by fglaser » Sun, 2011-02-27 21:50
2
3,723 by maxebert
Mon, 2014-04-21 06:47
Normal topic Filtering while clustering
by David Hoover » Wed, 2011-03-30 07:03
1
2,777 by smlewis
Mon, 2014-04-21 06:47
Normal topic modeling phosphorylated residue
by rosetter » Fri, 2011-03-18 08:13
7
8,836 by smlewis
Mon, 2014-04-21 06:47
Normal topic error mesages from RosettaDock
by AlanZhao » Mon, 2011-03-21 11:42
1
2,686 by smlewis
Mon, 2014-04-21 06:47
Normal topic the meaning of total_score in docking
by libai2098 » Mon, 2011-03-21 05:46
2
4,702 by libai2098
Mon, 2014-04-21 06:47
Normal topic -score_app:linmin flag not working
by fglaser » Tue, 2011-03-01 06:04
5
5,778 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaAntibody
by mpendleton » Mon, 2011-04-04 10:27
3
5,140 by jianqing
Mon, 2014-04-21 06:47
Hot topic some application troubles when using resfile flag
by chenchaozhao » Tue, 2011-04-05 00:05
24
27,573 by smlewis
Mon, 2014-04-21 06:47
Normal topic problem when exact pdb from silent file
by wenchangyu2008 » Mon, 2011-04-18 00:42
1
3,269 by wenchangyu2008
Mon, 2014-04-21 06:47
Normal topic placing a constraint during structure prediction
by cbala » Thu, 2011-04-07 08:54
1
3,285 by ic3reyes
Mon, 2014-04-21 06:47
Normal topic Destination of score.fsc file
by anirbanzz » Wed, 2011-04-20 23:30
1
2,925 by smlewis
Mon, 2014-04-21 06:47
Normal topic Dimer of dimers
by smiruthi » Fri, 2011-04-15 10:41
4
7,271 by IAndre
Mon, 2014-04-21 06:47
Normal topic membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template?
by fglaser » Thu, 2011-04-07 07:57
0
2,322 by fglaser
Mon, 2014-04-21 06:47
Normal topic flexpep docking problem
by michael_luntan » Mon, 2011-04-18 17:15
5
5,889 by michael_luntan
Mon, 2014-04-21 06:47
Normal topic rna structure prediction
by cbala » Thu, 2011-04-14 07:42
5
6,067 by mkoohim
Mon, 2014-04-21 06:47
Normal topic protein-protein docking
by cbala » Mon, 2011-04-18 09:15
1
2,716 by smlewis
Mon, 2014-04-21 06:47
Normal topic Help with enzyme design
by lzx32 » Fri, 2011-04-08 22:29
6
6,778 by lzx32
Mon, 2014-04-21 06:47
Normal topic flexpep docking, select the decoy to do the further docking, questions
by michael_luntan » Fri, 2011-04-22 04:43
2
3,628 by michael_luntan
Mon, 2014-04-21 06:47
Normal topic Problem readin .ccp4 map file
by jljbbc » Tue, 2011-05-03 11:29
4
5,947 by jljbbc
Mon, 2014-04-21 06:47
Normal topic Rosetta-Holes Scoring Function
by kroberts » Fri, 2011-05-13 14:05
11
15,259 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Problem with symmetric docking
by saxen » Fri, 2011-04-29 15:15
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4,263 by smlewis
Mon, 2014-04-21 06:47
Normal topic kinematic loop modeling multiple input: possible?
by a_s_a » Thu, 2011-05-12 09:33
2
3,436 by a_s_a
Mon, 2014-04-21 06:47
Normal topic Using Rosetta Docking for nucleic acids
by Adrien Guilhot » Thu, 2011-04-28 06:16
3
5,275 by Adrien Guilhot
Mon, 2014-04-21 06:47
Normal topic ab inito memberane(error in alignblast.pl)
by kingljy » Tue, 2011-05-03 23:41
6
7,318 by karthishanmugam
Mon, 2014-04-21 06:47
Normal topic Floppytail modelling
by felipet » Fri, 2011-06-24 09:23
2
3,873 by felipet
Mon, 2014-04-21 06:47
Normal topic cluster,how to get the statistic data
by MajorID » Wed, 2011-06-08 09:20
0
2,025 by MajorID
Mon, 2014-04-21 06:47
Normal topic Ligand docking and protein design of an internal pocket in a protein with a cofactor
by oerbilgin » Mon, 2011-06-20 13:55
2
4,956 by frichter
Mon, 2014-04-21 06:47
Normal topic FlexPepDocking with GDP-bound protein
by LI » Sun, 2011-06-12 20:02
3
4,887 by rmoretti
Mon, 2014-04-21 06:47
Normal topic rosetta protein protein docking start up
by vk » Fri, 2011-06-24 09:01
5
7,302 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to add constrains to FlexPepDocking?
by MajorID » Thu, 2011-06-02 11:00
2
3,390 by MajorID
Mon, 2014-04-21 06:47
Normal topic cluster error
by sudhar » Fri, 2011-06-17 05:58
1
3,078 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Missing common atom definitions in constraints
by ic3reyes » Sat, 2011-06-11 13:09
3
5,247 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling of side-chains onto membrane ab initio cluster?
by akfried » Thu, 2011-06-23 04:03
3
4,172 by nkemjika
Mon, 2014-04-21 06:47
Normal topic flexpep docking problem-----How to do with phosphorylation peptide?
by MajorID » Thu, 2011-06-02 00:37
4
6,471 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Why do non proten ligands get a very high score in kinematic loop modeling/ in general?
by a_s_a » Wed, 2011-06-15 00:03
8
8,302 by a_s_a
Mon, 2014-04-21 06:47
Normal topic Molecular Replacement with multiple chains
by brspurri » Fri, 2011-06-10 08:25
0
2,217 by brspurri
Mon, 2014-04-21 06:47
Normal topic DNA Interface design
by zadie1118 » Wed, 2011-06-22 07:05
0
2,231 by zadie1118
Mon, 2014-04-21 06:47
Normal topic protein structure prediction using relax -- high-powered jobs
by rfieldhouse » Mon, 2011-05-30 18:29
7
7,972 by dimaio
Mon, 2014-04-21 06:47
Normal topic score to use for picking top docking solutions?
by sudhar » Tue, 2011-06-14 06:47
3
6,075 by weitzner
Mon, 2014-04-21 06:47
Normal topic ERROR: no fragment to compute secondary structure
by byin » Sun, 2011-08-07 23:55
3
4,662 by smlewis
Mon, 2014-04-21 06:47
Normal topic Unable to run Rosetta LoopModeling application
by BDBorrillo » Tue, 2011-07-19 14:06
2
5,610 by BDBorrillo
Mon, 2014-04-21 06:47
Normal topic Compiling Rosetta 3.3 on Linux Mint
by proteinproteindock » Thu, 2011-09-01 16:05
2
3,857 by proteinproteindock
Mon, 2014-04-21 06:47
Normal topic relax with resfile
by gw » Fri, 2011-08-05 10:57
3
6,345 by nannemdp
Mon, 2014-04-21 06:47
Normal topic flexpepdock flag "-packing:unboundrot"
by gw » Mon, 2011-07-11 12:23
2
4,193 by Ora Schueler-Furman
Mon, 2014-04-21 06:47
Normal topic Problems with Ligand Docking
by saxen » Fri, 2011-08-19 00:19
8
9,105 by glemmon
Mon, 2014-04-21 06:47
Normal topic score_jd2.linuxgccrelease documentation
by fglaser » Mon, 2011-08-01 04:08
1
4,171 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to define pi-pi stacking in cst file?
by lzx32 » Mon, 2011-07-04 23:47
6
8,375 by lzx32
Mon, 2014-04-21 06:47
Normal topic partial ab initio modeling
by fred » Wed, 2011-08-17 14:14
3
4,325 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fragment Files
by nkemjika » Fri, 2011-07-22 15:11
1
3,169 by dgront
Mon, 2014-04-21 06:47
Normal topic Abrelax - Dunbrack02.lib.bin missing
by omirus » Sun, 2011-09-18 06:30
3
5,079 by smlewis
Mon, 2014-04-21 06:47
Normal topic Standalone alanine scanning protocol
by exchhattu » Thu, 2011-10-13 19:40
1
5,530 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-'
by AG88 » Thu, 2011-11-03 01:25
4
7,859 by weitzner
Mon, 2014-04-21 06:47
Normal topic Fragments for long sequence
by exchhattu » Tue, 2011-10-04 01:51
2
3,343 by exchhattu
Mon, 2014-04-21 06:47
Normal topic prepack_example.sh error message
by sacch » Sun, 2011-10-23 23:22
2
3,419 by sacch
Mon, 2014-04-21 06:47
Normal topic [SOLVED] swamped memory
by fred » Fri, 2011-09-16 08:19
13
12,795 by fred
Mon, 2014-04-21 06:47
Normal topic Enzyme design with variable CST blocks possible?
by petrikigor » Thu, 2011-10-06 11:24
6
7,418 by petrikigor
Mon, 2014-04-21 06:47
Normal topic InterfaceAnalyzer -resfile
by gw » Wed, 2011-11-02 16:01
1
2,997 by smlewis
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax Disulfide Bonds are not being retained
by brspurri » Wed, 2011-09-28 13:55
1
4,534 by parmef
Mon, 2014-04-21 06:47
Normal topic Error while running Enzyme Design
by saxen » Fri, 2011-10-21 15:46
11
11,403 by akpole
Mon, 2014-04-21 06:47
Normal topic fragment_picker with fasta only
by gw » Tue, 2011-11-15 13:20
3
4,565 by gw
Mon, 2014-04-21 06:47
Normal topic RosettaRemodel
by gw » Wed, 2011-09-14 13:24
2
3,744 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg_monomer.mpi
by gw » Thu, 2011-10-27 16:45
3
4,348 by smlewis
Mon, 2014-04-21 06:47
Normal topic minimize_with_cst problems (ddg_monomer)
by alexn » Tue, 2011-09-20 13:46
2
3,692 by alexn
Mon, 2014-04-21 06:47
Normal topic Structure determination combining X-ray diffraction data and NMR chemical shift
by MajorID » Mon, 2011-10-17 19:55
2
3,940 by rmoretti
Mon, 2014-04-21 06:47
Hot topic Error with recognizing rotamer library atoms
by oerbilgin » Fri, 2011-11-04 15:23
19
29,640 by oerbilgin
Mon, 2014-04-21 06:47
Normal topic Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved]
by loreseeker » Wed, 2011-09-14 08:13
2
3,757 by loreseeker
Mon, 2014-04-21 06:47
Normal topic [SOLVED]core.io.silent: [ WARNING ] ...
by fred » Wed, 2011-10-05 07:38
8
8,338 by fred
Mon, 2014-04-21 06:47
Normal topic behind threading protocol
by fred » Tue, 2011-10-25 05:37
0
2,282 by fred
Mon, 2014-04-21 06:47
Normal topic cluster.mpi running in MPI mode?
by sacch » Fri, 2011-11-18 23:30
2
4,548 by sacch
Mon, 2014-04-21 06:47
Normal topic ddg with ligands
by bhaines1 » Mon, 2011-12-05 14:32
4
5,781 by rmoretti
Mon, 2014-04-21 06:47
Normal topic proline patching problem
by xun » Tue, 2012-01-03 11:15
3
4,102 by xun
Mon, 2014-04-21 06:47
Normal topic Runnig Abinitio & score app
by Gaurav_kumar » Wed, 2011-11-23 20:45
9
11,987 by rmoretti
Mon, 2014-04-21 06:47
Hot topic Run AbinitioRelax (rosetta 3.3) on cluster
by grisha » Mon, 2011-12-12 14:20
18
18,299 by grisha
Mon, 2014-04-21 06:47
Normal topic loop modeling during enzyme design?
by lzx32 » Wed, 2011-11-16 00:30
6
6,224 by lzx32
Mon, 2014-04-21 06:47
Normal topic problems in InterfaceAnalyzer analysis
by chenchaozhao » Fri, 2011-12-02 23:36
9
9,013 by smlewis
Mon, 2014-04-21 06:47
Normal topic How do you use two patches simulataneously with ab initio folding?
by smiruthi » Wed, 2011-12-21 15:24
5
5,565 by wangyr
Mon, 2014-04-21 06:47
Normal topic Don't know how to extract scores from a RNA de novo silent file.
by Basantab » Wed, 2011-11-23 17:27
10
10,327 by smlewis
Mon, 2014-04-21 06:47
Normal topic RMS determination using Rosetta 3.3
by adraney » Thu, 2011-12-08 12:44
2
3,439 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic Representing Cross-linked nitrogens
by jjlee2 » Sat, 2011-11-26 18:42
1
2,553 by smlewis
Mon, 2014-04-21 06:47
Hot topic Garbled Ligands from docking_protocol
by skovacs » Tue, 2011-12-20 07:55
21
20,010 by skovacs
Mon, 2014-04-21 06:47
Normal topic rosetta scores for mutated structures
by harshkhare » Wed, 2011-11-23 09:30
1
2,929 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Idealize in Rosetta 3.3
by jadolfbr » Tue, 2011-12-06 11:59
2
3,326 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic limit_cluster_size default value
by sacch » Thu, 2011-11-24 17:57
2
3,035 by sacch
Mon, 2014-04-21 06:47

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