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Rosetta 3 - Applications
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FAQ by admin » Mon, 2010-08-30 04:18 |
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16,944 |
by admin Fri, 2015-09-04 16:17 |
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Dock cyclic peptide with non-canonical amino acids to protein target using rosetta flexpepdock? by lei » Mon, 2023-09-11 23:34 |
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104 |
by lei Wed, 2023-09-13 19:35 |
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ValueError("Path %s does not exist!" % path_name) for rna_helix.py by kameisel » Wed, 2023-08-16 00:39 |
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150 |
by kameisel Wed, 2023-09-13 02:16 |
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FixedBB design output no beta strands by tkoh » Fri, 2023-08-25 01:02 |
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124 |
by rmoretti Tue, 2023-08-29 20:13 |
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How do I compare the results of InterfaceAnalyzer using different trimers as input? by franz72 » Sun, 2023-08-06 10:10 |
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100 |
by franz72 Sun, 2023-08-06 10:10 |
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Rosetta Design: Non-canonical amino acid substrate not accepted by Friedrich Ehinger » Fri, 2023-08-04 00:09 |
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157 |
by Friedrich Ehinger Fri, 2023-08-04 08:38 |
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Multistate design issues with -run:msd_job_dist option and MSDMover by elaine.thai » Wed, 2020-05-13 18:07 |
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2,692 |
by Jane_002 Thu, 2023-08-03 19:47 |
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RECCESS-Rosetta Segmentation Fault with nonnatural residues by skorro » Tue, 2023-07-25 17:13 |
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166 |
by skorro Fri, 2023-07-28 12:20 |
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Antibody Structure Prediction - Error on antibody_H3 step: "Option matching -antibody:remodel not found in command line" by ramon-arg » Mon, 2023-07-24 17:56 |
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85 |
by ramon-arg Mon, 2023-07-24 17:56 |
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ERROR: ResidueType::add_ring: Requested atoms don't exist in this ResidueType! by walidabualafia » Thu, 2023-07-20 09:44 |
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120 |
by rmoretti Thu, 2023-07-20 10:08 |
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fragment_picker:[ ERROR ] UtilityExitException ERROR: can't open file: $ROSETTA/tools/fragment_tools/vall.jul19.2011.gz by yueyuedake » Wed, 2023-07-12 03:36 |
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304 |
by yueyuedake Sun, 2023-07-16 19:17 |
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rosetta_cm - ERROR: Assertion `tlen < slen` failed on File: src/core/fragment/util.cc:177 by ramon-arg » Thu, 2023-07-13 18:41 |
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171 |
by ramon-arg Fri, 2023-07-14 07:47 |
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Memory Leak in FragmentPicker.cxx11thread application by Corvin » Tue, 2023-07-11 06:04 |
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119 |
by Corvin Thu, 2023-07-13 05:30 |
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PyIgClassify cannot renumber and label CDRs my Nanobody-Antigen complex for RabD by WBNeT » Fri, 2023-07-07 10:58 |
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156 |
by jadolfbr Mon, 2023-07-10 09:05 |
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EMERALD method not working, Rosetta version not available for download by seba » Thu, 2023-05-04 08:14 |
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586 |
by rmoretti Mon, 2023-07-10 08:57 |
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cluster docked pdbs by kwu030 » Wed, 2023-06-14 22:48 |
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222 |
by rmoretti Wed, 2023-06-28 12:36 |
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Generating a new Vall database by vijay.anand » Tue, 2023-06-20 12:08 |
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135 |
by vijay.anand Tue, 2023-06-20 12:08 |
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Silent File Scores Missing: RNA Protein Complex Predition by axio23 » Fri, 2023-06-16 05:45 |
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149 |
by axio23 Fri, 2023-06-16 05:45 |
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non-zero ddG of binding even without mutations by top-gun98 » Wed, 2023-06-07 17:19 |
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144 |
by top-gun98 Wed, 2023-06-07 17:19 |
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CC (or similar) calculation for cryoEM fitting by almeida85 » Tue, 2023-05-16 01:32 |
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265 |
by almeida85 Tue, 2023-05-23 08:23 |
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dG_separated values comparison by almeida85 » Mon, 2023-04-24 03:34 |
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205 |
by almeida85 Tue, 2023-05-16 01:02 |
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Error with xml script by almeida85 » Tue, 2023-03-28 01:53 |
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257 |
by almeida85 Tue, 2023-05-16 01:00 |
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Simple_cycpep_predict with crosslinker BBMB by Ken » Tue, 2023-05-09 08:52 |
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179 |
by Ken Tue, 2023-05-09 08:52 |
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Docking one protein into interface between two other proteins by Cheems » Sat, 2023-05-06 09:49 |
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317 |
by rmoretti Mon, 2023-05-08 13:14 |
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Missing atoms, unable to fill in missing atoms by kwu030 » Fri, 2023-05-05 13:41 |
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206 |
by rmoretti Fri, 2023-05-05 13:44 |
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unable to generate the span file with "mp_span_from_pdb.default.linuxgccrelease" from a PDB file by Sajjad » Wed, 2022-11-30 11:40 |
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3,723 |
by FJOM Wed, 2023-05-03 07:21 |
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Problems with ligand when running RosettaLigand by Cat » Mon, 2013-05-20 15:58 |
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6,235 |
by Aben Tue, 2023-04-18 01:31 |
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XML validation failing by mb0261 » Fri, 2023-04-14 14:53 |
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878 |
by mb0261 Mon, 2023-04-17 17:38 |
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error in loop remodeling by syntekabio2019 » Wed, 2023-04-05 01:00 |
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188 |
by syntekabio2019 Wed, 2023-04-05 01:01 |
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Protein Protein Docking with Linker by mrinal » Mon, 2023-03-20 15:58 |
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535 |
by mrinal Mon, 2023-03-20 15:58 |
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core.pose.util: (0) {0} [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard by ldx022 » Thu, 2023-03-16 04:13 |
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921 |
by ldx022 Thu, 2023-03-16 04:13 |
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Lots of Prepacking Jobs for Snugdock Failing by katherinemccoy » Tue, 2023-02-28 18:17 |
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2,104 |
by katherinemccoy Mon, 2023-03-13 19:10 |
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ReplicaDock 2.0 Native vs Input Structure Flags Confusion by katherinemccoy » Tue, 2022-12-27 06:42 |
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4,225 |
by katherinemccoy Tue, 2023-02-28 18:19 |
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how to control alignment for energy_based_clustering by xfradera » Tue, 2023-02-28 10:13 |
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1,661 |
by xfradera Tue, 2023-02-28 10:13 |
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ligand_docking by yang » Thu, 2023-02-16 04:37 |
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2,014 |
by yang Wed, 2023-02-22 19:18 |
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St13runtime_error in Rosetta ligand docking by syntekabio2019 » Thu, 2023-02-09 18:18 |
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2,518 |
by syntekabio2019 Sun, 2023-02-19 18:39 |
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How to change the axes of "-spin" in docking_protocol by Zehui Zhou » Mon, 2023-02-13 22:06 |
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1,740 |
by Zehui Zhou Mon, 2023-02-13 22:06 |
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Comparing a prediction to the native structure and calculate RMSD for RNA by danwolf_33 » Thu, 2023-02-09 09:32 |
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1,652 |
by danwolf_33 Thu, 2023-02-09 09:34 |
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relax protein with multi-conformer bound ligand by xfradera » Thu, 2023-01-12 09:10 |
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2,814 |
by rmoretti Mon, 2023-02-06 15:06 |
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prepack - residue count fails by xfradera » Fri, 2023-01-27 06:36 |
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900 |
by xfradera Fri, 2023-01-27 06:36 |
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Different scoring applications (score vs score_aln vs score_jd2, etc.)? by cossio » Fri, 2014-12-26 07:19 |
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4,296 |
by Patrícia Antunes Fri, 2023-01-20 11:55 |
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snugdock(sequence position requested was greater than the number of residues in the pose) by lei » Thu, 2023-01-12 01:40 |
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1,887 |
by lei Fri, 2023-01-20 08:11 |
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Grafting using antibody.mpi.linuxgccrelease and specifying custom template which doesnt have pdb id. by SubhaK » Wed, 2023-01-18 23:33 |
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753 |
by SubhaK Wed, 2023-01-18 23:33 |
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Snugdock Error: The sequence position requested was greater than the number of residues by stannowitz » Tue, 2023-01-17 07:37 |
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871 |
by stannowitz Tue, 2023-01-17 23:48 |
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RosettaCM Ignoring Ligand by Delfosse57 » Sun, 2022-12-04 12:05 |
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3,753 |
by Delfosse57 Sun, 2022-12-04 12:05 |
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Unable to locate the "compute_ddg.py" file and running the RosettaMP protocol by Sajjad » Mon, 2022-11-28 14:09 |
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4,384 |
by Sajjad Wed, 2022-11-30 11:50 |
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The confussion about an example in tutorial in Rosetta Virtual Workshop 2020 by ldx022 » Tue, 2022-11-29 04:58 |
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3,895 |
by ldx022 Tue, 2022-11-29 08:38 |
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Score.sc file showing total score 0 for all protein structures created by aanshi » Wed, 2022-11-23 11:13 |
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3,102 |
by nannemdp Mon, 2022-11-28 09:39 |
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Help to understand docking results by rtorquato » Fri, 2022-11-25 12:05 |
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1,251 |
by rtorquato Fri, 2022-11-25 12:05 |
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snugdock: constrained backbone by mahendra » Mon, 2022-11-14 02:51 |
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1,504 |
by mahendra Mon, 2022-11-14 02:51 |
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Ligand Rotamer Control in Macther by Hirbond » Tue, 2022-10-25 13:01 |
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1,561 |
by Hirbond Wed, 2022-10-26 12:57 |
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Setting pivots points for GenKIC by almeida85 » Tue, 2022-10-25 02:32 |
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1,474 |
by almeida85 Tue, 2022-10-25 02:32 |
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Small molecule dimer/trimer/etc docking by lukasz » Tue, 2022-10-04 06:49 |
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1,406 |
by rmoretti Tue, 2022-10-04 07:57 |
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Symmetry definition question by mrconde96 » Sun, 2022-10-02 05:34 |
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1,124 |
by mrconde96 Sun, 2022-10-02 05:34 |
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Old Knotfind algorithm by Martin Floor » Thu, 2022-09-22 07:28 |
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811 |
by rmoretti Fri, 2022-09-23 09:38 |
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ReplicaDock2.0 demo fails with MPIFileBufJobDistributor: (1) [ ERROR ] by erpannec » Tue, 2022-08-09 05:42 |
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1,234 |
by erpannec Thu, 2022-09-15 05:17 |
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Prepacking a macrocycle for docking / preserving cyclization by almeida85 » Thu, 2022-09-08 06:54 |
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575 |
by almeida85 Thu, 2022-09-08 06:54 |
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Trehalose by jpfuenzalidawx » Thu, 2022-09-08 00:49 |
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533 |
by jpfuenzalidawx Thu, 2022-09-08 00:49 |
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Macrocycle from a C-terminal amidated peptide by almeida85 » Thu, 2022-08-18 07:53 |
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657 |
by almeida85 Thu, 2022-08-18 07:53 |
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Docking HeparinSulfate to proteins using GlycanDock by GebauerJ » Tue, 2022-08-16 07:44 |
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632 |
by GebauerJ Tue, 2022-08-16 07:44 |
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RIFdocking：Unable to locate database file chemical/residue_type_sets/fa_standard/residue_types/ by sia » Tue, 2022-08-02 20:06 |
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1,229 |
by SeongRyeong Go Mon, 2022-08-15 18:31 |
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simple_cycpep_predict - Design mode - The base name "ARG" was added more than once by almeida85 » Thu, 2022-08-04 02:57 |
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1,138 |
by almeida85 Thu, 2022-08-11 00:58 |
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Urgent issue: Error with submitting a new Rosetta-Vienna RNP-ddG job by eyaaaan » Sun, 2022-08-07 22:03 |
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645 |
by eyaaaan Tue, 2022-08-09 21:59 |
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Nanobody design by chandana » Tue, 2022-08-09 20:36 |
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798 |
by chandana Tue, 2022-08-09 20:36 |
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How to choose designed antibody by Sunyp_IM » Wed, 2020-06-24 10:06 |
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3,427 |
by chandana Tue, 2022-08-09 20:27 |
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Unknown Element "SE" when generating NCAA params file containing selenium by liuwenxi » Thu, 2022-08-04 16:24 |
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842 |
by liuwenxi Fri, 2022-08-05 09:50 |
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Include MHC alpha helices in loop modelling protocol for pMHC complex by Roberto » Thu, 2022-08-04 07:22 |
0 |
592 |
by Roberto Thu, 2022-08-04 07:22 |
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pMHC modelling by Roberto » Thu, 2022-08-04 07:11 |
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553 |
by Roberto Thu, 2022-08-04 07:11 |
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CS-Rosetta cofactor by martongadanecz » Wed, 2022-08-03 01:05 |
0 |
585 |
by martongadanecz Wed, 2022-08-03 01:05 |
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errors about RIFdocking by sia » Sun, 2022-07-24 20:45 |
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1,662 |
by sia Tue, 2022-08-02 20:08 |
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Benchmarking Rosetta DDG Methods by sareeves96 » Fri, 2022-07-29 09:55 |
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632 |
by sareeves96 Fri, 2022-07-29 09:55 |
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ERROR: Assertion `static_cast< size_type >( i - l_ ) < super::size()` failed. ERROR:: Exit from: src/utility/vectorL.hh line: 42 by yliang20 » Wed, 2022-06-15 22:22 |
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866 |
by adriancmf25 Thu, 2022-07-28 02:09 |
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Expected density by GabrielDucrocq » Thu, 2022-07-14 06:38 |
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736 |
by matteoferla Wed, 2022-07-20 10:50 |
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shape complementarity by holdenj » Fri, 2022-07-15 13:24 |
1 |
734 |
by rmoretti Fri, 2022-07-15 13:50 |
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Error with RNA_denovo by zmfowler » Thu, 2022-07-14 05:34 |
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573 |
by zmfowler Thu, 2022-07-14 05:34 |
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Error with RoseTTAFold by sc19 » Thu, 2022-07-14 03:40 |
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689 |
by sc19 Thu, 2022-07-14 03:40 |
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Ligand Docking with ROSETTA by sc19 » Thu, 2022-07-14 01:32 |
0 |
636 |
by sc19 Thu, 2022-07-14 01:34 |
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Per residue total score by johnnytam100 » Wed, 2022-07-13 21:57 |
0 |
577 |
by johnnytam100 Wed, 2022-07-13 21:57 |
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SnugDock Partners parameter by tyang39 » Fri, 2022-07-08 10:02 |
1 |
700 |
by rmoretti Fri, 2022-07-08 10:27 |
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Pepspec - sequence sampling by almeida85 » Thu, 2022-06-23 04:05 |
0 |
580 |
by almeida85 Thu, 2022-06-23 05:50 |
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Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0. by daniloboskovic » Fri, 2019-11-08 08:24 |
1 |
2,776 |
by Payne Tue, 2022-06-21 07:25 |
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Could not open file /Rosetta/rosetta_bin_linux_2020.08.61146_bundle/main/database/citations/rosetta_citations by yliang20 » Wed, 2022-06-15 11:26 |
2 |
1,055 |
by yliang20 Wed, 2022-06-15 13:46 |
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Segmentation Fault in Rosetta CM Hybridize by yliang20 » Mon, 2022-06-06 17:25 |
2 |
987 |
by yliang20 Tue, 2022-06-07 08:36 |
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Local docking- should I use KIC? by seayoung lee » Fri, 2022-05-27 02:45 |
0 |
671 |
by seayoung lee Fri, 2022-05-27 02:45 |
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Params for a stapled helix peptide by e3lm » Thu, 2022-05-26 12:55 |
0 |
644 |
by e3lm Thu, 2022-05-26 12:55 |
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Noncanonical amino acids by wsgosal » Tue, 2014-03-18 05:29 |
8 |
6,807 |
by e3lm Thu, 2022-05-26 12:51 |
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IL-2 gets better binding with beta / gamma by tonycheng1688 » Wed, 2022-05-25 10:23 |
0 |
663 |
by tonycheng1688 Wed, 2022-05-25 10:23 |
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Relax evaluates protein-DNA complexes? by pablogalazdavison » Thu, 2022-05-12 12:05 |
2 |
1,065 |
by pablogalazdavison Fri, 2022-05-20 12:27 |
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Enzyme Design Not Editing Structure by liuwenxi » Wed, 2022-05-18 10:12 |
0 |
661 |
by liuwenxi Wed, 2022-05-18 10:12 |
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minimize_ppi.mpi.linuxgccrelease doesn't use jd2? by e3lm » Tue, 2022-05-17 11:58 |
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710 |
by e3lm Tue, 2022-05-17 11:58 |
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Disulfidize- "Extra content at the end of the document" by ldlamini » Tue, 2022-05-17 02:37 |
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893 |
by rmoretti Tue, 2022-05-17 07:29 |
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Flex_ddG突变设计 by wangtao » Thu, 2022-05-05 02:46 |
0 |
717 |
by wangtao Thu, 2022-05-05 02:46 |
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Dimeric interface redesign by kjs1728 » Mon, 2022-05-02 21:57 |
0 |
651 |
by kjs1728 Mon, 2022-05-02 21:57 |
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Pepspec error by almeida85 » Mon, 2022-05-02 04:07 |
1 |
792 |
by almeida85 Mon, 2022-05-02 05:05 |
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about “protein mimic designer” by sia » Wed, 2022-04-27 19:59 |
0 |
730 |
by sia Wed, 2022-04-27 19:59 |
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How to Perform point mutations with NCAA by Subhrodeep Saha » Tue, 2021-06-22 02:05 |
2 |
1,672 |
by dnamkr Fri, 2022-04-22 17:00 |
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Ways to improve AbRelax performance? by Corvin » Tue, 2022-04-19 06:10 |
2 |
1,409 |
by Corvin Thu, 2022-04-21 00:50 |
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trRosetta - Nan occuring in Hbond calculation by y_atsmonraz » Mon, 2021-10-04 09:16 |
1 |
963 |
by shivarawat115 Mon, 2022-04-11 16:10 |
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problem in using "zinc_site_redesign" tool by Isomerase » Mon, 2022-03-28 01:19 |
0 |
607 |
by Isomerase Mon, 2022-03-28 01:19 |
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snugdock run error: Sequence for partner1 does not match first member of ensemble1 by pagumaaaaa » Fri, 2022-03-25 01:21 |
0 |
709 |
by pagumaaaaa Fri, 2022-03-25 01:21 |
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