You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
Topic / Topic starter |
Replies | Views | Last post | |
|---|---|---|---|---|
|
Sticky:
FAQ by admin » Mon, 2010-08-30 04:18 |
0 |
8,034 |
by admin Fri, 2015-09-04 16:17 |
|
|
The error of InterfaceAnalyzer by asbelx » Thu, 2017-12-21 19:04 |
3 |
2,877 |
by smlewis Sat, 2017-12-23 15:56 |
|
|
[TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed by tevang » Wed, 2013-04-10 15:07 |
5 |
3,818 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
[SOLVED]core.io.silent: [ WARNING ] ... by fred » Wed, 2011-10-05 07:38 |
8 |
6,342 |
by fred Mon, 2014-04-21 06:47 |
|
|
[SOLVED] swamped memory by fred » Fri, 2011-09-16 08:19 |
13 |
9,650 |
by fred Mon, 2014-04-21 06:47 |
|
|
[Solved] RosettaAntibody3 - Grafting step is failing to detect H3 from the input sequence by brspurri » Mon, 2021-01-04 16:46 |
1 |
700 |
by brspurri Mon, 2021-01-18 18:14 |
|
|
[Solved] Resetting a pose with RigidBodyTransMover by bjharris » Wed, 2021-01-13 14:01 |
1 |
577 |
by bjharris Fri, 2021-01-22 17:34 |
|
|
[LoopModelerMover] ERROR: Can't build a fold tree from a loop with an unspecified cut point. by dgm3 » Sun, 2021-12-26 18:32 |
1 |
285 |
by dgm3 Fri, 2021-12-31 17:42 |
|
|
zero standard deviation of I_sc in protein-protein docking by rohi » Fri, 2020-07-03 22:19 |
0 |
450 |
by rohi Fri, 2020-07-03 22:20 |
|
|
Zero residues error in docking by cjy318 » Tue, 2020-07-28 19:47 |
0 |
542 |
by cjy318 Tue, 2020-07-28 19:47 |
|
|
xyzVector error in Enzyme design by ajmbarbosa » Tue, 2016-01-05 09:46 |
3 |
3,356 |
by rmoretti Fri, 2016-06-17 10:36 |
|
|
Writing down properties for new atom types by Corvin » Tue, 2021-01-12 04:30 |
0 |
357 |
by Corvin Wed, 2021-01-13 04:00 |
|
|
Write one's own constraint type by djpittdj » Thu, 2012-11-08 12:29 |
7 |
5,393 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Write error during saving of PDB-file after working with it in the Rosetta through Unix terminal by Corvin » Thu, 2019-04-25 01:20 |
2 |
1,508 |
by Corvin Wed, 2019-06-12 00:04 |
|
|
Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file? by lanselibai » Sun, 2014-11-16 10:26 |
3 |
2,979 |
by G Mustafa Thu, 2018-10-18 05:31 |
|
|
why is talaris2014 scoring fuction not used with ligand docking? by banshee » Fri, 2016-09-09 01:19 |
1 |
1,629 |
by rmoretti Fri, 2016-09-09 07:47 |
|
|
Why is proline hydroxylated？ by kwonglynn » Tue, 2013-06-25 02:38 |
3 |
4,430 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Why do non proten ligands get a very high score in kinematic loop modeling/ in general? by a_s_a » Wed, 2011-06-15 00:03 |
8 |
6,333 |
by a_s_a Mon, 2014-04-21 06:47 |
|
|
where to look for positive sign for solution in mr-rosetta3.4? by lchen » Tue, 2012-07-10 09:38 |
2 |
2,544 |
by lchen Mon, 2014-04-21 06:47 |
|
|
Where is the RosettaHoles2 executable? by lah435 » Mon, 2012-06-04 15:15 |
11 |
6,878 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
where is pdb2vall.py by tevang » Thu, 2013-01-24 13:35 |
7 |
5,785 |
by dktest Mon, 2014-04-21 06:47 |
|
|
where is generate_ligens.linuxgccrelease? by Nicole Deng » Thu, 2020-12-03 00:00 |
2 |
894 |
by Nicole Deng Fri, 2020-12-18 00:28 |
|
|
When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error by Martin Floor » Thu, 2020-09-17 06:01 |
4 |
1,458 |
by Martin Floor Tue, 2020-09-22 00:48 |
|
|
What means "[ ERROR ] TIME_STAMP: AbrelaxMover: finished ...NO_BATCH S_0001." by Corvin » Thu, 2020-04-02 00:16 |
0 |
636 |
by Corvin Thu, 2020-04-02 00:16 |
|
|
What is interface_cutoff_distance? And why did my residues outside this value get designed? by chrisHKL » Fri, 2020-02-28 14:52 |
0 |
551 |
by chrisHKL Fri, 2020-02-28 14:52 |
|
|
What is an SS0 predictor? by ojmel » Fri, 2021-04-02 14:25 |
0 |
348 |
by ojmel Mon, 2021-04-12 07:50 |
|
|
What is a rational minimal value for the "-nstruct" option by Sunyp_IM » Fri, 2020-05-22 01:28 |
3 |
1,300 |
by nannemdp Sun, 2020-05-24 14:46 |
|
|
what does initialize_rigid_body_dofs do? by attesor » Mon, 2015-10-26 05:12 |
3 |
3,149 |
by rmoretti Tue, 2015-11-10 11:35 |
|
|
What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"? by lanselibai » Fri, 2014-10-17 06:06 |
3 |
20,231 |
by rmoretti Fri, 2014-10-17 10:17 |
|
|
weights for pH_protocol by fmerino » Wed, 2017-04-26 07:14 |
1 |
1,542 |
by rmoretti Thu, 2017-04-27 07:10 |
|
|
Weighted scores?? by sizhang » Wed, 2018-12-05 15:22 |
0 |
667 |
by sizhang Wed, 2018-12-05 15:22 |
|
|
Ways to improve AbRelax performance? by Corvin » Tue, 2022-04-19 06:10 |
2 |
179 |
by Corvin Thu, 2022-04-21 00:50 |
|
|
Warnings during relax by cossio » Thu, 2018-10-11 14:42 |
2 |
2,081 |
by rmoretti Mon, 2019-11-04 13:56 |
|
|
Warning: Fold tree is not set properly for density scoring by ahansel » Mon, 2020-07-13 10:50 |
1 |
761 |
by danpf Tue, 2020-07-14 10:27 |
|
|
Warning messages in Interface analyzer output by Pernille » Wed, 2015-03-25 00:53 |
4 |
3,570 |
by rmoretti Tue, 2015-03-31 08:20 |
|
|
wallpaper symmetry definition file by aaj » Fri, 2016-02-26 08:40 |
0 |
1,074 |
by aaj Fri, 2016-02-26 08:40 |
|
|
VH-VL Orientation in antibody by sujigeorge1979 » Mon, 2019-06-17 01:23 |
1 |
1,133 |
by jeliazkov Mon, 2019-06-17 06:03 |
|
|
very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
2 |
2,499 |
by attesor Tue, 2015-11-17 07:36 |
|
|
variable length fragments for Ab initio by attesor » Wed, 2015-07-01 06:13 |
7 |
5,503 |
by rmoretti Tue, 2015-08-18 16:47 |
|
|
using Rosetta to compute pH dependent binding? by JuliusSu » Sun, 2014-06-15 20:28 |
3 |
4,023 |
by rmoretti Tue, 2014-06-17 08:51 |
|
|
Using Rosetta Docking for nucleic acids by Adrien Guilhot » Thu, 2011-04-28 06:16 |
3 |
4,234 |
by Adrien Guilhot Mon, 2014-04-21 06:47 |
|
|
Using Rmsd RosettaScripts filter with alignment files by bjharris » Sun, 2020-11-08 15:51 |
1 |
608 |
by rmoretti Sun, 2020-11-08 18:56 |
|
|
Using residue patches in AbinitioRelax by kent » Fri, 2018-11-02 11:19 |
1 |
1,313 |
by rmoretti Wed, 2018-11-21 15:40 |
|
|
using piper-flexpepdock by syntekabio2019 » Thu, 2019-12-12 01:22 |
0 |
767 |
by syntekabio2019 Thu, 2019-12-12 01:22 |
|
|
Using MoveMap within Relax Application? by m_grisewood » Mon, 2012-08-13 12:21 |
5 |
5,907 |
by m_grisewood Mon, 2014-04-21 06:47 |
|
|
Using GlycanDock and the Antibody Affinity Maturation protocol. by tbelec » Mon, 2022-02-28 12:37 |
0 |
202 |
by tbelec Mon, 2022-02-28 12:37 |
|
|
Using different number of 9-mers (UPDATED) by JadAbbass » Mon, 2017-08-28 07:20 |
1 |
1,415 |
by rmoretti Mon, 2017-09-04 10:33 |
|
|
using DARC in rosetta by syntekabio2019 » Thu, 2019-12-12 01:27 |
0 |
647 |
by syntekabio2019 Thu, 2019-12-12 01:27 |
|
|
Using abinition to predict a new (previously unsolved) structure. by ac.research » Mon, 2017-01-09 00:59 |
0 |
1,001 |
by ac.research Mon, 2017-01-09 00:59 |
|
|
Use NMR ensemble in protein-protein docking? by cossio » Sun, 2015-09-13 07:57 |
2 |
2,491 |
by cossio Tue, 2015-09-15 12:48 |
|
|
Use membrane or non-membrane weights in RosettaCM for a hexon in virus capsid? by lanselibai » Sat, 2020-04-11 02:10 |
0 |
608 |
by lanselibai Sat, 2020-04-11 02:10 |
|
|
Use "loopmodel.linuxgccrelease" CCD to build missing residue positions by lanselibai » Sun, 2014-10-12 09:00 |
2 |
2,802 |
by lanselibai Mon, 2014-10-13 10:10 |
|
|
Usage of the TaskOperations "RestrictToCDRsAndNeighbors" by johnnytam100 » Wed, 2019-04-10 02:58 |
1 |
1,054 |
by rmoretti Wed, 2019-07-10 10:10 |
|
|
usage of score3 by Run » Sat, 2013-09-28 02:06 |
16 |
14,173 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
|
Up to date Vall database by JadAbbass » Sat, 2013-06-29 10:35 |
3 |
4,759 |
by rmoretti Tue, 2017-06-20 09:02 |
|
|
UnfoldedStateEnergyCalculator MPI Error by colin.walsh.brown » Mon, 2017-11-13 09:43 |
1 |
1,370 |
by smlewis Mon, 2017-11-13 10:43 |
|
|
Unexpected Error with RosettaCM - by terry » Fri, 2019-02-22 14:26 |
1 |
2,529 |
by rmoretti Fri, 2019-03-29 12:25 |
|
|
Undesirable behaviour of PoseFromSFRBuilder regarding Hydrogen atoms by Corvin » Wed, 2020-12-02 04:00 |
1 |
607 |
by rmoretti Wed, 2020-12-02 07:27 |
|
|
Unable to understand fragment picking tutorial points. by Danielsebas » Thu, 2019-09-05 03:44 |
4 |
1,894 |
by danpf Fri, 2019-09-06 11:29 |
|
|
Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking) by snorp » Mon, 2014-04-14 13:01 |
2 |
3,206 |
by jadolfbr Mon, 2014-05-12 10:41 |
|
|
Unable to run Rosetta LoopModeling application by BDBorrillo » Tue, 2011-07-19 14:06 |
2 |
4,598 |
by BDBorrillo Mon, 2014-04-21 06:47 |
|
|
Two questions on the RosettaScripts flexbb-interfacedesign.xml by johnnytam100 » Fri, 2019-03-15 04:54 |
1 |
1,156 |
by rmoretti Fri, 2019-03-29 09:58 |
|
|
trRosetta protocol Segmentation Fault by nc-ring » Wed, 2021-04-28 11:57 |
5 |
1,215 |
by nc-ring Tue, 2021-05-04 12:26 |
|
|
trRosetta - Nan occuring in Hbond calculation by y_atsmonraz » Mon, 2021-10-04 09:16 |
1 |
274 |
by shivarawat115 Mon, 2022-04-11 16:10 |
|
|
Trouble running MPI docking protocol, please help! by Rob_Barringer » Tue, 2020-08-18 06:40 |
2 |
1,405 |
by Rob_Barringer Fri, 2020-09-25 05:45 |
|
|
Trouble running Enzyme Design application by danaitop » Thu, 2016-08-11 13:34 |
2 |
2,072 |
by rmoretti Mon, 2016-09-05 11:10 |
|
|
trouble in floppytail modelling by ytao » Thu, 2013-06-27 13:15 |
1 |
2,032 |
by ytao Mon, 2014-04-21 06:48 |
|
|
Trouble enforcing a disulfide in loop building by chelsell » Sun, 2015-05-10 16:31 |
2 |
2,945 |
by chelsell Wed, 2015-05-27 14:36 |
|
|
Transmembrane helix fold-and-dock? by sarah_b » Tue, 2020-05-12 02:09 |
3 |
1,406 |
by jkleman Tue, 2020-05-19 15:02 |
|
|
Translate mover chain X doesnot exist. by surya » Thu, 2020-07-09 08:36 |
6 |
1,986 |
by rmoretti Tue, 2020-07-14 10:54 |
|
|
Total score problems with high-res ddg_monomer by jklesmith » Tue, 2015-03-10 15:54 |
2 |
2,809 |
by jennifer Fri, 2015-03-27 05:56 |
|
|
Topobuilder segmentation fault by tatsiana.bylund » Mon, 2021-08-09 07:10 |
0 |
503 |
by tatsiana.bylund Mon, 2021-08-09 07:10 |
|
|
too many constraints result in no output pose by Yao Wu » Sun, 2012-11-18 23:45 |
5 |
5,057 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
to create the template pdb file by benniu2004 » Sat, 2012-12-29 23:04 |
8 |
6,964 |
by benniu2004 Mon, 2014-04-21 06:47 |
|
|
Threading with Ligand by ekwan » Thu, 2018-12-06 15:10 |
1 |
1,051 |
by rmoretti Fri, 2019-03-29 13:21 |
|
|
Threading a sequence onto a template with ligands/metal ions included by ajkal » Wed, 2017-04-19 11:53 |
3 |
2,681 |
by ahmadkhalifa Sun, 2019-03-31 23:27 |
|
|
Thread target sequence by duz » Thu, 2021-04-01 10:09 |
4 |
985 |
by duz Mon, 2021-05-03 07:50 |
|
|
The Usage of motifgraft by Sunyp_IM » Sun, 2017-11-19 20:22 |
2 |
2,412 |
by Sunyp_IM Mon, 2017-11-20 19:20 |
|
|
The usage of antibody_H3.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 22:50 |
2 |
1,127 |
by Sunyp_IM Thu, 2020-06-04 08:20 |
|
|
The relax qustion of Rosetta VIP by asbelx » Mon, 2019-06-10 07:52 |
1 |
918 |
by rmoretti Mon, 2019-06-24 14:42 |
|
|
The question of ligand docking with constraints by asbelx » Mon, 2018-06-11 09:39 |
3 |
2,307 |
by rmoretti Thu, 2018-06-28 12:58 |
|
|
The question about ligand score function by asbelx » Sun, 2018-06-17 02:07 |
2 |
2,296 |
by asbelx Mon, 2018-06-18 22:34 |
|
|
The problems on pdb renumbering by Sunyp_IM » Sun, 2017-08-20 06:39 |
0 |
1,689 |
by Sunyp_IM Sun, 2017-08-20 06:39 |
|
|
the meaning of total_score in docking by libai2098 » Mon, 2011-03-21 05:46 |
2 |
3,889 |
by libai2098 Mon, 2014-04-21 06:47 |
|
|
the flexpepdock refinement and ab-initio by tfliu » Mon, 2013-12-23 19:17 |
6 |
5,199 |
by tfliu Mon, 2014-04-21 06:48 |
|
|
the extracted pdb file by benniu2004 » Fri, 2013-01-04 17:55 |
12 |
11,355 |
by benniu2004 Mon, 2014-04-21 06:47 |
|
|
The energy terms in InterfaceAnalyzer by Sunyp_IM » Tue, 2021-11-02 18:43 |
2 |
409 |
by zivben Sat, 2021-11-13 04:49 |
|
|
The difference between the H1 regions of modeled camelid antibody and the crystal structure. by Sunyp_IM » Sun, 2020-06-07 02:34 |
1 |
785 |
by nannemdp Sun, 2020-06-07 08:01 |
|
|
the ddg of mutant is same as the wt by deepanshuiitb » Wed, 2015-03-04 11:56 |
6 |
5,407 |
by jadolfbr Tue, 2015-04-07 10:50 |
|
|
terminal amino acids of gap has incomplete valency by malkeet.singh » Wed, 2017-11-29 05:20 |
6 |
3,081 |
by rmoretti Fri, 2017-12-01 12:05 |
|
|
Template/Input length mismatch error during RosettaCM by marinok » Mon, 2020-05-04 13:12 |
4 |
1,505 |
by marinok Mon, 2020-05-11 12:48 |
|
|
Syntax to extract PDB files from a silent file by lanselibai » Fri, 2014-09-26 13:48 |
1 |
3,308 |
by lanselibai Fri, 2014-09-26 14:58 |
|
|
Syntax to build a silent file by lanselibai » Fri, 2014-09-26 09:13 |
8 |
8,052 |
by lanselibai Tue, 2014-09-30 03:45 |
|
|
Syntax for the alignment file in "minirosetta comparative modeling" by lanselibai » Thu, 2014-10-16 15:29 |
3 |
3,737 |
by lanselibai Thu, 2014-10-23 03:26 |
|
|
Syntax for relax.linuxgccrelease by lanselibai » Wed, 2014-09-24 04:34 |
18 |
19,616 |
by lanselibai Tue, 2014-12-02 09:46 |
|
|
Syntax for python-based (.py) command line on cluster by lanselibai » Fri, 2014-11-14 09:32 |
2 |
4,494 |
by lanselibai Thu, 2014-11-20 02:15 |
|
|
Symmetry-aware Backrub? by gamacy » Fri, 2014-11-14 02:18 |
1 |
1,693 |
by rmoretti Tue, 2014-11-18 09:10 |
|
|
Symmetry mode in Remodel for N-terminal extension by yvonne.chan2 » Mon, 2019-11-04 13:41 |
0 |
776 |
by yvonne.chan2 Mon, 2019-11-04 13:41 |
|
|
Symmetry Docking and Clustering with Ligands by skovacs » Wed, 2012-03-07 16:46 |
9 |
9,969 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
Symmetry definition for coiled-coil dimer and trimer by kszczepaniak » Fri, 2013-10-11 05:33 |
2 |
5,052 |
by kszczepaniak Mon, 2014-04-21 06:48 |
Log in to post new content in the forum.
