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Rosetta 3 - Applications
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FAQ by admin » Mon, 2010-08-30 04:18 |
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17,030 |
by admin Fri, 2015-09-04 16:17 |
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The error of InterfaceAnalyzer by asbelx » Thu, 2017-12-21 19:04 |
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3,798 |
by smlewis Sat, 2017-12-23 15:56 |
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[TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed by tevang » Wed, 2013-04-10 15:07 |
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4,678 |
by rmoretti Mon, 2014-04-21 06:47 |
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[SOLVED]core.io.silent: [ WARNING ] ... by fred » Wed, 2011-10-05 07:38 |
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7,739 |
by fred Mon, 2014-04-21 06:47 |
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[SOLVED] swamped memory by fred » Fri, 2011-09-16 08:19 |
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11,766 |
by fred Mon, 2014-04-21 06:47 |
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[Solved] RosettaAntibody3 - Grafting step is failing to detect H3 from the input sequence by brspurri » Mon, 2021-01-04 16:46 |
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1,232 |
by brspurri Mon, 2021-01-18 18:14 |
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[Solved] Resetting a pose with RigidBodyTransMover by bjharris » Wed, 2021-01-13 14:01 |
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1,011 |
by bjharris Fri, 2021-01-22 17:34 |
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[LoopModelerMover] ERROR: Can't build a fold tree from a loop with an unspecified cut point. by dgm3 » Sun, 2021-12-26 18:32 |
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1,143 |
by dgm3 Fri, 2021-12-31 17:42 |
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zero standard deviation of I_sc in protein-protein docking by rohi » Fri, 2020-07-03 22:19 |
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755 |
by rohi Fri, 2020-07-03 22:20 |
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Zero residues error in docking by cjy318 » Tue, 2020-07-28 19:47 |
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977 |
by cjy318 Tue, 2020-07-28 19:47 |
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xyzVector error in Enzyme design by ajmbarbosa » Tue, 2016-01-05 09:46 |
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4,111 |
by rmoretti Fri, 2016-06-17 10:36 |
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XML validation failing by mb0261 » Fri, 2023-04-14 14:53 |
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1,409 |
by mb0261 Mon, 2023-04-17 17:38 |
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Writing down properties for new atom types by Corvin » Tue, 2021-01-12 04:30 |
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646 |
by Corvin Wed, 2021-01-13 04:00 |
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Write one's own constraint type by djpittdj » Thu, 2012-11-08 12:29 |
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6,460 |
by smlewis Mon, 2014-04-21 06:47 |
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Write error during saving of PDB-file after working with it in the Rosetta through Unix terminal by Corvin » Thu, 2019-04-25 01:20 |
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2,150 |
by Corvin Wed, 2019-06-12 00:04 |
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Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file? by lanselibai » Sun, 2014-11-16 10:26 |
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3,667 |
by G Mustafa Thu, 2018-10-18 05:31 |
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why is talaris2014 scoring fuction not used with ligand docking? by banshee » Fri, 2016-09-09 01:19 |
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2,045 |
by rmoretti Fri, 2016-09-09 07:47 |
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Why is proline hydroxylated？ by kwonglynn » Tue, 2013-06-25 02:38 |
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5,077 |
by rmoretti Mon, 2014-04-21 06:48 |
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Why do non proten ligands get a very high score in kinematic loop modeling/ in general? by a_s_a » Wed, 2011-06-15 00:03 |
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7,656 |
by a_s_a Mon, 2014-04-21 06:47 |
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where to look for positive sign for solution in mr-rosetta3.4? by lchen » Tue, 2012-07-10 09:38 |
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3,004 |
by lchen Mon, 2014-04-21 06:47 |
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Where is the RosettaHoles2 executable? by lah435 » Mon, 2012-06-04 15:15 |
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8,377 |
by smlewis Mon, 2014-04-21 06:47 |
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where is pdb2vall.py by tevang » Thu, 2013-01-24 13:35 |
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6,843 |
by dktest Mon, 2014-04-21 06:47 |
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where is generate_ligens.linuxgccrelease? by Nicole Deng » Thu, 2020-12-03 00:00 |
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1,572 |
by Nicole Deng Fri, 2020-12-18 00:28 |
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When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error by Martin Floor » Thu, 2020-09-17 06:01 |
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2,527 |
by Martin Floor Tue, 2020-09-22 00:48 |
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What means "[ ERROR ] TIME_STAMP: AbrelaxMover: finished ...NO_BATCH S_0001." by Corvin » Thu, 2020-04-02 00:16 |
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921 |
by Corvin Thu, 2020-04-02 00:16 |
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What is interface_cutoff_distance? And why did my residues outside this value get designed? by chrisHKL » Fri, 2020-02-28 14:52 |
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913 |
by chrisHKL Fri, 2020-02-28 14:52 |
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What is an SS0 predictor? by ojmel » Fri, 2021-04-02 14:25 |
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656 |
by ojmel Mon, 2021-04-12 07:50 |
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What is a rational minimal value for the "-nstruct" option by Sunyp_IM » Fri, 2020-05-22 01:28 |
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2,013 |
by nannemdp Sun, 2020-05-24 14:46 |
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what does initialize_rigid_body_dofs do? by attesor » Mon, 2015-10-26 05:12 |
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3,815 |
by rmoretti Tue, 2015-11-10 11:35 |
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What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"? by lanselibai » Fri, 2014-10-17 06:06 |
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20,912 |
by rmoretti Fri, 2014-10-17 10:17 |
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weights for pH_protocol by fmerino » Wed, 2017-04-26 07:14 |
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2,012 |
by rmoretti Thu, 2017-04-27 07:10 |
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Weighted scores?? by sizhang » Wed, 2018-12-05 15:22 |
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930 |
by sizhang Wed, 2018-12-05 15:22 |
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Ways to improve AbRelax performance? by Corvin » Tue, 2022-04-19 06:10 |
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1,626 |
by Corvin Thu, 2022-04-21 00:50 |
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Warnings during relax by cossio » Thu, 2018-10-11 14:42 |
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3,136 |
by rmoretti Mon, 2019-11-04 13:56 |
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Warning: Fold tree is not set properly for density scoring by ahansel » Mon, 2020-07-13 10:50 |
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1,244 |
by danpf Tue, 2020-07-14 10:27 |
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Warning messages in Interface analyzer output by Pernille » Wed, 2015-03-25 00:53 |
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4,368 |
by rmoretti Tue, 2015-03-31 08:20 |
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wallpaper symmetry definition file by aaj » Fri, 2016-02-26 08:40 |
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1,366 |
by aaj Fri, 2016-02-26 08:40 |
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VH-VL Orientation in antibody by sujigeorge1979 » Mon, 2019-06-17 01:23 |
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1,658 |
by jeliazkov Mon, 2019-06-17 06:03 |
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very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
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3,097 |
by attesor Tue, 2015-11-17 07:36 |
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variable length fragments for Ab initio by attesor » Wed, 2015-07-01 06:13 |
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6,747 |
by rmoretti Tue, 2015-08-18 16:47 |
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ValueError("Path %s does not exist!" % path_name) for rna_helix.py by kameisel » Wed, 2023-08-16 00:39 |
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by kameisel Wed, 2023-09-13 02:16 |
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using Rosetta to compute pH dependent binding? by JuliusSu » Sun, 2014-06-15 20:28 |
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5,206 |
by rmoretti Tue, 2014-06-17 08:51 |
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Using Rosetta Docking for nucleic acids by Adrien Guilhot » Thu, 2011-04-28 06:16 |
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4,966 |
by Adrien Guilhot Mon, 2014-04-21 06:47 |
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Using Rmsd RosettaScripts filter with alignment files by bjharris » Sun, 2020-11-08 15:51 |
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1,052 |
by rmoretti Sun, 2020-11-08 18:56 |
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Using residue patches in AbinitioRelax by kent » Fri, 2018-11-02 11:19 |
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1,823 |
by rmoretti Wed, 2018-11-21 15:40 |
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using piper-flexpepdock by syntekabio2019 » Thu, 2019-12-12 01:22 |
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1,186 |
by syntekabio2019 Thu, 2019-12-12 01:22 |
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Using MoveMap within Relax Application? by m_grisewood » Mon, 2012-08-13 12:21 |
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6,939 |
by m_grisewood Mon, 2014-04-21 06:47 |
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Using GlycanDock and the Antibody Affinity Maturation protocol. by tbelec » Mon, 2022-02-28 12:37 |
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1,025 |
by tbelec Mon, 2022-02-28 12:37 |
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Using different number of 9-mers (UPDATED) by JadAbbass » Mon, 2017-08-28 07:20 |
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1,846 |
by rmoretti Mon, 2017-09-04 10:33 |
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using DARC in rosetta by syntekabio2019 » Thu, 2019-12-12 01:27 |
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909 |
by syntekabio2019 Thu, 2019-12-12 01:27 |
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Using abinition to predict a new (previously unsolved) structure. by ac.research » Mon, 2017-01-09 00:59 |
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1,261 |
by ac.research Mon, 2017-01-09 00:59 |
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Use NMR ensemble in protein-protein docking? by cossio » Sun, 2015-09-13 07:57 |
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3,038 |
by cossio Tue, 2015-09-15 12:48 |
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Use membrane or non-membrane weights in RosettaCM for a hexon in virus capsid? by lanselibai » Sat, 2020-04-11 02:10 |
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903 |
by lanselibai Sat, 2020-04-11 02:10 |
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Use "loopmodel.linuxgccrelease" CCD to build missing residue positions by lanselibai » Sun, 2014-10-12 09:00 |
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3,376 |
by lanselibai Mon, 2014-10-13 10:10 |
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Usage of the TaskOperations "RestrictToCDRsAndNeighbors" by johnnytam100 » Wed, 2019-04-10 02:58 |
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1,513 |
by rmoretti Wed, 2019-07-10 10:10 |
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usage of score3 by Run » Sat, 2013-09-28 02:06 |
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16,500 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Urgent issue: Error with submitting a new Rosetta-Vienna RNP-ddG job by eyaaaan » Sun, 2022-08-07 22:03 |
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750 |
by eyaaaan Tue, 2022-08-09 21:59 |
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Up to date Vall database by JadAbbass » Sat, 2013-06-29 10:35 |
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5,649 |
by rmoretti Tue, 2017-06-20 09:02 |
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Unknown Element "SE" when generating NCAA params file containing selenium by liuwenxi » Thu, 2022-08-04 16:24 |
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1,037 |
by liuwenxi Fri, 2022-08-05 09:50 |
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UnfoldedStateEnergyCalculator MPI Error by colin.walsh.brown » Mon, 2017-11-13 09:43 |
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1,807 |
by smlewis Mon, 2017-11-13 10:43 |
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Unexpected Error with RosettaCM - by terry » Fri, 2019-02-22 14:26 |
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3,159 |
by rmoretti Fri, 2019-03-29 12:25 |
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Undesirable behaviour of PoseFromSFRBuilder regarding Hydrogen atoms by Corvin » Wed, 2020-12-02 04:00 |
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1,104 |
by rmoretti Wed, 2020-12-02 07:27 |
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Unable to understand fragment picking tutorial points. by Danielsebas » Thu, 2019-09-05 03:44 |
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2,812 |
by danpf Fri, 2019-09-06 11:29 |
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Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking) by snorp » Mon, 2014-04-14 13:01 |
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3,753 |
by jadolfbr Mon, 2014-05-12 10:41 |
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Unable to run Rosetta LoopModeling application by BDBorrillo » Tue, 2011-07-19 14:06 |
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5,329 |
by BDBorrillo Mon, 2014-04-21 06:47 |
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Unable to locate the "compute_ddg.py" file and running the RosettaMP protocol by Sajjad » Mon, 2022-11-28 14:09 |
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4,641 |
by Sajjad Wed, 2022-11-30 11:50 |
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unable to generate the span file with "mp_span_from_pdb.default.linuxgccrelease" from a PDB file by Sajjad » Wed, 2022-11-30 11:40 |
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3,915 |
by FJOM Wed, 2023-05-03 07:21 |
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Two questions on the RosettaScripts flexbb-interfacedesign.xml by johnnytam100 » Fri, 2019-03-15 04:54 |
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1,597 |
by rmoretti Fri, 2019-03-29 09:58 |
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trRosetta protocol Segmentation Fault by nc-ring » Wed, 2021-04-28 11:57 |
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2,423 |
by nc-ring Tue, 2021-05-04 12:26 |
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trRosetta - Nan occuring in Hbond calculation by y_atsmonraz » Mon, 2021-10-04 09:16 |
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1,045 |
by shivarawat115 Mon, 2022-04-11 16:10 |
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Trouble running MPI docking protocol, please help! by Rob_Barringer » Tue, 2020-08-18 06:40 |
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2,502 |
by Rob_Barringer Fri, 2020-09-25 05:45 |
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Trouble running Enzyme Design application by danaitop » Thu, 2016-08-11 13:34 |
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2,661 |
by rmoretti Mon, 2016-09-05 11:10 |
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trouble in floppytail modelling by ytao » Thu, 2013-06-27 13:15 |
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2,378 |
by ytao Mon, 2014-04-21 06:48 |
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Trouble enforcing a disulfide in loop building by chelsell » Sun, 2015-05-10 16:31 |
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3,558 |
by chelsell Wed, 2015-05-27 14:36 |
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Trehalose by jpfuenzalidawx » Thu, 2022-09-08 00:49 |
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675 |
by jpfuenzalidawx Thu, 2022-09-08 00:49 |
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Transmembrane helix fold-and-dock? by sarah_b » Tue, 2020-05-12 02:09 |
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2,140 |
by jkleman Tue, 2020-05-19 15:02 |
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Translate mover chain X doesnot exist. by surya » Thu, 2020-07-09 08:36 |
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3,114 |
by rmoretti Tue, 2020-07-14 10:54 |
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Total score problems with high-res ddg_monomer by jklesmith » Tue, 2015-03-10 15:54 |
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3,464 |
by jennifer Fri, 2015-03-27 05:56 |
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Topobuilder segmentation fault by tatsiana.bylund » Mon, 2021-08-09 07:10 |
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1,090 |
by tatsiana.bylund Mon, 2021-08-09 07:10 |
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too many constraints result in no output pose by Yao Wu » Sun, 2012-11-18 23:45 |
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5,956 |
by smlewis Mon, 2014-04-21 06:47 |
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to create the template pdb file by benniu2004 » Sat, 2012-12-29 23:04 |
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8,403 |
by benniu2004 Mon, 2014-04-21 06:47 |
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Threading with Ligand by ekwan » Thu, 2018-12-06 15:10 |
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1,493 |
by rmoretti Fri, 2019-03-29 13:21 |
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Threading a sequence onto a template with ligands/metal ions included by ajkal » Wed, 2017-04-19 11:53 |
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3,423 |
by ahmadkhalifa Sun, 2019-03-31 23:27 |
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Thread target sequence by duz » Thu, 2021-04-01 10:09 |
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1,900 |
by duz Mon, 2021-05-03 07:50 |
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The Usage of motifgraft by Sunyp_IM » Sun, 2017-11-19 20:22 |
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3,254 |
by Sunyp_IM Mon, 2017-11-20 19:20 |
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The usage of antibody_H3.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 22:50 |
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1,802 |
by Sunyp_IM Thu, 2020-06-04 08:20 |
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The relax qustion of Rosetta VIP by asbelx » Mon, 2019-06-10 07:52 |
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1,344 |
by rmoretti Mon, 2019-06-24 14:42 |
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The question of ligand docking with constraints by asbelx » Mon, 2018-06-11 09:39 |
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3,056 |
by rmoretti Thu, 2018-06-28 12:58 |
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The question about ligand score function by asbelx » Sun, 2018-06-17 02:07 |
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3,040 |
by asbelx Mon, 2018-06-18 22:34 |
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The problems on pdb renumbering by Sunyp_IM » Sun, 2017-08-20 06:39 |
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2,097 |
by Sunyp_IM Sun, 2017-08-20 06:39 |
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the meaning of total_score in docking by libai2098 » Mon, 2011-03-21 05:46 |
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4,464 |
by libai2098 Mon, 2014-04-21 06:47 |
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the flexpepdock refinement and ab-initio by tfliu » Mon, 2013-12-23 19:17 |
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6,194 |
by tfliu Mon, 2014-04-21 06:48 |
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the extracted pdb file by benniu2004 » Fri, 2013-01-04 17:55 |
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13,433 |
by benniu2004 Mon, 2014-04-21 06:47 |
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The energy terms in InterfaceAnalyzer by Sunyp_IM » Tue, 2021-11-02 18:43 |
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1,301 |
by zivben Sat, 2021-11-13 04:49 |
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The difference between the H1 regions of modeled camelid antibody and the crystal structure. by Sunyp_IM » Sun, 2020-06-07 02:34 |
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1,240 |
by nannemdp Sun, 2020-06-07 08:01 |
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the ddg of mutant is same as the wt by deepanshuiitb » Wed, 2015-03-04 11:56 |
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6,462 |
by jadolfbr Tue, 2015-04-07 10:50 |
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The confussion about an example in tutorial in Rosetta Virtual Workshop 2020 by ldx022 » Tue, 2022-11-29 04:58 |
3 |
4,089 |
by ldx022 Tue, 2022-11-29 08:38 |
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terminal amino acids of gap has incomplete valency by malkeet.singh » Wed, 2017-11-29 05:20 |
6 |
4,237 |
by rmoretti Fri, 2017-12-01 12:05 |
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Template/Input length mismatch error during RosettaCM by marinok » Mon, 2020-05-04 13:12 |
4 |
2,528 |
by marinok Mon, 2020-05-11 12:48 |
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Syntax to extract PDB files from a silent file by lanselibai » Fri, 2014-09-26 13:48 |
1 |
3,832 |
by lanselibai Fri, 2014-09-26 14:58 |
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