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Rosetta 3 - Applications

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
0
8,034 by admin
Fri, 2015-09-04 16:17
Normal topic Pepspec - sequence sampling
by almeida85 » Thu, 2022-06-23 04:05
0
23 by almeida85
Thu, 2022-06-23 05:50
Normal topic ERROR: Assertion `static_cast< size_type >( i - l_ ) < super::size()` failed. ERROR:: Exit from: src/utility/vectorL.hh line: 42
by yliang20 » Wed, 2022-06-15 22:22
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46 by yliang20
Wed, 2022-06-15 22:22
Normal topic Could not open file /Rosetta/rosetta_bin_linux_2020.08.61146_bundle/main/database/citations/rosetta_citations
by yliang20 » Wed, 2022-06-15 11:26
2
57 by yliang20
Wed, 2022-06-15 13:46
Normal topic Enzyme Design Not Editing Structure
by liuwenxi » Wed, 2022-05-18 10:12
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61 by liuwenxi
Wed, 2022-05-18 10:12
Normal topic minimize_ppi.mpi.linuxgccrelease doesn't use jd2?
by e3lm » Tue, 2022-05-17 11:58
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67 by e3lm
Tue, 2022-05-17 11:58
Normal topic Disulfidize- "Extra content at the end of the document"
by ldlamini » Tue, 2022-05-17 02:37
1
67 by rmoretti
Tue, 2022-05-17 07:29
Normal topic Dimeric interface redesign
by kjs1728 » Mon, 2022-05-02 21:57
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68 by kjs1728
Mon, 2022-05-02 21:57
Normal topic IL-2 gets better binding with beta / gamma
by tonycheng1688 » Wed, 2022-05-25 10:23
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69 by tonycheng1688
Wed, 2022-05-25 10:23
Normal topic Local docking- should I use KIC?
by seayoung lee » Fri, 2022-05-27 02:45
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81 by seayoung lee
Fri, 2022-05-27 02:45
Normal topic Params for a stapled helix peptide
by e3lm » Thu, 2022-05-26 12:55
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82 by e3lm
Thu, 2022-05-26 12:55
Normal topic about “protein mimic designer”
by sia » Wed, 2022-04-27 19:59
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83 by sia
Wed, 2022-04-27 19:59
Normal topic Pepspec error
by almeida85 » Mon, 2022-05-02 04:07
1
91 by almeida85
Mon, 2022-05-02 05:05
Normal topic problem in using "zinc_site_redesign" tool
by Isomerase » Mon, 2022-03-28 01:19
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93 by Isomerase
Mon, 2022-03-28 01:19
Normal topic Segmentation Fault in Rosetta CM Hybridize
by yliang20 » Mon, 2022-06-06 17:25
2
97 by yliang20
Tue, 2022-06-07 08:36
Normal topic Flex_ddG突变设计
by wangtao » Thu, 2022-05-05 02:46
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103 by wangtao
Thu, 2022-05-05 02:46
Normal topic snugdock run error: Sequence for partner1 does not match first member of ensemble1
by pagumaaaaa » Fri, 2022-03-25 01:21
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103 by pagumaaaaa
Fri, 2022-03-25 01:21
Normal topic Relax evaluates protein-DNA complexes?
by pablogalazdavison » Thu, 2022-05-12 12:05
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137 by pablogalazdavison
Fri, 2022-05-20 12:27
Normal topic simple_cycpep_predict thioether_lariat option
by Ken » Mon, 2022-03-14 15:14
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141 by Ken
Mon, 2022-03-14 15:14
Normal topic Rosetta Matcher not recognizing protonation forms of CST files like CYZ, HIS_D, etc
by Hirbond » Tue, 2022-03-01 13:16
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178 by Hirbond
Tue, 2022-03-01 13:16
Normal topic Ways to improve AbRelax performance?
by Corvin » Tue, 2022-04-19 06:10
2
179 by Corvin
Thu, 2022-04-21 00:50
Normal topic Modelling at defined pH - for pmutscan - pH:mode not working
by cagfa1 » Tue, 2022-03-15 04:05
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181 by Rituparna_Saman...
Wed, 2022-03-23 11:21
Normal topic simple_cycpep_predict with N-term acetylation
by Ken » Fri, 2021-12-17 09:49
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191 by Ken
Fri, 2021-12-17 09:49
Normal topic Protein design: Ligand binding between two units of a homodimer
by chemotaxis_123 » Sun, 2022-01-02 16:01
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198 by chemotaxis_123
Sun, 2022-01-02 16:01
Normal topic How to apply cartesian_ddg to multi-metric enzyme?
by Wang Zhe » Wed, 2021-12-08 10:07
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199 by Wang Zhe
Wed, 2021-12-08 10:07
Normal topic Using GlycanDock and the Antibody Affinity Maturation protocol.
by tbelec » Mon, 2022-02-28 12:37
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203 by tbelec
Mon, 2022-02-28 12:37
Normal topic Remodel's problem in treatment with non-protein residues
by Corvin » Mon, 2021-12-13 09:07
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206 by Corvin
Mon, 2021-12-13 09:07
Normal topic Rosetta DARc suboptimal dockings
by ddhoyo » Mon, 2021-10-11 06:18
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221 by ddhoyo
Mon, 2021-10-11 06:18
Normal topic charge grid in rosetta ligand docking using rosetta script
by syntekabio2019 » Mon, 2022-01-17 23:53
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225 by syntekabio2019
Mon, 2022-01-17 23:53
Normal topic I need help with cst file the paper: De Novo Computational Design of Retro-Aldol Enzymes
by Wenithor » Thu, 2022-01-06 12:20
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226 by Wenithor
Thu, 2022-01-06 12:20
Normal topic Segfault error while running MR Rosetta in Phenix
by memilton » Thu, 2021-12-16 09:09
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231 by memilton
Thu, 2021-12-16 09:09
Normal topic Symmetry definition file versions
by Jeff Qu » Tue, 2021-09-28 09:53
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244 by Jeff Qu
Tue, 2021-09-28 09:53
Normal topic ligand dock into HEM containg pdb
by syntekabio2019 » Thu, 2022-01-20 03:05
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244 by syntekabio2019
Thu, 2022-01-20 03:05
Normal topic How do I change the default Compiler for Rosetta?
by pagumaaaaa » Wed, 2022-03-16 00:23
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250 by pagumaaaaa
Thu, 2022-03-24 22:40
Normal topic Linker Building in scFv
by sam_dc » Sat, 2021-10-09 05:38
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253 by sam_dc
Sat, 2021-10-09 05:38
Normal topic Generating the 3-mer and 9-mer fragments
by Prasoon » Wed, 2022-02-09 09:04
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258 by Prasoon
Wed, 2022-02-09 09:04
Normal topic FastRelaxMover parameters for antibody-antigen interaction analysis
by samuel_k » Thu, 2022-01-27 01:08
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266 by samuel_k
Thu, 2022-01-27 01:08
Normal topic FlexPepDock ab initio: behavior without fragment files
by nrollins » Mon, 2021-07-26 14:16
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267 by nrollins
Mon, 2021-07-26 14:16
Normal topic SecundaryStructure Filter
by Soler » Sun, 2021-11-21 22:20
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268 by Soler
Sun, 2021-11-21 22:20
Normal topic constraining different chains together in rosetta_cm
by y_atsmonraz » Thu, 2021-11-18 02:59
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272 by y_atsmonraz
Thu, 2021-11-18 03:01
Normal topic Repacker vs minimization
by Elijah_Hix » Fri, 2021-07-02 07:25
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272 by Elijah_Hix
Fri, 2021-07-02 07:25
Normal topic trRosetta - Nan occuring in Hbond calculation
by y_atsmonraz » Mon, 2021-10-04 09:16
1
276 by shivarawat115
Mon, 2022-04-11 16:10
Normal topic ERROR: APBS failed to generate the result file.
by bhavranek » Sat, 2021-12-18 11:01
1
280 by bhavranek
Sun, 2021-12-26 21:05
Normal topic Relax in membrane pull my protein out of the membrane
by Martin Floor » Wed, 2022-01-26 07:46
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283 by Martin Floor
Wed, 2022-01-26 07:46
Normal topic Can anybody suggests some flags to run Rifdock?
by Hyunmi Song » Sun, 2022-01-23 16:45
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283 by Hyunmi Song
Sun, 2022-01-23 16:45
Normal topic Problems with waters in CoupledMoves application
by Corvin » Tue, 2021-11-16 07:16
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283 by Corvin
Tue, 2021-11-16 07:22
Normal topic [LoopModelerMover] ERROR: Can't build a fold tree from a loop with an unspecified cut point.
by dgm3 » Sun, 2021-12-26 18:32
1
287 by dgm3
Fri, 2021-12-31 17:42
Normal topic connecting rna strands together
by y_atsmonraz » Tue, 2021-11-09 05:42
1
290 by y_atsmonraz
Thu, 2021-11-11 04:51
Normal topic RosettaDock 4.0 ambiguous ERROR
by sam_dc » Fri, 2022-03-18 09:36
3
302 by rmoretti
Tue, 2022-03-22 09:10
Normal topic small ligand docking in Ubuntu 20.04, please help
by guowuchen » Sun, 2022-03-06 18:12
2
303 by guowuchen
Mon, 2022-03-07 23:34
Normal topic Error reading in/out glycosylated silent file - "Can't create a polymer bond after residue due to incompatible type"
by amorin » Mon, 2021-09-27 12:16
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305 by amorin
Mon, 2021-09-27 12:16
Normal topic FlexPepDock bug? Constraints do not appear in total_score?
by nrollins » Mon, 2021-07-26 14:29
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315 by nrollins
Mon, 2021-07-26 14:29
Normal topic clashes created with enzdes
by listofdina » Mon, 2021-08-02 06:51
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340 by listofdina
Mon, 2021-08-02 06:51
Normal topic C-termini remodelling of dimeric structure removes second chain
by LeonhardJS » Wed, 2021-10-13 06:23
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348 by LeonhardJS
Fri, 2021-11-12 01:20
Normal topic What is an SS0 predictor?
by ojmel » Fri, 2021-04-02 14:25
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348 by ojmel
Mon, 2021-04-12 07:50
Normal topic Issues with modifying dock.xml for multiple ligand docking
by DGR95 » Fri, 2021-05-14 12:51
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354 by DGR95
Fri, 2021-05-14 12:51
Normal topic Segfault with Pepspec
by almeida85 » Thu, 2021-02-11 02:56
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358 by almeida85
Thu, 2021-02-11 02:56
Normal topic Writing down properties for new atom types
by Corvin » Tue, 2021-01-12 04:30
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359 by Corvin
Wed, 2021-01-13 04:00
Normal topic Patch to impose tetrahedral geometry on backbone O atom
by georg » Thu, 2021-04-08 09:30
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360 by georg
Thu, 2021-04-08 09:31
Normal topic FastRelax Refinement severe clashes
by Victor Tobiasson » Thu, 2021-05-20 06:55
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371 by Victor Tobiasson
Thu, 2021-05-20 06:55
Normal topic PDB Clustering
by code_Monkey » Mon, 2021-04-05 10:40
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382 by code_Monkey
Mon, 2021-04-05 10:40
Normal topic antibody - sequence position requested was 0
by jremmel » Mon, 2021-09-27 12:26
1
383 by nannemdp
Mon, 2021-09-27 14:22
Normal topic multi ligand docking using rosetta script
by syntekabio2019 » Tue, 2021-04-13 19:31
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387 by syntekabio2019
Tue, 2021-04-13 19:31
Normal topic flexpepdcok of lipid conjugated peptide with glyco protein.
by ravi.thakkkar369 » Fri, 2020-12-18 13:00
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395 by ravi.thakkkar369
Fri, 2020-12-18 13:00
Normal topic Question with rosetta AbPredict tutorial
by terabithia2011 » Mon, 2021-01-25 09:24
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396 by terabithia2011
Mon, 2021-01-25 09:24
Normal topic Ab Initio folding with HEM ligand molecule
by jseco » Fri, 2021-03-05 06:49
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399 by jseco
Mon, 2021-03-08 03:40
Normal topic metalloprotein ab initio with glutamic acid
by inorgchem » Tue, 2020-06-16 20:45
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404 by inorgchem
Tue, 2020-06-16 20:45
Normal topic Design of multimeric protein
by ldlamini » Mon, 2021-01-11 07:23
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404 by ldlamini
Mon, 2021-01-11 07:23
Normal topic Bug Report - Encoding issue
by daniloboskovic » Tue, 2020-08-04 07:02
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405 by daniloboskovic
Tue, 2020-08-04 07:02
Normal topic The energy terms in InterfaceAnalyzer
by Sunyp_IM » Tue, 2021-11-02 18:43
2
411 by zivben
Sat, 2021-11-13 04:49
Normal topic hpatch commands and how to identify patches
by Bianca Oliva » Thu, 2021-04-29 04:02
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416 by Bianca Oliva
Thu, 2021-04-29 04:02
Normal topic Creating fragment files for proteins less than 27 aa in length
by Poladu » Tue, 2021-01-26 07:50
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419 by Poladu
Tue, 2021-01-26 07:50
Normal topic Pepspec Anchor Dock
by Soler » Wed, 2020-09-16 19:08
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422 by Soler
Wed, 2020-09-16 19:08
Normal topic Modelling humanized camelid like antibody
by terabithia2011 » Tue, 2021-01-26 10:12
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423 by terabithia2011
Tue, 2021-01-26 10:12
Normal topic clustering output file has few structures
by fabiotrovato » Mon, 2020-08-17 11:37
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433 by fabiotrovato
Mon, 2020-08-17 11:37
Normal topic DockingProtocol
by Soler » Fri, 2022-02-11 00:12
3
435 by gezmi
Tue, 2022-02-15 21:47
Normal topic Stepwise Monte Carlo - errors with ResidueTypeSet and Disulfides
by user42 » Wed, 2021-07-21 20:34
1
436 by everyday847
Fri, 2021-07-30 13:26
Normal topic Fewer than expected structures in clustering output
by fabiotrovato » Thu, 2020-08-20 00:59
0
445 by fabiotrovato
Thu, 2020-08-20 00:59
Normal topic RosettaAntibody - No matching templates for CDR1
by agctomer » Tue, 2021-01-19 22:45
0
446 by agctomer
Tue, 2021-01-19 22:45
Normal topic General question regarding ligand-docking
by Alison_Yajie » Thu, 2020-05-07 09:48
0
451 by Alison_Yajie
Thu, 2020-05-07 09:48
Normal topic zero standard deviation of I_sc in protein-protein docking
by rohi » Fri, 2020-07-03 22:19
0
451 by rohi
Fri, 2020-07-03 22:20
Normal topic Side-chain grafting at the fixed protein and position
by Kazu » Wed, 2020-05-20 08:49
0
454 by Kazu
Wed, 2020-05-20 08:49
Normal topic duplex RNA
by amir_tagh » Thu, 2021-08-05 06:34
1
458 by everyday847
Mon, 2021-08-16 10:43
Normal topic RemodelMover and Input Pose
by ozyo » Tue, 2020-12-29 09:41
0
465 by ozyo
Tue, 2020-12-29 09:41
Normal topic How many iterations of remodel is enough?
by daniloboskovic » Thu, 2020-07-16 08:07
0
473 by daniloboskovic
Thu, 2020-07-16 08:14
Normal topic Python2 script in Rosetta3.13
by ddhoyo » Wed, 2021-09-15 04:05
1
478 by matteoferla
Wed, 2021-09-15 06:04
Normal topic Scoring after HBNet
by HHL_SIUC » Wed, 2020-07-01 10:49
0
480 by HHL_SIUC
Wed, 2020-07-01 10:49
Normal topic Residue selector
by Alison_Yajie » Wed, 2020-06-17 19:57
0
482 by Alison_Yajie
Thu, 2020-06-18 09:47
Normal topic Global Docking with carbohydrates
by ChiauShu » Sat, 2020-08-22 20:16
0
484 by ChiauShu
Sat, 2020-08-22 20:16
Normal topic Help with enzyme design files
by Wenithor » Thu, 2021-04-29 10:33
1
487 by rmoretti
Thu, 2021-04-29 10:44
Normal topic RosettaCM/hybridize
by kywei » Wed, 2021-04-28 09:56
1
488 by vmulligan
Wed, 2021-04-28 12:59
Normal topic Blast error for rosetta antibody: No argument value given for Query file
by dngusdnr1 » Tue, 2021-06-08 17:30
1
490 by taylorjones
Wed, 2021-06-09 16:38
Normal topic Ligand docking with constraint
by Alison_Yajie » Wed, 2020-06-24 12:34
0
494 by Alison_Yajie
Wed, 2020-06-24 12:34
Normal topic appropriate sampling for protein docking to a multi chain assembly
by SWM » Fri, 2020-01-24 11:22
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494 by SWM
Fri, 2020-01-24 11:22
Normal topic core.optimization.LineMinimizer: [ ERROR ] Inaccurate G!
by aralz » Thu, 2021-02-11 00:46
0
495 by aralz
Thu, 2021-02-11 00:46
Normal topic Does antibody_numbering_converter support camelid antibody?
by mxp » Tue, 2020-07-07 01:21
0
495 by mxp
Tue, 2020-07-07 01:21
Normal topic "Residue 7 was disulfide bonded but had no partner" with antibody.linuxgccrelease
by Sunyp_IM » Thu, 2020-06-04 05:53
0
497 by Sunyp_IM
Thu, 2020-06-04 05:54
Normal topic Metal Ion in symmetric design
by tschiex » Wed, 2020-07-08 05:28
0
500 by tschiex
Wed, 2020-07-08 05:28
Normal topic RosettaAntibody3 - How can I model an extended H3?
by brspurri » Fri, 2020-08-28 09:11
0
500 by brspurri
Fri, 2020-08-28 09:11
Normal topic Topobuilder segmentation fault
by tatsiana.bylund » Mon, 2021-08-09 07:10
0
505 by tatsiana.bylund
Mon, 2021-08-09 07:10

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