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Rosetta 3 - Applications
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FAQ by admin » Mon, 2010-08-30 04:18 |
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by admin Fri, 2015-09-04 16:17 |
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prepack - residue count fails by xfradera » Fri, 2023-01-27 06:36 |
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40 |
by xfradera Fri, 2023-01-27 06:36 |
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Trehalose by jpfuenzalidawx » Thu, 2022-09-08 00:49 |
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256 |
by jpfuenzalidawx Thu, 2022-09-08 00:49 |
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Prepacking a macrocycle for docking / preserving cyclization by almeida85 » Thu, 2022-09-08 06:54 |
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290 |
by almeida85 Thu, 2022-09-08 06:54 |
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Docking HeparinSulfate to proteins using GlycanDock by GebauerJ » Tue, 2022-08-16 07:44 |
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297 |
by GebauerJ Tue, 2022-08-16 07:44 |
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Include MHC alpha helices in loop modelling protocol for pMHC complex by Roberto » Thu, 2022-08-04 07:22 |
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300 |
by Roberto Thu, 2022-08-04 07:22 |
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pMHC modelling by Roberto » Thu, 2022-08-04 07:11 |
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301 |
by Roberto Thu, 2022-08-04 07:11 |
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CS-Rosetta cofactor by martongadanecz » Wed, 2022-08-03 01:05 |
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313 |
by martongadanecz Wed, 2022-08-03 01:05 |
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Per residue total score by johnnytam100 » Wed, 2022-07-13 21:57 |
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313 |
by johnnytam100 Wed, 2022-07-13 21:57 |
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Benchmarking Rosetta DDG Methods by sareeves96 » Fri, 2022-07-29 09:55 |
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318 |
by sareeves96 Fri, 2022-07-29 09:55 |
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Error with RNA_denovo by zmfowler » Thu, 2022-07-14 05:34 |
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325 |
by zmfowler Thu, 2022-07-14 05:34 |
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Error with RoseTTAFold by sc19 » Thu, 2022-07-14 03:40 |
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338 |
by sc19 Thu, 2022-07-14 03:40 |
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Urgent issue: Error with submitting a new Rosetta-Vienna RNP-ddG job by eyaaaan » Sun, 2022-08-07 22:03 |
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340 |
by eyaaaan Tue, 2022-08-09 21:59 |
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Ligand Docking with ROSETTA by sc19 » Thu, 2022-07-14 01:32 |
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341 |
by sc19 Thu, 2022-07-14 01:34 |
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Macrocycle from a C-terminal amidated peptide by almeida85 » Thu, 2022-08-18 07:53 |
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341 |
by almeida85 Thu, 2022-08-18 07:53 |
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Pepspec - sequence sampling by almeida85 » Thu, 2022-06-23 04:05 |
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344 |
by almeida85 Thu, 2022-06-23 05:50 |
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problem in using "zinc_site_redesign" tool by Isomerase » Mon, 2022-03-28 01:19 |
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351 |
by Isomerase Mon, 2022-03-28 01:19 |
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Nanobody design by chandana » Tue, 2022-08-09 20:36 |
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352 |
by chandana Tue, 2022-08-09 20:36 |
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Enzyme Design Not Editing Structure by liuwenxi » Wed, 2022-05-18 10:12 |
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361 |
by liuwenxi Wed, 2022-05-18 10:12 |
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Dimeric interface redesign by kjs1728 » Mon, 2022-05-02 21:57 |
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372 |
by kjs1728 Mon, 2022-05-02 21:57 |
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Params for a stapled helix peptide by e3lm » Thu, 2022-05-26 12:55 |
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by e3lm Thu, 2022-05-26 12:55 |
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SnugDock Partners parameter by tyang39 » Fri, 2022-07-08 10:02 |
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377 |
by rmoretti Fri, 2022-07-08 10:27 |
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about “protein mimic designer” by sia » Wed, 2022-04-27 19:59 |
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378 |
by sia Wed, 2022-04-27 19:59 |
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shape complementarity by holdenj » Fri, 2022-07-15 13:24 |
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379 |
by rmoretti Fri, 2022-07-15 13:50 |
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minimize_ppi.mpi.linuxgccrelease doesn't use jd2? by e3lm » Tue, 2022-05-17 11:58 |
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390 |
by e3lm Tue, 2022-05-17 11:58 |
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IL-2 gets better binding with beta / gamma by tonycheng1688 » Wed, 2022-05-25 10:23 |
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394 |
by tonycheng1688 Wed, 2022-05-25 10:23 |
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Local docking- should I use KIC? by seayoung lee » Fri, 2022-05-27 02:45 |
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396 |
by seayoung lee Fri, 2022-05-27 02:45 |
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simple_cycpep_predict thioether_lariat option by Ken » Mon, 2022-03-14 15:14 |
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406 |
by Ken Mon, 2022-03-14 15:14 |
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Repacker vs minimization by Elijah_Hix » Fri, 2021-07-02 07:25 |
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410 |
by Elijah_Hix Fri, 2021-07-02 07:25 |
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snugdock run error: Sequence for partner1 does not match first member of ensemble1 by pagumaaaaa » Fri, 2022-03-25 01:21 |
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412 |
by pagumaaaaa Fri, 2022-03-25 01:21 |
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Grafting using antibody.mpi.linuxgccrelease and specifying custom template which doesnt have pdb id. by SubhaK » Wed, 2023-01-18 23:33 |
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422 |
by SubhaK Wed, 2023-01-18 23:33 |
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FlexPepDock ab initio: behavior without fragment files by nrollins » Mon, 2021-07-26 14:16 |
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by nrollins Mon, 2021-07-26 14:16 |
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Expected density by GabrielDucrocq » Thu, 2022-07-14 06:38 |
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426 |
by matteoferla Wed, 2022-07-20 10:50 |
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Flex_ddG突变设计 by wangtao » Thu, 2022-05-05 02:46 |
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by wangtao Thu, 2022-05-05 02:46 |
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Pepspec error by almeida85 » Mon, 2022-05-02 04:07 |
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457 |
by almeida85 Mon, 2022-05-02 05:05 |
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Rosetta DARc suboptimal dockings by ddhoyo » Mon, 2021-10-11 06:18 |
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by ddhoyo Mon, 2021-10-11 06:18 |
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Old Knotfind algorithm by Martin Floor » Thu, 2022-09-22 07:28 |
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462 |
by rmoretti Fri, 2022-09-23 09:38 |
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Segfault with Pepspec by almeida85 » Thu, 2021-02-11 02:56 |
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by almeida85 Thu, 2021-02-11 02:56 |
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Unknown Element "SE" when generating NCAA params file containing selenium by liuwenxi » Thu, 2022-08-04 16:24 |
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471 |
by liuwenxi Fri, 2022-08-05 09:50 |
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FlexPepDock bug? Constraints do not appear in total_score? by nrollins » Mon, 2021-07-26 14:29 |
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by nrollins Mon, 2021-07-26 14:29 |
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ERROR: Assertion `static_cast< size_type >( i - l_ ) < super::size()` failed. ERROR:: Exit from: src/utility/vectorL.hh line: 42 by yliang20 » Wed, 2022-06-15 22:22 |
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by adriancmf25 Thu, 2022-07-28 02:09 |
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Rosetta Matcher not recognizing protonation forms of CST files like CYZ, HIS_D, etc by Hirbond » Tue, 2022-03-01 13:16 |
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477 |
by Hirbond Tue, 2022-03-01 13:16 |
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What is an SS0 predictor? by ojmel » Fri, 2021-04-02 14:25 |
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by ojmel Mon, 2021-04-12 07:50 |
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Protein design: Ligand binding between two units of a homodimer by chemotaxis_123 » Sun, 2022-01-02 16:01 |
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by chemotaxis_123 Sun, 2022-01-02 16:01 |
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How to apply cartesian_ddg to multi-metric enzyme? by Wang Zhe » Wed, 2021-12-08 10:07 |
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486 |
by Wang Zhe Wed, 2021-12-08 10:07 |
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Writing down properties for new atom types by Corvin » Tue, 2021-01-12 04:30 |
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487 |
by Corvin Wed, 2021-01-13 04:00 |
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Remodel's problem in treatment with non-protein residues by Corvin » Mon, 2021-12-13 09:07 |
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490 |
by Corvin Mon, 2021-12-13 09:07 |
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simple_cycpep_predict with N-term acetylation by Ken » Fri, 2021-12-17 09:49 |
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494 |
by Ken Fri, 2021-12-17 09:49 |
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Disulfidize- "Extra content at the end of the document" by ldlamini » Tue, 2022-05-17 02:37 |
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498 |
by rmoretti Tue, 2022-05-17 07:29 |
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RIFdocking：Unable to locate database file chemical/residue_type_sets/fa_standard/residue_types/ by sia » Tue, 2022-08-02 20:06 |
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501 |
by SeongRyeong Go Mon, 2022-08-15 18:31 |
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Using GlycanDock and the Antibody Affinity Maturation protocol. by tbelec » Mon, 2022-02-28 12:37 |
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503 |
by tbelec Mon, 2022-02-28 12:37 |
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metalloprotein ab initio with glutamic acid by inorgchem » Tue, 2020-06-16 20:45 |
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505 |
by inorgchem Tue, 2020-06-16 20:45 |
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Patch to impose tetrahedral geometry on backbone O atom by georg » Thu, 2021-04-08 09:30 |
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by georg Thu, 2021-04-08 09:31 |
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Issues with modifying dock.xml for multiple ligand docking by DGR95 » Fri, 2021-05-14 12:51 |
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509 |
by DGR95 Fri, 2021-05-14 12:51 |
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flexpepdcok of lipid conjugated peptide with glyco protein. by ravi.thakkkar369 » Fri, 2020-12-18 13:00 |
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512 |
by ravi.thakkkar369 Fri, 2020-12-18 13:00 |
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FastRelax Refinement severe clashes by Victor Tobiasson » Thu, 2021-05-20 06:55 |
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512 |
by Victor Tobiasson Thu, 2021-05-20 06:55 |
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clashes created with enzdes by listofdina » Mon, 2021-08-02 06:51 |
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515 |
by listofdina Mon, 2021-08-02 06:51 |
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Symmetry definition file versions by Jeff Qu » Tue, 2021-09-28 09:53 |
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517 |
by Jeff Qu Tue, 2021-09-28 09:53 |
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PDB Clustering by code_Monkey » Mon, 2021-04-05 10:40 |
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by code_Monkey Mon, 2021-04-05 10:40 |
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Linker Building in scFv by sam_dc » Sat, 2021-10-09 05:38 |
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520 |
by sam_dc Sat, 2021-10-09 05:38 |
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Bug Report - Encoding issue by daniloboskovic » Tue, 2020-08-04 07:02 |
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520 |
by daniloboskovic Tue, 2020-08-04 07:02 |
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charge grid in rosetta ligand docking using rosetta script by syntekabio2019 » Mon, 2022-01-17 23:53 |
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522 |
by syntekabio2019 Mon, 2022-01-17 23:53 |
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I need help with cst file the paper: De Novo Computational Design of Retro-Aldol Enzymes by Wenithor » Thu, 2022-01-06 12:20 |
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524 |
by Wenithor Thu, 2022-01-06 12:20 |
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Ab Initio folding with HEM ligand molecule by jseco » Fri, 2021-03-05 06:49 |
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527 |
by jseco Mon, 2021-03-08 03:40 |
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Could not open file /Rosetta/rosetta_bin_linux_2020.08.61146_bundle/main/database/citations/rosetta_citations by yliang20 » Wed, 2022-06-15 11:26 |
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529 |
by yliang20 Wed, 2022-06-15 13:46 |
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SecundaryStructure Filter by Soler » Sun, 2021-11-21 22:20 |
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530 |
by Soler Sun, 2021-11-21 22:20 |
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Snugdock Error: The sequence position requested was greater than the number of residues by stannowitz » Tue, 2023-01-17 07:37 |
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533 |
by stannowitz Tue, 2023-01-17 23:48 |
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multi ligand docking using rosetta script by syntekabio2019 » Tue, 2021-04-13 19:31 |
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536 |
by syntekabio2019 Tue, 2021-04-13 19:31 |
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constraining different chains together in rosetta_cm by y_atsmonraz » Thu, 2021-11-18 02:59 |
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542 |
by y_atsmonraz Thu, 2021-11-18 03:01 |
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Question with rosetta AbPredict tutorial by terabithia2011 » Mon, 2021-01-25 09:24 |
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543 |
by terabithia2011 Mon, 2021-01-25 09:24 |
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FastRelaxMover parameters for antibody-antigen interaction analysis by samuel_k » Thu, 2022-01-27 01:08 |
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546 |
by samuel_k Thu, 2022-01-27 01:08 |
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clustering output file has few structures by fabiotrovato » Mon, 2020-08-17 11:37 |
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549 |
by fabiotrovato Mon, 2020-08-17 11:37 |
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Pepspec Anchor Dock by Soler » Wed, 2020-09-16 19:08 |
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553 |
by Soler Wed, 2020-09-16 19:08 |
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Fewer than expected structures in clustering output by fabiotrovato » Thu, 2020-08-20 00:59 |
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554 |
by fabiotrovato Thu, 2020-08-20 00:59 |
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Segfault error while running MR Rosetta in Phenix by memilton » Thu, 2021-12-16 09:09 |
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555 |
by memilton Thu, 2021-12-16 09:09 |
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ligand dock into HEM containg pdb by syntekabio2019 » Thu, 2022-01-20 03:05 |
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555 |
by syntekabio2019 Thu, 2022-01-20 03:05 |
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Segmentation Fault in Rosetta CM Hybridize by yliang20 » Mon, 2022-06-06 17:25 |
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555 |
by yliang20 Tue, 2022-06-07 08:36 |
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Generating the 3-mer and 9-mer fragments by Prasoon » Wed, 2022-02-09 09:04 |
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557 |
by Prasoon Wed, 2022-02-09 09:04 |
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Problems with waters in CoupledMoves application by Corvin » Tue, 2021-11-16 07:16 |
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559 |
by Corvin Tue, 2021-11-16 07:22 |
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Modelling humanized camelid like antibody by terabithia2011 » Tue, 2021-01-26 10:12 |
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560 |
by terabithia2011 Tue, 2021-01-26 10:12 |
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Error reading in/out glycosylated silent file - "Can't create a polymer bond after residue due to incompatible type" by amorin » Mon, 2021-09-27 12:16 |
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560 |
by amorin Mon, 2021-09-27 12:16 |
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Creating fragment files for proteins less than 27 aa in length by Poladu » Tue, 2021-01-26 07:50 |
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563 |
by Poladu Tue, 2021-01-26 07:50 |
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Design of multimeric protein by ldlamini » Mon, 2021-01-11 07:23 |
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567 |
by ldlamini Mon, 2021-01-11 07:23 |
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Relax in membrane pull my protein out of the membrane by Martin Floor » Wed, 2022-01-26 07:46 |
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570 |
by Martin Floor Wed, 2022-01-26 07:46 |
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zero standard deviation of I_sc in protein-protein docking by rohi » Fri, 2020-07-03 22:19 |
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572 |
by rohi Fri, 2020-07-03 22:20 |
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General question regarding ligand-docking by Alison_Yajie » Thu, 2020-05-07 09:48 |
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574 |
by Alison_Yajie Thu, 2020-05-07 09:48 |
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Modelling at defined pH - for pmutscan - pH:mode not working by cagfa1 » Tue, 2022-03-15 04:05 |
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575 |
by Rituparna_Saman... Wed, 2022-03-23 11:21 |
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Side-chain grafting at the fixed protein and position by Kazu » Wed, 2020-05-20 08:49 |
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581 |
by Kazu Wed, 2020-05-20 08:49 |
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How many iterations of remodel is enough? by daniloboskovic » Thu, 2020-07-16 08:07 |
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591 |
by daniloboskovic Thu, 2020-07-16 08:14 |
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simple_cycpep_predict - Design mode - The base name "ARG" was added more than once by almeida85 » Thu, 2022-08-04 02:57 |
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594 |
by almeida85 Thu, 2022-08-11 00:58 |
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Scoring after HBNet by HHL_SIUC » Wed, 2020-07-01 10:49 |
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600 |
by HHL_SIUC Wed, 2020-07-01 10:49 |
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Relax evaluates protein-DNA complexes? by pablogalazdavison » Thu, 2022-05-12 12:05 |
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602 |
by pablogalazdavison Fri, 2022-05-20 12:27 |
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Ligand docking with constraint by Alison_Yajie » Wed, 2020-06-24 12:34 |
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606 |
by Alison_Yajie Wed, 2020-06-24 12:34 |
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appropriate sampling for protein docking to a multi chain assembly by SWM » Fri, 2020-01-24 11:22 |
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607 |
by SWM Fri, 2020-01-24 11:22 |
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RemodelMover and Input Pose by ozyo » Tue, 2020-12-29 09:41 |
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610 |
by ozyo Tue, 2020-12-29 09:41 |
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hpatch commands and how to identify patches by Bianca Oliva » Thu, 2021-04-29 04:02 |
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611 |
by Bianca Oliva Thu, 2021-04-29 04:02 |
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Residue selector by Alison_Yajie » Wed, 2020-06-17 19:57 |
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614 |
by Alison_Yajie Thu, 2020-06-18 09:47 |
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RosettaAntibody - No matching templates for CDR1 by agctomer » Tue, 2021-01-19 22:45 |
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615 |
by agctomer Tue, 2021-01-19 22:45 |
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RosettaAntibody3 - How can I model an extended H3? by brspurri » Fri, 2020-08-28 09:11 |
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621 |
by brspurri Fri, 2020-08-28 09:11 |
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"Residue 7 was disulfide bonded but had no partner" with antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-06-04 05:53 |
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624 |
by Sunyp_IM Thu, 2020-06-04 05:54 |
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