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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
0
13,435 by admin
Fri, 2015-09-04 16:17
Normal topic prepack - residue count fails
by xfradera » Fri, 2023-01-27 06:36
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40 by xfradera
Fri, 2023-01-27 06:36
Normal topic Trehalose
by jpfuenzalidawx » Thu, 2022-09-08 00:49
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256 by jpfuenzalidawx
Thu, 2022-09-08 00:49
Normal topic Prepacking a macrocycle for docking / preserving cyclization
by almeida85 » Thu, 2022-09-08 06:54
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290 by almeida85
Thu, 2022-09-08 06:54
Normal topic Docking HeparinSulfate to proteins using GlycanDock
by GebauerJ » Tue, 2022-08-16 07:44
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297 by GebauerJ
Tue, 2022-08-16 07:44
Normal topic Include MHC alpha helices in loop modelling protocol for pMHC complex
by Roberto » Thu, 2022-08-04 07:22
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300 by Roberto
Thu, 2022-08-04 07:22
Normal topic pMHC modelling
by Roberto » Thu, 2022-08-04 07:11
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301 by Roberto
Thu, 2022-08-04 07:11
Normal topic CS-Rosetta cofactor
by martongadanecz » Wed, 2022-08-03 01:05
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313 by martongadanecz
Wed, 2022-08-03 01:05
Normal topic Per residue total score
by johnnytam100 » Wed, 2022-07-13 21:57
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313 by johnnytam100
Wed, 2022-07-13 21:57
Normal topic Benchmarking Rosetta DDG Methods
by sareeves96 » Fri, 2022-07-29 09:55
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318 by sareeves96
Fri, 2022-07-29 09:55
Normal topic Error with RNA_denovo
by zmfowler » Thu, 2022-07-14 05:34
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325 by zmfowler
Thu, 2022-07-14 05:34
Normal topic Error with RoseTTAFold
by sc19 » Thu, 2022-07-14 03:40
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338 by sc19
Thu, 2022-07-14 03:40
Normal topic Urgent issue: Error with submitting a new Rosetta-Vienna RNP-ddG job
by eyaaaan » Sun, 2022-08-07 22:03
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340 by eyaaaan
Tue, 2022-08-09 21:59
Normal topic Ligand Docking with ROSETTA
by sc19 » Thu, 2022-07-14 01:32
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341 by sc19
Thu, 2022-07-14 01:34
Normal topic Macrocycle from a C-terminal amidated peptide
by almeida85 » Thu, 2022-08-18 07:53
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341 by almeida85
Thu, 2022-08-18 07:53
Normal topic Pepspec - sequence sampling
by almeida85 » Thu, 2022-06-23 04:05
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344 by almeida85
Thu, 2022-06-23 05:50
Normal topic problem in using "zinc_site_redesign" tool
by Isomerase » Mon, 2022-03-28 01:19
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351 by Isomerase
Mon, 2022-03-28 01:19
Normal topic Nanobody design
by chandana » Tue, 2022-08-09 20:36
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352 by chandana
Tue, 2022-08-09 20:36
Normal topic Enzyme Design Not Editing Structure
by liuwenxi » Wed, 2022-05-18 10:12
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361 by liuwenxi
Wed, 2022-05-18 10:12
Normal topic Dimeric interface redesign
by kjs1728 » Mon, 2022-05-02 21:57
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372 by kjs1728
Mon, 2022-05-02 21:57
Normal topic Params for a stapled helix peptide
by e3lm » Thu, 2022-05-26 12:55
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374 by e3lm
Thu, 2022-05-26 12:55
Normal topic SnugDock Partners parameter
by tyang39 » Fri, 2022-07-08 10:02
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377 by rmoretti
Fri, 2022-07-08 10:27
Normal topic about “protein mimic designer”
by sia » Wed, 2022-04-27 19:59
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378 by sia
Wed, 2022-04-27 19:59
Normal topic shape complementarity
by holdenj » Fri, 2022-07-15 13:24
1
379 by rmoretti
Fri, 2022-07-15 13:50
Normal topic minimize_ppi.mpi.linuxgccrelease doesn't use jd2?
by e3lm » Tue, 2022-05-17 11:58
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390 by e3lm
Tue, 2022-05-17 11:58
Normal topic IL-2 gets better binding with beta / gamma
by tonycheng1688 » Wed, 2022-05-25 10:23
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394 by tonycheng1688
Wed, 2022-05-25 10:23
Normal topic Local docking- should I use KIC?
by seayoung lee » Fri, 2022-05-27 02:45
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396 by seayoung lee
Fri, 2022-05-27 02:45
Normal topic simple_cycpep_predict thioether_lariat option
by Ken » Mon, 2022-03-14 15:14
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406 by Ken
Mon, 2022-03-14 15:14
Normal topic Repacker vs minimization
by Elijah_Hix » Fri, 2021-07-02 07:25
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410 by Elijah_Hix
Fri, 2021-07-02 07:25
Normal topic snugdock run error: Sequence for partner1 does not match first member of ensemble1
by pagumaaaaa » Fri, 2022-03-25 01:21
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412 by pagumaaaaa
Fri, 2022-03-25 01:21
Normal topic Grafting using antibody.mpi.linuxgccrelease and specifying custom template which doesnt have pdb id.
by SubhaK » Wed, 2023-01-18 23:33
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422 by SubhaK
Wed, 2023-01-18 23:33
Normal topic FlexPepDock ab initio: behavior without fragment files
by nrollins » Mon, 2021-07-26 14:16
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424 by nrollins
Mon, 2021-07-26 14:16
Normal topic Expected density
by GabrielDucrocq » Thu, 2022-07-14 06:38
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426 by matteoferla
Wed, 2022-07-20 10:50
Normal topic Flex_ddG突变设计
by wangtao » Thu, 2022-05-05 02:46
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435 by wangtao
Thu, 2022-05-05 02:46
Normal topic Pepspec error
by almeida85 » Mon, 2022-05-02 04:07
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457 by almeida85
Mon, 2022-05-02 05:05
Normal topic Rosetta DARc suboptimal dockings
by ddhoyo » Mon, 2021-10-11 06:18
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461 by ddhoyo
Mon, 2021-10-11 06:18
Normal topic Old Knotfind algorithm
by Martin Floor » Thu, 2022-09-22 07:28
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462 by rmoretti
Fri, 2022-09-23 09:38
Normal topic Segfault with Pepspec
by almeida85 » Thu, 2021-02-11 02:56
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462 by almeida85
Thu, 2021-02-11 02:56
Normal topic Unknown Element "SE" when generating NCAA params file containing selenium
by liuwenxi » Thu, 2022-08-04 16:24
2
471 by liuwenxi
Fri, 2022-08-05 09:50
Normal topic FlexPepDock bug? Constraints do not appear in total_score?
by nrollins » Mon, 2021-07-26 14:29
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471 by nrollins
Mon, 2021-07-26 14:29
Normal topic ERROR: Assertion `static_cast< size_type >( i - l_ ) < super::size()` failed. ERROR:: Exit from: src/utility/vectorL.hh line: 42
by yliang20 » Wed, 2022-06-15 22:22
1
472 by adriancmf25
Thu, 2022-07-28 02:09
Normal topic Rosetta Matcher not recognizing protonation forms of CST files like CYZ, HIS_D, etc
by Hirbond » Tue, 2022-03-01 13:16
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477 by Hirbond
Tue, 2022-03-01 13:16
Normal topic What is an SS0 predictor?
by ojmel » Fri, 2021-04-02 14:25
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481 by ojmel
Mon, 2021-04-12 07:50
Normal topic Protein design: Ligand binding between two units of a homodimer
by chemotaxis_123 » Sun, 2022-01-02 16:01
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483 by chemotaxis_123
Sun, 2022-01-02 16:01
Normal topic How to apply cartesian_ddg to multi-metric enzyme?
by Wang Zhe » Wed, 2021-12-08 10:07
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486 by Wang Zhe
Wed, 2021-12-08 10:07
Normal topic Writing down properties for new atom types
by Corvin » Tue, 2021-01-12 04:30
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487 by Corvin
Wed, 2021-01-13 04:00
Normal topic Remodel's problem in treatment with non-protein residues
by Corvin » Mon, 2021-12-13 09:07
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490 by Corvin
Mon, 2021-12-13 09:07
Normal topic simple_cycpep_predict with N-term acetylation
by Ken » Fri, 2021-12-17 09:49
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494 by Ken
Fri, 2021-12-17 09:49
Normal topic Disulfidize- "Extra content at the end of the document"
by ldlamini » Tue, 2022-05-17 02:37
1
498 by rmoretti
Tue, 2022-05-17 07:29
Normal topic RIFdocking:Unable to locate database file chemical/residue_type_sets/fa_standard/residue_types/
by sia » Tue, 2022-08-02 20:06
2
501 by SeongRyeong Go
Mon, 2022-08-15 18:31
Normal topic Using GlycanDock and the Antibody Affinity Maturation protocol.
by tbelec » Mon, 2022-02-28 12:37
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503 by tbelec
Mon, 2022-02-28 12:37
Normal topic metalloprotein ab initio with glutamic acid
by inorgchem » Tue, 2020-06-16 20:45
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505 by inorgchem
Tue, 2020-06-16 20:45
Normal topic Patch to impose tetrahedral geometry on backbone O atom
by georg » Thu, 2021-04-08 09:30
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506 by georg
Thu, 2021-04-08 09:31
Normal topic Issues with modifying dock.xml for multiple ligand docking
by DGR95 » Fri, 2021-05-14 12:51
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509 by DGR95
Fri, 2021-05-14 12:51
Normal topic flexpepdcok of lipid conjugated peptide with glyco protein.
by ravi.thakkkar369 » Fri, 2020-12-18 13:00
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512 by ravi.thakkkar369
Fri, 2020-12-18 13:00
Normal topic FastRelax Refinement severe clashes
by Victor Tobiasson » Thu, 2021-05-20 06:55
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512 by Victor Tobiasson
Thu, 2021-05-20 06:55
Normal topic clashes created with enzdes
by listofdina » Mon, 2021-08-02 06:51
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515 by listofdina
Mon, 2021-08-02 06:51
Normal topic Symmetry definition file versions
by Jeff Qu » Tue, 2021-09-28 09:53
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517 by Jeff Qu
Tue, 2021-09-28 09:53
Normal topic PDB Clustering
by code_Monkey » Mon, 2021-04-05 10:40
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519 by code_Monkey
Mon, 2021-04-05 10:40
Normal topic Linker Building in scFv
by sam_dc » Sat, 2021-10-09 05:38
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520 by sam_dc
Sat, 2021-10-09 05:38
Normal topic Bug Report - Encoding issue
by daniloboskovic » Tue, 2020-08-04 07:02
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520 by daniloboskovic
Tue, 2020-08-04 07:02
Normal topic charge grid in rosetta ligand docking using rosetta script
by syntekabio2019 » Mon, 2022-01-17 23:53
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522 by syntekabio2019
Mon, 2022-01-17 23:53
Normal topic I need help with cst file the paper: De Novo Computational Design of Retro-Aldol Enzymes
by Wenithor » Thu, 2022-01-06 12:20
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524 by Wenithor
Thu, 2022-01-06 12:20
Normal topic Ab Initio folding with HEM ligand molecule
by jseco » Fri, 2021-03-05 06:49
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527 by jseco
Mon, 2021-03-08 03:40
Normal topic Could not open file /Rosetta/rosetta_bin_linux_2020.08.61146_bundle/main/database/citations/rosetta_citations
by yliang20 » Wed, 2022-06-15 11:26
2
529 by yliang20
Wed, 2022-06-15 13:46
Normal topic SecundaryStructure Filter
by Soler » Sun, 2021-11-21 22:20
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530 by Soler
Sun, 2021-11-21 22:20
Normal topic Snugdock Error: The sequence position requested was greater than the number of residues
by stannowitz » Tue, 2023-01-17 07:37
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533 by stannowitz
Tue, 2023-01-17 23:48
Normal topic multi ligand docking using rosetta script
by syntekabio2019 » Tue, 2021-04-13 19:31
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536 by syntekabio2019
Tue, 2021-04-13 19:31
Normal topic constraining different chains together in rosetta_cm
by y_atsmonraz » Thu, 2021-11-18 02:59
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542 by y_atsmonraz
Thu, 2021-11-18 03:01
Normal topic Question with rosetta AbPredict tutorial
by terabithia2011 » Mon, 2021-01-25 09:24
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543 by terabithia2011
Mon, 2021-01-25 09:24
Normal topic FastRelaxMover parameters for antibody-antigen interaction analysis
by samuel_k » Thu, 2022-01-27 01:08
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546 by samuel_k
Thu, 2022-01-27 01:08
Normal topic clustering output file has few structures
by fabiotrovato » Mon, 2020-08-17 11:37
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549 by fabiotrovato
Mon, 2020-08-17 11:37
Normal topic Pepspec Anchor Dock
by Soler » Wed, 2020-09-16 19:08
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553 by Soler
Wed, 2020-09-16 19:08
Normal topic Fewer than expected structures in clustering output
by fabiotrovato » Thu, 2020-08-20 00:59
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554 by fabiotrovato
Thu, 2020-08-20 00:59
Normal topic Segfault error while running MR Rosetta in Phenix
by memilton » Thu, 2021-12-16 09:09
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555 by memilton
Thu, 2021-12-16 09:09
Normal topic ligand dock into HEM containg pdb
by syntekabio2019 » Thu, 2022-01-20 03:05
0
555 by syntekabio2019
Thu, 2022-01-20 03:05
Normal topic Segmentation Fault in Rosetta CM Hybridize
by yliang20 » Mon, 2022-06-06 17:25
2
555 by yliang20
Tue, 2022-06-07 08:36
Normal topic Generating the 3-mer and 9-mer fragments
by Prasoon » Wed, 2022-02-09 09:04
0
557 by Prasoon
Wed, 2022-02-09 09:04
Normal topic Problems with waters in CoupledMoves application
by Corvin » Tue, 2021-11-16 07:16
0
559 by Corvin
Tue, 2021-11-16 07:22
Normal topic Modelling humanized camelid like antibody
by terabithia2011 » Tue, 2021-01-26 10:12
0
560 by terabithia2011
Tue, 2021-01-26 10:12
Normal topic Error reading in/out glycosylated silent file - "Can't create a polymer bond after residue due to incompatible type"
by amorin » Mon, 2021-09-27 12:16
0
560 by amorin
Mon, 2021-09-27 12:16
Normal topic Creating fragment files for proteins less than 27 aa in length
by Poladu » Tue, 2021-01-26 07:50
0
563 by Poladu
Tue, 2021-01-26 07:50
Normal topic Design of multimeric protein
by ldlamini » Mon, 2021-01-11 07:23
0
567 by ldlamini
Mon, 2021-01-11 07:23
Normal topic Relax in membrane pull my protein out of the membrane
by Martin Floor » Wed, 2022-01-26 07:46
0
570 by Martin Floor
Wed, 2022-01-26 07:46
Normal topic zero standard deviation of I_sc in protein-protein docking
by rohi » Fri, 2020-07-03 22:19
0
572 by rohi
Fri, 2020-07-03 22:20
Normal topic General question regarding ligand-docking
by Alison_Yajie » Thu, 2020-05-07 09:48
0
574 by Alison_Yajie
Thu, 2020-05-07 09:48
Normal topic Modelling at defined pH - for pmutscan - pH:mode not working
by cagfa1 » Tue, 2022-03-15 04:05
1
575 by Rituparna_Saman...
Wed, 2022-03-23 11:21
Normal topic Side-chain grafting at the fixed protein and position
by Kazu » Wed, 2020-05-20 08:49
0
581 by Kazu
Wed, 2020-05-20 08:49
Normal topic How many iterations of remodel is enough?
by daniloboskovic » Thu, 2020-07-16 08:07
0
591 by daniloboskovic
Thu, 2020-07-16 08:14
Normal topic simple_cycpep_predict - Design mode - The base name "ARG" was added more than once
by almeida85 » Thu, 2022-08-04 02:57
4
594 by almeida85
Thu, 2022-08-11 00:58
Normal topic Scoring after HBNet
by HHL_SIUC » Wed, 2020-07-01 10:49
0
600 by HHL_SIUC
Wed, 2020-07-01 10:49
Normal topic Relax evaluates protein-DNA complexes?
by pablogalazdavison » Thu, 2022-05-12 12:05
2
602 by pablogalazdavison
Fri, 2022-05-20 12:27
Normal topic Ligand docking with constraint
by Alison_Yajie » Wed, 2020-06-24 12:34
0
606 by Alison_Yajie
Wed, 2020-06-24 12:34
Normal topic appropriate sampling for protein docking to a multi chain assembly
by SWM » Fri, 2020-01-24 11:22
0
607 by SWM
Fri, 2020-01-24 11:22
Normal topic RemodelMover and Input Pose
by ozyo » Tue, 2020-12-29 09:41
0
610 by ozyo
Tue, 2020-12-29 09:41
Normal topic hpatch commands and how to identify patches
by Bianca Oliva » Thu, 2021-04-29 04:02
0
611 by Bianca Oliva
Thu, 2021-04-29 04:02
Normal topic Residue selector
by Alison_Yajie » Wed, 2020-06-17 19:57
0
614 by Alison_Yajie
Thu, 2020-06-18 09:47
Normal topic RosettaAntibody - No matching templates for CDR1
by agctomer » Tue, 2021-01-19 22:45
0
615 by agctomer
Tue, 2021-01-19 22:45
Normal topic RosettaAntibody3 - How can I model an extended H3?
by brspurri » Fri, 2020-08-28 09:11
0
621 by brspurri
Fri, 2020-08-28 09:11
Normal topic "Residue 7 was disulfide bonded but had no partner" with antibody.linuxgccrelease
by Sunyp_IM » Thu, 2020-06-04 05:53
0
624 by Sunyp_IM
Thu, 2020-06-04 05:54

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