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Rosetta 3 - Applications
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FAQ by admin » Mon, 2010-08-30 04:18 |
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by admin Fri, 2015-09-04 16:17 |
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charge grid in rosetta ligand docking using rosetta script by syntekabio2019 » Mon, 2022-01-17 23:53 |
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by syntekabio2019 Mon, 2022-01-17 23:53 |
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Protein design: Ligand binding between two units of a homodimer by chemotaxis_123 » Sun, 2022-01-02 16:01 |
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by chemotaxis_123 Sun, 2022-01-02 16:01 |
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I need help with cst file the paper: De Novo Computational Design of Retro-Aldol Enzymes by Wenithor » Thu, 2022-01-06 12:20 |
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by Wenithor Thu, 2022-01-06 12:20 |
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simple_cycpep_predict with N-term acetylation by Ken » Fri, 2021-12-17 09:49 |
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by Ken Fri, 2021-12-17 09:49 |
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Remodel's problem in treatment with non-protein residues by Corvin » Mon, 2021-12-13 09:07 |
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by Corvin Mon, 2021-12-13 09:07 |
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ERROR: APBS failed to generate the result file. by bhavranek » Sat, 2021-12-18 11:01 |
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by bhavranek Sun, 2021-12-26 21:05 |
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Segfault error while running MR Rosetta in Phenix by memilton » Thu, 2021-12-16 09:09 |
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by memilton Thu, 2021-12-16 09:09 |
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[LoopModelerMover] ERROR: Can't build a fold tree from a loop with an unspecified cut point. by dgm3 » Sun, 2021-12-26 18:32 |
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by dgm3 Fri, 2021-12-31 17:42 |
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How to apply cartesian_ddg to multi-metric enzyme? by Wang Zhe » Wed, 2021-12-08 10:07 |
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by Wang Zhe Wed, 2021-12-08 10:07 |
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trRosetta - Nan occuring in Hbond calculation by y_atsmonraz » Mon, 2021-10-04 09:16 |
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by y_atsmonraz Mon, 2021-10-04 09:16 |
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getting a3m files by alonwenger » Wed, 2021-12-15 02:38 |
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by alonwenger Sat, 2021-12-18 12:32 |
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connecting rna strands together by y_atsmonraz » Tue, 2021-11-09 05:42 |
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by y_atsmonraz Thu, 2021-11-11 04:51 |
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Rosetta DARc suboptimal dockings by ddhoyo » Mon, 2021-10-11 06:18 |
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by ddhoyo Mon, 2021-10-11 06:18 |
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Linker Building in scFv by sam_dc » Sat, 2021-10-09 05:38 |
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by sam_dc Sat, 2021-10-09 05:38 |
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Symmetry definition file versions by Jeff Qu » Tue, 2021-09-28 09:53 |
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by Jeff Qu Tue, 2021-09-28 09:53 |
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SecundaryStructure Filter by Soler » Sun, 2021-11-21 22:20 |
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by Soler Sun, 2021-11-21 22:20 |
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constraining different chains together in rosetta_cm by y_atsmonraz » Thu, 2021-11-18 02:59 |
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by y_atsmonraz Thu, 2021-11-18 03:01 |
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Problems with waters in CoupledMoves application by Corvin » Tue, 2021-11-16 07:16 |
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by Corvin Tue, 2021-11-16 07:22 |
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Repacker vs minimization by Elijah_Hix » Fri, 2021-07-02 07:25 |
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by Elijah_Hix Fri, 2021-07-02 07:25 |
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Error reading in/out glycosylated silent file - "Can't create a polymer bond after residue due to incompatible type" by amorin » Mon, 2021-09-27 12:16 |
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by amorin Mon, 2021-09-27 12:16 |
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FlexPepDock ab initio: behavior without fragment files by nrollins » Mon, 2021-07-26 14:16 |
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by nrollins Mon, 2021-07-26 14:16 |
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The energy terms in InterfaceAnalyzer by Sunyp_IM » Tue, 2021-11-02 18:43 |
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by zivben Sat, 2021-11-13 04:49 |
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C-termini remodelling of dimeric structure removes second chain by LeonhardJS » Wed, 2021-10-13 06:23 |
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by LeonhardJS Fri, 2021-11-12 01:20 |
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antibody - sequence position requested was 0 by jremmel » Mon, 2021-09-27 12:26 |
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by nannemdp Mon, 2021-09-27 14:22 |
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FlexPepDock bug? Constraints do not appear in total_score? by nrollins » Mon, 2021-07-26 14:29 |
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by nrollins Mon, 2021-07-26 14:29 |
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clashes created with enzdes by listofdina » Mon, 2021-08-02 06:51 |
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by listofdina Mon, 2021-08-02 06:51 |
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Relaxed proteins show higher clash score in molprobity results. by Wang Zhe » Fri, 2021-12-03 04:32 |
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by smlewis Wed, 2021-12-08 13:02 |
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Issues with modifying dock.xml for multiple ligand docking by DGR95 » Fri, 2021-05-14 12:51 |
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by DGR95 Fri, 2021-05-14 12:51 |
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FastRelax Refinement severe clashes by Victor Tobiasson » Thu, 2021-05-20 06:55 |
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by Victor Tobiasson Thu, 2021-05-20 06:55 |
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What is an SS0 predictor? by ojmel » Fri, 2021-04-02 14:25 |
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by ojmel Mon, 2021-04-12 07:50 |
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building a protein-dna homology model via cm_rosetta by y_atsmonraz » Wed, 2021-10-20 23:11 |
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by y_atsmonraz Tue, 2021-11-02 01:47 |
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Patch to impose tetrahedral geometry on backbone O atom by georg » Thu, 2021-04-08 09:30 |
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by georg Thu, 2021-04-08 09:31 |
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How to Perform point mutations with NCAA by Subhrodeep Saha » Tue, 2021-06-22 02:05 |
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by vmulligan Thu, 2021-06-24 13:23 |
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Writing down properties for new atom types by Corvin » Tue, 2021-01-12 04:30 |
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by Corvin Wed, 2021-01-13 04:00 |
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Segfault with Pepspec by almeida85 » Thu, 2021-02-11 02:56 |
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by almeida85 Thu, 2021-02-11 02:56 |
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Python2 script in Rosetta3.13 by ddhoyo » Wed, 2021-09-15 04:05 |
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by matteoferla Wed, 2021-09-15 06:04 |
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multi ligand docking using rosetta script by syntekabio2019 » Tue, 2021-04-13 19:31 |
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by syntekabio2019 Tue, 2021-04-13 19:31 |
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Stepwise Monte Carlo - errors with ResidueTypeSet and Disulfides by user42 » Wed, 2021-07-21 20:34 |
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by everyday847 Fri, 2021-07-30 13:26 |
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Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:30 |
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by taylorjones Wed, 2021-06-09 16:38 |
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hpatch commands and how to identify patches by Bianca Oliva » Thu, 2021-04-29 04:02 |
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by Bianca Oliva Thu, 2021-04-29 04:02 |
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duplex RNA by amir_tagh » Thu, 2021-08-05 06:34 |
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by everyday847 Mon, 2021-08-16 10:43 |
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PDB Clustering by code_Monkey » Mon, 2021-04-05 10:40 |
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by code_Monkey Mon, 2021-04-05 10:40 |
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Ab Initio folding with HEM ligand molecule by jseco » Fri, 2021-03-05 06:49 |
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by jseco Mon, 2021-03-08 03:40 |
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Question with rosetta AbPredict tutorial by terabithia2011 » Mon, 2021-01-25 09:24 |
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by terabithia2011 Mon, 2021-01-25 09:24 |
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Topobuilder segmentation fault by tatsiana.bylund » Mon, 2021-08-09 07:10 |
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by tatsiana.bylund Mon, 2021-08-09 07:10 |
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flexpepdcok of lipid conjugated peptide with glyco protein. by ravi.thakkkar369 » Fri, 2020-12-18 13:00 |
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by ravi.thakkkar369 Fri, 2020-12-18 13:00 |
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setup_RosettaCM.py by browns02 » Mon, 2021-06-28 07:13 |
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by browns02 Tue, 2021-06-29 11:41 |
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Design of multimeric protein by ldlamini » Mon, 2021-01-11 07:23 |
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by ldlamini Mon, 2021-01-11 07:23 |
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Question about running scallo by danbo » Mon, 2021-11-29 23:25 |
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by danbo Wed, 2021-12-22 23:51 |
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Creating fragment files for proteins less than 27 aa in length by Poladu » Tue, 2021-01-26 07:50 |
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by Poladu Tue, 2021-01-26 07:50 |
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Modelling humanized camelid like antibody by terabithia2011 » Tue, 2021-01-26 10:12 |
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by terabithia2011 Tue, 2021-01-26 10:12 |
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Bug Report - Encoding issue by daniloboskovic » Tue, 2020-08-04 07:02 |
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by daniloboskovic Tue, 2020-08-04 07:02 |
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RosettaCM/hybridize by kywei » Wed, 2021-04-28 09:56 |
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by vmulligan Wed, 2021-04-28 12:59 |
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Help with enzyme design files by Wenithor » Thu, 2021-04-29 10:33 |
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by rmoretti Thu, 2021-04-29 10:44 |
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metalloprotein ab initio with glutamic acid by inorgchem » Tue, 2020-06-16 20:45 |
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by inorgchem Tue, 2020-06-16 20:45 |
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Pepspec Anchor Dock by Soler » Wed, 2020-09-16 19:08 |
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by Soler Wed, 2020-09-16 19:08 |
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rosetta_cm segfault by browns02 » Fri, 2021-07-09 13:35 |
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by rmoretti Fri, 2021-07-09 15:05 |
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RosettaAntibody - No matching templates for CDR1 by agctomer » Tue, 2021-01-19 22:45 |
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by agctomer Tue, 2021-01-19 22:45 |
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residue_energy_breakdown of a protein-ligand complex. by sam_dc » Tue, 2021-05-18 04:45 |
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by rmoretti Tue, 2021-05-18 07:21 |
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RemodelMover and Input Pose by ozyo » Tue, 2020-12-29 09:41 |
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by ozyo Tue, 2020-12-29 09:41 |
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different value of score from rna_denovo and rna_score? by yikanzhang » Wed, 2021-02-03 07:17 |
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by CameronJA Tue, 2021-06-15 20:02 |
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clustering output file has few structures by fabiotrovato » Mon, 2020-08-17 11:37 |
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by fabiotrovato Mon, 2020-08-17 11:37 |
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Side-chain grafting at the fixed protein and position by Kazu » Wed, 2020-05-20 08:49 |
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by Kazu Wed, 2020-05-20 08:49 |
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core.optimization.LineMinimizer: [ ERROR ] Inaccurate G! by aralz » Thu, 2021-02-11 00:46 |
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by aralz Thu, 2021-02-11 00:46 |
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D-amino acids tripeptide docking. by sam_dc » Sat, 2021-07-03 08:48 |
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by vmulligan Tue, 2021-07-06 08:27 |
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RoseTTaFold by ozsolomon » Thu, 2021-10-07 05:27 |
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by ozsolomon Thu, 2021-10-07 14:25 |
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Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)? by Corvin » Wed, 2020-12-16 04:58 |
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by Corvin Wed, 2020-12-30 09:21 |
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Fewer than expected structures in clustering output by fabiotrovato » Thu, 2020-08-20 00:59 |
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by fabiotrovato Thu, 2020-08-20 00:59 |
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How to use base_pair_constraint for RNA as a constraint term？ by yels » Sat, 2021-04-03 01:19 |
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by everyday847 Sun, 2021-04-04 12:48 |
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How many iterations of remodel is enough? by daniloboskovic » Thu, 2020-07-16 08:07 |
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by daniloboskovic Thu, 2020-07-16 08:14 |
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zero standard deviation of I_sc in protein-protein docking by rohi » Fri, 2020-07-03 22:19 |
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by rohi Fri, 2020-07-03 22:20 |
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Global Docking with carbohydrates by ChiauShu » Sat, 2020-08-22 20:16 |
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by ChiauShu Sat, 2020-08-22 20:16 |
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Should I be stripping water molecules from my input structure for Rosetta Design? by chrisHKL » Wed, 2021-03-24 14:22 |
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by smlewis Wed, 2021-03-24 14:59 |
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Scoring after HBNet by HHL_SIUC » Wed, 2020-07-01 10:49 |
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by HHL_SIUC Wed, 2020-07-01 10:49 |
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General question regarding ligand-docking by Alison_Yajie » Thu, 2020-05-07 09:48 |
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by Alison_Yajie Thu, 2020-05-07 09:48 |
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Filling the missing loops by code_Monkey » Tue, 2021-04-27 07:44 |
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by code_Monkey Tue, 2021-04-27 12:11 |
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"Residue 7 was disulfide bonded but had no partner" with antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-06-04 05:53 |
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by Sunyp_IM Thu, 2020-06-04 05:54 |
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Comparative Modeling Tutorial by code_Monkey » Thu, 2021-03-04 12:35 |
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by rmoretti Fri, 2021-03-05 09:35 |
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Ligand docking with constraint by Alison_Yajie » Wed, 2020-06-24 12:34 |
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by Alison_Yajie Wed, 2020-06-24 12:34 |
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Residue selector by Alison_Yajie » Wed, 2020-06-17 19:57 |
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by Alison_Yajie Thu, 2020-06-18 09:47 |
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Error when using Remodel on a protein with a chemically bound ligand by Pappmaschee » Wed, 2020-12-16 09:23 |
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by Pappmaschee Wed, 2020-12-16 09:23 |
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Does antibody_numbering_converter support camelid antibody? by mxp » Tue, 2020-07-07 01:21 |
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by mxp Tue, 2020-07-07 01:21 |
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Metal Ion in symmetric design by tschiex » Wed, 2020-07-08 05:28 |
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by tschiex Wed, 2020-07-08 05:28 |
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appropriate sampling for protein docking to a multi chain assembly by SWM » Fri, 2020-01-24 11:22 |
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by SWM Fri, 2020-01-24 11:22 |
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FlexPepDocking by jlawrie » Tue, 2020-09-15 12:52 |
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by jlawrie Tue, 2020-09-15 12:52 |
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RosettaAntibody3 - How can I model an extended H3? by brspurri » Fri, 2020-08-28 09:11 |
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by brspurri Fri, 2020-08-28 09:11 |
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ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-07-02 07:05 |
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by Alison_Yajie Thu, 2020-07-02 07:10 |
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constraints in Rosetta ligand docking (AddorRemoveMatchCsts, Addconstraints Mover, and ConstraintSetMover) by rohi » Mon, 2021-01-11 13:32 |
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by rohi Mon, 2021-01-11 13:58 |
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Generalized KIC loop closure affects downstream residues without perturbations by chenna » Mon, 2021-04-26 02:16 |
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by chenna Wed, 2021-04-28 07:18 |
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r_frag_quality by ii_cnr » Mon, 2021-04-12 03:06 |
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by ii_cnr Mon, 2021-04-12 23:44 |
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ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-05-21 09:42 |
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by Alison_Yajie Thu, 2020-05-21 09:42 |
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protein relax by Alison_Yajie » Tue, 2020-05-19 08:29 |
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by Alison_Yajie Tue, 2020-05-19 08:29 |
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Zero residues error in docking by cjy318 » Tue, 2020-07-28 19:47 |
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438 |
by cjy318 Tue, 2020-07-28 19:47 |
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NCAA attached at two points by tsztain » Wed, 2021-06-16 15:20 |
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by matteoferla Sat, 2021-06-19 03:07 |
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Docking Analysis and Metrics in RosettaLigand. by sam_dc » Tue, 2021-04-20 03:54 |
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by rmoretti Tue, 2021-04-20 13:27 |
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[Solved] Resetting a pose with RigidBodyTransMover by bjharris » Wed, 2021-01-13 14:01 |
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442 |
by bjharris Fri, 2021-01-22 17:34 |
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Modelling of multi-component symmetrical structures by LanMei » Wed, 2020-10-07 09:58 |
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445 |
by LanMei Wed, 2020-10-07 09:58 |
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Disulfide Bonds in Loop Modeling by code_Monkey » Mon, 2021-05-03 08:27 |
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by code_Monkey Thu, 2021-05-06 07:14 |
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Element 'trRosettaProtocol': This element is not expected. by csaylan » Tue, 2021-04-20 14:21 |
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449 |
by csaylan Tue, 2021-04-20 16:13 |
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