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Rosetta 3 - Applications
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FAQ by admin » Mon, 2010-08-30 04:18 |
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by admin Fri, 2015-09-04 16:17 |
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Pepspec - sequence sampling by almeida85 » Thu, 2022-06-23 04:05 |
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by almeida85 Thu, 2022-06-23 05:50 |
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ERROR: Assertion `static_cast< size_type >( i - l_ ) < super::size()` failed. ERROR:: Exit from: src/utility/vectorL.hh line: 42 by yliang20 » Wed, 2022-06-15 22:22 |
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by yliang20 Wed, 2022-06-15 22:22 |
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Could not open file /Rosetta/rosetta_bin_linux_2020.08.61146_bundle/main/database/citations/rosetta_citations by yliang20 » Wed, 2022-06-15 11:26 |
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by yliang20 Wed, 2022-06-15 13:46 |
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Enzyme Design Not Editing Structure by liuwenxi » Wed, 2022-05-18 10:12 |
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by liuwenxi Wed, 2022-05-18 10:12 |
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minimize_ppi.mpi.linuxgccrelease doesn't use jd2? by e3lm » Tue, 2022-05-17 11:58 |
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by e3lm Tue, 2022-05-17 11:58 |
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Disulfidize- "Extra content at the end of the document" by ldlamini » Tue, 2022-05-17 02:37 |
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by rmoretti Tue, 2022-05-17 07:29 |
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Dimeric interface redesign by kjs1728 » Mon, 2022-05-02 21:57 |
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by kjs1728 Mon, 2022-05-02 21:57 |
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IL-2 gets better binding with beta / gamma by tonycheng1688 » Wed, 2022-05-25 10:23 |
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by tonycheng1688 Wed, 2022-05-25 10:23 |
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Local docking- should I use KIC? by seayoung lee » Fri, 2022-05-27 02:45 |
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by seayoung lee Fri, 2022-05-27 02:45 |
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Params for a stapled helix peptide by e3lm » Thu, 2022-05-26 12:55 |
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by e3lm Thu, 2022-05-26 12:55 |
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about “protein mimic designer” by sia » Wed, 2022-04-27 19:59 |
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by sia Wed, 2022-04-27 19:59 |
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Pepspec error by almeida85 » Mon, 2022-05-02 04:07 |
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by almeida85 Mon, 2022-05-02 05:05 |
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problem in using "zinc_site_redesign" tool by Isomerase » Mon, 2022-03-28 01:19 |
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by Isomerase Mon, 2022-03-28 01:19 |
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Segmentation Fault in Rosetta CM Hybridize by yliang20 » Mon, 2022-06-06 17:25 |
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by yliang20 Tue, 2022-06-07 08:36 |
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Flex_ddG突变设计 by wangtao » Thu, 2022-05-05 02:46 |
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by wangtao Thu, 2022-05-05 02:46 |
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snugdock run error: Sequence for partner1 does not match first member of ensemble1 by pagumaaaaa » Fri, 2022-03-25 01:21 |
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by pagumaaaaa Fri, 2022-03-25 01:21 |
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Relax evaluates protein-DNA complexes? by pablogalazdavison » Thu, 2022-05-12 12:05 |
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by pablogalazdavison Fri, 2022-05-20 12:27 |
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simple_cycpep_predict thioether_lariat option by Ken » Mon, 2022-03-14 15:14 |
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by Ken Mon, 2022-03-14 15:14 |
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Rosetta Matcher not recognizing protonation forms of CST files like CYZ, HIS_D, etc by Hirbond » Tue, 2022-03-01 13:16 |
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by Hirbond Tue, 2022-03-01 13:16 |
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Ways to improve AbRelax performance? by Corvin » Tue, 2022-04-19 06:10 |
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by Corvin Thu, 2022-04-21 00:50 |
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Modelling at defined pH - for pmutscan - pH:mode not working by cagfa1 » Tue, 2022-03-15 04:05 |
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by Rituparna_Saman... Wed, 2022-03-23 11:21 |
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simple_cycpep_predict with N-term acetylation by Ken » Fri, 2021-12-17 09:49 |
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by Ken Fri, 2021-12-17 09:49 |
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Protein design: Ligand binding between two units of a homodimer by chemotaxis_123 » Sun, 2022-01-02 16:01 |
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by chemotaxis_123 Sun, 2022-01-02 16:01 |
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How to apply cartesian_ddg to multi-metric enzyme? by Wang Zhe » Wed, 2021-12-08 10:07 |
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by Wang Zhe Wed, 2021-12-08 10:07 |
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Using GlycanDock and the Antibody Affinity Maturation protocol. by tbelec » Mon, 2022-02-28 12:37 |
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by tbelec Mon, 2022-02-28 12:37 |
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Remodel's problem in treatment with non-protein residues by Corvin » Mon, 2021-12-13 09:07 |
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by Corvin Mon, 2021-12-13 09:07 |
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Rosetta DARc suboptimal dockings by ddhoyo » Mon, 2021-10-11 06:18 |
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by ddhoyo Mon, 2021-10-11 06:18 |
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charge grid in rosetta ligand docking using rosetta script by syntekabio2019 » Mon, 2022-01-17 23:53 |
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by syntekabio2019 Mon, 2022-01-17 23:53 |
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I need help with cst file the paper: De Novo Computational Design of Retro-Aldol Enzymes by Wenithor » Thu, 2022-01-06 12:20 |
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by Wenithor Thu, 2022-01-06 12:20 |
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Segfault error while running MR Rosetta in Phenix by memilton » Thu, 2021-12-16 09:09 |
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by memilton Thu, 2021-12-16 09:09 |
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Symmetry definition file versions by Jeff Qu » Tue, 2021-09-28 09:53 |
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by Jeff Qu Tue, 2021-09-28 09:53 |
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ligand dock into HEM containg pdb by syntekabio2019 » Thu, 2022-01-20 03:05 |
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by syntekabio2019 Thu, 2022-01-20 03:05 |
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How do I change the default Compiler for Rosetta？ by pagumaaaaa » Wed, 2022-03-16 00:23 |
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by pagumaaaaa Thu, 2022-03-24 22:40 |
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Linker Building in scFv by sam_dc » Sat, 2021-10-09 05:38 |
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by sam_dc Sat, 2021-10-09 05:38 |
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Generating the 3-mer and 9-mer fragments by Prasoon » Wed, 2022-02-09 09:04 |
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by Prasoon Wed, 2022-02-09 09:04 |
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FastRelaxMover parameters for antibody-antigen interaction analysis by samuel_k » Thu, 2022-01-27 01:08 |
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by samuel_k Thu, 2022-01-27 01:08 |
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FlexPepDock ab initio: behavior without fragment files by nrollins » Mon, 2021-07-26 14:16 |
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by nrollins Mon, 2021-07-26 14:16 |
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SecundaryStructure Filter by Soler » Sun, 2021-11-21 22:20 |
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by Soler Sun, 2021-11-21 22:20 |
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constraining different chains together in rosetta_cm by y_atsmonraz » Thu, 2021-11-18 02:59 |
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by y_atsmonraz Thu, 2021-11-18 03:01 |
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Repacker vs minimization by Elijah_Hix » Fri, 2021-07-02 07:25 |
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by Elijah_Hix Fri, 2021-07-02 07:25 |
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trRosetta - Nan occuring in Hbond calculation by y_atsmonraz » Mon, 2021-10-04 09:16 |
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by shivarawat115 Mon, 2022-04-11 16:10 |
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ERROR: APBS failed to generate the result file. by bhavranek » Sat, 2021-12-18 11:01 |
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by bhavranek Sun, 2021-12-26 21:05 |
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Relax in membrane pull my protein out of the membrane by Martin Floor » Wed, 2022-01-26 07:46 |
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by Martin Floor Wed, 2022-01-26 07:46 |
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Can anybody suggests some flags to run Rifdock? by Hyunmi Song » Sun, 2022-01-23 16:45 |
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by Hyunmi Song Sun, 2022-01-23 16:45 |
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Problems with waters in CoupledMoves application by Corvin » Tue, 2021-11-16 07:16 |
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by Corvin Tue, 2021-11-16 07:22 |
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[LoopModelerMover] ERROR: Can't build a fold tree from a loop with an unspecified cut point. by dgm3 » Sun, 2021-12-26 18:32 |
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by dgm3 Fri, 2021-12-31 17:42 |
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connecting rna strands together by y_atsmonraz » Tue, 2021-11-09 05:42 |
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by y_atsmonraz Thu, 2021-11-11 04:51 |
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RosettaDock 4.0 ambiguous ERROR by sam_dc » Fri, 2022-03-18 09:36 |
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by rmoretti Tue, 2022-03-22 09:10 |
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small ligand docking in Ubuntu 20.04, please help by guowuchen » Sun, 2022-03-06 18:12 |
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by guowuchen Mon, 2022-03-07 23:34 |
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Error reading in/out glycosylated silent file - "Can't create a polymer bond after residue due to incompatible type" by amorin » Mon, 2021-09-27 12:16 |
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by amorin Mon, 2021-09-27 12:16 |
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FlexPepDock bug? Constraints do not appear in total_score? by nrollins » Mon, 2021-07-26 14:29 |
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by nrollins Mon, 2021-07-26 14:29 |
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clashes created with enzdes by listofdina » Mon, 2021-08-02 06:51 |
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by listofdina Mon, 2021-08-02 06:51 |
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C-termini remodelling of dimeric structure removes second chain by LeonhardJS » Wed, 2021-10-13 06:23 |
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by LeonhardJS Fri, 2021-11-12 01:20 |
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What is an SS0 predictor? by ojmel » Fri, 2021-04-02 14:25 |
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by ojmel Mon, 2021-04-12 07:50 |
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Issues with modifying dock.xml for multiple ligand docking by DGR95 » Fri, 2021-05-14 12:51 |
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by DGR95 Fri, 2021-05-14 12:51 |
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Segfault with Pepspec by almeida85 » Thu, 2021-02-11 02:56 |
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by almeida85 Thu, 2021-02-11 02:56 |
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Writing down properties for new atom types by Corvin » Tue, 2021-01-12 04:30 |
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by Corvin Wed, 2021-01-13 04:00 |
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Patch to impose tetrahedral geometry on backbone O atom by georg » Thu, 2021-04-08 09:30 |
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by georg Thu, 2021-04-08 09:31 |
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FastRelax Refinement severe clashes by Victor Tobiasson » Thu, 2021-05-20 06:55 |
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by Victor Tobiasson Thu, 2021-05-20 06:55 |
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PDB Clustering by code_Monkey » Mon, 2021-04-05 10:40 |
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by code_Monkey Mon, 2021-04-05 10:40 |
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antibody - sequence position requested was 0 by jremmel » Mon, 2021-09-27 12:26 |
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by nannemdp Mon, 2021-09-27 14:22 |
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multi ligand docking using rosetta script by syntekabio2019 » Tue, 2021-04-13 19:31 |
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by syntekabio2019 Tue, 2021-04-13 19:31 |
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flexpepdcok of lipid conjugated peptide with glyco protein. by ravi.thakkkar369 » Fri, 2020-12-18 13:00 |
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by ravi.thakkkar369 Fri, 2020-12-18 13:00 |
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Question with rosetta AbPredict tutorial by terabithia2011 » Mon, 2021-01-25 09:24 |
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by terabithia2011 Mon, 2021-01-25 09:24 |
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Ab Initio folding with HEM ligand molecule by jseco » Fri, 2021-03-05 06:49 |
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by jseco Mon, 2021-03-08 03:40 |
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metalloprotein ab initio with glutamic acid by inorgchem » Tue, 2020-06-16 20:45 |
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by inorgchem Tue, 2020-06-16 20:45 |
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Design of multimeric protein by ldlamini » Mon, 2021-01-11 07:23 |
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by ldlamini Mon, 2021-01-11 07:23 |
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Bug Report - Encoding issue by daniloboskovic » Tue, 2020-08-04 07:02 |
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by daniloboskovic Tue, 2020-08-04 07:02 |
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The energy terms in InterfaceAnalyzer by Sunyp_IM » Tue, 2021-11-02 18:43 |
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by zivben Sat, 2021-11-13 04:49 |
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hpatch commands and how to identify patches by Bianca Oliva » Thu, 2021-04-29 04:02 |
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by Bianca Oliva Thu, 2021-04-29 04:02 |
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Creating fragment files for proteins less than 27 aa in length by Poladu » Tue, 2021-01-26 07:50 |
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by Poladu Tue, 2021-01-26 07:50 |
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Pepspec Anchor Dock by Soler » Wed, 2020-09-16 19:08 |
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by Soler Wed, 2020-09-16 19:08 |
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Modelling humanized camelid like antibody by terabithia2011 » Tue, 2021-01-26 10:12 |
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by terabithia2011 Tue, 2021-01-26 10:12 |
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clustering output file has few structures by fabiotrovato » Mon, 2020-08-17 11:37 |
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by fabiotrovato Mon, 2020-08-17 11:37 |
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DockingProtocol by Soler » Fri, 2022-02-11 00:12 |
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by gezmi Tue, 2022-02-15 21:47 |
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Stepwise Monte Carlo - errors with ResidueTypeSet and Disulfides by user42 » Wed, 2021-07-21 20:34 |
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by everyday847 Fri, 2021-07-30 13:26 |
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Fewer than expected structures in clustering output by fabiotrovato » Thu, 2020-08-20 00:59 |
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by fabiotrovato Thu, 2020-08-20 00:59 |
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RosettaAntibody - No matching templates for CDR1 by agctomer » Tue, 2021-01-19 22:45 |
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by agctomer Tue, 2021-01-19 22:45 |
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General question regarding ligand-docking by Alison_Yajie » Thu, 2020-05-07 09:48 |
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by Alison_Yajie Thu, 2020-05-07 09:48 |
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zero standard deviation of I_sc in protein-protein docking by rohi » Fri, 2020-07-03 22:19 |
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by rohi Fri, 2020-07-03 22:20 |
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Side-chain grafting at the fixed protein and position by Kazu » Wed, 2020-05-20 08:49 |
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by Kazu Wed, 2020-05-20 08:49 |
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duplex RNA by amir_tagh » Thu, 2021-08-05 06:34 |
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by everyday847 Mon, 2021-08-16 10:43 |
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RemodelMover and Input Pose by ozyo » Tue, 2020-12-29 09:41 |
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by ozyo Tue, 2020-12-29 09:41 |
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How many iterations of remodel is enough? by daniloboskovic » Thu, 2020-07-16 08:07 |
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by daniloboskovic Thu, 2020-07-16 08:14 |
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Python2 script in Rosetta3.13 by ddhoyo » Wed, 2021-09-15 04:05 |
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478 |
by matteoferla Wed, 2021-09-15 06:04 |
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Scoring after HBNet by HHL_SIUC » Wed, 2020-07-01 10:49 |
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by HHL_SIUC Wed, 2020-07-01 10:49 |
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Residue selector by Alison_Yajie » Wed, 2020-06-17 19:57 |
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by Alison_Yajie Thu, 2020-06-18 09:47 |
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Global Docking with carbohydrates by ChiauShu » Sat, 2020-08-22 20:16 |
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by ChiauShu Sat, 2020-08-22 20:16 |
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Help with enzyme design files by Wenithor » Thu, 2021-04-29 10:33 |
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487 |
by rmoretti Thu, 2021-04-29 10:44 |
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RosettaCM/hybridize by kywei » Wed, 2021-04-28 09:56 |
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488 |
by vmulligan Wed, 2021-04-28 12:59 |
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Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:30 |
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490 |
by taylorjones Wed, 2021-06-09 16:38 |
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Ligand docking with constraint by Alison_Yajie » Wed, 2020-06-24 12:34 |
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494 |
by Alison_Yajie Wed, 2020-06-24 12:34 |
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appropriate sampling for protein docking to a multi chain assembly by SWM » Fri, 2020-01-24 11:22 |
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by SWM Fri, 2020-01-24 11:22 |
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core.optimization.LineMinimizer: [ ERROR ] Inaccurate G! by aralz » Thu, 2021-02-11 00:46 |
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495 |
by aralz Thu, 2021-02-11 00:46 |
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Does antibody_numbering_converter support camelid antibody? by mxp » Tue, 2020-07-07 01:21 |
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by mxp Tue, 2020-07-07 01:21 |
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"Residue 7 was disulfide bonded but had no partner" with antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-06-04 05:53 |
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by Sunyp_IM Thu, 2020-06-04 05:54 |
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Metal Ion in symmetric design by tschiex » Wed, 2020-07-08 05:28 |
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by tschiex Wed, 2020-07-08 05:28 |
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RosettaAntibody3 - How can I model an extended H3? by brspurri » Fri, 2020-08-28 09:11 |
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500 |
by brspurri Fri, 2020-08-28 09:11 |
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Topobuilder segmentation fault by tatsiana.bylund » Mon, 2021-08-09 07:10 |
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505 |
by tatsiana.bylund Mon, 2021-08-09 07:10 |
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