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Rosetta 3 - Applications

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
0
7,800 by admin
Fri, 2015-09-04 16:17
Hot topic multiple template homolgy modelling (Page: 1, 2)
by pdbb » Tue, 2012-10-30 08:12
51
46,208 by rmoretti
Fri, 2018-05-18 12:40
Normal topic Fastsaxs
by Pernille » Mon, 2013-07-22 07:29
14
33,447 by rmoretti
Mon, 2021-06-14 12:56
Hot topic a trouble during floppytail modeling
by chenchaozhao » Tue, 2011-03-15 03:59
39
28,682 by smlewis
Thu, 2017-06-01 10:02
Normal topic csrosetta.org login
by jfeuva » Tue, 2014-12-09 14:49
0
23,979 by jfeuva
Tue, 2014-12-09 14:49
Hot topic Error with recognizing rotamer library atoms
by oerbilgin » Fri, 2011-11-04 15:23
19
22,888 by oerbilgin
Mon, 2014-04-21 06:47
Hot topic some application troubles when using resfile flag
by chenchaozhao » Tue, 2011-04-05 00:05
24
20,104 by smlewis
Mon, 2014-04-21 06:47
Normal topic What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"?
by lanselibai » Fri, 2014-10-17 06:06
3
20,045 by rmoretti
Fri, 2014-10-17 10:17
Normal topic "score vs RMSD plots" & "cluster models"
by lanselibai » Thu, 2014-09-25 06:51
12
18,677 by lanselibai
Wed, 2014-10-15 01:54
Hot topic Syntax for relax.linuxgccrelease
by lanselibai » Wed, 2014-09-24 04:34
18
18,452 by lanselibai
Tue, 2014-12-02 09:46
Hot topic ddG calculation
by malkeet.singh » Sun, 2017-06-25 07:53
32
16,039 by malkeet.singh
Tue, 2017-11-14 04:33
Hot topic Ab initio with multiple metal ions
by cheyuk » Sun, 2013-12-29 17:58
19
15,704 by masterofpuppets
Tue, 2015-01-27 04:26
Hot topic Rosetta Scripts: Loop Modeling w. Selective Repacking
by aroop » Mon, 2013-01-07 08:45
24
14,731 by aroop
Mon, 2014-04-21 06:47
Hot topic A problem with RosettaLigand
by Rosettasz » Fri, 2013-07-19 16:09
16
14,727 by Rosettasz
Mon, 2014-04-21 06:48
Hot topic Garbled Ligands from docking_protocol
by skovacs » Tue, 2011-12-20 07:55
21
14,166 by skovacs
Mon, 2014-04-21 06:47
Hot topic Run AbinitioRelax (rosetta 3.3) on cluster
by grisha » Mon, 2011-12-12 14:20
18
13,649 by grisha
Mon, 2014-04-21 06:47
Hot topic homology modeling with end extension
by fred » Mon, 2012-10-08 14:19
19
13,637 by xpzhang
Mon, 2014-04-21 06:47
Hot topic usage of score3
by Run » Sat, 2013-09-28 02:06
16
13,231 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic -kill_hairpin error
by jadolfbr » Wed, 2011-10-05 18:53
11
12,998 by rmoretti
Mon, 2015-09-28 15:00
Normal topic Abinitio error: ERROR: Value of inactive option accessed: -in:file:frag9
by rlwoltz » Tue, 2012-09-18 14:04
11
12,401 by RAGHURAMAN
Fri, 2014-08-08 02:19
Hot topic FloppyTail bugs for N-terminal tails
by Dave C » Thu, 2012-03-01 13:06
18
12,247 by bbarryabc
Mon, 2014-04-21 06:47
Normal topic Single Strand DNA (ssDNA) 3D structure prediction
by mkoohim » Fri, 2012-04-06 00:52
4
12,236 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg_monomer mutations list: How to specify chain ID?
by cossio » Tue, 2014-12-09 14:26
13
11,924 by rmoretti
Thu, 2016-04-28 16:43
Hot topic membrane scoring function performance
by tevang » Wed, 2013-03-20 08:40
15
11,863 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems when running Rosetta VIP with cofactors
by Basantab » Fri, 2013-04-26 13:31
14
11,695 by Basantab
Mon, 2014-04-21 06:47
Normal topic Rosetta-Holes Scoring Function
by kroberts » Fri, 2011-05-13 14:05
11
11,376 by rmoretti
Mon, 2014-04-21 06:47
Hot topic rosettaCM not recognizing Mn atom
by banshee » Mon, 2016-09-12 23:33
20
11,372 by rmoretti
Wed, 2018-11-21 15:45
Hot topic Fixbb Multiple Resfiles
by protos_heis » Mon, 2012-10-15 10:34
18
11,309 by protos_heis
Mon, 2014-04-21 06:47
Normal topic the extracted pdb file
by benniu2004 » Fri, 2013-01-04 17:55
12
10,752 by benniu2004
Mon, 2014-04-21 06:47
Normal topic Scoring residue vs. organic ligand
by almeida » Tue, 2014-04-08 12:18
12
10,643 by rmoretti
Thu, 2014-04-24 14:43
Normal topic How to model missing residues on a protein from multiple PDB files?
by cossio » Fri, 2015-08-21 07:18
6
10,319 by rmoretti
Fri, 2015-09-11 13:27
Normal topic loop_length_changing
by lanselibai » Tue, 2014-10-14 04:10
14
10,206 by lanselibai
Fri, 2014-11-07 02:06
Normal topic RosettaDock - Constraints File
by edpryor » Wed, 2012-09-19 06:23
9
9,933 by joeg
Mon, 2014-04-21 06:47
Normal topic About loophash and batchrelax.
by Run » Mon, 2013-07-22 23:54
14
9,801 by Run
Mon, 2014-04-21 06:48
Normal topic in silico affinity maturation design
by jarod » Mon, 2013-05-20 02:07
11
9,713 by jarod
Mon, 2014-04-21 06:47
Normal topic Symmetry Docking and Clustering with Ligands
by skovacs » Wed, 2012-03-07 16:46
9
9,502 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Ab-initio peptide-protein docking
by suhail » Sun, 2013-06-23 16:20
9
9,499 by rmoretti
Fri, 2016-04-29 08:57
Normal topic fragment_picker.mpi.linuxgccrelease can't find : libsqlite3.so
by starone » Mon, 2016-06-20 19:22
11
9,394 by starone
Fri, 2016-06-24 18:29
Normal topic Runnig Abinitio & score app
by Gaurav_kumar » Wed, 2011-11-23 20:45
9
9,384 by rmoretti
Mon, 2014-04-21 06:47
Normal topic fixing disulfides in homolgy modeling
by pdbb » Wed, 2013-02-13 11:43
10
9,236 by kamau
Mon, 2014-09-22 09:39
Normal topic ddg_monomer problem
by deltag » Wed, 2012-04-04 07:53
11
9,217 by smlewis
Mon, 2014-04-21 06:47
Normal topic No output pdb files after docking protein and DNA/RNA
by yzq » Thu, 2012-10-25 08:23
11
9,063 by rmoretti
Fri, 2016-06-17 10:22
Normal topic demo of molecular replacement with rosetta (mr_rosetta)
by wenchangyu2008 » Sun, 2011-03-20 05:23
8
8,889 by astrofunk12
Mon, 2014-04-21 06:47
Normal topic [SOLVED] swamped memory
by fred » Fri, 2011-09-16 08:19
13
8,886 by fred
Mon, 2014-04-21 06:47
Normal topic "ddg_monomer.linuxgccrelease" by following "High Resolution Protocol"
by lanselibai » Wed, 2014-10-01 09:54
7
8,481 by lanselibai
Sat, 2015-01-03 08:18
Normal topic Questions for "modeling_instructions.pdf" in "Homology or Loop Modelling"
by lanselibai » Sun, 2014-09-21 09:02
10
8,414 by lanselibai
Tue, 2014-10-07 02:58
Normal topic A problem with "molfile_to_params.py"
by Rosettasz » Mon, 2013-08-19 19:35
10
8,294 by egecav
Mon, 2021-01-18 05:41
Normal topic Error while running Enzyme Design
by saxen » Fri, 2011-10-21 15:46
11
8,284 by akpole
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax usage (3.4)
by atruong » Fri, 2012-10-12 13:38
12
8,189 by atruong
Mon, 2014-04-21 06:47
Normal topic How to use -cst_fa_file and -relax:constrain_relax_to_native_coords at the same time
by Anatol » Thu, 2012-11-29 14:12
11
8,188 by smlewis
Mon, 2014-04-21 06:47
Normal topic docking energies - deltadeltaG calculation
by ast » Fri, 2013-07-19 07:30
5
8,043 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Missing "Bio.PDB" module when running "remove_loop_coords.py"
by lanselibai » Mon, 2014-09-29 04:34
6
8,019 by lanselibai
Wed, 2014-10-01 02:13
Hot topic Errors in Getting Erraser to run
by belousoff » Thu, 2017-06-01 16:13
15
8,008 by belousoff
Mon, 2017-06-26 16:46
Normal topic fragment picker does not follow dihedral constraints
by attesor » Tue, 2016-05-24 23:22
12
7,887 by smlewis
Wed, 2016-08-17 07:56
Normal topic Rosetta scoring
by Dimitrov » Thu, 2012-09-20 01:54
7
7,864 by attesor
Mon, 2014-04-21 06:47
Normal topic Rosetta residue design for DNA binding
by deltag » Wed, 2012-12-12 11:35
5
7,702 by deltag
Mon, 2014-04-21 06:47
Normal topic Syntax to build a silent file
by lanselibai » Fri, 2014-09-26 09:13
8
7,601 by lanselibai
Tue, 2014-09-30 03:45
Normal topic Don't know how to extract scores from a RNA de novo silent file.
by Basantab » Wed, 2011-11-23 17:27
10
7,563 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaDNA error
by deltag » Fri, 2012-12-07 06:09
10
7,358 by deltag
Mon, 2014-04-21 06:47
Normal topic ab initio membrane error (frag9 file...)
by almeida » Mon, 2012-07-30 08:53
9
7,299 by rmoretti
Tue, 2014-08-12 08:15
Normal topic Parse error while reading in XML file in ROSETTA Scripts
by rweisse » Fri, 2014-08-29 03:24
5
7,292 by a-eatemadi@razi...
Sun, 2017-08-06 03:49
Normal topic Camelid antibody (VHH) modelling
by Ayoub Ksouri » Tue, 2017-04-04 22:52
13
7,171 by Ayoub Ksouri
Wed, 2017-04-19 15:16
Normal topic cluster.mpi.linuxgccrelease failed
by fred » Mon, 2014-02-24 12:11
3
6,972 by fred
Thu, 2014-03-27 11:29
Normal topic neutral N-term and C-term
by nawsad » Sun, 2013-06-09 10:20
7
6,933 by helenah
Thu, 2020-10-08 05:29
Normal topic ORBITAL records in self generated .params (ligands)
by ast » Thu, 2014-03-06 07:22
9
6,883 by ast
Thu, 2014-03-13 07:17
Normal topic rosetta_2013wk52: make_fragments.pl failed
by fred » Thu, 2014-01-30 12:41
6
6,825 by rmoretti
Fri, 2014-02-07 08:01
Normal topic Problems with Ligand Docking
by saxen » Fri, 2011-08-19 00:19
8
6,802 by glemmon
Mon, 2014-04-21 06:47
Normal topic how to repacking loop while freezing other residues?
by jfhuang » Wed, 2012-07-25 06:59
10
6,751 by jfhuang
Mon, 2014-04-21 06:47
Normal topic Should FastRelax be commented out in Calculate_protein_protein_ddg demo?
by cossio » Mon, 2016-10-31 12:01
11
6,637 by cossio
Mon, 2016-11-21 07:56
Normal topic modeling phosphorylated residue
by rosetter » Fri, 2011-03-18 08:13
7
6,592 by smlewis
Mon, 2014-04-21 06:47
Normal topic cryptic error message from remodel in rosetta_scripts
by petrikigor » Mon, 2012-12-03 15:13
9
6,548 by petrikigor
Mon, 2014-04-21 06:47
Normal topic loop re-modeling std::out_of_range
by rlwoltz » Tue, 2013-03-12 18:11
9
6,541 by smlewis
Mon, 2014-04-21 06:47
Hot topic Folppy Tail and Constraints
by sfulad2 » Fri, 2017-05-12 12:23
15
6,504 by smlewis
Fri, 2017-09-08 09:16
Normal topic to create the template pdb file
by benniu2004 » Sat, 2012-12-29 23:04
8
6,496 by benniu2004
Mon, 2014-04-21 06:47
Normal topic Where is the RosettaHoles2 executable?
by lah435 » Mon, 2012-06-04 15:15
11
6,478 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ensemble Docking in Rosetta3.5?
by protos_heis » Fri, 2015-05-22 06:42
7
6,448 by protos_heis
Mon, 2015-06-08 07:00
Normal topic problems in InterfaceAnalyzer analysis
by chenchaozhao » Fri, 2011-12-02 23:36
9
6,426 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking with constraints
by ytao » Tue, 2013-04-02 09:45
6
6,382 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to define pi-pi stacking in cst file?
by lzx32 » Mon, 2011-07-04 23:47
6
6,352 by lzx32
Mon, 2014-04-21 06:47
Normal topic Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-'
by AG88 » Thu, 2011-11-03 01:25
4
6,273 by weitzner
Mon, 2014-04-21 06:47
Normal topic parameterizing new residues
by chiendarret » Fri, 2012-02-03 22:59
3
6,214 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Inserting residues using RosettaRemodel
by eleishaj » Tue, 2015-11-24 08:54
7
6,179 by eyong123
Wed, 2015-12-09 07:17
Normal topic fixbb design using damped LJ
by Anonymous » Fri, 2012-08-17 03:51
8
6,174 by Anonymous
Mon, 2014-04-21 06:47
Normal topic symmetric docking and constraints
by ytao » Thu, 2013-05-02 12:08
5
6,136 by attesor
Wed, 2015-10-21 13:53
Normal topic "OSError: [Errno 2]” in “clustering.py”
by lanselibai » Sat, 2014-10-11 14:30
4
6,133 by lanselibai
Fri, 2014-10-17 05:10
Normal topic Cannot get a negative score after relax
by kxiao » Tue, 2014-01-28 22:28
6
6,111 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Fold tree C->N: RosettaScripts
by aroop » Wed, 2013-02-13 10:31
8
6,099 by smlewis
Mon, 2014-04-21 06:47
Normal topic Incorrect Jump being set in RosettaScripts docking mover
by weehee » Fri, 2012-06-08 10:23
6
6,080 by rmoretti
Mon, 2014-04-21 06:47
Normal topic protein structure prediction using relax -- high-powered jobs
by rfieldhouse » Mon, 2011-05-30 18:29
7
5,994 by dimaio
Mon, 2014-04-21 06:47
Normal topic Distinctions between InterfaceAnalyzer and RosettaScript
by achambe » Wed, 2015-06-17 10:14
6
5,984 by rmoretti
Wed, 2015-09-02 12:43
Normal topic Problem about energy score
by tfliu » Tue, 2013-11-05 02:09
7
5,950 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic segmentation fault after core.kinematics.FoldTree in homology modeling
by pdbb » Mon, 2012-10-08 14:27
7
5,927 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Why do non proten ligands get a very high score in kinematic loop modeling/ in general?
by a_s_a » Wed, 2011-06-15 00:03
8
5,921 by a_s_a
Mon, 2014-04-21 06:47
Normal topic [SOLVED]core.io.silent: [ WARNING ] ...
by fred » Wed, 2011-10-05 07:38
8
5,905 by fred
Mon, 2014-04-21 06:47
Normal topic problem creating lips4 file using run_lips.pl
by adva » Sun, 2015-02-15 06:22
5
5,863 by linucks
Mon, 2016-06-20 12:02
Normal topic mover "RepackMinimize" does not support chains > 2?
by jarod » Mon, 2013-05-20 02:17
6
5,852 by jarod
Mon, 2014-04-21 06:47
Normal topic analysis of clustering
by loris.moretti » Thu, 2012-04-19 02:52
3
5,850 by rmoretti
Mon, 2014-04-21 06:47
Normal topic RosettaRemodel can not work now?
by myputer » Tue, 2013-08-13 16:56
7
5,792 by rmoretti
Mon, 2014-04-21 06:48
Normal topic How can I prevent coordinates shift when using "loopmodel.linuxgccrelease"?
by lanselibai » Tue, 2014-11-04 14:56
7
5,751 by lanselibai
Wed, 2014-11-12 11:17
Normal topic Conformers in EnzDes
by JorickF » Fri, 2015-03-06 04:41
5
5,712 by rmoretti
Tue, 2015-03-31 08:56

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