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Rosetta 3 - Applications
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FAQ by admin » Mon, 2010-08-30 04:18 |
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17,033 |
by admin Fri, 2015-09-04 16:17 |
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multiple template homolgy modelling (Page: 1, 2)
by pdbb » Tue, 2012-10-30 08:12 |
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57,298 |
by rmoretti Fri, 2018-05-18 12:40 |
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Fastsaxs by Pernille » Mon, 2013-07-22 07:29 |
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37,120 |
by rmoretti Mon, 2021-06-14 12:56 |
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a trouble during floppytail modeling by chenchaozhao » Tue, 2011-03-15 03:59 |
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36,426 |
by smlewis Thu, 2017-06-01 10:02 |
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Error with recognizing rotamer library atoms by oerbilgin » Fri, 2011-11-04 15:23 |
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28,038 |
by oerbilgin Mon, 2014-04-21 06:47 |
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some application troubles when using resfile flag by chenchaozhao » Tue, 2011-04-05 00:05 |
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25,819 |
by smlewis Mon, 2014-04-21 06:47 |
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csrosetta.org login by jfeuva » Tue, 2014-12-09 14:49 |
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24,352 |
by jfeuva Tue, 2014-12-09 14:49 |
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"score vs RMSD plots" & "cluster models" by lanselibai » Thu, 2014-09-25 06:51 |
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23,769 |
by lanselibai Wed, 2014-10-15 01:54 |
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ddG calculation by malkeet.singh » Sun, 2017-06-25 07:53 |
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23,543 |
by malkeet.singh Tue, 2017-11-14 04:33 |
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Syntax for relax.linuxgccrelease by lanselibai » Wed, 2014-09-24 04:34 |
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23,499 |
by lanselibai Tue, 2014-12-02 09:46 |
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What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"? by lanselibai » Fri, 2014-10-17 06:06 |
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20,916 |
by rmoretti Fri, 2014-10-17 10:17 |
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Ab initio with multiple metal ions by cheyuk » Sun, 2013-12-29 17:58 |
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19,651 |
by masterofpuppets Tue, 2015-01-27 04:26 |
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Rosetta Scripts: Loop Modeling w. Selective Repacking by aroop » Mon, 2013-01-07 08:45 |
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18,855 |
by aroop Mon, 2014-04-21 06:47 |
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Garbled Ligands from docking_protocol by skovacs » Tue, 2011-12-20 07:55 |
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18,554 |
by skovacs Mon, 2014-04-21 06:47 |
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A problem with RosettaLigand by Rosettasz » Fri, 2013-07-19 16:09 |
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18,504 |
by Rosettasz Mon, 2014-04-21 06:48 |
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Run AbinitioRelax (rosetta 3.3) on cluster by grisha » Mon, 2011-12-12 14:20 |
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17,150 |
by grisha Mon, 2014-04-21 06:47 |
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homology modeling with end extension by fred » Mon, 2012-10-08 14:19 |
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17,127 |
by xpzhang Mon, 2014-04-21 06:47 |
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-kill_hairpin error by jadolfbr » Wed, 2011-10-05 18:53 |
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16,808 |
by rmoretti Mon, 2015-09-28 15:00 |
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usage of score3 by Run » Sat, 2013-09-28 02:06 |
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16,501 |
by jadolfbr Mon, 2014-04-21 06:48 |
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ddg_monomer mutations list: How to specify chain ID? by cossio » Tue, 2014-12-09 14:26 |
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16,223 |
by rmoretti Thu, 2016-04-28 16:43 |
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rosettaCM not recognizing Mn atom by banshee » Mon, 2016-09-12 23:33 |
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15,922 |
by rmoretti Wed, 2018-11-21 15:45 |
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Abinitio error: ERROR: Value of inactive option accessed: -in:file:frag9 by rlwoltz » Tue, 2012-09-18 14:04 |
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15,829 |
by RAGHURAMAN Fri, 2014-08-08 02:19 |
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FloppyTail bugs for N-terminal tails by Dave C » Thu, 2012-03-01 13:06 |
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15,323 |
by bbarryabc Mon, 2014-04-21 06:47 |
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Fixbb Multiple Resfiles by protos_heis » Mon, 2012-10-15 10:34 |
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14,719 |
by protos_heis Mon, 2014-04-21 06:47 |
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membrane scoring function performance by tevang » Wed, 2013-03-20 08:40 |
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14,641 |
by smlewis Mon, 2014-04-21 06:47 |
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Problems when running Rosetta VIP with cofactors by Basantab » Fri, 2013-04-26 13:31 |
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14,491 |
by Basantab Mon, 2014-04-21 06:47 |
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Single Strand DNA (ssDNA) 3D structure prediction by mkoohim » Fri, 2012-04-06 00:52 |
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14,337 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta-Holes Scoring Function by kroberts » Fri, 2011-05-13 14:05 |
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14,321 |
by rmoretti Mon, 2014-04-21 06:47 |
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the extracted pdb file by benniu2004 » Fri, 2013-01-04 17:55 |
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13,433 |
by benniu2004 Mon, 2014-04-21 06:47 |
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Scoring residue vs. organic ligand by almeida » Tue, 2014-04-08 12:18 |
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13,332 |
by rmoretti Thu, 2014-04-24 14:43 |
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loop_length_changing by lanselibai » Tue, 2014-10-14 04:10 |
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13,288 |
by lanselibai Fri, 2014-11-07 02:06 |
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fragment_picker.mpi.linuxgccrelease can't find : libsqlite3.so by starone » Mon, 2016-06-20 19:22 |
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12,893 |
by starone Fri, 2016-06-24 18:29 |
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How to model missing residues on a protein from multiple PDB files? by cossio » Fri, 2015-08-21 07:18 |
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12,800 |
by rmoretti Fri, 2015-09-11 13:27 |
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About loophash and batchrelax. by Run » Mon, 2013-07-22 23:54 |
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12,696 |
by Run Mon, 2014-04-21 06:48 |
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RosettaDock - Constraints File by edpryor » Wed, 2012-09-19 06:23 |
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12,328 |
by joeg Mon, 2014-04-21 06:47 |
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in silico affinity maturation design by jarod » Mon, 2013-05-20 02:07 |
11 |
12,068 |
by jarod Mon, 2014-04-21 06:47 |
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ddg_monomer problem by deltag » Wed, 2012-04-04 07:53 |
11 |
11,890 |
by smlewis Mon, 2014-04-21 06:47 |
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[SOLVED] swamped memory by fred » Fri, 2011-09-16 08:19 |
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11,770 |
by fred Mon, 2014-04-21 06:47 |
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No output pdb files after docking protein and DNA/RNA by yzq » Thu, 2012-10-25 08:23 |
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11,675 |
by rmoretti Fri, 2016-06-17 10:22 |
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Ab-initio peptide-protein docking by suhail » Sun, 2013-06-23 16:20 |
9 |
11,653 |
by rmoretti Fri, 2016-04-29 08:57 |
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fixing disulfides in homolgy modeling by pdbb » Wed, 2013-02-13 11:43 |
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11,572 |
by kamau Mon, 2014-09-22 09:39 |
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Errors in Getting Erraser to run by belousoff » Thu, 2017-06-01 16:13 |
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11,510 |
by belousoff Mon, 2017-06-26 16:46 |
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Runnig Abinitio & score app by Gaurav_kumar » Wed, 2011-11-23 20:45 |
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11,384 |
by rmoretti Mon, 2014-04-21 06:47 |
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Symmetry Docking and Clustering with Ligands by skovacs » Wed, 2012-03-07 16:46 |
9 |
11,375 |
by Anonymous Mon, 2014-04-21 06:47 |
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demo of molecular replacement with rosetta (mr_rosetta) by wenchangyu2008 » Sun, 2011-03-20 05:23 |
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10,861 |
by astrofunk12 Mon, 2014-04-21 06:47 |
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AbinitioRelax usage (3.4) by atruong » Fri, 2012-10-12 13:38 |
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10,789 |
by atruong Mon, 2014-04-21 06:47 |
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A problem with "molfile_to_params.py" by Rosettasz » Mon, 2013-08-19 19:35 |
10 |
10,695 |
by egecav Mon, 2021-01-18 05:41 |
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Error while running Enzyme Design by saxen » Fri, 2011-10-21 15:46 |
11 |
10,647 |
by akpole Mon, 2014-04-21 06:47 |
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fragment picker does not follow dihedral constraints by attesor » Tue, 2016-05-24 23:22 |
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10,498 |
by smlewis Wed, 2016-08-17 07:56 |
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"ddg_monomer.linuxgccrelease" by following "High Resolution Protocol" by lanselibai » Wed, 2014-10-01 09:54 |
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10,485 |
by lanselibai Sat, 2015-01-03 08:18 |
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Questions for "modeling_instructions.pdf" in "Homology or Loop Modelling" by lanselibai » Sun, 2014-09-21 09:02 |
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10,477 |
by lanselibai Tue, 2014-10-07 02:58 |
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How to use -cst_fa_file and -relax:constrain_relax_to_native_coords at the same time by Anatol » Thu, 2012-11-29 14:12 |
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10,206 |
by smlewis Mon, 2014-04-21 06:47 |
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Camelid antibody (VHH) modelling by Ayoub Ksouri » Tue, 2017-04-04 22:52 |
13 |
10,070 |
by Ayoub Ksouri Wed, 2017-04-19 15:16 |
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Missing "Bio.PDB" module when running "remove_loop_coords.py" by lanselibai » Mon, 2014-09-29 04:34 |
6 |
9,981 |
by lanselibai Wed, 2014-10-01 02:13 |
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Don't know how to extract scores from a RNA de novo silent file. by Basantab » Wed, 2011-11-23 17:27 |
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9,676 |
by smlewis Mon, 2014-04-21 06:47 |
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Syntax to build a silent file by lanselibai » Fri, 2014-09-26 09:13 |
8 |
9,615 |
by lanselibai Tue, 2014-09-30 03:45 |
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docking energies - deltadeltaG calculation by ast » Fri, 2013-07-19 07:30 |
5 |
9,575 |
by rmoretti Mon, 2014-04-21 06:48 |
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Folppy Tail and Constraints by sfulad2 » Fri, 2017-05-12 12:23 |
15 |
9,562 |
by smlewis Fri, 2017-09-08 09:16 |
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Rosetta scoring by Dimitrov » Thu, 2012-09-20 01:54 |
7 |
9,538 |
by attesor Mon, 2014-04-21 06:47 |
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RosettaDNA error by deltag » Fri, 2012-12-07 06:09 |
10 |
9,488 |
by deltag Mon, 2014-04-21 06:47 |
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ab initio membrane error (frag9 file...) by almeida » Mon, 2012-07-30 08:53 |
9 |
9,193 |
by rmoretti Tue, 2014-08-12 08:15 |
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Parse error while reading in XML file in ROSETTA Scripts by rweisse » Fri, 2014-08-29 03:24 |
5 |
9,151 |
by a-eatemadi@razi... Sun, 2017-08-06 03:49 |
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Should FastRelax be commented out in Calculate_protein_protein_ddg demo? by cossio » Mon, 2016-10-31 12:01 |
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9,055 |
by cossio Mon, 2016-11-21 07:56 |
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Rosetta residue design for DNA binding by deltag » Wed, 2012-12-12 11:35 |
5 |
8,959 |
by deltag Mon, 2014-04-21 06:47 |
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ORBITAL records in self generated .params (ligands) by ast » Thu, 2014-03-06 07:22 |
9 |
8,811 |
by ast Thu, 2014-03-13 07:17 |
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neutral N-term and C-term by nawsad » Sun, 2013-06-09 10:20 |
7 |
8,719 |
by helenah Thu, 2020-10-08 05:29 |
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Problems with Ligand Docking by saxen » Fri, 2011-08-19 00:19 |
8 |
8,541 |
by glemmon Mon, 2014-04-21 06:47 |
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loop re-modeling std::out_of_range by rlwoltz » Tue, 2013-03-12 18:11 |
9 |
8,538 |
by smlewis Mon, 2014-04-21 06:47 |
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how to repacking loop while freezing other residues? by jfhuang » Wed, 2012-07-25 06:59 |
10 |
8,514 |
by jfhuang Mon, 2014-04-21 06:47 |
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to create the template pdb file by benniu2004 » Sat, 2012-12-29 23:04 |
8 |
8,407 |
by benniu2004 Mon, 2014-04-21 06:47 |
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Where is the RosettaHoles2 executable? by lah435 » Mon, 2012-06-04 15:15 |
11 |
8,377 |
by smlewis Mon, 2014-04-21 06:47 |
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problems in InterfaceAnalyzer analysis by chenchaozhao » Fri, 2011-12-02 23:36 |
9 |
8,349 |
by smlewis Mon, 2014-04-21 06:47 |
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rosetta_2013wk52: make_fragments.pl failed by fred » Thu, 2014-01-30 12:41 |
6 |
8,348 |
by rmoretti Fri, 2014-02-07 08:01 |
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cryptic error message from remodel in rosetta_scripts by petrikigor » Mon, 2012-12-03 15:13 |
9 |
8,302 |
by petrikigor Mon, 2014-04-21 06:47 |
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modeling phosphorylated residue by rosetter » Fri, 2011-03-18 08:13 |
7 |
8,302 |
by smlewis Mon, 2014-04-21 06:47 |
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Surface Docking Application Crash by dkozuch » Sat, 2017-09-02 18:32 |
12 |
8,279 |
by Anpu Tue, 2018-09-25 19:06 |
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Ensemble Docking in Rosetta3.5? by protos_heis » Fri, 2015-05-22 06:42 |
7 |
8,235 |
by protos_heis Mon, 2015-06-08 07:00 |
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Segmentation fault (core dumped) in rosetta_scripts.default.linuxgccrelease after blueprint file reading by Corvin » Tue, 2020-06-30 00:36 |
12 |
8,132 |
by Corvin Tue, 2020-11-10 01:22 |
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Inserting residues using RosettaRemodel by eleishaj » Tue, 2015-11-24 08:54 |
7 |
8,120 |
by eyong123 Wed, 2015-12-09 07:17 |
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Distinctions between InterfaceAnalyzer and RosettaScript by achambe » Wed, 2015-06-17 10:14 |
6 |
8,028 |
by rmoretti Wed, 2015-09-02 12:43 |
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cluster.mpi.linuxgccrelease failed by fred » Mon, 2014-02-24 12:11 |
3 |
7,902 |
by fred Thu, 2014-03-27 11:29 |
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How to define pi-pi stacking in cst file? by lzx32 » Mon, 2011-07-04 23:47 |
6 |
7,900 |
by lzx32 Mon, 2014-04-21 06:47 |
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Fold tree C->N: RosettaScripts by aroop » Wed, 2013-02-13 10:31 |
8 |
7,823 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking with constraints by ytao » Tue, 2013-04-02 09:45 |
6 |
7,791 |
by smlewis Mon, 2014-04-21 06:47 |
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[SOLVED]core.io.silent: [ WARNING ] ... by fred » Wed, 2011-10-05 07:38 |
8 |
7,739 |
by fred Mon, 2014-04-21 06:47 |
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fixbb design using damped LJ by Anonymous » Fri, 2012-08-17 03:51 |
8 |
7,686 |
by Anonymous Mon, 2014-04-21 06:47 |
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Why do non proten ligands get a very high score in kinematic loop modeling/ in general? by a_s_a » Wed, 2011-06-15 00:03 |
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7,661 |
by a_s_a Mon, 2014-04-21 06:47 |
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Cannot get a negative score after relax by kxiao » Tue, 2014-01-28 22:28 |
6 |
7,639 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-' by AG88 » Thu, 2011-11-03 01:25 |
4 |
7,530 |
by weitzner Mon, 2014-04-21 06:47 |
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parameterizing new residues by chiendarret » Fri, 2012-02-03 22:59 |
3 |
7,506 |
by rmoretti Mon, 2014-04-21 06:47 |
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How can I prevent coordinates shift when using "loopmodel.linuxgccrelease"? by lanselibai » Tue, 2014-11-04 14:56 |
7 |
7,502 |
by lanselibai Wed, 2014-11-12 11:17 |
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Problem about energy score by tfliu » Tue, 2013-11-05 02:09 |
7 |
7,493 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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symmetric docking and constraints by ytao » Thu, 2013-05-02 12:08 |
5 |
7,484 |
by attesor Wed, 2015-10-21 13:53 |
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protein structure prediction using relax -- high-powered jobs by rfieldhouse » Mon, 2011-05-30 18:29 |
7 |
7,476 |
by dimaio Mon, 2014-04-21 06:47 |
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Incorrect Jump being set in RosettaScripts docking mover by weehee » Fri, 2012-06-08 10:23 |
6 |
7,418 |
by rmoretti Mon, 2014-04-21 06:47 |
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Including waters in RosettaCM by ajkal » Thu, 2017-04-27 11:59 |
9 |
7,353 |
by rpavlov Tue, 2017-06-06 11:45 |
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Abinitio (3.4) Error: no fragment to compute secondary structure by skovacs » Tue, 2012-09-18 13:49 |
6 |
7,330 |
by skovacs Mon, 2014-04-21 06:47 |
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segmentation fault after core.kinematics.FoldTree in homology modeling by pdbb » Mon, 2012-10-08 14:27 |
7 |
7,311 |
by rmoretti Mon, 2014-04-21 06:47 |
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About scorefunction. by Run » Mon, 2013-09-09 23:08 |
7 |
7,291 |
by rmoretti Mon, 2014-04-21 06:48 |
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mover "RepackMinimize" does not support chains > 2? by jarod » Mon, 2013-05-20 02:17 |
6 |
7,290 |
by jarod Mon, 2014-04-21 06:47 |
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