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Rosetta 3 - Applications

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Normal topic RosettaRemodel can not work now?
by myputer » Tue, 2013-08-13 16:56
7
7,702 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Fragment files for membrane_abinitio application
by sumukh21 » Sun, 2011-02-13 20:34
7
7,061 by yarovoy
Mon, 2014-04-21 06:47
Normal topic modeling phosphorylated residue
by rosetter » Fri, 2011-03-18 08:13
7
8,749 by smlewis
Mon, 2014-04-21 06:47
Normal topic About scorefunction.
by Run » Mon, 2013-09-09 23:08
7
7,798 by rmoretti
Mon, 2014-04-21 06:48
Normal topic variable length fragments for Ab initio
by attesor » Wed, 2015-07-01 06:13
7
7,209 by rmoretti
Tue, 2015-08-18 16:47
Normal topic Problem about energy score
by tfliu » Tue, 2013-11-05 02:09
7
7,898 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic How can I prevent coordinates shift when using "loopmodel.linuxgccrelease"?
by lanselibai » Tue, 2014-11-04 14:56
7
7,929 by lanselibai
Wed, 2014-11-12 11:17
Normal topic ERROR: Unable to fill in missing atoms.
by mieczyslaw » Tue, 2020-10-20 09:43
7
6,633 by rayyoung
Thu, 2021-11-18 10:13
Normal topic SnugDocking a VHH:antigen complex possible?
by David Weis » Thu, 2017-02-16 05:57
7
6,227 by rmoretti
Thu, 2017-07-06 13:00
Normal topic Can rosetta generate a centroid model based on the rna sequence?
by yels » Fri, 2021-03-26 04:06
7
3,284 by yels
Wed, 2021-03-31 18:31
Normal topic H3 modeling takes 10 days more?
by jessye » Fri, 2017-10-27 03:11
7
5,500 by jessye
Fri, 2017-11-03 20:15
Normal topic running in MPI mode and multiple scores per output PDB file?
by dantimatter » Wed, 2019-10-30 09:42
7
5,325 by dantimatter
Wed, 2019-11-06 09:51
Normal topic RosettaLigand - strange score behavior
by Gerdes » Mon, 2014-02-03 02:24
6
7,075 by Gerdes
Fri, 2014-02-07 06:48
Normal topic Can't generate a cst file to use with ddg_monomer application
by ctqwong » Sat, 2021-03-13 03:53
6
3,132 by ctqwong
Thu, 2021-03-18 02:04
Normal topic Can I believe the antibody design result?
by Sunyp_IM » Mon, 2020-11-30 03:29
6
3,349 by jadolfbr
Sun, 2020-12-06 17:41
Normal topic Enzdes score file discrepancy between generated pdb and scores.out
by eyong123 » Wed, 2015-03-25 08:52
6
7,490 by eyong123
Mon, 2015-06-29 04:44
Normal topic EMERALD method not working, Rosetta version not available for download
by seba » Thu, 2023-05-04 08:14
6
1,628 by rmoretti
Mon, 2023-07-10 08:57
Normal topic How to define pi-pi stacking in cst file?
by lzx32 » Mon, 2011-07-04 23:47
6
8,307 by lzx32
Mon, 2014-04-21 06:47
Normal topic Problems with ligand when running RosettaLigand
by Cat » Mon, 2013-05-20 15:58
6
7,139 by Aben
Tue, 2023-04-18 01:31
Normal topic docking in rosetta 3.3
by Ammu » Thu, 2012-03-15 12:03
6
6,207 by smlewis
Mon, 2014-04-21 06:47
Normal topic Results of enzyme_design not consistent with Resfile
by yogeshkd » Thu, 2013-02-14 15:56
6
6,685 by yogeshkd
Mon, 2014-04-21 06:47
Normal topic pepspec anchor dock
by Astghik » Tue, 2020-10-20 05:31
6
3,653 by Pappmaschee
Thu, 2020-12-17 02:24
Normal topic ab inito memberane(error in alignblast.pl)
by kingljy » Tue, 2011-05-03 23:41
6
7,260 by karthishanmugam
Mon, 2014-04-21 06:47
Normal topic Relax a structure with >1 copy of a modified residue fails [Solved]
by franfdez » Wed, 2012-02-08 00:47
6
6,584 by franfdez
Mon, 2014-04-21 06:47
Normal topic Help with enzyme design
by lzx32 » Fri, 2011-04-08 22:29
6
6,708 by lzx32
Mon, 2014-04-21 06:47
Normal topic Rotamers used in fixbb
by lanselibai » Thu, 2014-11-06 02:47
6
6,266 by lanselibai
Tue, 2014-11-11 15:28
Normal topic rosetta_2013wk52: make_fragments.pl failed
by fred » Thu, 2014-01-30 12:41
6
8,769 by rmoretti
Fri, 2014-02-07 08:01
Normal topic scoring of beta sandwich protein
by attesor » Mon, 2014-11-17 08:24
6
6,226 by rmoretti
Thu, 2014-11-20 10:46
Normal topic enzyme design and output_matchres_only
by petrikigor » Wed, 2012-10-24 18:45
6
5,418 by petrikigor
Mon, 2014-04-21 06:47
Normal topic mover "RepackMinimize" does not support chains > 2?
by jarod » Mon, 2013-05-20 02:17
6
7,650 by jarod
Mon, 2014-04-21 06:47
Normal topic Docking with constraints
by ytao » Tue, 2013-04-02 09:45
6
8,120 by smlewis
Mon, 2014-04-21 06:47
Normal topic Line search failed even after resetting Hessian
by Loki01 » Wed, 2017-12-13 16:52
6
6,156 by Loki01
Thu, 2018-02-15 13:54
Normal topic Is Biopython required to run pdb_renumber.py?
by ljjjxay » Wed, 2023-11-22 20:00
6
898 by ljjjxay
Wed, 2023-12-06 19:24
Normal topic Missing "Bio.PDB" module when running "remove_loop_coords.py"
by lanselibai » Mon, 2014-09-29 04:34
6
10,405 by lanselibai
Wed, 2014-10-01 02:13
Normal topic Multistate design output
by tong » Wed, 2018-06-20 00:21
6
4,269 by tong
Sun, 2018-06-24 23:30
Normal topic Cannot get a negative score after relax
by kxiao » Tue, 2014-01-28 22:28
6
7,982 by rmoretti
Mon, 2014-04-21 06:48
Normal topic "sparks failed" error when running "make_fragments.pl"?
by Danielsebas » Tue, 2019-09-03 03:43
6
4,260 by Jacob_Verburgt
Tue, 2020-03-10 14:39
Normal topic FloppyTail :How to specify range of design(mutation)
by syoifczeri » Mon, 2015-11-02 04:14
6
6,627 by syoifczeri
Sat, 2015-11-07 21:42
Normal topic loop modeling during enzyme design?
by lzx32 » Wed, 2011-11-16 00:30
6
6,164 by lzx32
Mon, 2014-04-21 06:47
Normal topic Distinctions between InterfaceAnalyzer and RosettaScript
by achambe » Wed, 2015-06-17 10:14
6
8,649 by rmoretti
Wed, 2015-09-02 12:43
Normal topic ligand docking, how to combine some silent.out files into a silent_all.out file
by Ryhon Wang » Fri, 2013-12-06 01:53
6
7,469 by rmoretti
Wed, 2017-01-11 12:53
Normal topic How to model missing residues on a protein from multiple PDB files?
by cossio » Fri, 2015-08-21 07:18
6
13,492 by rmoretti
Fri, 2015-09-11 13:27
Normal topic terminal amino acids of gap has incomplete valency
by malkeet.singh » Wed, 2017-11-29 05:20
6
4,659 by rmoretti
Fri, 2017-12-01 12:05
Normal topic How to choose designed antibody
by Sunyp_IM » Wed, 2020-06-24 10:06
6
4,337 by chandana
Tue, 2022-08-09 20:27
Normal topic Enzyme design with variable CST blocks possible?
by petrikigor » Thu, 2011-10-06 11:24
6
7,348 by petrikigor
Mon, 2014-04-21 06:47
Normal topic the ddg of mutant is same as the wt
by deepanshuiitb » Wed, 2015-03-04 11:56
6
6,860 by jadolfbr
Tue, 2015-04-07 10:50
Normal topic Incorrect Jump being set in RosettaScripts docking mover
by weehee » Fri, 2012-06-08 10:23
6
7,802 by rmoretti
Mon, 2014-04-21 06:47
Normal topic symmetric design in the presence of a nonsymmetric ligand
by msardejani » Fri, 2016-09-30 15:17
6
6,351 by msardejani
Sat, 2016-10-01 12:55
Normal topic Make error during installation of updated ncbi-blast-2.9.0+-src plus error with nr-database
by Corvin » Tue, 2019-10-01 02:04
6
6,396 by Corvin
Tue, 2019-10-15 01:12
Normal topic Loop modeling - the appropriate way to model a peptide insertion?
by xding » Thu, 2018-08-02 15:30
6
4,933 by smlewis
Wed, 2018-08-08 15:48
Normal topic CS-HM-Rosetta
by pwurm » Thu, 2013-03-07 12:56
6
7,287 by Marius1987
Fri, 2016-02-05 07:20
Normal topic the flexpepdock refinement and ab-initio
by tfliu » Mon, 2013-12-23 19:17
6
6,568 by tfliu
Mon, 2014-04-21 06:48
Normal topic Error src/core/scoring/MembraneTopology.cc line: 139
by Daniel Hall » Thu, 2017-07-13 04:58
6
6,088 by rmoretti
Tue, 2017-07-18 09:00
Normal topic Comparative modeling stops with "no more batches to process... " / no output
by eskici » Tue, 2012-08-28 12:13
6
6,444 by eskici
Mon, 2014-04-21 06:47
Normal topic Abinitio (3.4) Error: no fragment to compute secondary structure
by skovacs » Tue, 2012-09-18 13:49
6
7,732 by skovacs
Mon, 2014-04-21 06:47
Normal topic Translate mover chain X doesnot exist.
by surya » Thu, 2020-07-09 08:36
6
3,493 by rmoretti
Tue, 2020-07-14 10:54
Normal topic Abinitio doesn't run but does not give output or error
by Irving » Fri, 2016-10-28 10:04
6
5,982 by rmoretti
Mon, 2017-01-23 08:52
Normal topic Problem with hotspot constraints.
by jarek » Wed, 2012-10-17 03:22
6
5,962 by xfliu
Mon, 2014-04-21 06:47
Normal topic jd2 quits before reaching -nstruct # in roseta_scripts.mpi.linuxgccrelease
by fradom » Mon, 2017-11-27 02:55
6
5,057 by fradom
Tue, 2017-12-05 01:52
Normal topic fragment_picker:[ ERROR ] UtilityExitException ERROR: can't open file: $ROSETTA/tools/fragment_tools/vall.jul19.2011.gz
by yueyuedake » Wed, 2023-07-12 03:36
6
1,188 by yueyuedake
Sun, 2023-07-16 19:17
Normal topic protein docking failed
by albumns » Thu, 2012-11-08 02:59
6
6,313 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Steric clashes in RNA minimization
by brianmlee » Tue, 2014-11-18 18:29
5
6,261 by brianmlee
Mon, 2014-11-24 19:40
Normal topic Does linker modeling exist?
by aroop » Wed, 2012-02-22 07:34
5
5,456 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetric Minimization
by aroop » Mon, 2012-12-17 11:45
5
4,806 by aroop
Mon, 2014-04-21 06:47
Normal topic How to minimize the decoys obtained from backrub?
by Vedasheersh » Wed, 2017-06-14 10:26
5
4,385 by SenyorDrew
Fri, 2017-06-30 09:47
Normal topic RosettaVIP: ERROR: seqpos <= size()
by Anonymous » Thu, 2012-07-26 07:30
5
6,709 by Anonymous
Mon, 2014-04-21 06:47
Normal topic rosetta app
by MA » Wed, 2017-07-05 06:52
5
4,186 by smlewis
Tue, 2017-07-11 07:53
Normal topic ddg dG_separate
by gw » Wed, 2012-08-22 11:25
5
6,317 by smlewis
Mon, 2014-04-21 06:47
Normal topic trRosetta protocol Segmentation Fault
by nc-ring » Wed, 2021-04-28 11:57
5
2,872 by nc-ring
Tue, 2021-05-04 12:26
Normal topic problem creating lips4 file using run_lips.pl
by adva » Sun, 2015-02-15 06:22
5
7,706 by linucks
Mon, 2016-06-20 12:02
Normal topic Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking
by Corvin » Wed, 2019-06-19 08:40
5
4,277 by rmoretti
Tue, 2019-07-09 10:13
Normal topic AbinitioRelax with native fragments
by ks » Mon, 2016-09-05 03:03
5
5,490 by ks
Mon, 2016-09-12 03:14
Normal topic RosettaCM Biological Assembly
by jrcf » Mon, 2015-10-26 11:01
5
7,490 by rmoretti
Tue, 2015-11-24 15:30
Normal topic matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302
by siciliu » Fri, 2014-03-21 17:51
5
6,438 by siciliu
Thu, 2014-04-10 09:50
Normal topic RosettaMP: issue with generating .lips4 file
by ksy141 » Mon, 2019-01-21 17:17
5
3,645 by noahC_noahDo
Fri, 2020-11-20 11:29
Normal topic -score_app:linmin flag not working
by fglaser » Tue, 2011-03-01 06:04
5
5,678 by smlewis
Mon, 2014-04-21 06:47
Normal topic Antibody protocol: unusual antibodies, and chainbreaks
by Cyril Cros » Mon, 2014-07-21 17:03
5
6,434 by Cyril Cros
Tue, 2014-11-25 08:21
Normal topic ab initio protein prediction using homologs
by justin » Mon, 2012-02-13 07:52
5
5,897 by justin
Mon, 2014-04-21 06:47
Normal topic Rosetta residue design for DNA binding
by deltag » Wed, 2012-12-12 11:35
5
9,275 by deltag
Mon, 2014-04-21 06:47
Normal topic molfile to params polymer python errors
by tsztain » Sun, 2018-12-02 15:38
5
5,218 by tsztain
Tue, 2018-12-11 13:41
Normal topic symmetrical membrane modeling
by rlwoltz » Tue, 2013-10-29 03:41
5
6,180 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else?
by dantimatter » Wed, 2019-10-16 14:59
5
3,516 by dantimatter
Wed, 2019-10-30 09:43
Normal topic Pmut_scan with symmetry
by felipet » Thu, 2015-02-05 08:53
5
5,989 by felipet
Wed, 2015-02-11 05:13
Normal topic Docking flags
by AmelieH » Thu, 2014-11-13 08:46
5
5,473 by AmelieH
Wed, 2014-11-19 11:26
Normal topic P-P docking with suitable constraint type
by Yao Wu » Tue, 2012-11-13 18:03
5
7,132 by rmoretti
Mon, 2014-04-21 06:47
Normal topic modeling an extracellular loop of a transmembrane protein
by Hothman » Fri, 2016-08-12 06:16
5
4,919 by rmoretti
Mon, 2016-09-05 10:59
Normal topic How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure?
by Sunyp_IM » Sun, 2020-11-08 08:07
5
3,267 by Brahm Yachnin
Wed, 2020-11-18 17:21
Normal topic Conformers in EnzDes
by JorickF » Fri, 2015-03-06 04:41
5
7,309 by rmoretti
Tue, 2015-03-31 08:56
Normal topic RosettaAntibodyDesign: How can I run the protocol without allowing design?
by brspurri » Tue, 2020-05-26 08:12
5
3,065 by brspurri
Wed, 2020-06-03 13:20
Normal topic docking energies - deltadeltaG calculation
by ast » Fri, 2013-07-19 07:30
5
9,965 by rmoretti
Mon, 2014-04-21 06:48
Normal topic How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"?
by lanselibai » Mon, 2014-10-13 10:26
5
5,711 by lanselibai
Wed, 2014-10-15 03:52
Normal topic RosettaCM Tutorials
by smathersc » Wed, 2017-01-11 15:59
5
4,927 by rmoretti
Thu, 2017-01-19 09:11
Normal topic relax.linuxgccrelease in multiple processors
by jpfuenzalidawx » Thu, 2021-01-14 14:07
5
3,133 by jadolfbr
Fri, 2021-01-15 08:06
Normal topic Rna Denovo
by helderveras » Wed, 2020-05-06 08:40
5
3,185 by everyday847
Wed, 2020-05-20 08:52
Normal topic ndruns and nstruct in fixbb
by Anonymous » Tue, 2012-08-07 01:52
5
6,455 by Anonymous
Mon, 2014-04-21 06:47
Normal topic ddg_monomer conformational search...
by yperez » Wed, 2012-05-09 11:10
5
5,104 by yperez
Mon, 2014-04-21 06:47
Normal topic how to find help informations on rosetta_scripts in rosetta3.10
by xinmiaohe » Mon, 2019-08-26 14:48
5
3,277 by xinmiaohe
Tue, 2019-08-27 08:37
Normal topic a question about ligand docking
by yzhou » Wed, 2012-05-30 18:57
5
5,075 by yzhou
Mon, 2014-04-21 06:47
Normal topic How do you use two patches simulataneously with ab initio folding?
by smiruthi » Wed, 2011-12-21 15:24
5
5,519 by wangyr
Mon, 2014-04-21 06:47
Normal topic symmetric docking and constraints
by ytao » Thu, 2013-05-02 12:08
5
7,828 by attesor
Wed, 2015-10-21 13:53
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