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Rosetta 3 - Applications
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Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring by brspurri » Wed, 2017-03-29 13:19 |
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5,800 |
by matteoferla Mon, 2021-07-19 06:13 |
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Problem about energy score by tfliu » Tue, 2013-11-05 02:09 |
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7,337 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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Abinitio Relax Error from -kill_hairpins by attesor » Tue, 2014-10-28 05:33 |
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7,086 |
by rmoretti Tue, 2014-11-04 10:28 |
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Inserting residues using RosettaRemodel by eleishaj » Tue, 2015-11-24 08:54 |
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7,873 |
by eyong123 Wed, 2015-12-09 07:17 |
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Fragment files for membrane_abinitio application by sumukh21 » Sun, 2011-02-13 20:34 |
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6,414 |
by yarovoy Mon, 2014-04-21 06:47 |
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How to find cluster core structure? by assignfit » Thu, 2012-03-29 20:35 |
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6,837 |
by attesor Wed, 2017-06-14 07:32 |
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modeling phosphorylated residue by rosetter » Fri, 2011-03-18 08:13 |
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8,085 |
by smlewis Mon, 2014-04-21 06:47 |
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neutral N-term and C-term by nawsad » Sun, 2013-06-09 10:20 |
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8,525 |
by helenah Thu, 2020-10-08 05:29 |
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How to write down a connection between ligand's atom and metal ion from enzyme? by Corvin » Mon, 2021-02-15 06:54 |
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2,911 |
by aloshbau Mon, 2021-03-01 20:06 |
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suppress pdb output from backrub by attesor » Mon, 2014-10-27 11:16 |
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6,631 |
by rmoretti Mon, 2014-11-03 15:47 |
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If "clustering.py" can be used for PDBs contain two chains? by lanselibai » Wed, 2014-11-05 06:05 |
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6,697 |
by lanselibai Tue, 2014-12-02 09:43 |
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"sparks failed" error when running "make_fragments.pl"? by Danielsebas » Tue, 2019-09-03 03:43 |
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3,607 |
by Jacob_Verburgt Tue, 2020-03-10 14:39 |
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Multistate design output by tong » Wed, 2018-06-20 00:21 |
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3,675 |
by tong Sun, 2018-06-24 23:30 |
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FloppyTail :How to specify range of design(mutation) by syoifczeri » Mon, 2015-11-02 04:14 |
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6,049 |
by syoifczeri Sat, 2015-11-07 21:42 |
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rosetta_2013wk52: make_fragments.pl failed by fred » Thu, 2014-01-30 12:41 |
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8,176 |
by rmoretti Fri, 2014-02-07 08:01 |
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Incorrect Jump being set in RosettaScripts docking mover by weehee » Fri, 2012-06-08 10:23 |
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7,284 |
by rmoretti Mon, 2014-04-21 06:47 |
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Distinctions between InterfaceAnalyzer and RosettaScript by achambe » Wed, 2015-06-17 10:14 |
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7,748 |
by rmoretti Wed, 2015-09-02 12:43 |
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errors about RIFdocking by sia » Sun, 2022-07-24 20:45 |
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1,662 |
by sia Tue, 2022-08-02 20:08 |
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mover "RepackMinimize" does not support chains > 2? by jarod » Mon, 2013-05-20 02:17 |
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7,128 |
by jarod Mon, 2014-04-21 06:47 |
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How to model missing residues on a protein from multiple PDB files? by cossio » Fri, 2015-08-21 07:18 |
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12,521 |
by rmoretti Fri, 2015-09-11 13:27 |
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terminal amino acids of gap has incomplete valency by malkeet.singh » Wed, 2017-11-29 05:20 |
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4,031 |
by rmoretti Fri, 2017-12-01 12:05 |
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How to choose designed antibody by Sunyp_IM » Wed, 2020-06-24 10:06 |
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3,422 |
by chandana Tue, 2022-08-09 20:27 |
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Comparative modeling stops with "no more batches to process... " / no output by eskici » Tue, 2012-08-28 12:13 |
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5,974 |
by eskici Mon, 2014-04-21 06:47 |
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Docking with constraints by ytao » Tue, 2013-04-02 09:45 |
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7,629 |
by smlewis Mon, 2014-04-21 06:47 |
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How to define pi-pi stacking in cst file? by lzx32 » Mon, 2011-07-04 23:47 |
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7,717 |
by lzx32 Mon, 2014-04-21 06:47 |
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symmetric design in the presence of a nonsymmetric ligand by msardejani » Fri, 2016-09-30 15:17 |
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5,698 |
by msardejani Sat, 2016-10-01 12:55 |
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the ddg of mutant is same as the wt by deepanshuiitb » Wed, 2015-03-04 11:56 |
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6,287 |
by jadolfbr Tue, 2015-04-07 10:50 |
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Abinitio (3.4) Error: no fragment to compute secondary structure by skovacs » Tue, 2012-09-18 13:49 |
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7,138 |
by skovacs Mon, 2014-04-21 06:47 |
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Problem with hotspot constraints. by jarek » Wed, 2012-10-17 03:22 |
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5,396 |
by xfliu Mon, 2014-04-21 06:47 |
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Make error during installation of updated ncbi-blast-2.9.0+-src plus error with nr-database by Corvin » Tue, 2019-10-01 02:04 |
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5,640 |
by Corvin Tue, 2019-10-15 01:12 |
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ab inito memberane(error in alignblast.pl) by kingljy » Tue, 2011-05-03 23:41 |
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6,713 |
by karthishanmugam Mon, 2014-04-21 06:47 |
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Loop modeling - the appropriate way to model a peptide insertion? by xding » Thu, 2018-08-02 15:30 |
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4,307 |
by smlewis Wed, 2018-08-08 15:48 |
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Error src/core/scoring/MembraneTopology.cc line: 139 by Daniel Hall » Thu, 2017-07-13 04:58 |
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5,366 |
by rmoretti Tue, 2017-07-18 09:00 |
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protein docking failed by albumns » Thu, 2012-11-08 02:59 |
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5,825 |
by rmoretti Mon, 2014-04-21 06:47 |
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Translate mover chain X doesnot exist. by surya » Thu, 2020-07-09 08:36 |
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2,938 |
by rmoretti Tue, 2020-07-14 10:54 |
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Cannot get a negative score after relax by kxiao » Tue, 2014-01-28 22:28 |
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7,485 |
by rmoretti Mon, 2014-04-21 06:48 |
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Abinitio doesn't run but does not give output or error by Irving » Fri, 2016-10-28 10:04 |
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5,364 |
by rmoretti Mon, 2017-01-23 08:52 |
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Help with enzyme design by lzx32 » Fri, 2011-04-08 22:29 |
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6,092 |
by lzx32 Mon, 2014-04-21 06:47 |
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jd2 quits before reaching -nstruct # in roseta_scripts.mpi.linuxgccrelease by fradom » Mon, 2017-11-27 02:55 |
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4,463 |
by fradom Tue, 2017-12-05 01:52 |
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fragment_picker:[ ERROR ] UtilityExitException ERROR: can't open file: $ROSETTA/tools/fragment_tools/vall.jul19.2011.gz by yueyuedake » Wed, 2023-07-12 03:36 |
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303 |
by yueyuedake Sun, 2023-07-16 19:17 |
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docking in rosetta 3.3 by Ammu » Thu, 2012-03-15 12:03 |
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5,707 |
by smlewis Mon, 2014-04-21 06:47 |
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ligand docking, how to combine some silent.out files into a silent_all.out file by Ryhon Wang » Fri, 2013-12-06 01:53 |
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6,875 |
by rmoretti Wed, 2017-01-11 12:53 |
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Can't generate a cst file to use with ddg_monomer application by ctqwong » Sat, 2021-03-13 03:53 |
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2,504 |
by ctqwong Thu, 2021-03-18 02:04 |
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Can I believe the antibody design result? by Sunyp_IM » Mon, 2020-11-30 03:29 |
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2,702 |
by jadolfbr Sun, 2020-12-06 17:41 |
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EMERALD method not working, Rosetta version not available for download by seba » Thu, 2023-05-04 08:14 |
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586 |
by rmoretti Mon, 2023-07-10 08:57 |
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Relax a structure with >1 copy of a modified residue fails [Solved] by franfdez » Wed, 2012-02-08 00:47 |
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6,129 |
by franfdez Mon, 2014-04-21 06:47 |
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Enzdes score file discrepancy between generated pdb and scores.out by eyong123 » Wed, 2015-03-25 08:52 |
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6,771 |
by eyong123 Mon, 2015-06-29 04:44 |
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pepspec anchor dock by Astghik » Tue, 2020-10-20 05:31 |
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2,941 |
by Pappmaschee Thu, 2020-12-17 02:24 |
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CS-HM-Rosetta by pwurm » Thu, 2013-03-07 12:56 |
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6,706 |
by Marius1987 Fri, 2016-02-05 07:20 |
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the flexpepdock refinement and ab-initio by tfliu » Mon, 2013-12-23 19:17 |
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6,065 |
by tfliu Mon, 2014-04-21 06:48 |
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enzyme design and output_matchres_only by petrikigor » Wed, 2012-10-24 18:45 |
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4,925 |
by petrikigor Mon, 2014-04-21 06:47 |
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Rotamers used in fixbb by lanselibai » Thu, 2014-11-06 02:47 |
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5,706 |
by lanselibai Tue, 2014-11-11 15:28 |
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loop modeling during enzyme design? by lzx32 » Wed, 2011-11-16 00:30 |
6 |
5,527 |
by lzx32 Mon, 2014-04-21 06:47 |
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scoring of beta sandwich protein by attesor » Mon, 2014-11-17 08:24 |
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5,620 |
by rmoretti Thu, 2014-11-20 10:46 |
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RosettaLigand - strange score behavior by Gerdes » Mon, 2014-02-03 02:24 |
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6,474 |
by Gerdes Fri, 2014-02-07 06:48 |
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Problems with ligand when running RosettaLigand by Cat » Mon, 2013-05-20 15:58 |
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6,227 |
by Aben Tue, 2023-04-18 01:31 |
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Enzyme design with variable CST blocks possible? by petrikigor » Thu, 2011-10-06 11:24 |
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6,787 |
by petrikigor Mon, 2014-04-21 06:47 |
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Line search failed even after resetting Hessian by Loki01 » Wed, 2017-12-13 16:52 |
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5,438 |
by Loki01 Thu, 2018-02-15 13:54 |
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Results of enzyme_design not consistent with Resfile by yogeshkd » Thu, 2013-02-14 15:56 |
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6,202 |
by yogeshkd Mon, 2014-04-21 06:47 |
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Missing "Bio.PDB" module when running "remove_loop_coords.py" by lanselibai » Mon, 2014-09-29 04:34 |
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9,792 |
by lanselibai Wed, 2014-10-01 02:13 |
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Error during single state design by sujigeorge1979 » Sat, 2020-01-18 00:37 |
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4,465 |
by rmoretti Thu, 2020-01-30 15:42 |
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rna structure prediction by cbala » Thu, 2011-04-14 07:42 |
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5,504 |
by mkoohim Mon, 2014-04-21 06:47 |
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Antibody protocol: unusual antibodies, and chainbreaks by Cyril Cros » Mon, 2014-07-21 17:03 |
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5,837 |
by Cyril Cros Tue, 2014-11-25 08:21 |
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Error with the mpi version of simple_cycpep_predict by Florent Langenfeld » Wed, 2020-02-05 05:16 |
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2,808 |
by vmulligan Fri, 2020-04-10 02:54 |
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Rosetta RNA denovo huge memory usage (probable memory leak) by cdegut » Mon, 2017-10-30 16:41 |
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3,899 |
by cdegut Fri, 2017-11-03 05:50 |
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Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress) by Danielsebas » Mon, 2019-09-23 03:24 |
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2,826 |
by smlewis Mon, 2019-09-23 11:42 |
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Rosetta residue design for DNA binding by deltag » Wed, 2012-12-12 11:35 |
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8,837 |
by deltag Mon, 2014-04-21 06:47 |
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Snugdock_input by luicui » Wed, 2017-01-18 16:48 |
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3,988 |
by smlewis Fri, 2017-01-20 08:14 |
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symmetrical membrane modeling by rlwoltz » Tue, 2013-10-29 03:41 |
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5,710 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Ligand Docking with Rosetta Scripts memory problem by Swillard » Thu, 2017-08-17 14:59 |
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4,452 |
by rmoretti Mon, 2018-11-12 14:31 |
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RosettaCM -weights, fragments and relax by jsv » Tue, 2017-05-09 10:20 |
5 |
4,602 |
by rmoretti Thu, 2017-06-01 08:52 |
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cyclization_type flag in simple_cycpep_predict by Florent Langenfeld » Thu, 2018-01-04 09:22 |
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4,197 |
by Florent Langenfeld Tue, 2018-03-27 11:44 |
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P-P docking with suitable constraint type by Yao Wu » Tue, 2012-11-13 18:03 |
5 |
6,650 |
by rmoretti Mon, 2014-04-21 06:47 |
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Cartesian-space refinement by sjyang7 » Wed, 2017-05-31 19:34 |
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5,165 |
by sjyang7 Sat, 2017-06-03 06:09 |
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RosettaLigand: How to score native pose in protein-ligand docking experiment? by Ryhon Wang » Tue, 2015-11-10 01:30 |
5 |
5,441 |
by Ryhon Wang Mon, 2016-01-04 19:59 |
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Rosetta ScriptsFeatures Reporter issue by David Weis » Sun, 2017-03-12 08:19 |
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4,355 |
by David Weis Mon, 2017-03-13 10:59 |
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Enzdes: increase weight of energy term for steric clashes with ligand by eyong123 » Wed, 2015-03-25 09:12 |
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5,712 |
by rmoretti Fri, 2015-04-24 12:02 |
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docking energies - deltadeltaG calculation by ast » Fri, 2013-07-19 07:30 |
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9,403 |
by rmoretti Mon, 2014-04-21 06:48 |
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RosettaScripts LinkResidues by Yero » Fri, 2019-05-17 05:26 |
5 |
3,748 |
by Yero Thu, 2019-07-18 01:39 |
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domain:domain fusion by felipet » Thu, 2017-06-15 13:13 |
5 |
4,981 |
by felipet Fri, 2017-06-16 11:42 |
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Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans? by ccottrell » Tue, 2020-05-05 20:30 |
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2,568 |
by jadolfbr Wed, 2020-05-06 11:37 |
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Parse error while reading in XML file in ROSETTA Scripts by rweisse » Fri, 2014-08-29 03:24 |
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8,945 |
by a-eatemadi@razi... Sun, 2017-08-06 03:49 |
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Rosetta dock irmsd by Pernille » Sun, 2015-04-26 13:51 |
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6,492 |
by rmoretti Mon, 2015-10-12 15:10 |
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snugdock(sequence position requested was greater than the number of residues in the pose) by lei » Thu, 2023-01-12 01:40 |
5 |
1,887 |
by lei Fri, 2023-01-20 08:11 |
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Using MoveMap within Relax Application? by m_grisewood » Mon, 2012-08-13 12:21 |
5 |
6,796 |
by m_grisewood Mon, 2014-04-21 06:47 |
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extract_pdb application parse error with silent file by staciekim » Tue, 2017-08-22 12:39 |
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5,223 |
by rmoretti Thu, 2017-08-24 08:19 |
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Local docking: "manually place the two proteins facing each other" ? by mdeklotz » Fri, 2018-07-20 10:24 |
5 |
4,031 |
by dfcoelho Tue, 2018-10-16 09:05 |
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conway2016 correction on beta-nov15? by attesor » Wed, 2017-03-15 05:26 |
5 |
4,039 |
by attesor Thu, 2017-03-16 01:21 |
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symmetric docking and constraints by ytao » Thu, 2013-05-02 12:08 |
5 |
7,343 |
by attesor Wed, 2015-10-21 13:53 |
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Does linker modeling exist? by aroop » Wed, 2012-02-22 07:34 |
5 |
5,049 |
by smlewis Mon, 2014-04-21 06:47 |
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extract silent error - tag mismatch by shrutikhare » Thu, 2014-04-03 00:13 |
5 |
6,638 |
by rmoretti Mon, 2014-04-21 10:47 |
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RosettaVIP: ERROR: seqpos <= size() by Anonymous » Thu, 2012-07-26 07:30 |
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6,199 |
by Anonymous Mon, 2014-04-21 06:47 |
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How to concatenate the 3-mer and 9-mer files for RosettaCM? by lanselibai » Fri, 2020-05-08 05:38 |
5 |
2,855 |
by danpf Tue, 2020-05-12 10:58 |
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Scoring functions: talaris2013 incompatible versions by Smbat » Tue, 2020-10-13 06:18 |
5 |
2,661 |
by Astghik Thu, 2020-10-15 00:48 |
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how to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:40 |
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4,560 |
by xinmiaohe Fri, 2019-10-04 08:54 |
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-score_app:linmin flag not working by fglaser » Tue, 2011-03-01 06:04 |
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5,150 |
by smlewis Mon, 2014-04-21 06:47 |
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Is there a way to restrict memory usage of ddg_monomer? by cossio » Fri, 2015-01-30 14:35 |
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4,848 |
by rmoretti Mon, 2015-02-09 12:04 |
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PDB format for RosettaDNA by brspurri » Thu, 2013-05-30 11:21 |
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6,132 |
by brspurri Mon, 2014-04-21 06:47 |
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ddg dG_separate by gw » Wed, 2012-08-22 11:25 |
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5,766 |
by smlewis Mon, 2014-04-21 06:47 |
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Steric clashes in RNA minimization by brianmlee » Tue, 2014-11-18 18:29 |
5 |
5,751 |
by brianmlee Mon, 2014-11-24 19:40 |
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