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Rosetta 3 - Applications
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blast database error by jessye » Sun, 2017-12-03 23:59 |
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1,953 |
by smlewis Mon, 2017-12-04 12:18 |
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Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:30 |
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1,295 |
by taylorjones Wed, 2021-06-09 16:38 |
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BridgeChains mover deletes residues at break by kmj » Thu, 2024-02-22 12:14 |
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262 |
by kmj Thu, 2024-02-22 12:14 |
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Broken structure of local docking of replicadock2 by Jun » Thu, 2023-12-28 00:26 |
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275 |
by Jun Thu, 2023-12-28 00:26 |
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broker domain insertion by dhirajks » Sun, 2018-05-06 12:55 |
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1,648 |
by rmoretti Fri, 2018-05-18 12:28 |
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Bug Report - Encoding issue by daniloboskovic » Tue, 2020-08-04 07:02 |
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773 |
by daniloboskovic Tue, 2020-08-04 07:02 |
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BUG REPORT: Remodel Resfile ERROR: LEU was added more than once? by daniloboskovic » Wed, 2020-04-29 01:17 |
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1,832 |
by daniloboskovic Wed, 2020-04-29 05:51 |
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building a protein-dna homology model via cm_rosetta by y_atsmonraz » Wed, 2021-10-20 23:11 |
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2,146 |
by y_atsmonraz Tue, 2021-11-02 01:47 |
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Building loop extensions in a membrane protein with Remodel by benhardy » Tue, 2020-06-02 08:21 |
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2,200 |
by benhardy Sun, 2020-09-20 11:15 |
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BuildPeptide - Using Phosphorylated and Sulfated Tyrosine by jlawrie » Thu, 2020-09-03 14:29 |
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1,434 |
by cryosky Mon, 2021-03-01 21:37 |
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C-termini remodelling of dimeric structure removes second chain by LeonhardJS » Wed, 2021-10-13 06:23 |
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1,103 |
by LeonhardJS Fri, 2021-11-12 01:20 |
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Calbur vs Energy Based Clustering by Swillard » Sun, 2018-07-01 13:24 |
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1,905 |
by rmoretti Fri, 2018-08-03 08:26 |
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Calculate_protein_protein_ddg by kamau » Fri, 2015-01-30 11:27 |
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3,068 |
by deepanshuiitb Thu, 2015-03-19 19:14 |
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Camelid antibody (VHH) modelling by Ayoub Ksouri » Tue, 2017-04-04 22:52 |
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10,756 |
by Ayoub Ksouri Wed, 2017-04-19 15:16 |
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Can anybody suggests some flags to run Rifdock? by Hyunmi Song » Sun, 2022-01-23 16:45 |
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1,298 |
by Hyunmi Song Sun, 2022-01-23 16:45 |
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can anyone help me correct this script to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:23 |
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1,741 |
by xinmiaohe Mon, 2019-08-26 18:16 |
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Can I assume the outputs from different runs are from a same batch? by lanselibai » Mon, 2014-11-03 06:34 |
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4,801 |
by lanselibai Mon, 2014-11-03 13:15 |
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Can I believe the antibody design result? by Sunyp_IM » Mon, 2020-11-30 03:29 |
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3,260 |
by jadolfbr Sun, 2020-12-06 17:41 |
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Can I change high-resolution filter in SymDock by attesor » Fri, 2015-10-23 07:35 |
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2,770 |
by attesor Mon, 2015-10-26 09:01 |
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Can I use rosetta binaries built in one linux system to another linux system? by Danielsebas » Wed, 2019-09-18 06:49 |
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1,514 |
by rmoretti Wed, 2019-09-18 10:36 |
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Can only relax one structure at a time by lah435 » Wed, 2012-12-12 01:55 |
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3,984 |
by smlewis Mon, 2014-04-21 06:47 |
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can remodel add loops in one chain in multichain PDB structure? by ksteczk » Fri, 2020-05-01 06:26 |
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1,482 |
by matteoferla Mon, 2020-05-04 01:43 |
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Can remodel really handle multiple insertions in one simulation? by lanselibai » Sat, 2019-12-28 12:51 |
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908 |
by lanselibai Sat, 2019-12-28 12:51 |
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Can rosetta generate a centroid model based on the rna sequence? by yels » Fri, 2021-03-26 04:06 |
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3,215 |
by yels Wed, 2021-03-31 18:31 |
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Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans? by ccottrell » Tue, 2020-05-05 20:30 |
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3,040 |
by jadolfbr Wed, 2020-05-06 11:37 |
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Can't append or prepend with pepspec by danzinho » Tue, 2015-03-31 01:19 |
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3,966 |
by dswhit Tue, 2015-04-21 10:14 |
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Can't find RosettaRemodel in Rosetta 3.4 by petrikigor » Mon, 2012-12-03 13:56 |
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1,792 |
by petrikigor Mon, 2014-04-21 06:47 |
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Can't generate a cst file to use with ddg_monomer application by ctqwong » Sat, 2021-03-13 03:53 |
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3,052 |
by ctqwong Thu, 2021-03-18 02:04 |
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Cannot get a negative score after relax by kxiao » Tue, 2014-01-28 22:28 |
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7,925 |
by rmoretti Mon, 2014-04-21 06:48 |
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Cannot install DAlphaBall by gerdos » Fri, 2023-10-13 07:55 |
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620 |
by Seongsung Fri, 2023-11-24 04:52 |
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Cartesian-space refinement by sjyang7 » Wed, 2017-05-31 19:34 |
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5,747 |
by sjyang7 Sat, 2017-06-03 06:09 |
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CartesianRefiner compilation problem by DmitriiN » Tue, 2015-12-15 08:52 |
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2,119 |
by rmoretti Tue, 2015-12-15 09:48 |
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cartesian_ddg crashes when the mutfile contains multiple mutations to non-canonical residues by ValentinaSora » Sun, 2020-05-24 12:32 |
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1,450 |
by ValentinaSora Sun, 2020-05-24 12:32 |
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cartesian_ddg error: "Assertion `files.size() == 1` failed." by cossio » Fri, 2018-05-11 09:59 |
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3,345 |
by cossio Fri, 2018-05-18 09:51 |
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cartesian_ddg output by cossio » Thu, 2018-10-11 14:58 |
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3,689 |
by cossio Fri, 2018-10-12 04:43 |
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cartfrag_overlap error while running hybridize protocol by sn » Thu, 2017-12-21 10:24 |
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2,290 |
by dnamkr Mon, 2019-12-30 11:43 |
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CC (or similar) calculation for cryoEM fitting by almeida85 » Tue, 2023-05-16 01:32 |
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721 |
by almeida85 Tue, 2023-05-23 08:23 |
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Centroid mode minimization by Martin Floor » Tue, 2020-01-21 07:34 |
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2,055 |
by Martin Floor Tue, 2020-01-21 11:15 |
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change number of output pose files written out (default=50) in ligand docking XML script by hdelrisco » Fri, 2019-10-18 13:50 |
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1,862 |
by hdelrisco Fri, 2019-10-18 17:16 |
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Changing rosetta scoring to favour less hydrophobic areas by daniloboskovic » Thu, 2020-05-21 03:03 |
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1,254 |
by vmulligan Thu, 2020-05-21 18:33 |
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Changing scoring function for fixbb protocol by mdyini » Sat, 2012-07-07 18:43 |
4 |
4,284 |
by mdyini Mon, 2014-04-21 06:47 |
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charge grid in rosetta ligand docking using rosetta script by syntekabio2019 » Mon, 2022-01-17 23:53 |
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1,020 |
by syntekabio2019 Mon, 2022-01-17 23:53 |
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Checkpoint with rosetta3.4 by AmelieH » Mon, 2014-12-01 15:51 |
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2,681 |
by rmoretti Wed, 2014-12-03 19:07 |
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Chemically bound ligand connection error by tsztain » Tue, 2019-01-01 18:40 |
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2,362 |
by tsztain Mon, 2019-02-18 09:55 |
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Choosing weight file for interface design? by johnnytam100 » Tue, 2019-05-07 00:47 |
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2,292 |
by johnnytam100 Tue, 2019-05-21 22:33 |
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clashes created with enzdes by listofdina » Mon, 2021-08-02 06:51 |
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795 |
by listofdina Mon, 2021-08-02 06:51 |
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clean_pdb not working by Andre Serobian » Thu, 2020-07-23 04:48 |
3 |
2,589 |
by rmoretti Tue, 2020-07-28 08:24 |
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clean_pdb.py of Rosetta VS cleanATOM of PyRosetta by lanselibai » Wed, 2014-09-24 03:02 |
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5,077 |
by lanselibai Wed, 2014-09-24 13:21 |
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cluster docked pdbs by kwu030 » Wed, 2023-06-14 22:48 |
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597 |
by rmoretti Wed, 2023-06-28 12:36 |
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cluster error by sudhar » Fri, 2011-06-17 05:58 |
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3,020 |
by rmoretti Mon, 2014-04-21 06:47 |
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cluster,how to get the statistic data by MajorID » Wed, 2011-06-08 09:20 |
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1,993 |
by MajorID Mon, 2014-04-21 06:47 |
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cluster.linuxgccrelease Killed error by samuelrpita » Fri, 2015-11-20 05:56 |
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2,428 |
by rmoretti Tue, 2015-11-24 16:07 |
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cluster.mpi running in MPI mode? by sacch » Fri, 2011-11-18 23:30 |
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4,485 |
by sacch Mon, 2014-04-21 06:47 |
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cluster.mpi.linuxgccrelease failed by fred » Mon, 2014-02-24 12:11 |
3 |
8,136 |
by fred Thu, 2014-03-27 11:29 |
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clustering by ays » Tue, 2014-09-30 08:26 |
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3,368 |
by rmoretti Mon, 2014-10-06 16:00 |
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clustering in RosettaRemodel by cheyuk » Wed, 2014-04-23 03:09 |
3 |
4,099 |
by rmoretti Mon, 2014-05-12 08:45 |
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Clustering issue by Loki01 » Thu, 2018-03-29 10:16 |
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3,447 |
by Loki01 Thu, 2018-04-12 08:28 |
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clustering output file has few structures by fabiotrovato » Mon, 2020-08-17 11:37 |
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790 |
by fabiotrovato Mon, 2020-08-17 11:37 |
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cm_scripts by sn » Wed, 2018-02-14 11:00 |
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1,749 |
by rmoretti Wed, 2018-02-21 15:21 |
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Coding denovo prediction from density maps in PyRosetta by ahmadkhalifa » Tue, 2018-04-10 11:43 |
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1,651 |
by rmoretti Tue, 2018-04-10 15:29 |
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Collecting all decoys from batch files by aep » Sun, 2016-08-07 12:23 |
2 |
2,553 |
by aep Sat, 2016-08-13 13:03 |
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Comparative modeling by MRH » Mon, 2013-08-19 23:08 |
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2,488 |
by smlewis Mon, 2014-04-21 06:48 |
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comparative modeling of a homodimer by banshee » Mon, 2017-01-09 18:34 |
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2,425 |
by rmoretti Wed, 2017-01-11 13:00 |
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Comparative modeling of metalloproteins by ctqwong » Sun, 2020-07-12 13:51 |
3 |
2,133 |
by ctqwong Mon, 2020-07-27 01:48 |
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comparative modeling of protein-ligand complex by tevang » Mon, 2013-09-09 09:06 |
3 |
4,423 |
by rmoretti Mon, 2014-04-21 06:48 |
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Comparative modeling stops with "no more batches to process... " / no output by eskici » Tue, 2012-08-28 12:13 |
6 |
6,398 |
by eskici Mon, 2014-04-21 06:47 |
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Comparative Modeling Templates for Protein with Multiple Domains by Morrian_Lynn » Wed, 2020-03-04 10:42 |
0 |
899 |
by Morrian_Lynn Wed, 2020-03-04 10:42 |
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Comparative Modeling Tutorial by code_Monkey » Thu, 2021-03-04 12:35 |
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1,068 |
by rmoretti Fri, 2021-03-05 09:35 |
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Comparative modeling using a two chained template for a one chain structure by ahmadkhalifa » Mon, 2017-12-18 11:00 |
1 |
1,643 |
by rmoretti Mon, 2018-01-15 16:14 |
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comparative modelling and broker by felipet » Tue, 2013-02-05 08:33 |
4 |
4,373 |
by smlewis Mon, 2014-04-21 06:47 |
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comparative modelling of a complex by sdh_h » Sun, 2017-12-17 06:07 |
0 |
1,101 |
by sdh_h Sun, 2017-12-17 06:07 |
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Comparing a prediction to the native structure and calculate RMSD for RNA by danwolf_33 » Thu, 2023-02-09 09:32 |
0 |
1,935 |
by danwolf_33 Thu, 2023-02-09 09:34 |
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Compiling Rosetta 3.3 on Linux Mint by proteinproteindock » Thu, 2011-09-01 16:05 |
2 |
3,761 |
by proteinproteindock Mon, 2014-04-21 06:47 |
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conformational sampling of multi domain protein by dhirajks » Tue, 2017-07-04 11:20 |
4 |
3,839 |
by jrporter Wed, 2017-07-05 06:30 |
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Conformers in EnzDes by JorickF » Fri, 2015-03-06 04:41 |
5 |
7,265 |
by rmoretti Tue, 2015-03-31 08:56 |
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Connecting linkers by Prasanth Kumar » Tue, 2014-05-06 00:53 |
1 |
3,227 |
by smlewis Mon, 2014-05-12 08:32 |
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connecting rna strands together by y_atsmonraz » Tue, 2021-11-09 05:42 |
1 |
1,021 |
by y_atsmonraz Thu, 2021-11-11 04:51 |
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constraining different chains together in rosetta_cm by y_atsmonraz » Thu, 2021-11-18 02:59 |
0 |
849 |
by y_atsmonraz Thu, 2021-11-18 03:01 |
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Constraint generator by Alison_Yajie » Wed, 2020-06-17 20:14 |
1 |
1,208 |
by Alison_Yajie Wed, 2020-06-17 20:35 |
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constraints in Rosetta ligand docking (AddorRemoveMatchCsts, Addconstraints Mover, and ConstraintSetMover) by rohi » Mon, 2021-01-11 13:32 |
0 |
1,035 |
by rohi Mon, 2021-01-11 13:58 |
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Constraints in RosettaCM by kbuhr » Fri, 2015-07-31 06:55 |
3 |
4,244 |
by kbuhr Mon, 2016-03-28 01:08 |
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contents of span file by tevang » Mon, 2013-04-15 05:01 |
1 |
2,568 |
by smlewis Mon, 2014-04-21 06:47 |
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Converting -patch replonly residues to original sequence by subha » Mon, 2017-06-26 13:39 |
8 |
6,265 |
by smlewis Tue, 2017-07-04 15:42 |
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conway2016 correction on beta-nov15? by attesor » Wed, 2017-03-15 05:26 |
5 |
4,524 |
by attesor Thu, 2017-03-16 01:21 |
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core.optimization.LineMinimizer: [ ERROR ] Inaccurate G! by aralz » Thu, 2021-02-11 00:46 |
0 |
976 |
by aralz Thu, 2021-02-11 00:46 |
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core.pose.util: (0) {0} [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard by ldx022 » Thu, 2023-03-16 04:13 |
0 |
1,156 |
by ldx022 Thu, 2023-03-16 04:13 |
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core.pose.util: [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard by AlfredoKCL » Sat, 2020-11-07 18:21 |
0 |
1,330 |
by AlfredoKCL Sat, 2020-11-07 18:21 |
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Could not open file /Rosetta/rosetta_bin_linux_2020.08.61146_bundle/main/database/citations/rosetta_citations by yliang20 » Wed, 2022-06-15 11:26 |
2 |
1,633 |
by yliang20 Wed, 2022-06-15 13:46 |
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Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex by benhardy » Mon, 2020-06-15 09:33 |
3 |
2,216 |
by benhardy Fri, 2020-06-19 07:55 |
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CoupledMoves not altering backbone coordinates? by amorin » Wed, 2021-01-20 11:38 |
15 |
6,903 |
by amorin Sat, 2021-02-27 20:29 |
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Coverage of sequence space? by johnnytam100 » Sun, 2019-04-21 23:25 |
4 |
3,688 |
by johnnytam100 Thu, 2019-04-25 19:28 |
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crazy loopmodel: linear output pdbs by fred » Wed, 2014-12-03 12:27 |
0 |
1,418 |
by fred Wed, 2014-12-03 12:28 |
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creating a model using a base pdb and extending a chain by rlwoltz » Fri, 2013-07-12 15:35 |
1 |
2,730 |
by nawsad Mon, 2014-04-21 06:48 |
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creating compound task mover by aaj » Wed, 2016-02-24 04:48 |
2 |
2,689 |
by aaj Wed, 2016-02-24 07:37 |
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Creating fragment files for proteins less than 27 aa in length by Poladu » Tue, 2021-01-26 07:50 |
0 |
875 |
by Poladu Tue, 2021-01-26 07:50 |
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Creating model of 89-90 residues by ab initio methodology-help by krlitros87 » Sun, 2014-05-25 12:12 |
1 |
2,290 |
by rmoretti Mon, 2014-05-26 09:29 |
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Creation of crystal_complex.pdb for docking by HBenson » Mon, 2024-03-11 08:57 |
0 |
148 |
by HBenson Mon, 2024-03-11 08:57 |
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cross correlation calculation by jingwei xu » Sat, 2016-04-16 19:11 |
2 |
2,792 |
by jingwei xu Wed, 2016-05-04 23:26 |
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cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else? by dantimatter » Wed, 2019-10-16 14:59 |
5 |
3,465 |
by dantimatter Wed, 2019-10-30 09:43 |
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cryptic error message from remodel in rosetta_scripts by petrikigor » Mon, 2012-12-03 15:13 |
9 |
8,819 |
by petrikigor Mon, 2014-04-21 06:47 |
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