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Rosetta 3 - Applications

Topic / Topic startersort descending Replies Views Last post
Normal topic Building loop extensions in a membrane protein with Remodel
by benhardy » Tue, 2020-06-02 08:21
2
1,253 by benhardy
Sun, 2020-09-20 11:15
Normal topic BuildPeptide - Using Phosphorylated and Sulfated Tyrosine
by jlawrie » Thu, 2020-09-03 14:29
1
773 by cryosky
Mon, 2021-03-01 21:37
Normal topic C-termini remodelling of dimeric structure removes second chain
by LeonhardJS » Wed, 2021-10-13 06:23
1
304 by LeonhardJS
Fri, 2021-11-12 01:20
Normal topic Calbur vs Energy Based Clustering
by Swillard » Sun, 2018-07-01 13:24
1
1,349 by rmoretti
Fri, 2018-08-03 08:26
Normal topic Calculate_protein_protein_ddg
by kamau » Fri, 2015-01-30 11:27
2
2,334 by deepanshuiitb
Thu, 2015-03-19 19:14
Normal topic Camelid antibody (VHH) modelling
by Ayoub Ksouri » Tue, 2017-04-04 22:52
13
7,756 by Ayoub Ksouri
Wed, 2017-04-19 15:16
Normal topic Can anybody suggests some flags to run Rifdock?
by Hyunmi Song » Sun, 2022-01-23 16:45
0
243 by Hyunmi Song
Sun, 2022-01-23 16:45
Normal topic can anyone help me correct this script to do alanine scanning
by xinmiaohe » Mon, 2019-08-26 17:23
1
1,053 by xinmiaohe
Mon, 2019-08-26 18:16
Normal topic Can I assume the outputs from different runs are from a same batch?
by lanselibai » Mon, 2014-11-03 06:34
4
3,638 by lanselibai
Mon, 2014-11-03 13:15
Normal topic Can I believe the antibody design result?
by Sunyp_IM » Mon, 2020-11-30 03:29
6
1,662 by jadolfbr
Sun, 2020-12-06 17:41
Normal topic Can I change high-resolution filter in SymDock
by attesor » Fri, 2015-10-23 07:35
2
2,058 by attesor
Mon, 2015-10-26 09:01
Normal topic Can I use rosetta binaries built in one linux system to another linux system?
by Danielsebas » Wed, 2019-09-18 06:49
1
879 by rmoretti
Wed, 2019-09-18 10:36
Normal topic Can only relax one structure at a time
by lah435 » Wed, 2012-12-12 01:55
3
3,192 by smlewis
Mon, 2014-04-21 06:47
Normal topic can remodel add loops in one chain in multichain PDB structure?
by ksteczk » Fri, 2020-05-01 06:26
1
785 by matteoferla
Mon, 2020-05-04 01:43
Normal topic Can remodel really handle multiple insertions in one simulation?
by lanselibai » Sat, 2019-12-28 12:51
0
523 by lanselibai
Sat, 2019-12-28 12:51
Normal topic Can rosetta generate a centroid model based on the rna sequence?
by yels » Fri, 2021-03-26 04:06
7
1,375 by yels
Wed, 2021-03-31 18:31
Normal topic Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans?
by ccottrell » Tue, 2020-05-05 20:30
5
1,665 by jadolfbr
Wed, 2020-05-06 11:37
Normal topic Can't append or prepend with pepspec
by danzinho » Tue, 2015-03-31 01:19
3
3,044 by dswhit
Tue, 2015-04-21 10:14
Normal topic Can't find RosettaRemodel in Rosetta 3.4
by petrikigor » Mon, 2012-12-03 13:56
0
1,460 by petrikigor
Mon, 2014-04-21 06:47
Normal topic Can't generate a cst file to use with ddg_monomer application
by ctqwong » Sat, 2021-03-13 03:53
6
1,353 by ctqwong
Thu, 2021-03-18 02:04
Normal topic Cannot get a negative score after relax
by kxiao » Tue, 2014-01-28 22:28
6
6,448 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Cartesian-space refinement
by sjyang7 » Wed, 2017-05-31 19:34
5
4,052 by sjyang7
Sat, 2017-06-03 06:09
Normal topic CartesianRefiner compilation problem
by DmitriiN » Tue, 2015-12-15 08:52
1
1,531 by rmoretti
Tue, 2015-12-15 09:48
Normal topic cartesian_ddg crashes when the mutfile contains multiple mutations to non-canonical residues
by ValentinaSora » Sun, 2020-05-24 12:32
0
661 by ValentinaSora
Sun, 2020-05-24 12:32
Normal topic cartesian_ddg error: "Assertion `files.size() == 1` failed."
by cossio » Fri, 2018-05-11 09:59
2
2,123 by cossio
Fri, 2018-05-18 09:51
Normal topic cartesian_ddg output
by cossio » Thu, 2018-10-11 14:58
2
2,125 by cossio
Fri, 2018-10-12 04:43
Normal topic cartfrag_overlap error while running hybridize protocol
by sn » Thu, 2017-12-21 10:24
2
1,528 by dnamkr
Mon, 2019-12-30 11:43
Normal topic Centroid mode minimization
by Martin Floor » Tue, 2020-01-21 07:34
2
1,146 by Martin Floor
Tue, 2020-01-21 11:15
Normal topic change number of output pose files written out (default=50) in ligand docking XML script
by hdelrisco » Fri, 2019-10-18 13:50
2
1,076 by hdelrisco
Fri, 2019-10-18 17:16
Normal topic Changing rosetta scoring to favour less hydrophobic areas
by daniloboskovic » Thu, 2020-05-21 03:03
1
661 by vmulligan
Thu, 2020-05-21 18:33
Normal topic Changing scoring function for fixbb protocol
by mdyini » Sat, 2012-07-07 18:43
4
3,329 by mdyini
Mon, 2014-04-21 06:47
Normal topic charge grid in rosetta ligand docking using rosetta script
by syntekabio2019 » Mon, 2022-01-17 23:53
0
195 by syntekabio2019
Mon, 2022-01-17 23:53
Normal topic Checkpoint with rosetta3.4
by AmelieH » Mon, 2014-12-01 15:51
1
2,007 by rmoretti
Wed, 2014-12-03 19:07
Normal topic Chemically bound ligand connection error
by tsztain » Tue, 2019-01-01 18:40
2
1,480 by tsztain
Mon, 2019-02-18 09:55
Normal topic Choosing weight file for interface design?
by johnnytam100 » Tue, 2019-05-07 00:47
2
1,376 by johnnytam100
Tue, 2019-05-21 22:33
Normal topic clashes created with enzdes
by listofdina » Mon, 2021-08-02 06:51
0
303 by listofdina
Mon, 2021-08-02 06:51
Normal topic clean_pdb not working
by Andre Serobian » Thu, 2020-07-23 04:48
3
1,326 by rmoretti
Tue, 2020-07-28 08:24
Normal topic clean_pdb.py of Rosetta VS cleanATOM of PyRosetta
by lanselibai » Wed, 2014-09-24 03:02
2
4,177 by lanselibai
Wed, 2014-09-24 13:21
Normal topic cluster error
by sudhar » Fri, 2011-06-17 05:58
1
2,383 by rmoretti
Mon, 2014-04-21 06:47
Normal topic cluster,how to get the statistic data
by MajorID » Wed, 2011-06-08 09:20
0
1,614 by MajorID
Mon, 2014-04-21 06:47
Normal topic cluster.linuxgccrelease Killed error
by samuelrpita » Fri, 2015-11-20 05:56
1
1,826 by rmoretti
Tue, 2015-11-24 16:07
Normal topic cluster.mpi running in MPI mode?
by sacch » Fri, 2011-11-18 23:30
2
3,696 by sacch
Mon, 2014-04-21 06:47
Normal topic cluster.mpi.linuxgccrelease failed
by fred » Mon, 2014-02-24 12:11
3
7,108 by fred
Thu, 2014-03-27 11:29
Normal topic clustering
by ays » Tue, 2014-09-30 08:26
2
2,608 by rmoretti
Mon, 2014-10-06 16:00
Normal topic clustering in RosettaRemodel
by cheyuk » Wed, 2014-04-23 03:09
3
3,245 by rmoretti
Mon, 2014-05-12 08:45
Normal topic Clustering issue
by Loki01 » Thu, 2018-03-29 10:16
4
2,295 by Loki01
Thu, 2018-04-12 08:28
Normal topic clustering output file has few structures
by fabiotrovato » Mon, 2020-08-17 11:37
0
415 by fabiotrovato
Mon, 2020-08-17 11:37
Normal topic cm_scripts
by sn » Wed, 2018-02-14 11:00
1
1,199 by rmoretti
Wed, 2018-02-21 15:21
Normal topic Coding denovo prediction from density maps in PyRosetta
by ahmadkhalifa » Tue, 2018-04-10 11:43
1
1,073 by rmoretti
Tue, 2018-04-10 15:29
Normal topic Collecting all decoys from batch files
by aep » Sun, 2016-08-07 12:23
2
1,885 by aep
Sat, 2016-08-13 13:03
Normal topic Comparative modeling
by MRH » Mon, 2013-08-19 23:08
1
2,023 by smlewis
Mon, 2014-04-21 06:48
Normal topic comparative modeling of a homodimer
by banshee » Mon, 2017-01-09 18:34
1
1,795 by rmoretti
Wed, 2017-01-11 13:00
Normal topic Comparative modeling of metalloproteins
by ctqwong » Sun, 2020-07-12 13:51
3
1,205 by ctqwong
Mon, 2020-07-27 01:48
Normal topic comparative modeling of protein-ligand complex
by tevang » Mon, 2013-09-09 09:06
3
3,550 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Comparative modeling stops with "no more batches to process... " / no output
by eskici » Tue, 2012-08-28 12:13
6
5,125 by eskici
Mon, 2014-04-21 06:47
Normal topic Comparative Modeling Templates for Protein with Multiple Domains
by Morrian_Lynn » Wed, 2020-03-04 10:42
0
529 by Morrian_Lynn
Wed, 2020-03-04 10:42
Normal topic Comparative Modeling Tutorial
by code_Monkey » Thu, 2021-03-04 12:35
1
501 by rmoretti
Fri, 2021-03-05 09:35
Normal topic Comparative modeling using a two chained template for a one chain structure
by ahmadkhalifa » Mon, 2017-12-18 11:00
1
1,086 by rmoretti
Mon, 2018-01-15 16:14
Normal topic comparative modelling and broker
by felipet » Tue, 2013-02-05 08:33
4
3,400 by smlewis
Mon, 2014-04-21 06:47
Normal topic comparative modelling of a complex
by sdh_h » Sun, 2017-12-17 06:07
0
741 by sdh_h
Sun, 2017-12-17 06:07
Normal topic Compiling Rosetta 3.3 on Linux Mint
by proteinproteindock » Thu, 2011-09-01 16:05
2
3,025 by proteinproteindock
Mon, 2014-04-21 06:47
Normal topic conformational sampling of multi domain protein
by dhirajks » Tue, 2017-07-04 11:20
4
2,688 by jrporter
Wed, 2017-07-05 06:30
Normal topic Conformers in EnzDes
by JorickF » Fri, 2015-03-06 04:41
5
5,921 by rmoretti
Tue, 2015-03-31 08:56
Normal topic Connecting linkers
by Prasanth Kumar » Tue, 2014-05-06 00:53
1
2,485 by smlewis
Mon, 2014-05-12 08:32
Normal topic connecting rna strands together
by y_atsmonraz » Tue, 2021-11-09 05:42
1
248 by y_atsmonraz
Thu, 2021-11-11 04:51
Normal topic constraining different chains together in rosetta_cm
by y_atsmonraz » Thu, 2021-11-18 02:59
0
249 by y_atsmonraz
Thu, 2021-11-18 03:01
Normal topic Constraint generator
by Alison_Yajie » Wed, 2020-06-17 20:14
1
680 by Alison_Yajie
Wed, 2020-06-17 20:35
Normal topic constraints in Rosetta ligand docking (AddorRemoveMatchCsts, Addconstraints Mover, and ConstraintSetMover)
by rohi » Mon, 2021-01-11 13:32
0
536 by rohi
Mon, 2021-01-11 13:58
Normal topic Constraints in RosettaCM
by kbuhr » Fri, 2015-07-31 06:55
3
3,301 by kbuhr
Mon, 2016-03-28 01:08
Normal topic contents of span file
by tevang » Mon, 2013-04-15 05:01
1
2,114 by smlewis
Mon, 2014-04-21 06:47
Normal topic Converting -patch replonly residues to original sequence
by subha » Mon, 2017-06-26 13:39
8
4,362 by smlewis
Tue, 2017-07-04 15:42
Normal topic conway2016 correction on beta-nov15?
by attesor » Wed, 2017-03-15 05:26
5
3,160 by attesor
Thu, 2017-03-16 01:21
Normal topic core.optimization.LineMinimizer: [ ERROR ] Inaccurate G!
by aralz » Thu, 2021-02-11 00:46
0
467 by aralz
Thu, 2021-02-11 00:46
Normal topic core.pose.util: [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard
by AlfredoKCL » Sat, 2020-11-07 18:21
0
643 by AlfredoKCL
Sat, 2020-11-07 18:21
Normal topic Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex
by benhardy » Mon, 2020-06-15 09:33
3
1,180 by benhardy
Fri, 2020-06-19 07:55
Hot topic CoupledMoves not altering backbone coordinates?
by amorin » Wed, 2021-01-20 11:38
15
3,184 by amorin
Sat, 2021-02-27 20:29
Normal topic Coverage of sequence space?
by johnnytam100 » Sun, 2019-04-21 23:25
4
2,320 by johnnytam100
Thu, 2019-04-25 19:28
Normal topic crazy loopmodel: linear output pdbs
by fred » Wed, 2014-12-03 12:27
0
1,052 by fred
Wed, 2014-12-03 12:28
Normal topic creating a model using a base pdb and extending a chain
by rlwoltz » Fri, 2013-07-12 15:35
1
2,222 by nawsad
Mon, 2014-04-21 06:48
Normal topic creating compound task mover
by aaj » Wed, 2016-02-24 04:48
2
1,941 by aaj
Wed, 2016-02-24 07:37
Normal topic Creating fragment files for proteins less than 27 aa in length
by Poladu » Tue, 2021-01-26 07:50
0
394 by Poladu
Tue, 2021-01-26 07:50
Normal topic Creating model of 89-90 residues by ab initio methodology-help
by krlitros87 » Sun, 2014-05-25 12:12
1
1,757 by rmoretti
Mon, 2014-05-26 09:29
Normal topic cross correlation calculation
by jingwei xu » Sat, 2016-04-16 19:11
2
2,044 by jingwei xu
Wed, 2016-05-04 23:26
Normal topic cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else?
by dantimatter » Wed, 2019-10-16 14:59
5
2,004 by dantimatter
Wed, 2019-10-30 09:43
Normal topic cryptic error message from remodel in rosetta_scripts
by petrikigor » Mon, 2012-12-03 15:13
9
6,823 by petrikigor
Mon, 2014-04-21 06:47
Normal topic CS-HM-Rosetta
by pwurm » Thu, 2013-03-07 12:56
6
5,641 by Marius1987
Fri, 2016-02-05 07:20
Normal topic CSrosetta run problem
by erin_cutts » Fri, 2013-06-28 09:52
2
3,075 by erin_cutts
Mon, 2014-04-21 06:48
Normal topic csrosetta.org login
by jfeuva » Tue, 2014-12-09 14:49
0
24,036 by jfeuva
Tue, 2014-12-09 14:49
Normal topic cyclization_type flag in simple_cycpep_predict
by Florent Langenfeld » Thu, 2018-01-04 09:22
5
2,993 by Florent Langenfeld
Tue, 2018-03-27 11:44
Normal topic D-amino acids tripeptide docking.
by sam_dc » Sat, 2021-07-03 08:48
2
549 by vmulligan
Tue, 2021-07-06 08:27
Normal topic DDG and interaction score problem
by a-eatemadi@razi... » Mon, 2018-04-09 22:54
0
796 by a-eatemadi@razi...
Mon, 2018-04-09 22:54
Hot topic ddG calculation
by malkeet.singh » Sun, 2017-06-25 07:53
32
17,548 by malkeet.singh
Tue, 2017-11-14 04:33
Normal topic ddG calculations to study point mutations
by N.Chopra » Fri, 2018-12-07 12:36
1
1,372 by jeliazkov
Fri, 2018-12-07 12:51
Normal topic ddg dG_separate
by gw » Wed, 2012-08-22 11:25
5
4,712 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddG filter gives deltaG calculation number?
by jarod » Tue, 2013-05-28 23:43
2
3,223 by jarod
Mon, 2014-04-21 06:47
Normal topic Ddg filter threshold value?
by chrisHKL » Fri, 2020-02-28 15:01
1
720 by rmoretti
Wed, 2020-03-04 09:56
Normal topic DDG monomer and backrub motions
by yperez » Thu, 2012-06-21 08:10
2
2,768 by yperez
Mon, 2014-04-21 06:47
Normal topic ddG Monomer Low Res Protocol Convergence
by harshkhare » Thu, 2012-03-01 00:45
2
3,162 by harshkhare
Mon, 2014-04-21 06:47
Normal topic ddg monomer vs pmut scan
by dave » Tue, 2014-03-04 10:18
3
3,579 by smlewis
Fri, 2014-03-07 13:02
Normal topic ddg with ligands
by bhaines1 » Mon, 2011-12-05 14:32
4
4,183 by rmoretti
Mon, 2014-04-21 06:47
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