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Rosetta 3 - Applications
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Syntax to build a silent file by lanselibai » Fri, 2014-09-26 09:13 |
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9,615 |
by lanselibai Tue, 2014-09-30 03:45 |
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Syntax for the alignment file in "minirosetta comparative modeling" by lanselibai » Thu, 2014-10-16 15:29 |
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4,443 |
by lanselibai Thu, 2014-10-23 03:26 |
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Syntax for relax.linuxgccrelease by lanselibai » Wed, 2014-09-24 04:34 |
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23,499 |
by lanselibai Tue, 2014-12-02 09:46 |
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Syntax for python-based (.py) command line on cluster by lanselibai » Fri, 2014-11-14 09:32 |
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5,042 |
by lanselibai Thu, 2014-11-20 02:15 |
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Symmetry-aware Backrub? by gamacy » Fri, 2014-11-14 02:18 |
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2,118 |
by rmoretti Tue, 2014-11-18 09:10 |
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Symmetry mode in Remodel for N-terminal extension by yvonne.chan2 » Mon, 2019-11-04 13:41 |
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1,170 |
by yvonne.chan2 Mon, 2019-11-04 13:41 |
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Symmetry Docking and Clustering with Ligands by skovacs » Wed, 2012-03-07 16:46 |
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11,375 |
by Anonymous Mon, 2014-04-21 06:47 |
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Symmetry definition question by mrconde96 » Sun, 2022-10-02 05:34 |
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1,254 |
by mrconde96 Sun, 2022-10-02 05:34 |
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Symmetry definition for coiled-coil dimer and trimer by kszczepaniak » Fri, 2013-10-11 05:33 |
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5,619 |
by kszczepaniak Mon, 2014-04-21 06:48 |
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Symmetry definition for apolar helix by vanrooyenjason » Tue, 2016-01-05 05:20 |
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3,096 |
by rmoretti Fri, 2016-04-29 09:21 |
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Symmetry definition file versions by Jeff Qu » Tue, 2021-09-28 09:53 |
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688 |
by Jeff Qu Tue, 2021-09-28 09:53 |
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symmetrical membrane modeling by rlwoltz » Tue, 2013-10-29 03:41 |
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5,883 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Symmetric Minimization by aroop » Mon, 2012-12-17 11:45 |
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4,515 |
by aroop Mon, 2014-04-21 06:47 |
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symmetric fixbb design with design_hpatch by sdh_h » Sat, 2013-02-02 01:48 |
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2,838 |
by ronj Mon, 2014-04-21 06:47 |
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Symmetric docking with multiple chains as asymmetric unit by sarah29 » Tue, 2013-11-05 20:24 |
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3,144 |
by rmoretti Mon, 2014-04-21 06:48 |
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symmetric docking and constraints by ytao » Thu, 2013-05-02 12:08 |
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7,484 |
by attesor Wed, 2015-10-21 13:53 |
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symmetric design in the presence of a nonsymmetric ligand by msardejani » Fri, 2016-09-30 15:17 |
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5,883 |
by msardejani Sat, 2016-10-01 12:55 |
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Symmetric assembly and output reconstruction by felipet » Wed, 2014-07-02 10:23 |
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1,411 |
by felipet Wed, 2014-07-02 10:23 |
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SymDock with constraints by felipet » Thu, 2015-05-14 09:01 |
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3,049 |
by rmoretti Mon, 2015-05-25 11:49 |
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SymDock for docking only the ligand? by ast » Mon, 2013-06-17 09:53 |
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5,223 |
by rmoretti Mon, 2014-04-21 06:48 |
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Surface Docking Crash (continued) by dkozuch » Tue, 2017-09-12 06:18 |
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1,594 |
by rmoretti Tue, 2017-10-10 10:08 |
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Surface Docking Application Crash by dkozuch » Sat, 2017-09-02 18:32 |
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8,279 |
by Anpu Tue, 2018-09-25 19:06 |
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Surface accessible residue as a constraint. by arthuc01 » Fri, 2012-03-09 23:27 |
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2,214 |
by smlewis Mon, 2014-04-21 06:47 |
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suppress pdb output from backrub by attesor » Mon, 2014-10-27 11:16 |
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6,841 |
by rmoretti Mon, 2014-11-03 15:47 |
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Successful RosettaCM? by jlawrie » Wed, 2020-08-19 06:53 |
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1,667 |
by jlawrie Thu, 2020-08-20 11:00 |
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submit_NGK.py not creating output files by nkato2 » Wed, 2013-08-28 23:37 |
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2,445 |
by rmoretti Mon, 2014-04-21 06:48 |
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Structure prediction using true distance and angle constraint by maruhuang » Wed, 2019-08-21 02:29 |
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2,396 |
by maruhuang Thu, 2019-09-26 18:52 |
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structure prediction by MA » Wed, 2018-09-05 00:50 |
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920 |
by MA Wed, 2018-09-05 00:50 |
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Structure determination combining X-ray diffraction data and NMR chemical shift by MajorID » Mon, 2011-10-17 19:55 |
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3,708 |
by rmoretti Mon, 2014-04-21 06:47 |
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Strong bias in sampling observed in RosettaDock by chenna » Thu, 2020-08-27 22:23 |
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1,705 |
by chenna Tue, 2021-10-12 20:51 |
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strange effect in: SymDock.linuxgccrelease by ast » Tue, 2013-06-11 11:05 |
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3,717 |
by ast Mon, 2014-04-21 06:48 |
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Steric clashes in RNA minimization by brianmlee » Tue, 2014-11-18 18:29 |
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5,924 |
by brianmlee Mon, 2014-11-24 19:40 |
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Stepwise Monte Carlo - errors with ResidueTypeSet and Disulfides by user42 » Wed, 2021-07-21 20:34 |
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925 |
by everyday847 Fri, 2021-07-30 13:26 |
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std::bad_alloc error after changing .xml script? by chrisHKL » Wed, 2020-03-04 11:44 |
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5,111 |
by jadolfbr Thu, 2020-03-05 07:02 |
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Standalone alanine scanning protocol by exchhattu » Thu, 2011-10-13 19:40 |
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5,365 |
by smlewis Mon, 2014-04-21 06:47 |
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St13runtime_error in Rosetta ligand docking by syntekabio2019 » Thu, 2023-02-09 18:18 |
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2,770 |
by syntekabio2019 Sun, 2023-02-19 18:39 |
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splitfile.py by saladi » Fri, 2018-03-30 10:31 |
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1,681 |
by rmoretti Tue, 2018-04-10 15:34 |
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SPLINE EPR_DISTANCE Constraint Error by mmw88 » Tue, 2018-09-18 14:39 |
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2,309 |
by rmoretti Thu, 2018-09-20 09:19 |
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Speed problem when running RosettaLigand ligand docking by Nicole Deng » Tue, 2019-10-08 04:29 |
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2,084 |
by Nicole Deng Tue, 2020-11-03 19:07 |
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Specifying resfile in rosetta scripts by johnnytam100 » Mon, 2019-03-18 02:19 |
4 |
3,654 |
by rmoretti Fri, 2019-03-29 09:30 |
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Space Swap!!! by jrcf » Sun, 2016-02-14 11:43 |
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2,568 |
by jrcf Mon, 2016-02-15 17:59 |
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Some wrong with the flag "-l" for score_jd2.linuxgccrelease by lanselibai » Mon, 2014-09-29 02:29 |
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4,215 |
by lanselibai Tue, 2014-09-30 02:28 |
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some application troubles when using resfile flag by chenchaozhao » Tue, 2011-04-05 00:05 |
24 |
25,819 |
by smlewis Mon, 2014-04-21 06:47 |
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Snugdock_input by luicui » Wed, 2017-01-18 16:48 |
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4,149 |
by smlewis Fri, 2017-01-20 08:14 |
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Snugdock_error by luicui » Thu, 2017-02-09 21:06 |
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1,676 |
by smlewis Thu, 2017-02-09 21:50 |
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SnugDocking a VHH:antigen complex possible? by David Weis » Thu, 2017-02-16 05:57 |
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5,779 |
by rmoretti Thu, 2017-07-06 13:00 |
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snugdock: constrained backbone by mahendra » Mon, 2022-11-14 02:51 |
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1,637 |
by mahendra Mon, 2022-11-14 02:51 |
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Snugdock+ensembledock usage by Anouk » Mon, 2014-09-22 08:09 |
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2,980 |
by jadolfbr Mon, 2014-10-20 13:42 |
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snugdock(sequence position requested was greater than the number of residues in the pose) by lei » Thu, 2023-01-12 01:40 |
5 |
2,144 |
by lei Fri, 2023-01-20 08:11 |
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snugdock run error: Sequence for partner1 does not match first member of ensemble1 by pagumaaaaa » Fri, 2022-03-25 01:21 |
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824 |
by pagumaaaaa Fri, 2022-03-25 01:21 |
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SnugDock Partners parameter by tyang39 » Fri, 2022-07-08 10:02 |
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876 |
by rmoretti Fri, 2022-07-08 10:27 |
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Snugdock Error: The sequence position requested was greater than the number of residues by stannowitz » Tue, 2023-01-17 07:37 |
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962 |
by stannowitz Tue, 2023-01-17 23:48 |
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SnugDock - What protocol should I use? by dfcoelho » Tue, 2018-11-27 07:32 |
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6,967 |
by dfcoelho Wed, 2018-11-28 08:07 |
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Small molecule dimer/trimer/etc docking by lukasz » Tue, 2022-10-04 06:49 |
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1,553 |
by rmoretti Tue, 2022-10-04 07:57 |
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small ligand docking in Ubuntu 20.04, please help by guowuchen » Sun, 2022-03-06 18:12 |
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1,336 |
by guowuchen Mon, 2022-03-07 23:34 |
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Single Strand DNA (ssDNA) 3D structure prediction by mkoohim » Fri, 2012-04-06 00:52 |
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14,337 |
by smlewis Mon, 2014-04-21 06:47 |
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simple_cycpep_predict with N-term acetylation by Ken » Fri, 2021-12-17 09:49 |
0 |
842 |
by Ken Fri, 2021-12-17 09:49 |
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Simple_cycpep_predict with crosslinker BBMB by Ken » Tue, 2023-05-09 08:52 |
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304 |
by Ken Tue, 2023-05-09 08:52 |
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simple_cycpep_predict thioether_lariat option by Ken » Mon, 2022-03-14 15:14 |
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720 |
by Ken Mon, 2022-03-14 15:14 |
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simple_cycpep_predict - Design mode - The base name "ARG" was added more than once by almeida85 » Thu, 2022-08-04 02:57 |
4 |
1,379 |
by almeida85 Thu, 2022-08-11 00:58 |
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Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB" by brspurri » Fri, 2017-03-24 10:52 |
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3,574 |
by brspurri Fri, 2017-03-24 11:35 |
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Silent File Scores Missing: RNA Protein Complex Predition by axio23 » Fri, 2023-06-16 05:45 |
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242 |
by axio23 Fri, 2023-06-16 05:45 |
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Side-chain grafting at the fixed protein and position by Kazu » Wed, 2020-05-20 08:49 |
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741 |
by Kazu Wed, 2020-05-20 08:49 |
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side chain repacking error by malkeet.singh » Thu, 2017-12-07 04:49 |
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3,795 |
by smlewis Wed, 2017-12-13 09:54 |
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Should I trust the score output from relax used with a protein complex? by cossio » Thu, 2015-05-07 06:08 |
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2,102 |
by rmoretti Mon, 2015-05-25 12:37 |
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Should I be stripping water molecules from my input structure for Rosetta Design? by chrisHKL » Wed, 2021-03-24 14:22 |
1 |
1,009 |
by smlewis Wed, 2021-03-24 14:59 |
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Should FastRelax be commented out in Calculate_protein_protein_ddg demo? by cossio » Mon, 2016-10-31 12:01 |
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9,055 |
by cossio Mon, 2016-11-21 07:56 |
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shape complementarity by holdenj » Fri, 2022-07-15 13:24 |
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909 |
by rmoretti Fri, 2022-07-15 13:50 |
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SEWING and motif file generation by rbjacob » Thu, 2018-07-12 07:28 |
10 |
6,433 |
by zhangying1990 Tue, 2019-06-04 18:04 |
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setup_RosettaCM.py by browns02 » Mon, 2021-06-28 07:13 |
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1,200 |
by browns02 Tue, 2021-06-29 11:41 |
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Setting pivots points for GenKIC by almeida85 » Tue, 2022-10-25 02:32 |
0 |
1,561 |
by almeida85 Tue, 2022-10-25 02:32 |
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Sequence design with mixed fixbb-relax protocol by kszczepaniak » Thu, 2013-10-03 08:11 |
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5,410 |
by fede Wed, 2020-09-23 11:24 |
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sequence design to enhance Fc / Fc-g Receptor binding by jarod » Tue, 2017-05-23 09:00 |
1 |
1,666 |
by jadolfbr Thu, 2017-06-01 10:00 |
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select_best_unique_ligand_poses output by ast » Thu, 2013-07-11 02:33 |
2 |
3,207 |
by ast Mon, 2014-04-21 06:48 |
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select_best_unique_ligand_poses - Ligand docking by subha » Thu, 2018-04-19 10:36 |
4 |
3,139 |
by subha Fri, 2018-04-20 12:49 |
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Segmentation fault when running Abinito Relax by Hongtham » Mon, 2014-12-15 07:16 |
1 |
3,068 |
by rmoretti Fri, 2015-01-02 11:45 |
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Segmentation Fault in Rosetta CM Hybridize by yliang20 » Mon, 2022-06-06 17:25 |
2 |
1,233 |
by yliang20 Tue, 2022-06-07 08:36 |
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Segmentation Fault in Fragment picking by ashu4487 » Fri, 2018-07-06 20:47 |
2 |
3,102 |
by ashu4487 Mon, 2018-07-16 19:24 |
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Segmentation Fault during prepacking by Sunyp_IM » Fri, 2020-06-12 11:24 |
4 |
3,012 |
by Sunyp_IM Thu, 2020-07-09 18:40 |
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segmentation fault after core.kinematics.FoldTree in homology modeling by pdbb » Mon, 2012-10-08 14:27 |
7 |
7,311 |
by rmoretti Mon, 2014-04-21 06:47 |
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Segmentation fault (core dumped) in rosetta_scripts.default.linuxgccrelease after blueprint file reading by Corvin » Tue, 2020-06-30 00:36 |
12 |
8,132 |
by Corvin Tue, 2020-11-10 01:22 |
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Segmentation Fault by ajaniharesh » Fri, 2019-03-29 11:21 |
4 |
5,789 |
by ajaniharesh Thu, 2019-04-04 07:07 |
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Segment File Gen - no ouput by CATarr » Wed, 2019-10-09 19:05 |
0 |
852 |
by CATarr Wed, 2019-10-09 19:05 |
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Segfault with Pepspec by almeida85 » Thu, 2021-02-11 02:56 |
0 |
618 |
by almeida85 Thu, 2021-02-11 02:56 |
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Segfault error while running MR Rosetta in Phenix by memilton » Thu, 2021-12-16 09:09 |
0 |
910 |
by memilton Thu, 2021-12-16 09:09 |
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SecundaryStructure Filter by Soler » Sun, 2021-11-21 22:20 |
0 |
762 |
by Soler Sun, 2021-11-21 22:20 |
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Secondary Matching build_sets Error by enmirts » Wed, 2018-03-28 10:33 |
0 |
1,060 |
by enmirts Wed, 2018-03-28 10:34 |
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Script for loop modeling: how to define loop sequence by batch2k » Thu, 2014-10-30 12:58 |
1 |
2,166 |
by jadolfbr Fri, 2014-10-31 08:45 |
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Scoring residue vs. organic ligand by almeida » Tue, 2014-04-08 12:18 |
12 |
13,332 |
by rmoretti Thu, 2014-04-24 14:43 |
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scoring of beta sandwich protein by attesor » Mon, 2014-11-17 08:24 |
6 |
5,802 |
by rmoretti Thu, 2014-11-20 10:46 |
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scoring input pdbs as the same as docking score by hamedkhakzad » Fri, 2016-07-01 07:15 |
3 |
3,515 |
by rmoretti Tue, 2016-07-12 09:05 |
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Scoring functions: talaris2013 incompatible versions by Smbat » Tue, 2020-10-13 06:18 |
5 |
2,835 |
by Astghik Thu, 2020-10-15 00:48 |
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Scoring docking error by almeida85 » Wed, 2020-09-02 01:32 |
2 |
1,533 |
by almeida85 Wed, 2020-09-02 06:14 |
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Scoring after HBNet by HHL_SIUC » Wed, 2020-07-01 10:49 |
0 |
779 |
by HHL_SIUC Wed, 2020-07-01 10:49 |
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score_jd2.mpi.linuxgccrelease failed by fred » Wed, 2014-03-26 13:54 |
2 |
5,276 |
by fred Tue, 2014-04-01 08:24 |
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score_jd2.linuxgccrelease documentation by fglaser » Mon, 2011-08-01 04:08 |
1 |
3,889 |
by smlewis Mon, 2014-04-21 06:47 |
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score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059' by sn » Fri, 2017-03-24 12:26 |
1 |
1,771 |
by rmoretti Fri, 2017-03-24 13:39 |
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score:weights for fixbb application in Rosetta 3.5 by tylerborrman » Tue, 2015-07-28 14:16 |
2 |
2,701 |
by tylerborrman Wed, 2015-09-23 10:51 |
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Score.sc file showing total score 0 for all protein structures created by aanshi » Wed, 2022-11-23 11:13 |
1 |
3,272 |
by nannemdp Mon, 2022-11-28 09:39 |
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score to use for picking top docking solutions? by sudhar » Tue, 2011-06-14 06:47 |
3 |
5,705 |
by weitzner Mon, 2014-04-21 06:47 |
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