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Rosetta 3 - Applications
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Symmetry definition for apolar helix by vanrooyenjason » Tue, 2016-01-05 05:20 |
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2,616 |
by rmoretti Fri, 2016-04-29 09:21 |
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Symmetry definition file versions by Jeff Qu » Tue, 2021-09-28 09:53 |
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248 |
by Jeff Qu Tue, 2021-09-28 09:53 |
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symmetrical membrane modeling by rlwoltz » Tue, 2013-10-29 03:41 |
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4,979 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Symmetric Minimization by aroop » Mon, 2012-12-17 11:45 |
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3,691 |
by aroop Mon, 2014-04-21 06:47 |
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symmetric fixbb design with design_hpatch by sdh_h » Sat, 2013-02-02 01:48 |
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2,348 |
by ronj Mon, 2014-04-21 06:47 |
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Symmetric docking with multiple chains as asymmetric unit by sarah29 » Tue, 2013-11-05 20:24 |
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2,746 |
by rmoretti Mon, 2014-04-21 06:48 |
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symmetric docking and constraints by ytao » Thu, 2013-05-02 12:08 |
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6,492 |
by attesor Wed, 2015-10-21 13:53 |
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symmetric design in the presence of a nonsymmetric ligand by msardejani » Fri, 2016-09-30 15:17 |
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4,755 |
by msardejani Sat, 2016-10-01 12:55 |
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Symmetric assembly and output reconstruction by felipet » Wed, 2014-07-02 10:23 |
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1,091 |
by felipet Wed, 2014-07-02 10:23 |
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SymDock with constraints by felipet » Thu, 2015-05-14 09:01 |
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2,571 |
by rmoretti Mon, 2015-05-25 11:49 |
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SymDock for docking only the ligand? by ast » Mon, 2013-06-17 09:53 |
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4,484 |
by rmoretti Mon, 2014-04-21 06:48 |
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Surface Docking Crash (continued) by dkozuch » Tue, 2017-09-12 06:18 |
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1,191 |
by rmoretti Tue, 2017-10-10 10:08 |
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Surface Docking Application Crash by dkozuch » Sat, 2017-09-02 18:32 |
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6,292 |
by Anpu Tue, 2018-09-25 19:06 |
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Surface accessible residue as a constraint. by arthuc01 » Fri, 2012-03-09 23:27 |
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1,826 |
by smlewis Mon, 2014-04-21 06:47 |
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suppress pdb output from backrub by attesor » Mon, 2014-10-27 11:16 |
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5,512 |
by rmoretti Mon, 2014-11-03 15:47 |
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Successful RosettaCM? by jlawrie » Wed, 2020-08-19 06:53 |
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957 |
by jlawrie Thu, 2020-08-20 11:00 |
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submit_NGK.py not creating output files by nkato2 » Wed, 2013-08-28 23:37 |
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2,119 |
by rmoretti Mon, 2014-04-21 06:48 |
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Structure prediction using true distance and angle constraint by maruhuang » Wed, 2019-08-21 02:29 |
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1,589 |
by maruhuang Thu, 2019-09-26 18:52 |
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structure prediction by MA » Wed, 2018-09-05 00:50 |
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654 |
by MA Wed, 2018-09-05 00:50 |
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Structure determination combining X-ray diffraction data and NMR chemical shift by MajorID » Mon, 2011-10-17 19:55 |
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3,160 |
by rmoretti Mon, 2014-04-21 06:47 |
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Strong bias in sampling observed in RosettaDock by chenna » Thu, 2020-08-27 22:23 |
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910 |
by chenna Tue, 2021-10-12 20:51 |
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strange effect in: SymDock.linuxgccrelease by ast » Tue, 2013-06-11 11:05 |
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3,144 |
by ast Mon, 2014-04-21 06:48 |
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Steric clashes in RNA minimization by brianmlee » Tue, 2014-11-18 18:29 |
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4,893 |
by brianmlee Mon, 2014-11-24 19:40 |
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Stepwise Monte Carlo - errors with ResidueTypeSet and Disulfides by user42 » Wed, 2021-07-21 20:34 |
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440 |
by everyday847 Fri, 2021-07-30 13:26 |
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std::bad_alloc error after changing .xml script? by chrisHKL » Wed, 2020-03-04 11:44 |
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3,344 |
by jadolfbr Thu, 2020-03-05 07:02 |
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Standalone alanine scanning protocol by exchhattu » Thu, 2011-10-13 19:40 |
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4,854 |
by smlewis Mon, 2014-04-21 06:47 |
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splitfile.py by saladi » Fri, 2018-03-30 10:31 |
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1,262 |
by rmoretti Tue, 2018-04-10 15:34 |
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SPLINE EPR_DISTANCE Constraint Error by mmw88 » Tue, 2018-09-18 14:39 |
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1,720 |
by rmoretti Thu, 2018-09-20 09:19 |
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Speed problem when running RosettaLigand ligand docking by Nicole Deng » Tue, 2019-10-08 04:29 |
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1,484 |
by Nicole Deng Tue, 2020-11-03 19:07 |
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Specifying resfile in rosetta scripts by johnnytam100 » Mon, 2019-03-18 02:19 |
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2,513 |
by rmoretti Fri, 2019-03-29 09:30 |
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Space Swap!!! by jrcf » Sun, 2016-02-14 11:43 |
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2,008 |
by jrcf Mon, 2016-02-15 17:59 |
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Some wrong with the flag "-l" for score_jd2.linuxgccrelease by lanselibai » Mon, 2014-09-29 02:29 |
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3,707 |
by lanselibai Tue, 2014-09-30 02:28 |
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some application troubles when using resfile flag by chenchaozhao » Tue, 2011-04-05 00:05 |
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21,707 |
by smlewis Mon, 2014-04-21 06:47 |
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Snugdock_input by luicui » Wed, 2017-01-18 16:48 |
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3,215 |
by smlewis Fri, 2017-01-20 08:14 |
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Snugdock_error by luicui » Thu, 2017-02-09 21:06 |
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1,277 |
by smlewis Thu, 2017-02-09 21:50 |
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SnugDocking a VHH:antigen complex possible? by David Weis » Thu, 2017-02-16 05:57 |
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4,538 |
by rmoretti Thu, 2017-07-06 13:00 |
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Snugdock+ensembledock usage by Anouk » Mon, 2014-09-22 08:09 |
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2,425 |
by jadolfbr Mon, 2014-10-20 13:42 |
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snugdock run error: Sequence for partner1 does not match first member of ensemble1 by pagumaaaaa » Fri, 2022-03-25 01:21 |
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106 |
by pagumaaaaa Fri, 2022-03-25 01:21 |
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SnugDock - What protocol should I use? by dfcoelho » Tue, 2018-11-27 07:32 |
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4,769 |
by dfcoelho Wed, 2018-11-28 08:07 |
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small ligand docking in Ubuntu 20.04, please help by guowuchen » Sun, 2022-03-06 18:12 |
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312 |
by guowuchen Mon, 2022-03-07 23:34 |
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Single Strand DNA (ssDNA) 3D structure prediction by mkoohim » Fri, 2012-04-06 00:52 |
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12,740 |
by smlewis Mon, 2014-04-21 06:47 |
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simple_cycpep_predict with N-term acetylation by Ken » Fri, 2021-12-17 09:49 |
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193 |
by Ken Fri, 2021-12-17 09:49 |
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simple_cycpep_predict thioether_lariat option by Ken » Mon, 2022-03-14 15:14 |
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144 |
by Ken Mon, 2022-03-14 15:14 |
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Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB" by brspurri » Fri, 2017-03-24 10:52 |
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2,852 |
by brspurri Fri, 2017-03-24 11:35 |
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Side-chain grafting at the fixed protein and position by Kazu » Wed, 2020-05-20 08:49 |
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456 |
by Kazu Wed, 2020-05-20 08:49 |
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side chain repacking error by malkeet.singh » Thu, 2017-12-07 04:49 |
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2,804 |
by smlewis Wed, 2017-12-13 09:54 |
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Should I trust the score output from relax used with a protein complex? by cossio » Thu, 2015-05-07 06:08 |
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1,678 |
by rmoretti Mon, 2015-05-25 12:37 |
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Should I be stripping water molecules from my input structure for Rosetta Design? by chrisHKL » Wed, 2021-03-24 14:22 |
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551 |
by smlewis Wed, 2021-03-24 14:59 |
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Should FastRelax be commented out in Calculate_protein_protein_ddg demo? by cossio » Mon, 2016-10-31 12:01 |
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7,240 |
by cossio Mon, 2016-11-21 07:56 |
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SEWING and motif file generation by rbjacob » Thu, 2018-07-12 07:28 |
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4,543 |
by zhangying1990 Tue, 2019-06-04 18:04 |
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setup_RosettaCM.py by browns02 » Mon, 2021-06-28 07:13 |
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538 |
by browns02 Tue, 2021-06-29 11:41 |
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Sequence design with mixed fixbb-relax protocol by kszczepaniak » Thu, 2013-10-03 08:11 |
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4,611 |
by fede Wed, 2020-09-23 11:24 |
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sequence design to enhance Fc / Fc-g Receptor binding by jarod » Tue, 2017-05-23 09:00 |
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1,275 |
by jadolfbr Thu, 2017-06-01 10:00 |
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select_best_unique_ligand_poses output by ast » Thu, 2013-07-11 02:33 |
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2,735 |
by ast Mon, 2014-04-21 06:48 |
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select_best_unique_ligand_poses - Ligand docking by subha » Thu, 2018-04-19 10:36 |
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2,307 |
by subha Fri, 2018-04-20 12:49 |
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Segmentation fault when running Abinito Relax by Hongtham » Mon, 2014-12-15 07:16 |
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2,624 |
by rmoretti Fri, 2015-01-02 11:45 |
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Segmentation Fault in Rosetta CM Hybridize by yliang20 » Mon, 2022-06-06 17:25 |
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102 |
by yliang20 Tue, 2022-06-07 08:36 |
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Segmentation Fault in Fragment picking by ashu4487 » Fri, 2018-07-06 20:47 |
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2,445 |
by ashu4487 Mon, 2018-07-16 19:24 |
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Segmentation Fault during prepacking by Sunyp_IM » Fri, 2020-06-12 11:24 |
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1,877 |
by Sunyp_IM Thu, 2020-07-09 18:40 |
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segmentation fault after core.kinematics.FoldTree in homology modeling by pdbb » Mon, 2012-10-08 14:27 |
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6,272 |
by rmoretti Mon, 2014-04-21 06:47 |
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Segmentation fault (core dumped) in rosetta_scripts.default.linuxgccrelease after blueprint file reading by Corvin » Tue, 2020-06-30 00:36 |
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4,899 |
by Corvin Tue, 2020-11-10 01:22 |
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Segmentation Fault by ajaniharesh » Fri, 2019-03-29 11:21 |
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4,008 |
by ajaniharesh Thu, 2019-04-04 07:07 |
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Segment File Gen - no ouput by CATarr » Wed, 2019-10-09 19:05 |
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577 |
by CATarr Wed, 2019-10-09 19:05 |
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Segfault with Pepspec by almeida85 » Thu, 2021-02-11 02:56 |
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359 |
by almeida85 Thu, 2021-02-11 02:56 |
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Segfault error while running MR Rosetta in Phenix by memilton » Thu, 2021-12-16 09:09 |
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232 |
by memilton Thu, 2021-12-16 09:09 |
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SecundaryStructure Filter by Soler » Sun, 2021-11-21 22:20 |
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271 |
by Soler Sun, 2021-11-21 22:20 |
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Secondary Matching build_sets Error by enmirts » Wed, 2018-03-28 10:33 |
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771 |
by enmirts Wed, 2018-03-28 10:34 |
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Script for loop modeling: how to define loop sequence by batch2k » Thu, 2014-10-30 12:58 |
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1,751 |
by jadolfbr Fri, 2014-10-31 08:45 |
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Scoring residue vs. organic ligand by almeida » Tue, 2014-04-08 12:18 |
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11,349 |
by rmoretti Thu, 2014-04-24 14:43 |
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scoring of beta sandwich protein by attesor » Mon, 2014-11-17 08:24 |
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4,721 |
by rmoretti Thu, 2014-11-20 10:46 |
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scoring input pdbs as the same as docking score by hamedkhakzad » Fri, 2016-07-01 07:15 |
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2,846 |
by rmoretti Tue, 2016-07-12 09:05 |
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Scoring functions: talaris2013 incompatible versions by Smbat » Tue, 2020-10-13 06:18 |
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1,735 |
by Astghik Thu, 2020-10-15 00:48 |
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Scoring docking error by almeida85 » Wed, 2020-09-02 01:32 |
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988 |
by almeida85 Wed, 2020-09-02 06:14 |
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Scoring after HBNet by HHL_SIUC » Wed, 2020-07-01 10:49 |
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483 |
by HHL_SIUC Wed, 2020-07-01 10:49 |
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score_jd2.mpi.linuxgccrelease failed by fred » Wed, 2014-03-26 13:54 |
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4,443 |
by fred Tue, 2014-04-01 08:24 |
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score_jd2.linuxgccrelease documentation by fglaser » Mon, 2011-08-01 04:08 |
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3,313 |
by smlewis Mon, 2014-04-21 06:47 |
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score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059' by sn » Fri, 2017-03-24 12:26 |
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1,364 |
by rmoretti Fri, 2017-03-24 13:39 |
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score:weights for fixbb application in Rosetta 3.5 by tylerborrman » Tue, 2015-07-28 14:16 |
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2,171 |
by tylerborrman Wed, 2015-09-23 10:51 |
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score to use for picking top docking solutions? by sudhar » Tue, 2011-06-14 06:47 |
3 |
4,828 |
by weitzner Mon, 2014-04-21 06:47 |
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score is 0 in the output? - RosettaScripts by chrisHKL » Thu, 2020-03-05 09:33 |
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560 |
by chrisHKL Thu, 2020-03-05 12:58 |
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Score Functions for Ligand-protein Docking by ziruiw » Sun, 2021-04-25 13:41 |
4 |
1,314 |
by ziruiw Fri, 2021-04-30 12:01 |
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score application by Hongtham » Tue, 2014-12-23 06:38 |
1 |
1,532 |
by rmoretti Fri, 2015-01-02 11:06 |
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score and relax by Prasanth Kumar » Thu, 2013-05-02 05:09 |
1 |
2,835 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Score - Strange message by Ashafix » Wed, 2013-11-20 15:23 |
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2,932 |
by Ashafix Mon, 2014-04-21 06:48 |
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Sampling a wider range of RMSD of poses by Rosetta Dock by johnnytam100 » Tue, 2019-05-21 22:28 |
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1,024 |
by johnnytam100 Thu, 2019-05-23 20:52 |
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sam.predict-2nd for make_fragments.pl script by sumukh21 » Thu, 2011-02-17 12:29 |
3 |
3,980 |
by fukamitka Mon, 2014-04-21 06:47 |
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r_frag_quality by ii_cnr » Mon, 2021-04-12 03:06 |
2 |
643 |
by ii_cnr Mon, 2021-04-12 23:44 |
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running structure prediction with robetta server like automation by dhirajks » Mon, 2018-01-29 21:32 |
1 |
1,579 |
by rmoretti Tue, 2018-01-30 07:51 |
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Running snugdock was crashed by "segmentation fault" by Sunyp_IM » Mon, 2017-08-21 05:03 |
3 |
2,096 |
by rmoretti Tue, 2017-08-22 09:03 |
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Running RosettaHoles2 by weehee » Wed, 2013-02-13 09:35 |
3 |
2,942 |
by weehee Mon, 2014-04-21 06:47 |
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Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring by brspurri » Wed, 2017-03-29 13:19 |
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4,227 |
by matteoferla Mon, 2021-07-19 06:13 |
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running in MPI mode and multiple scores per output PDB file? by dantimatter » Wed, 2019-10-30 09:42 |
7 |
3,284 |
by dantimatter Wed, 2019-11-06 09:51 |
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Runnig Abinitio & score app by Gaurav_kumar » Wed, 2011-11-23 20:45 |
9 |
9,863 |
by rmoretti Mon, 2014-04-21 06:47 |
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Run AbinitioRelax (rosetta 3.3) on cluster by grisha » Mon, 2011-12-12 14:20 |
18 |
14,544 |
by grisha Mon, 2014-04-21 06:47 |
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Rotamers used in fixbb by lanselibai » Thu, 2014-11-06 02:47 |
6 |
4,801 |
by lanselibai Tue, 2014-11-11 15:28 |
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rotamer library in coupled_moves by mtyras » Fri, 2015-05-29 07:46 |
2 |
2,997 |
by mtyras Mon, 2015-06-08 03:18 |
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Rosetta_scripts error, Got some signal... It is:6 by jhm13c » Fri, 2017-04-14 14:05 |
1 |
1,565 |
by rmoretti Sat, 2017-04-15 13:30 |
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Rosetta_cm Segmentation Fault by gszwabowski » Thu, 2019-06-20 12:55 |
2 |
1,715 |
by gszwabowski Wed, 2019-06-26 10:25 |
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rosetta_cm segfault by browns02 » Fri, 2021-07-09 13:35 |
2 |
568 |
by rmoretti Fri, 2021-07-09 15:05 |
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Rosetta_cm Partial Threading Removing Parts of Sequence by gszwabowski » Thu, 2019-06-20 12:30 |
1 |
1,095 |
by rmoretti Mon, 2019-06-24 13:43 |
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