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Rosetta 3 - Applications

Topic / Topic startersort ascending Replies Views Last post
Normal topic Symmetry definition for apolar helix
by vanrooyenjason » Tue, 2016-01-05 05:20
1
2,616 by rmoretti
Fri, 2016-04-29 09:21
Normal topic Symmetry definition file versions
by Jeff Qu » Tue, 2021-09-28 09:53
0
248 by Jeff Qu
Tue, 2021-09-28 09:53
Normal topic symmetrical membrane modeling
by rlwoltz » Tue, 2013-10-29 03:41
5
4,979 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Symmetric Minimization
by aroop » Mon, 2012-12-17 11:45
5
3,691 by aroop
Mon, 2014-04-21 06:47
Normal topic symmetric fixbb design with design_hpatch
by sdh_h » Sat, 2013-02-02 01:48
2
2,348 by ronj
Mon, 2014-04-21 06:47
Normal topic Symmetric docking with multiple chains as asymmetric unit
by sarah29 » Tue, 2013-11-05 20:24
1
2,746 by rmoretti
Mon, 2014-04-21 06:48
Normal topic symmetric docking and constraints
by ytao » Thu, 2013-05-02 12:08
5
6,492 by attesor
Wed, 2015-10-21 13:53
Normal topic symmetric design in the presence of a nonsymmetric ligand
by msardejani » Fri, 2016-09-30 15:17
6
4,755 by msardejani
Sat, 2016-10-01 12:55
Normal topic Symmetric assembly and output reconstruction
by felipet » Wed, 2014-07-02 10:23
0
1,091 by felipet
Wed, 2014-07-02 10:23
Normal topic SymDock with constraints
by felipet » Thu, 2015-05-14 09:01
1
2,571 by rmoretti
Mon, 2015-05-25 11:49
Normal topic SymDock for docking only the ligand?
by ast » Mon, 2013-06-17 09:53
4
4,484 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Surface Docking Crash (continued)
by dkozuch » Tue, 2017-09-12 06:18
1
1,191 by rmoretti
Tue, 2017-10-10 10:08
Normal topic Surface Docking Application Crash
by dkozuch » Sat, 2017-09-02 18:32
12
6,292 by Anpu
Tue, 2018-09-25 19:06
Normal topic Surface accessible residue as a constraint.
by arthuc01 » Fri, 2012-03-09 23:27
1
1,826 by smlewis
Mon, 2014-04-21 06:47
Normal topic suppress pdb output from backrub
by attesor » Mon, 2014-10-27 11:16
7
5,512 by rmoretti
Mon, 2014-11-03 15:47
Normal topic Successful RosettaCM?
by jlawrie » Wed, 2020-08-19 06:53
2
957 by jlawrie
Thu, 2020-08-20 11:00
Normal topic submit_NGK.py not creating output files
by nkato2 » Wed, 2013-08-28 23:37
1
2,119 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Structure prediction using true distance and angle constraint
by maruhuang » Wed, 2019-08-21 02:29
4
1,589 by maruhuang
Thu, 2019-09-26 18:52
Normal topic structure prediction
by MA » Wed, 2018-09-05 00:50
0
654 by MA
Wed, 2018-09-05 00:50
Normal topic Structure determination combining X-ray diffraction data and NMR chemical shift
by MajorID » Mon, 2011-10-17 19:55
2
3,160 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Strong bias in sampling observed in RosettaDock
by chenna » Thu, 2020-08-27 22:23
2
910 by chenna
Tue, 2021-10-12 20:51
Normal topic strange effect in: SymDock.linuxgccrelease
by ast » Tue, 2013-06-11 11:05
3
3,144 by ast
Mon, 2014-04-21 06:48
Normal topic Steric clashes in RNA minimization
by brianmlee » Tue, 2014-11-18 18:29
5
4,893 by brianmlee
Mon, 2014-11-24 19:40
Normal topic Stepwise Monte Carlo - errors with ResidueTypeSet and Disulfides
by user42 » Wed, 2021-07-21 20:34
1
440 by everyday847
Fri, 2021-07-30 13:26
Normal topic std::bad_alloc error after changing .xml script?
by chrisHKL » Wed, 2020-03-04 11:44
10
3,344 by jadolfbr
Thu, 2020-03-05 07:02
Normal topic Standalone alanine scanning protocol
by exchhattu » Thu, 2011-10-13 19:40
1
4,854 by smlewis
Mon, 2014-04-21 06:47
Normal topic splitfile.py
by saladi » Fri, 2018-03-30 10:31
1
1,262 by rmoretti
Tue, 2018-04-10 15:34
Normal topic SPLINE EPR_DISTANCE Constraint Error
by mmw88 » Tue, 2018-09-18 14:39
2
1,720 by rmoretti
Thu, 2018-09-20 09:19
Normal topic Speed problem when running RosettaLigand ligand docking
by Nicole Deng » Tue, 2019-10-08 04:29
2
1,484 by Nicole Deng
Tue, 2020-11-03 19:07
Normal topic Specifying resfile in rosetta scripts
by johnnytam100 » Mon, 2019-03-18 02:19
4
2,513 by rmoretti
Fri, 2019-03-29 09:30
Normal topic Space Swap!!!
by jrcf » Sun, 2016-02-14 11:43
2
2,008 by jrcf
Mon, 2016-02-15 17:59
Normal topic Some wrong with the flag "-l" for score_jd2.linuxgccrelease
by lanselibai » Mon, 2014-09-29 02:29
2
3,707 by lanselibai
Tue, 2014-09-30 02:28
Hot topic some application troubles when using resfile flag
by chenchaozhao » Tue, 2011-04-05 00:05
24
21,707 by smlewis
Mon, 2014-04-21 06:47
Normal topic Snugdock_input
by luicui » Wed, 2017-01-18 16:48
5
3,215 by smlewis
Fri, 2017-01-20 08:14
Normal topic Snugdock_error
by luicui » Thu, 2017-02-09 21:06
1
1,277 by smlewis
Thu, 2017-02-09 21:50
Normal topic SnugDocking a VHH:antigen complex possible?
by David Weis » Thu, 2017-02-16 05:57
7
4,538 by rmoretti
Thu, 2017-07-06 13:00
Normal topic Snugdock+ensembledock usage
by Anouk » Mon, 2014-09-22 08:09
1
2,425 by jadolfbr
Mon, 2014-10-20 13:42
Normal topic snugdock run error: Sequence for partner1 does not match first member of ensemble1
by pagumaaaaa » Fri, 2022-03-25 01:21
0
106 by pagumaaaaa
Fri, 2022-03-25 01:21
Normal topic SnugDock - What protocol should I use?
by dfcoelho » Tue, 2018-11-27 07:32
8
4,769 by dfcoelho
Wed, 2018-11-28 08:07
Normal topic small ligand docking in Ubuntu 20.04, please help
by guowuchen » Sun, 2022-03-06 18:12
2
312 by guowuchen
Mon, 2022-03-07 23:34
Normal topic Single Strand DNA (ssDNA) 3D structure prediction
by mkoohim » Fri, 2012-04-06 00:52
4
12,740 by smlewis
Mon, 2014-04-21 06:47
Normal topic simple_cycpep_predict with N-term acetylation
by Ken » Fri, 2021-12-17 09:49
0
193 by Ken
Fri, 2021-12-17 09:49
Normal topic simple_cycpep_predict thioether_lariat option
by Ken » Mon, 2022-03-14 15:14
0
144 by Ken
Mon, 2022-03-14 15:14
Normal topic Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB"
by brspurri » Fri, 2017-03-24 10:52
3
2,852 by brspurri
Fri, 2017-03-24 11:35
Normal topic Side-chain grafting at the fixed protein and position
by Kazu » Wed, 2020-05-20 08:49
0
456 by Kazu
Wed, 2020-05-20 08:49
Normal topic side chain repacking error
by malkeet.singh » Thu, 2017-12-07 04:49
4
2,804 by smlewis
Wed, 2017-12-13 09:54
Normal topic Should I trust the score output from relax used with a protein complex?
by cossio » Thu, 2015-05-07 06:08
1
1,678 by rmoretti
Mon, 2015-05-25 12:37
Normal topic Should I be stripping water molecules from my input structure for Rosetta Design?
by chrisHKL » Wed, 2021-03-24 14:22
1
551 by smlewis
Wed, 2021-03-24 14:59
Normal topic Should FastRelax be commented out in Calculate_protein_protein_ddg demo?
by cossio » Mon, 2016-10-31 12:01
11
7,240 by cossio
Mon, 2016-11-21 07:56
Normal topic SEWING and motif file generation
by rbjacob » Thu, 2018-07-12 07:28
10
4,543 by zhangying1990
Tue, 2019-06-04 18:04
Normal topic setup_RosettaCM.py
by browns02 » Mon, 2021-06-28 07:13
2
538 by browns02
Tue, 2021-06-29 11:41
Normal topic Sequence design with mixed fixbb-relax protocol
by kszczepaniak » Thu, 2013-10-03 08:11
4
4,611 by fede
Wed, 2020-09-23 11:24
Normal topic sequence design to enhance Fc / Fc-g Receptor binding
by jarod » Tue, 2017-05-23 09:00
1
1,275 by jadolfbr
Thu, 2017-06-01 10:00
Normal topic select_best_unique_ligand_poses output
by ast » Thu, 2013-07-11 02:33
2
2,735 by ast
Mon, 2014-04-21 06:48
Normal topic select_best_unique_ligand_poses - Ligand docking
by subha » Thu, 2018-04-19 10:36
4
2,307 by subha
Fri, 2018-04-20 12:49
Normal topic Segmentation fault when running Abinito Relax
by Hongtham » Mon, 2014-12-15 07:16
1
2,624 by rmoretti
Fri, 2015-01-02 11:45
Normal topic Segmentation Fault in Rosetta CM Hybridize
by yliang20 » Mon, 2022-06-06 17:25
2
102 by yliang20
Tue, 2022-06-07 08:36
Normal topic Segmentation Fault in Fragment picking
by ashu4487 » Fri, 2018-07-06 20:47
2
2,445 by ashu4487
Mon, 2018-07-16 19:24
Normal topic Segmentation Fault during prepacking
by Sunyp_IM » Fri, 2020-06-12 11:24
4
1,877 by Sunyp_IM
Thu, 2020-07-09 18:40
Normal topic segmentation fault after core.kinematics.FoldTree in homology modeling
by pdbb » Mon, 2012-10-08 14:27
7
6,272 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Segmentation fault (core dumped) in rosetta_scripts.default.linuxgccrelease after blueprint file reading
by Corvin » Tue, 2020-06-30 00:36
12
4,899 by Corvin
Tue, 2020-11-10 01:22
Normal topic Segmentation Fault
by ajaniharesh » Fri, 2019-03-29 11:21
4
4,008 by ajaniharesh
Thu, 2019-04-04 07:07
Normal topic Segment File Gen - no ouput
by CATarr » Wed, 2019-10-09 19:05
0
577 by CATarr
Wed, 2019-10-09 19:05
Normal topic Segfault with Pepspec
by almeida85 » Thu, 2021-02-11 02:56
0
359 by almeida85
Thu, 2021-02-11 02:56
Normal topic Segfault error while running MR Rosetta in Phenix
by memilton » Thu, 2021-12-16 09:09
0
232 by memilton
Thu, 2021-12-16 09:09
Normal topic SecundaryStructure Filter
by Soler » Sun, 2021-11-21 22:20
0
271 by Soler
Sun, 2021-11-21 22:20
Normal topic Secondary Matching build_sets Error
by enmirts » Wed, 2018-03-28 10:33
0
771 by enmirts
Wed, 2018-03-28 10:34
Normal topic Script for loop modeling: how to define loop sequence
by batch2k » Thu, 2014-10-30 12:58
1
1,751 by jadolfbr
Fri, 2014-10-31 08:45
Normal topic Scoring residue vs. organic ligand
by almeida » Tue, 2014-04-08 12:18
12
11,349 by rmoretti
Thu, 2014-04-24 14:43
Normal topic scoring of beta sandwich protein
by attesor » Mon, 2014-11-17 08:24
6
4,721 by rmoretti
Thu, 2014-11-20 10:46
Normal topic scoring input pdbs as the same as docking score
by hamedkhakzad » Fri, 2016-07-01 07:15
3
2,846 by rmoretti
Tue, 2016-07-12 09:05
Normal topic Scoring functions: talaris2013 incompatible versions
by Smbat » Tue, 2020-10-13 06:18
5
1,735 by Astghik
Thu, 2020-10-15 00:48
Normal topic Scoring docking error
by almeida85 » Wed, 2020-09-02 01:32
2
988 by almeida85
Wed, 2020-09-02 06:14
Normal topic Scoring after HBNet
by HHL_SIUC » Wed, 2020-07-01 10:49
0
483 by HHL_SIUC
Wed, 2020-07-01 10:49
Normal topic score_jd2.mpi.linuxgccrelease failed
by fred » Wed, 2014-03-26 13:54
2
4,443 by fred
Tue, 2014-04-01 08:24
Normal topic score_jd2.linuxgccrelease documentation
by fglaser » Mon, 2011-08-01 04:08
1
3,313 by smlewis
Mon, 2014-04-21 06:47
Normal topic score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059'
by sn » Fri, 2017-03-24 12:26
1
1,364 by rmoretti
Fri, 2017-03-24 13:39
Normal topic score:weights for fixbb application in Rosetta 3.5
by tylerborrman » Tue, 2015-07-28 14:16
2
2,171 by tylerborrman
Wed, 2015-09-23 10:51
Normal topic score to use for picking top docking solutions?
by sudhar » Tue, 2011-06-14 06:47
3
4,828 by weitzner
Mon, 2014-04-21 06:47
Normal topic score is 0 in the output? - RosettaScripts
by chrisHKL » Thu, 2020-03-05 09:33
0
560 by chrisHKL
Thu, 2020-03-05 12:58
Normal topic Score Functions for Ligand-protein Docking
by ziruiw » Sun, 2021-04-25 13:41
4
1,314 by ziruiw
Fri, 2021-04-30 12:01
Normal topic score application
by Hongtham » Tue, 2014-12-23 06:38
1
1,532 by rmoretti
Fri, 2015-01-02 11:06
Normal topic score and relax
by Prasanth Kumar » Thu, 2013-05-02 05:09
1
2,835 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Score - Strange message
by Ashafix » Wed, 2013-11-20 15:23
2
2,932 by Ashafix
Mon, 2014-04-21 06:48
Normal topic Sampling a wider range of RMSD of poses by Rosetta Dock
by johnnytam100 » Tue, 2019-05-21 22:28
1
1,024 by johnnytam100
Thu, 2019-05-23 20:52
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Thu, 2011-02-17 12:29
3
3,980 by fukamitka
Mon, 2014-04-21 06:47
Normal topic r_frag_quality
by ii_cnr » Mon, 2021-04-12 03:06
2
643 by ii_cnr
Mon, 2021-04-12 23:44
Normal topic running structure prediction with robetta server like automation
by dhirajks » Mon, 2018-01-29 21:32
1
1,579 by rmoretti
Tue, 2018-01-30 07:51
Normal topic Running snugdock was crashed by "segmentation fault"
by Sunyp_IM » Mon, 2017-08-21 05:03
3
2,096 by rmoretti
Tue, 2017-08-22 09:03
Normal topic Running RosettaHoles2
by weehee » Wed, 2013-02-13 09:35
3
2,942 by weehee
Mon, 2014-04-21 06:47
Normal topic Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring
by brspurri » Wed, 2017-03-29 13:19
7
4,227 by matteoferla
Mon, 2021-07-19 06:13
Normal topic running in MPI mode and multiple scores per output PDB file?
by dantimatter » Wed, 2019-10-30 09:42
7
3,284 by dantimatter
Wed, 2019-11-06 09:51
Normal topic Runnig Abinitio & score app
by Gaurav_kumar » Wed, 2011-11-23 20:45
9
9,863 by rmoretti
Mon, 2014-04-21 06:47
Hot topic Run AbinitioRelax (rosetta 3.3) on cluster
by grisha » Mon, 2011-12-12 14:20
18
14,544 by grisha
Mon, 2014-04-21 06:47
Normal topic Rotamers used in fixbb
by lanselibai » Thu, 2014-11-06 02:47
6
4,801 by lanselibai
Tue, 2014-11-11 15:28
Normal topic rotamer library in coupled_moves
by mtyras » Fri, 2015-05-29 07:46
2
2,997 by mtyras
Mon, 2015-06-08 03:18
Normal topic Rosetta_scripts error, Got some signal... It is:6
by jhm13c » Fri, 2017-04-14 14:05
1
1,565 by rmoretti
Sat, 2017-04-15 13:30
Normal topic Rosetta_cm Segmentation Fault
by gszwabowski » Thu, 2019-06-20 12:55
2
1,715 by gszwabowski
Wed, 2019-06-26 10:25
Normal topic rosetta_cm segfault
by browns02 » Fri, 2021-07-09 13:35
2
568 by rmoretti
Fri, 2021-07-09 15:05
Normal topic Rosetta_cm Partial Threading Removing Parts of Sequence
by gszwabowski » Thu, 2019-06-20 12:30
1
1,095 by rmoretti
Mon, 2019-06-24 13:43
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