You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
| Topic / Topic starter | Replies |
Views |
Last post | |
|---|---|---|---|---|
|
snugdock run error: Sequence for partner1 does not match first member of ensemble1 by pagumaaaaa » Fri, 2022-03-25 01:21 |
0 |
822 |
by pagumaaaaa Fri, 2022-03-25 01:21 |
|
|
protein relax by Alison_Yajie » Tue, 2020-05-19 08:29 |
0 |
825 |
by Alison_Yajie Tue, 2020-05-19 08:29 |
|
|
Error reading in/out glycosylated silent file - "Can't create a polymer bond after residue due to incompatible type" by amorin » Mon, 2021-09-27 12:16 |
0 |
831 |
by amorin Mon, 2021-09-27 12:16 |
|
|
Grafting using antibody.mpi.linuxgccrelease and specifying custom template which doesnt have pdb id. by SubhaK » Wed, 2023-01-18 23:33 |
0 |
831 |
by SubhaK Wed, 2023-01-18 23:33 |
|
|
Flex_ddG突变设计 by wangtao » Thu, 2022-05-05 02:46 |
0 |
834 |
by wangtao Thu, 2022-05-05 02:46 |
|
|
How to apply cartesian_ddg to multi-metric enzyme? by Wang Zhe » Wed, 2021-12-08 10:07 |
0 |
838 |
by Wang Zhe Wed, 2021-12-08 10:07 |
|
|
simple_cycpep_predict with N-term acetylation by Ken » Fri, 2021-12-17 09:49 |
0 |
839 |
by Ken Fri, 2021-12-17 09:49 |
|
|
Error with RoseTTAFold by sc19 » Thu, 2022-07-14 03:40 |
0 |
839 |
by sc19 Thu, 2022-07-14 03:40 |
|
|
hpatch commands and how to identify patches by Bianca Oliva » Thu, 2021-04-29 04:02 |
0 |
839 |
by Bianca Oliva Thu, 2021-04-29 04:02 |
|
|
RosettaAntibody - No matching templates for CDR1 by agctomer » Tue, 2021-01-19 22:45 |
0 |
839 |
by agctomer Tue, 2021-01-19 22:45 |
|
|
FlexPepDocking by jlawrie » Tue, 2020-09-15 12:52 |
0 |
841 |
by jlawrie Tue, 2020-09-15 12:52 |
|
|
Protein design: Ligand binding between two units of a homodimer by chemotaxis_123 » Sun, 2022-01-02 16:01 |
0 |
841 |
by chemotaxis_123 Sun, 2022-01-02 16:01 |
|
|
ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-07-02 07:05 |
0 |
841 |
by Alison_Yajie Thu, 2020-07-02 07:10 |
|
|
minimize_ppi.mpi.linuxgccrelease doesn't use jd2? by e3lm » Tue, 2022-05-17 11:58 |
0 |
845 |
by e3lm Tue, 2022-05-17 11:58 |
|
|
Expected density by GabrielDucrocq » Thu, 2022-07-14 06:38 |
1 |
850 |
by matteoferla Wed, 2022-07-20 10:50 |
|
|
Segment File Gen - no ouput by CATarr » Wed, 2019-10-09 19:05 |
0 |
852 |
by CATarr Wed, 2019-10-09 19:05 |
|
|
Remodel's problem in treatment with non-protein residues by Corvin » Mon, 2021-12-13 09:07 |
0 |
856 |
by Corvin Mon, 2021-12-13 09:07 |
|
|
Rosetta Matcher not recognizing protonation forms of CST files like CYZ, HIS_D, etc by Hirbond » Tue, 2022-03-01 13:16 |
0 |
859 |
by Hirbond Tue, 2022-03-01 13:16 |
|
|
Limit on backbone movement in relax? by SWM » Fri, 2020-01-24 07:35 |
0 |
861 |
by SWM Fri, 2020-01-24 07:35 |
|
|
AbinitioRelax detect_disulf_tolerance by aarono » Tue, 2020-06-02 00:13 |
0 |
861 |
by aarono Tue, 2020-06-02 00:13 |
|
|
about “protein mimic designer” by sia » Wed, 2022-04-27 19:59 |
0 |
868 |
by sia Wed, 2022-04-27 19:59 |
|
|
core.optimization.LineMinimizer: [ ERROR ] Inaccurate G! by aralz » Thu, 2021-02-11 00:46 |
0 |
868 |
by aralz Thu, 2021-02-11 00:46 |
|
|
SnugDock Partners parameter by tyang39 » Fri, 2022-07-08 10:02 |
1 |
875 |
by rmoretti Fri, 2022-07-08 10:27 |
|
|
ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-05-21 09:42 |
0 |
879 |
by Alison_Yajie Thu, 2020-05-21 09:42 |
|
|
Global Docking with carbohydrates by ChiauShu » Sat, 2020-08-22 20:16 |
0 |
879 |
by ChiauShu Sat, 2020-08-22 20:16 |
|
|
connecting rna strands together by y_atsmonraz » Tue, 2021-11-09 05:42 |
1 |
885 |
by y_atsmonraz Thu, 2021-11-11 04:51 |
|
|
charge grid in rosetta ligand docking using rosetta script by syntekabio2019 » Mon, 2022-01-17 23:53 |
0 |
891 |
by syntekabio2019 Mon, 2022-01-17 23:53 |
|
|
score is 0 in the output? - RosettaScripts by chrisHKL » Thu, 2020-03-05 09:33 |
0 |
899 |
by chrisHKL Thu, 2020-03-05 12:58 |
|
|
I need help with cst file the paper: De Novo Computational Design of Retro-Aldol Enzymes by Wenithor » Thu, 2022-01-06 12:20 |
0 |
899 |
by Wenithor Thu, 2022-01-06 12:20 |
|
|
Use membrane or non-membrane weights in RosettaCM for a hexon in virus capsid? by lanselibai » Sat, 2020-04-11 02:10 |
0 |
903 |
by lanselibai Sat, 2020-04-11 02:10 |
|
|
RNP structure prediction flags by daniloboskovic » Fri, 2019-08-16 11:10 |
0 |
904 |
by daniloboskovic Fri, 2019-08-16 11:17 |
|
|
shape complementarity by holdenj » Fri, 2022-07-15 13:24 |
1 |
906 |
by rmoretti Fri, 2022-07-15 13:50 |
|
|
Segfault error while running MR Rosetta in Phenix by memilton » Thu, 2021-12-16 09:09 |
0 |
908 |
by memilton Thu, 2021-12-16 09:09 |
|
|
using DARC in rosetta by syntekabio2019 » Thu, 2019-12-12 01:27 |
0 |
909 |
by syntekabio2019 Thu, 2019-12-12 01:27 |
|
|
FastRelaxMover parameters for antibody-antigen interaction analysis by samuel_k » Thu, 2022-01-27 01:08 |
0 |
910 |
by samuel_k Thu, 2022-01-27 01:08 |
|
|
Modelling of multi-component symmetrical structures by LanMei » Wed, 2020-10-07 09:58 |
0 |
910 |
by LanMei Wed, 2020-10-07 09:58 |
|
|
new BUNS for FunFolDes run by tatsiana.bylund » Wed, 2019-08-14 20:57 |
0 |
912 |
by tatsiana.bylund Wed, 2019-08-14 20:57 |
|
|
What is interface_cutoff_distance? And why did my residues outside this value get designed? by chrisHKL » Fri, 2020-02-28 14:52 |
0 |
913 |
by chrisHKL Fri, 2020-02-28 14:52 |
|
|
Docking the border segments of coiled coils in parallel orientation by Corvin » Mon, 2019-12-02 02:00 |
0 |
914 |
by Corvin Mon, 2019-12-02 02:00 |
|
|
Rosetta remodel - including an RNA ligand by daniloboskovic » Fri, 2020-04-10 04:24 |
0 |
914 |
by daniloboskovic Fri, 2020-04-10 04:24 |
|
|
application for affinity optimization by wentlewi » Fri, 2020-03-13 03:24 |
0 |
917 |
by wentlewi Fri, 2020-03-13 03:24 |
|
|
structure prediction by MA » Wed, 2018-09-05 00:50 |
0 |
920 |
by MA Wed, 2018-09-05 00:50 |
|
|
What means "[ ERROR ] TIME_STAMP: AbrelaxMover: finished ...NO_BATCH S_0001." by Corvin » Thu, 2020-04-02 00:16 |
0 |
921 |
by Corvin Thu, 2020-04-02 00:16 |
|
|
Stepwise Monte Carlo - errors with ResidueTypeSet and Disulfides by user42 » Wed, 2021-07-21 20:34 |
1 |
924 |
by everyday847 Fri, 2021-07-30 13:26 |
|
|
help surface_docking peptide on ice by engand93 » Wed, 2019-03-27 02:43 |
0 |
927 |
by engand93 Wed, 2019-03-27 02:43 |
|
|
Weighted scores?? by sizhang » Wed, 2018-12-05 15:22 |
0 |
930 |
by sizhang Wed, 2018-12-05 15:22 |
|
|
Help with enzyme design files by Wenithor » Thu, 2021-04-29 10:33 |
1 |
933 |
by rmoretti Thu, 2021-04-29 10:44 |
|
|
Relax in membrane pull my protein out of the membrane by Martin Floor » Wed, 2022-01-26 07:46 |
0 |
933 |
by Martin Floor Wed, 2022-01-26 07:46 |
|
|
Error Implementing Match Style Constraints by pwging13 » Thu, 2019-12-19 09:53 |
0 |
934 |
by pwging13 Thu, 2019-12-19 09:53 |
|
|
RosettaAntibody3 core.pose.util error by linhhoang157 » Tue, 2020-07-28 12:40 |
0 |
936 |
by linhhoang157 Tue, 2020-07-28 12:40 |
|
|
ligand dock into HEM containg pdb by syntekabio2019 » Thu, 2022-01-20 03:05 |
0 |
936 |
by syntekabio2019 Thu, 2022-01-20 03:05 |
|
|
duplex RNA by amir_tagh » Thu, 2021-08-05 06:34 |
1 |
937 |
by everyday847 Mon, 2021-08-16 10:43 |
|
|
constraints in Rosetta ligand docking (AddorRemoveMatchCsts, Addconstraints Mover, and ConstraintSetMover) by rohi » Mon, 2021-01-11 13:32 |
0 |
940 |
by rohi Mon, 2021-01-11 13:58 |
|
|
Comparative Modeling Tutorial by code_Monkey » Thu, 2021-03-04 12:35 |
1 |
948 |
by rmoretti Fri, 2021-03-05 09:35 |
|
|
EMERALD method not working, Rosetta version not available for download by seba » Thu, 2023-05-04 08:14 |
6 |
949 |
by rmoretti Mon, 2023-07-10 08:57 |
|
|
extract docking pose from ligand docking silent file by Ruska322 » Sat, 2019-09-07 05:21 |
0 |
952 |
by Ruska322 Sat, 2019-09-07 05:21 |
|
|
Old Knotfind algorithm by Martin Floor » Thu, 2022-09-22 07:28 |
1 |
953 |
by rmoretti Fri, 2022-09-23 09:38 |
|
|
Extracting top score PIPER models by almeida85 » Mon, 2020-08-31 07:17 |
0 |
956 |
by almeida85 Mon, 2020-08-31 07:17 |
|
|
RosettaCM/hybridize by kywei » Wed, 2021-04-28 09:56 |
1 |
957 |
by vmulligan Wed, 2021-04-28 12:59 |
|
|
Pepspec Anchor Dock by Soler » Fri, 2020-09-18 08:09 |
0 |
957 |
by Soler Fri, 2020-09-18 08:09 |
|
|
Snugdock Error: The sequence position requested was greater than the number of residues by stannowitz » Tue, 2023-01-17 07:37 |
0 |
960 |
by stannowitz Tue, 2023-01-17 23:48 |
|
|
C-termini remodelling of dimeric structure removes second chain by LeonhardJS » Wed, 2021-10-13 06:23 |
1 |
976 |
by LeonhardJS Fri, 2021-11-12 01:20 |
|
|
Zero residues error in docking by cjy318 » Tue, 2020-07-28 19:47 |
0 |
977 |
by cjy318 Tue, 2020-07-28 19:47 |
|
|
Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)? by Corvin » Wed, 2020-12-16 04:58 |
0 |
977 |
by Corvin Wed, 2020-12-30 09:21 |
|
|
Pepspec error by almeida85 » Mon, 2022-05-02 04:07 |
1 |
980 |
by almeida85 Mon, 2022-05-02 05:05 |
|
|
Flex_ddG crashes when attempting to move 2 chains (e.g. chains_to_move = A,C) by jcampecino » Wed, 2020-05-13 12:22 |
0 |
985 |
by jcampecino Wed, 2020-05-13 12:22 |
|
|
denovo_density don't output a pdb file by ylwang » Sun, 2018-11-18 17:51 |
0 |
989 |
by ylwang Sun, 2018-11-18 17:51 |
|
|
prepack - residue count fails by xfradera » Fri, 2023-01-27 06:36 |
0 |
1,003 |
by xfradera Fri, 2023-01-27 06:36 |
|
|
how to run ala_scan.xml by xinmiaohe » Mon, 2019-08-26 09:38 |
0 |
1,003 |
by xinmiaohe Mon, 2019-08-26 09:38 |
|
|
Docking of multichain oligomers by sdh_h » Wed, 2020-03-25 12:43 |
0 |
1,005 |
by sdh_h Wed, 2020-03-25 12:43 |
|
|
Nanobody design by chandana » Tue, 2022-08-09 20:36 |
0 |
1,005 |
by chandana Tue, 2022-08-09 20:36 |
|
|
Should I be stripping water molecules from my input structure for Rosetta Design? by chrisHKL » Wed, 2021-03-24 14:22 |
1 |
1,006 |
by smlewis Wed, 2021-03-24 14:59 |
|
|
ERROR: APBS failed to generate the result file. by bhavranek » Sat, 2021-12-18 11:01 |
1 |
1,006 |
by bhavranek Sun, 2021-12-26 21:05 |
|
|
Problems with mpi version of antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 23:06 |
0 |
1,007 |
by Sunyp_IM Thu, 2020-05-28 23:07 |
|
|
core.pose.util: (0) {0} [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard by ldx022 » Thu, 2023-03-16 04:13 |
0 |
1,007 |
by ldx022 Thu, 2023-03-16 04:13 |
|
|
[Solved] Resetting a pose with RigidBodyTransMover by bjharris » Wed, 2021-01-13 14:01 |
1 |
1,011 |
by bjharris Fri, 2021-01-22 17:34 |
|
|
How to use base_pair_constraint for RNA as a constraint term？ by yels » Sat, 2021-04-03 01:19 |
1 |
1,015 |
by everyday847 Sun, 2021-04-04 12:48 |
|
|
Disulfidize- "Extra content at the end of the document" by ldlamini » Tue, 2022-05-17 02:37 |
1 |
1,016 |
by rmoretti Tue, 2022-05-17 07:29 |
|
|
comparative modelling of a complex by sdh_h » Sun, 2017-12-17 06:07 |
0 |
1,021 |
by sdh_h Sun, 2017-12-17 06:07 |
|
|
different value of score from rna_denovo and rna_score? by yikanzhang » Wed, 2021-02-03 07:17 |
1 |
1,021 |
by CameronJA Tue, 2021-06-15 20:02 |
|
|
Using GlycanDock and the Antibody Affinity Maturation protocol. by tbelec » Mon, 2022-02-28 12:37 |
0 |
1,025 |
by tbelec Mon, 2022-02-28 12:37 |
|
|
Modeling-Using RosettaCM by jlawrie » Wed, 2020-08-12 08:46 |
1 |
1,025 |
by jlawrie Wed, 2020-08-12 08:47 |
|
|
Input structure by Soler » Mon, 2020-09-28 13:18 |
1 |
1,029 |
by ssrb Tue, 2020-09-29 12:37 |
|
|
Error when using Remodel on a protein with a chemically bound ligand by Pappmaschee » Wed, 2020-12-16 09:23 |
0 |
1,034 |
by Pappmaschee Wed, 2020-12-16 09:23 |
|
|
Unknown Element "SE" when generating NCAA params file containing selenium by liuwenxi » Thu, 2022-08-04 16:24 |
2 |
1,037 |
by liuwenxi Fri, 2022-08-05 09:50 |
|
|
trRosetta - Nan occuring in Hbond calculation by y_atsmonraz » Mon, 2021-10-04 09:16 |
1 |
1,045 |
by shivarawat115 Mon, 2022-04-11 16:10 |
|
|
Using Rmsd RosettaScripts filter with alignment files by bjharris » Sun, 2020-11-08 15:51 |
1 |
1,052 |
by rmoretti Sun, 2020-11-08 18:56 |
|
|
Generating the 3-mer and 9-mer fragments by Prasoon » Wed, 2022-02-09 09:04 |
0 |
1,059 |
by Prasoon Wed, 2022-02-09 09:04 |
|
|
Secondary Matching build_sets Error by enmirts » Wed, 2018-03-28 10:33 |
0 |
1,060 |
by enmirts Wed, 2018-03-28 10:34 |
|
|
Dock two domains using topology broker by sn » Thu, 2017-10-05 17:07 |
0 |
1,079 |
by sn Thu, 2017-10-05 17:07 |
|
|
Membrane Abinitio modeling error by jkyan007 » Thu, 2020-10-29 03:30 |
1 |
1,083 |
by noahC_noahDo Tue, 2020-11-17 10:35 |
|
|
Interesting scoring performance in flexpepdock against random peptides by ziqi1234 » Fri, 2017-12-08 07:52 |
0 |
1,083 |
by ziqi1234 Fri, 2017-12-08 07:52 |
|
|
NCAA Rotamers for Cyclosporin by marinok » Mon, 2020-09-28 14:11 |
0 |
1,084 |
by marinok Mon, 2020-09-28 14:11 |
|
|
ERROR: Assertion `static_cast< size_type >( i - l_ ) < super::size()` failed. ERROR:: Exit from: src/utility/vectorL.hh line: 42 by yliang20 » Wed, 2022-06-15 22:22 |
2 |
1,085 |
by jxw Wed, 2023-10-11 10:04 |
|
|
Python2 script in Rosetta3.13 by ddhoyo » Wed, 2021-09-15 04:05 |
1 |
1,087 |
by matteoferla Wed, 2021-09-15 06:04 |
|
|
Topobuilder segmentation fault by tatsiana.bylund » Mon, 2021-08-09 07:10 |
0 |
1,090 |
by tatsiana.bylund Mon, 2021-08-09 07:10 |
|
|
Flexpepdock I_hb scoring term by mbakalar » Fri, 2018-08-31 13:05 |
0 |
1,091 |
by mbakalar Fri, 2018-08-31 13:06 |
|
|
antibody.mpi.linuxgccrelease some antibodies failing to model by drewaight » Mon, 2020-11-02 17:07 |
0 |
1,099 |
by drewaight Mon, 2020-11-02 17:07 |
|
|
Constraint generator by Alison_Yajie » Wed, 2020-06-17 20:14 |
1 |
1,104 |
by Alison_Yajie Wed, 2020-06-17 20:35 |
|
|
Undesirable behaviour of PoseFromSFRBuilder regarding Hydrogen atoms by Corvin » Wed, 2020-12-02 04:00 |
1 |
1,104 |
by rmoretti Wed, 2020-12-02 07:27 |
Log in to post new content in the forum.
