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Rosetta 3 - Applications
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fa_plane enregy term in scoring weights by ytao » Fri, 2012-11-30 20:25 |
4 |
4,707 |
by smlewis Mon, 2014-04-21 06:47 |
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Symmetric Minimization by aroop » Mon, 2012-12-17 11:45 |
5 |
4,373 |
by aroop Mon, 2014-04-21 06:47 |
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Homodimer interface design by petrikigor » Fri, 2012-11-16 10:57 |
3 |
4,767 |
by rmoretti Mon, 2014-04-21 06:47 |
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RosettaDNA error by deltag » Fri, 2012-12-07 06:09 |
10 |
9,250 |
by deltag Mon, 2014-04-21 06:47 |
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Rosetta Scripts: Loop Modeling w. Selective Repacking by aroop » Mon, 2013-01-07 08:45 |
24 |
18,362 |
by aroop Mon, 2014-04-21 06:47 |
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How to use -cst_fa_file and -relax:constrain_relax_to_native_coords at the same time by Anatol » Thu, 2012-11-29 14:12 |
11 |
9,987 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta residue design for DNA binding by deltag » Wed, 2012-12-12 11:35 |
5 |
8,837 |
by deltag Mon, 2014-04-21 06:47 |
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where is pdb2vall.py by tevang » Thu, 2013-01-24 13:35 |
7 |
6,697 |
by dktest Mon, 2014-04-21 06:47 |
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P-P docking with suitable constraint type by Yao Wu » Tue, 2012-11-13 18:03 |
5 |
6,650 |
by rmoretti Mon, 2014-04-21 06:47 |
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cryptic error message from remodel in rosetta_scripts by petrikigor » Mon, 2012-12-03 15:13 |
9 |
8,088 |
by petrikigor Mon, 2014-04-21 06:47 |
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the extracted pdb file by benniu2004 » Fri, 2013-01-04 17:55 |
12 |
13,129 |
by benniu2004 Mon, 2014-04-21 06:47 |
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Enzyme design output silent file and score file by deltag » Fri, 2012-09-28 13:07 |
1 |
2,290 |
by rmoretti Mon, 2014-04-21 06:47 |
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Fixbb Multiple Resfiles by protos_heis » Mon, 2012-10-15 10:34 |
18 |
14,319 |
by protos_heis Mon, 2014-04-21 06:47 |
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fix the left part doesn't work by albumns » Wed, 2012-11-07 00:02 |
9 |
6,613 |
by albumns Mon, 2014-04-21 06:47 |
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Write one's own constraint type by djpittdj » Thu, 2012-11-08 12:29 |
7 |
6,315 |
by smlewis Mon, 2014-04-21 06:47 |
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homology modeling with end extension by fred » Mon, 2012-10-08 14:19 |
19 |
16,776 |
by xpzhang Mon, 2014-04-21 06:47 |
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enzyme design and output_matchres_only by petrikigor » Wed, 2012-10-24 18:45 |
6 |
4,926 |
by petrikigor Mon, 2014-04-21 06:47 |
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homology modelling with DNA by zadie1118 » Fri, 2012-09-28 06:35 |
4 |
5,475 |
by rmoretti Mon, 2014-04-21 06:47 |
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AbinitioRelax usage (3.4) by atruong » Fri, 2012-10-12 13:38 |
12 |
10,464 |
by atruong Mon, 2014-04-21 06:47 |
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membrane ab initio modeling application with constraints by ytao » Thu, 2012-11-08 11:56 |
2 |
4,081 |
by ytao Mon, 2014-04-21 06:47 |
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FlexPepDock for protein containing multiple chains by Dimitrov » Mon, 2012-10-08 08:31 |
3 |
3,794 |
by smlewis Mon, 2014-04-21 06:47 |
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How to calculate dG? by yperez » Mon, 2012-10-22 07:28 |
1 |
2,853 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem with AtomPair constraint by jarek » Tue, 2012-10-09 07:28 |
1 |
2,255 |
by smlewis Mon, 2014-04-21 06:47 |
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does the loop kinetic support MPI now? by albumns » Fri, 2012-10-26 06:31 |
2 |
2,385 |
by smlewis Mon, 2014-04-21 06:47 |
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homology modeling- Error: length mismatch between sequence and alignment. by pdbb » Mon, 2012-10-01 07:57 |
2 |
4,249 |
by pdbb Mon, 2014-04-21 06:47 |
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Problem with hotspot constraints. by jarek » Wed, 2012-10-17 03:22 |
6 |
5,396 |
by xfliu Mon, 2014-04-21 06:47 |
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protein docking failed by albumns » Thu, 2012-11-08 02:59 |
6 |
5,826 |
by rmoretti Mon, 2014-04-21 06:47 |
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segmentation fault after core.kinematics.FoldTree in homology modeling by pdbb » Mon, 2012-10-08 14:27 |
7 |
7,160 |
by rmoretti Mon, 2014-04-21 06:47 |
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Backrub Params Files by protos_heis » Tue, 2012-09-18 06:15 |
4 |
4,900 |
by protos_heis Mon, 2014-04-21 06:47 |
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make fragment by zadie1118 » Thu, 2012-08-30 07:45 |
3 |
4,935 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaDock - Constraints File by edpryor » Wed, 2012-09-19 06:23 |
9 |
12,062 |
by joeg Mon, 2014-04-21 06:47 |
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FlexPepDock in RosettaScripts keeps running by gw » Tue, 2012-08-21 12:31 |
1 |
2,496 |
by smlewis Mon, 2014-04-21 06:47 |
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Flexible peptide docking with flexible receptor backbone by tevang » Fri, 2012-09-14 11:18 |
1 |
2,631 |
by smlewis Mon, 2014-04-21 06:47 |
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Multiple Chain Comparative Modeling - End result is not even close to template structure by eskici » Wed, 2012-08-29 08:09 |
2 |
3,630 |
by eskici Mon, 2014-04-21 06:47 |
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fixbb design using damped LJ by Anonymous » Fri, 2012-08-17 03:51 |
8 |
7,521 |
by Anonymous Mon, 2014-04-21 06:47 |
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Folding and Docking using Symmetry by danielles » Wed, 2012-09-12 11:32 |
0 |
1,781 |
by danielles Mon, 2014-04-21 06:47 |
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Problems running pmut in parallel with openmpi by RMJ » Fri, 2012-09-21 06:25 |
2 |
3,810 |
by RMJ Mon, 2014-04-21 06:47 |
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Comparative modeling stops with "no more batches to process... " / no output by eskici » Tue, 2012-08-28 12:13 |
6 |
5,974 |
by eskici Mon, 2014-04-21 06:47 |
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Abinitio (3.4) Error: no fragment to compute secondary structure by skovacs » Tue, 2012-09-18 13:49 |
6 |
7,139 |
by skovacs Mon, 2014-04-21 06:47 |
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membrane score weights by ytao » Sat, 2012-09-08 06:56 |
2 |
2,821 |
by ytao Mon, 2014-04-21 06:47 |
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Rosetta scoring by Dimitrov » Thu, 2012-09-20 01:54 |
7 |
9,342 |
by attesor Mon, 2014-04-21 06:47 |
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ddg dG_separate by gw » Wed, 2012-08-22 11:25 |
5 |
5,767 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaSurface in 3.4? by skovacs » Tue, 2012-07-10 16:02 |
2 |
2,860 |
by mpacella Mon, 2014-04-21 06:47 |
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relax constraints not minimized by m_grisewood » Fri, 2012-08-10 08:31 |
2 |
3,498 |
by m_grisewood Mon, 2014-04-21 06:47 |
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relax VS. backrub by jiongzhang » Mon, 2012-07-02 14:52 |
1 |
2,458 |
by smlewis Mon, 2014-04-21 06:47 |
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how to repacking loop while freezing other residues? by jfhuang » Wed, 2012-07-25 06:59 |
10 |
8,332 |
by jfhuang Mon, 2014-04-21 06:47 |
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where to look for positive sign for solution in mr-rosetta3.4? by lchen » Tue, 2012-07-10 09:38 |
2 |
2,925 |
by lchen Mon, 2014-04-21 06:47 |
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ndruns and nstruct in fixbb by Anonymous » Tue, 2012-08-07 01:52 |
5 |
5,932 |
by Anonymous Mon, 2014-04-21 06:47 |
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"Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application by xfliu » Thu, 2012-06-21 09:07 |
4 |
4,852 |
by smlewis Mon, 2014-04-21 06:47 |
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Over-docking with FlexPepDock by gw » Fri, 2012-07-20 13:10 |
5 |
5,368 |
by rmoretti Mon, 2014-04-21 06:47 |
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Changing scoring function for fixbb protocol by mdyini » Sat, 2012-07-07 18:43 |
4 |
3,975 |
by mdyini Mon, 2014-04-21 06:47 |
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DDG monomer and backrub motions by yperez » Thu, 2012-06-21 08:10 |
2 |
3,191 |
by yperez Mon, 2014-04-21 06:47 |
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Docking structures with ligands in cryo-EM maps by galushin » Wed, 2012-07-11 12:40 |
1 |
4,447 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Using MoveMap within Relax Application? by m_grisewood » Mon, 2012-08-13 12:21 |
5 |
6,798 |
by m_grisewood Mon, 2014-04-21 06:47 |
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RosettaVIP: ERROR: seqpos <= size() by Anonymous » Thu, 2012-07-26 07:30 |
5 |
6,199 |
by Anonymous Mon, 2014-04-21 06:47 |
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Ligand dock analysis by sacch » Tue, 2012-05-22 01:20 |
3 |
3,691 |
by glemmon Mon, 2014-04-21 06:47 |
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Flexible docking using rosetta density-fitting for DNA by helm » Thu, 2012-06-14 23:43 |
1 |
2,636 |
by smlewis Mon, 2014-04-21 06:47 |
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null mutation with ddg_monomer by fred » Fri, 2012-05-11 07:16 |
4 |
3,958 |
by fred Mon, 2014-04-21 06:47 |
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Holes output interpretation by lah435 » Mon, 2012-06-04 15:02 |
1 |
2,356 |
by smlewis Mon, 2014-04-21 06:47 |
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ligand dock question by sacch » Sun, 2012-05-20 19:49 |
4 |
4,250 |
by sacch Mon, 2014-04-21 06:47 |
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Fold and Dock - chains not in contact by arthuc01 » Wed, 2012-06-13 01:45 |
2 |
2,916 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg_monomer conformational search... by yperez » Wed, 2012-05-09 11:10 |
5 |
4,673 |
by yperez Mon, 2014-04-21 06:47 |
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a question about ligand docking by yzhou » Wed, 2012-05-30 18:57 |
5 |
4,591 |
by yzhou Mon, 2014-04-21 06:47 |
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rosetta3.4 fragment file problem by David Hoover » Wed, 2012-05-16 14:42 |
4 |
3,987 |
by dgront Mon, 2014-04-21 06:47 |
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Incorrect Jump being set in RosettaScripts docking mover by weehee » Fri, 2012-06-08 10:23 |
6 |
7,284 |
by rmoretti Mon, 2014-04-21 06:47 |
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Rosetta DNA - Protein-DNA scoring function and binding energy by tanoramb » Tue, 2012-05-08 14:00 |
1 |
4,439 |
by smlewis Mon, 2014-04-21 06:47 |
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how to pick fragments for a transmembrane protein by tevang » Mon, 2012-05-28 06:52 |
1 |
2,144 |
by tevang Mon, 2014-04-21 06:47 |
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modeling missing linker in a protein by Isaure de Beauchene » Fri, 2012-05-11 10:13 |
1 |
3,314 |
by smlewis Mon, 2014-04-21 06:47 |
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Where is the RosettaHoles2 executable? by lah435 » Mon, 2012-06-04 15:15 |
11 |
8,165 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg_monomer problem by deltag » Wed, 2012-04-04 07:53 |
11 |
11,604 |
by smlewis Mon, 2014-04-21 06:47 |
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analysis of clustering by loris.moretti » Thu, 2012-04-19 02:52 |
3 |
6,796 |
by rmoretti Mon, 2014-04-21 06:47 |
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error with fragment_picker.linuxgccrelease by jiongzhang » Tue, 2012-04-17 09:07 |
3 |
3,351 |
by smlewis Mon, 2014-04-21 06:47 |
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Single Strand DNA (ssDNA) 3D structure prediction by mkoohim » Fri, 2012-04-06 00:52 |
4 |
14,152 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains by ahonegger » Tue, 2012-04-24 01:34 |
3 |
3,990 |
by ahonegger Mon, 2014-04-21 06:47 |
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ddG Monomer Low Res Protocol Convergence by harshkhare » Thu, 2012-03-01 00:45 |
2 |
3,657 |
by harshkhare Mon, 2014-04-21 06:47 |
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Surface accessible residue as a constraint. by arthuc01 » Fri, 2012-03-09 23:27 |
1 |
2,157 |
by smlewis Mon, 2014-04-21 06:47 |
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fragment_picker bug by David Hoover » Wed, 2012-02-29 11:43 |
0 |
1,692 |
by David Hoover Mon, 2014-04-21 06:47 |
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Symmetry Docking and Clustering with Ligands by skovacs » Wed, 2012-03-07 16:46 |
9 |
11,153 |
by Anonymous Mon, 2014-04-21 06:47 |
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how to run my openmp programe in rosetta3.3? by lihowe » Mon, 2012-02-27 23:43 |
1 |
2,296 |
by smlewis Mon, 2014-04-21 06:47 |
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Residue_energy_breakdown utility by cn » Sat, 2012-03-17 06:11 |
3 |
3,392 |
by cn Mon, 2014-04-21 06:47 |
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FloppyTail bugs for N-terminal tails by Dave C » Thu, 2012-03-01 13:06 |
18 |
14,963 |
by bbarryabc Mon, 2014-04-21 06:47 |
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docking in rosetta 3.3 by Ammu » Thu, 2012-03-15 12:03 |
6 |
5,709 |
by smlewis Mon, 2014-04-21 06:47 |
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Relax a structure with >1 copy of a modified residue fails [Solved] by franfdez » Wed, 2012-02-08 00:47 |
6 |
6,129 |
by franfdez Mon, 2014-04-21 06:47 |
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ab initio protein prediction using homologs by justin » Mon, 2012-02-13 07:52 |
5 |
5,401 |
by justin Mon, 2014-04-21 06:47 |
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parameterizing new residues by chiendarret » Fri, 2012-02-03 22:59 |
3 |
7,385 |
by rmoretti Mon, 2014-04-21 06:47 |
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pair energies across interface by irini » Fri, 2012-02-10 09:17 |
5 |
4,682 |
by Anonymous Mon, 2014-04-21 06:47 |
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Generate fragment locally by deltag » Wed, 2012-02-01 06:26 |
2 |
3,309 |
by deltag Mon, 2014-04-21 06:47 |
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Difference between relax and mimimize_with_cst by basvandenberg » Thu, 2012-02-09 00:16 |
1 |
2,692 |
by rmoretti Mon, 2014-04-21 06:47 |
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loopmodel issue by chiendarret » Fri, 2012-01-27 00:51 |
1 |
2,965 |
by smlewis Mon, 2014-04-21 06:47 |
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Does linker modeling exist? by aroop » Wed, 2012-02-22 07:34 |
5 |
5,049 |
by smlewis Mon, 2014-04-21 06:47 |
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Idealize in Rosetta 3.3 by jadolfbr » Tue, 2011-12-06 11:59 |
2 |
3,051 |
by jadolfbr Mon, 2014-04-21 06:47 |
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ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly' by smiruthi » Mon, 2011-12-12 14:27 |
1 |
2,671 |
by rmoretti Mon, 2014-04-21 06:47 |
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limit_cluster_size default value by sacch » Thu, 2011-11-24 17:57 |
2 |
2,746 |
by sacch Mon, 2014-04-21 06:47 |
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proline patching problem by xun » Tue, 2012-01-03 11:15 |
3 |
3,735 |
by xun Mon, 2014-04-21 06:47 |
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cluster.mpi running in MPI mode? by sacch » Fri, 2011-11-18 23:30 |
2 |
4,243 |
by sacch Mon, 2014-04-21 06:47 |
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ddg with ligands by bhaines1 » Mon, 2011-12-05 14:32 |
4 |
5,163 |
by rmoretti Mon, 2014-04-21 06:47 |
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Runnig Abinitio & score app by Gaurav_kumar » Wed, 2011-11-23 20:45 |
9 |
11,128 |
by rmoretti Mon, 2014-04-21 06:47 |
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Run AbinitioRelax (rosetta 3.3) on cluster by grisha » Mon, 2011-12-12 14:20 |
18 |
16,746 |
by grisha Mon, 2014-04-21 06:47 |
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How do you use two patches simulataneously with ab initio folding? by smiruthi » Wed, 2011-12-21 15:24 |
5 |
5,039 |
by wangyr Mon, 2014-04-21 06:47 |
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loop modeling during enzyme design? by lzx32 » Wed, 2011-11-16 00:30 |
6 |
5,527 |
by lzx32 Mon, 2014-04-21 06:47 |
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