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Rosetta 3 - Applications
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Topic / Topic starter | Replies | Views | Last post | |
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number of structures in homology modeling for cluster analysis by pdbb » Fri, 2013-04-12 08:52 |
1 |
2,682 |
by smlewis Mon, 2014-04-21 06:47 |
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docking with constraints by talavera » Tue, 2013-05-07 01:50 |
1 |
4,090 |
by rmoretti Mon, 2014-04-21 06:47 |
|
mover "RepackMinimize" does not support chains > 2? by jarod » Mon, 2013-05-20 02:17 |
6 |
7,587 |
by jarod Mon, 2014-04-21 06:47 |
|
Problems when running Rosetta VIP with cofactors by Basantab » Fri, 2013-04-26 13:31 |
14 |
15,175 |
by Basantab Mon, 2014-04-21 06:47 |
|
Modeling flexible linkers with Floppytail by pdbb » Sun, 2013-05-12 15:55 |
2 |
3,317 |
by smlewis Mon, 2014-04-21 06:47 |
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Pepspec Errors running 3.4 by rrphenix » Tue, 2013-05-28 12:08 |
4 |
4,454 |
by rmoretti Mon, 2014-04-21 06:47 |
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make_rot_lib issue by jarek » Thu, 2013-04-11 08:21 |
4 |
5,008 |
by smlewis Mon, 2014-04-21 06:47 |
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in silico affinity maturation design by jarod » Mon, 2013-05-20 02:07 |
11 |
12,623 |
by jarod Mon, 2014-04-21 06:47 |
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PDB format for RosettaDNA by brspurri » Thu, 2013-05-30 11:21 |
5 |
6,523 |
by brspurri Mon, 2014-04-21 06:47 |
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Error when running Remodel with EnzDes constraint file by aloshbau » Wed, 2013-04-17 22:23 |
2 |
4,055 |
by aloshbau Mon, 2014-04-21 06:47 |
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ligand_docking_analysis by Prasanth Kumar » Thu, 2013-05-09 23:51 |
4 |
5,129 |
by rmoretti Mon, 2014-04-21 06:47 |
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No interface for protein - Interface Analyzer by aloshbau » Tue, 2013-05-21 21:00 |
1 |
2,867 |
by jarod Mon, 2014-04-21 06:47 |
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Running RosettaHoles2 by weehee » Wed, 2013-02-13 09:35 |
3 |
3,797 |
by weehee Mon, 2014-04-21 06:47 |
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membrane scoring function performance by tevang » Wed, 2013-03-20 08:40 |
15 |
15,294 |
by smlewis Mon, 2014-04-21 06:47 |
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symmetric fixbb design with design_hpatch by sdh_h » Sat, 2013-02-02 01:48 |
2 |
2,953 |
by ronj Mon, 2014-04-21 06:47 |
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Results of enzyme_design not consistent with Resfile by yogeshkd » Thu, 2013-02-14 15:56 |
6 |
6,640 |
by yogeshkd Mon, 2014-04-21 06:47 |
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dihedral_between_bonded_children: atoms are not both my children! by pdbb » Fri, 2013-04-05 06:40 |
3 |
3,392 |
by smlewis Mon, 2014-04-21 06:47 |
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ligand conformer generation for enzyme design by bo » Mon, 2013-02-11 16:51 |
1 |
2,496 |
by smlewis Mon, 2014-04-21 06:47 |
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Reproducing the exact result using information from previos run by nawsad » Thu, 2013-03-14 12:05 |
2 |
2,676 |
by nawsad Mon, 2014-04-21 06:47 |
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Docking with constraints by ytao » Tue, 2013-04-02 09:45 |
6 |
8,070 |
by smlewis Mon, 2014-04-21 06:47 |
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Multiple ligands in enzyme design application by yogeshkd » Mon, 2013-02-11 10:13 |
4 |
5,390 |
by yogeshkd Mon, 2014-04-21 06:47 |
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loop re-modeling std::out_of_range by rlwoltz » Tue, 2013-03-12 18:11 |
9 |
9,022 |
by smlewis Mon, 2014-04-21 06:47 |
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Fold tree C->N: RosettaScripts by aroop » Wed, 2013-02-13 10:31 |
8 |
8,229 |
by smlewis Mon, 2014-04-21 06:47 |
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loopmodel thinks there are no residues in the pose by lah435 » Wed, 2013-03-27 02:46 |
3 |
4,264 |
by rmoretti Mon, 2014-04-21 06:47 |
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comparative modelling and broker by felipet » Tue, 2013-02-05 08:33 |
4 |
4,371 |
by smlewis Mon, 2014-04-21 06:47 |
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[TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed by tevang » Wed, 2013-04-10 15:07 |
5 |
4,930 |
by rmoretti Mon, 2014-04-21 06:47 |
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favor native residue in fixBB design by ast » Mon, 2012-12-10 06:00 |
4 |
4,862 |
by smlewis Mon, 2014-04-21 06:47 |
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problem with fixed_membrane option of membrane abinitio by yescalona » Thu, 2013-01-17 15:42 |
3 |
3,582 |
by smlewis Mon, 2014-04-21 06:47 |
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fa_plane enregy term in scoring weights by ytao » Fri, 2012-11-30 20:25 |
4 |
5,055 |
by smlewis Mon, 2014-04-21 06:47 |
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Symmetric Minimization by aroop » Mon, 2012-12-17 11:45 |
5 |
4,737 |
by aroop Mon, 2014-04-21 06:47 |
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Homodimer interface design by petrikigor » Fri, 2012-11-16 10:57 |
3 |
5,054 |
by rmoretti Mon, 2014-04-21 06:47 |
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RosettaDNA error by deltag » Fri, 2012-12-07 06:09 |
10 |
9,921 |
by deltag Mon, 2014-04-21 06:47 |
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Rosetta Scripts: Loop Modeling w. Selective Repacking by aroop » Mon, 2013-01-07 08:45 |
24 |
19,755 |
by aroop Mon, 2014-04-21 06:47 |
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How to use -cst_fa_file and -relax:constrain_relax_to_native_coords at the same time by Anatol » Thu, 2012-11-29 14:12 |
11 |
10,690 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta residue design for DNA binding by deltag » Wed, 2012-12-12 11:35 |
5 |
9,225 |
by deltag Mon, 2014-04-21 06:47 |
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where is pdb2vall.py by tevang » Thu, 2013-01-24 13:35 |
7 |
7,147 |
by dktest Mon, 2014-04-21 06:47 |
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P-P docking with suitable constraint type by Yao Wu » Tue, 2012-11-13 18:03 |
5 |
7,062 |
by rmoretti Mon, 2014-04-21 06:47 |
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cryptic error message from remodel in rosetta_scripts by petrikigor » Mon, 2012-12-03 15:13 |
9 |
8,815 |
by petrikigor Mon, 2014-04-21 06:47 |
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the extracted pdb file by benniu2004 » Fri, 2013-01-04 17:55 |
12 |
14,030 |
by benniu2004 Mon, 2014-04-21 06:47 |
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fold and dock protocol not working by ytao » Mon, 2012-11-26 15:33 |
1 |
2,472 |
by smlewis Mon, 2014-04-21 06:47 |
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Can only relax one structure at a time by lah435 » Wed, 2012-12-12 01:55 |
3 |
3,983 |
by smlewis Mon, 2014-04-21 06:47 |
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Flexpep docking freezing issue at "press enter to continue" by rlwoltz » Tue, 2013-01-22 13:31 |
2 |
3,178 |
by rlwoltz Mon, 2014-04-21 06:47 |
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Can't find RosettaRemodel in Rosetta 3.4 by petrikigor » Mon, 2012-12-03 13:56 |
0 |
1,792 |
by petrikigor Mon, 2014-04-21 06:47 |
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to create the template pdb file by benniu2004 » Sat, 2012-12-29 23:04 |
8 |
8,759 |
by benniu2004 Mon, 2014-04-21 06:47 |
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too many constraints result in no output pose by Yao Wu » Sun, 2012-11-18 23:45 |
5 |
6,197 |
by smlewis Mon, 2014-04-21 06:47 |
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Enzyme design output silent file and score file by deltag » Fri, 2012-09-28 13:07 |
1 |
2,421 |
by rmoretti Mon, 2014-04-21 06:47 |
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Fixbb Multiple Resfiles by protos_heis » Mon, 2012-10-15 10:34 |
18 |
15,439 |
by protos_heis Mon, 2014-04-21 06:47 |
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membrane ab initio modeling application with constraints by ytao » Thu, 2012-11-08 11:56 |
2 |
4,299 |
by ytao Mon, 2014-04-21 06:47 |
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fix the left part doesn't work by albumns » Wed, 2012-11-07 00:02 |
9 |
7,160 |
by albumns Mon, 2014-04-21 06:47 |
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homology modeling with end extension by fred » Mon, 2012-10-08 14:19 |
19 |
17,877 |
by xpzhang Mon, 2014-04-21 06:47 |
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enzyme design and output_matchres_only by petrikigor » Wed, 2012-10-24 18:45 |
6 |
5,355 |
by petrikigor Mon, 2014-04-21 06:47 |
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homology modelling with DNA by zadie1118 » Fri, 2012-09-28 06:35 |
4 |
5,823 |
by rmoretti Mon, 2014-04-21 06:47 |
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AbinitioRelax usage (3.4) by atruong » Fri, 2012-10-12 13:38 |
12 |
11,346 |
by atruong Mon, 2014-04-21 06:47 |
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FlexPepDock for protein containing multiple chains by Dimitrov » Mon, 2012-10-08 08:31 |
3 |
4,057 |
by smlewis Mon, 2014-04-21 06:47 |
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How to calculate dG? by yperez » Mon, 2012-10-22 07:28 |
1 |
3,130 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem with AtomPair constraint by jarek » Tue, 2012-10-09 07:28 |
1 |
2,418 |
by smlewis Mon, 2014-04-21 06:47 |
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does the loop kinetic support MPI now? by albumns » Fri, 2012-10-26 06:31 |
2 |
2,589 |
by smlewis Mon, 2014-04-21 06:47 |
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homology modeling- Error: length mismatch between sequence and alignment. by pdbb » Mon, 2012-10-01 07:57 |
2 |
4,487 |
by pdbb Mon, 2014-04-21 06:47 |
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Problem with hotspot constraints. by jarek » Wed, 2012-10-17 03:22 |
6 |
5,885 |
by xfliu Mon, 2014-04-21 06:47 |
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Write one's own constraint type by djpittdj » Thu, 2012-11-08 12:29 |
7 |
6,748 |
by smlewis Mon, 2014-04-21 06:47 |
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protein docking failed by albumns » Thu, 2012-11-08 02:59 |
6 |
6,257 |
by rmoretti Mon, 2014-04-21 06:47 |
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segmentation fault after core.kinematics.FoldTree in homology modeling by pdbb » Mon, 2012-10-08 14:27 |
7 |
7,613 |
by rmoretti Mon, 2014-04-21 06:47 |
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Backrub Params Files by protos_heis » Tue, 2012-09-18 06:15 |
4 |
5,249 |
by protos_heis Mon, 2014-04-21 06:47 |
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make fragment by zadie1118 » Thu, 2012-08-30 07:45 |
3 |
5,244 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaDock - Constraints File by edpryor » Wed, 2012-09-19 06:23 |
9 |
12,810 |
by joeg Mon, 2014-04-21 06:47 |
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FlexPepDock in RosettaScripts keeps running by gw » Tue, 2012-08-21 12:31 |
1 |
2,653 |
by smlewis Mon, 2014-04-21 06:47 |
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Flexible peptide docking with flexible receptor backbone by tevang » Fri, 2012-09-14 11:18 |
1 |
2,781 |
by smlewis Mon, 2014-04-21 06:47 |
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Multiple Chain Comparative Modeling - End result is not even close to template structure by eskici » Wed, 2012-08-29 08:09 |
2 |
3,820 |
by eskici Mon, 2014-04-21 06:47 |
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fixbb design using damped LJ by Anonymous » Fri, 2012-08-17 03:51 |
8 |
8,016 |
by Anonymous Mon, 2014-04-21 06:47 |
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Folding and Docking using Symmetry by danielles » Wed, 2012-09-12 11:32 |
0 |
1,898 |
by danielles Mon, 2014-04-21 06:47 |
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Problems running pmut in parallel with openmpi by RMJ » Fri, 2012-09-21 06:25 |
2 |
4,052 |
by RMJ Mon, 2014-04-21 06:47 |
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Comparative modeling stops with "no more batches to process... " / no output by eskici » Tue, 2012-08-28 12:13 |
6 |
6,396 |
by eskici Mon, 2014-04-21 06:47 |
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Abinitio (3.4) Error: no fragment to compute secondary structure by skovacs » Tue, 2012-09-18 13:49 |
6 |
7,645 |
by skovacs Mon, 2014-04-21 06:47 |
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membrane score weights by ytao » Sat, 2012-09-08 06:56 |
2 |
3,013 |
by ytao Mon, 2014-04-21 06:47 |
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Rosetta scoring by Dimitrov » Thu, 2012-09-20 01:54 |
7 |
9,998 |
by attesor Mon, 2014-04-21 06:47 |
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ddg dG_separate by gw » Wed, 2012-08-22 11:25 |
5 |
6,231 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaSurface in 3.4? by skovacs » Tue, 2012-07-10 16:02 |
2 |
3,064 |
by mpacella Mon, 2014-04-21 06:47 |
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relax constraints not minimized by m_grisewood » Fri, 2012-08-10 08:31 |
2 |
3,766 |
by m_grisewood Mon, 2014-04-21 06:47 |
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relax VS. backrub by jiongzhang » Mon, 2012-07-02 14:52 |
1 |
2,631 |
by smlewis Mon, 2014-04-21 06:47 |
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how to repacking loop while freezing other residues? by jfhuang » Wed, 2012-07-25 06:59 |
10 |
8,910 |
by jfhuang Mon, 2014-04-21 06:47 |
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where to look for positive sign for solution in mr-rosetta3.4? by lchen » Tue, 2012-07-10 09:38 |
2 |
3,127 |
by lchen Mon, 2014-04-21 06:47 |
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ndruns and nstruct in fixbb by Anonymous » Tue, 2012-08-07 01:52 |
5 |
6,388 |
by Anonymous Mon, 2014-04-21 06:47 |
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"Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application by xfliu » Thu, 2012-06-21 09:07 |
4 |
5,186 |
by smlewis Mon, 2014-04-21 06:47 |
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Over-docking with FlexPepDock by gw » Fri, 2012-07-20 13:10 |
5 |
5,742 |
by rmoretti Mon, 2014-04-21 06:47 |
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Changing scoring function for fixbb protocol by mdyini » Sat, 2012-07-07 18:43 |
4 |
4,283 |
by mdyini Mon, 2014-04-21 06:47 |
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DDG monomer and backrub motions by yperez » Thu, 2012-06-21 08:10 |
2 |
3,382 |
by yperez Mon, 2014-04-21 06:47 |
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Docking structures with ligands in cryo-EM maps by galushin » Wed, 2012-07-11 12:40 |
1 |
4,621 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Using MoveMap within Relax Application? by m_grisewood » Mon, 2012-08-13 12:21 |
5 |
7,217 |
by m_grisewood Mon, 2014-04-21 06:47 |
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RosettaVIP: ERROR: seqpos <= size() by Anonymous » Thu, 2012-07-26 07:30 |
5 |
6,643 |
by Anonymous Mon, 2014-04-21 06:47 |
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Ligand dock analysis by sacch » Tue, 2012-05-22 01:20 |
3 |
3,939 |
by glemmon Mon, 2014-04-21 06:47 |
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Flexible docking using rosetta density-fitting for DNA by helm » Thu, 2012-06-14 23:43 |
1 |
2,827 |
by smlewis Mon, 2014-04-21 06:47 |
|
null mutation with ddg_monomer by fred » Fri, 2012-05-11 07:16 |
4 |
4,248 |
by fred Mon, 2014-04-21 06:47 |
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Holes output interpretation by lah435 » Mon, 2012-06-04 15:02 |
1 |
2,518 |
by smlewis Mon, 2014-04-21 06:47 |
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ligand dock question by sacch » Sun, 2012-05-20 19:49 |
4 |
4,539 |
by sacch Mon, 2014-04-21 06:47 |
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Fold and Dock - chains not in contact by arthuc01 » Wed, 2012-06-13 01:45 |
2 |
3,086 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg_monomer conformational search... by yperez » Wed, 2012-05-09 11:10 |
5 |
5,050 |
by yperez Mon, 2014-04-21 06:47 |
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a question about ligand docking by yzhou » Wed, 2012-05-30 18:57 |
5 |
5,018 |
by yzhou Mon, 2014-04-21 06:47 |
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rosetta3.4 fragment file problem by David Hoover » Wed, 2012-05-16 14:42 |
4 |
4,275 |
by dgront Mon, 2014-04-21 06:47 |
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Incorrect Jump being set in RosettaScripts docking mover by weehee » Fri, 2012-06-08 10:23 |
6 |
7,725 |
by rmoretti Mon, 2014-04-21 06:47 |
|
Rosetta DNA - Protein-DNA scoring function and binding energy by tanoramb » Tue, 2012-05-08 14:00 |
1 |
4,603 |
by smlewis Mon, 2014-04-21 06:47 |
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