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Rosetta 3 - Applications

Topic / Topic starter Repliessort descending Views Last post
Normal topic Local docking: "manually place the two proteins facing each other" ?
by mdeklotz » Fri, 2018-07-20 10:24
5
3,463 by dfcoelho
Tue, 2018-10-16 09:05
Normal topic conway2016 correction on beta-nov15?
by attesor » Wed, 2017-03-15 05:26
5
3,639 by attesor
Thu, 2017-03-16 01:21
Normal topic jd2 quits before reaching -nstruct # in roseta_scripts.mpi.linuxgccrelease
by fradom » Mon, 2017-11-27 02:55
6
3,945 by fradom
Tue, 2017-12-05 01:52
Normal topic RosettaLigand - strange score behavior
by Gerdes » Mon, 2014-02-03 02:24
6
6,012 by Gerdes
Fri, 2014-02-07 06:48
Normal topic Can't generate a cst file to use with ddg_monomer application
by ctqwong » Sat, 2021-03-13 03:53
6
1,977 by ctqwong
Thu, 2021-03-18 02:04
Normal topic Can I believe the antibody design result?
by Sunyp_IM » Mon, 2020-11-30 03:29
6
2,247 by jadolfbr
Sun, 2020-12-06 17:41
Normal topic Enzdes score file discrepancy between generated pdb and scores.out
by eyong123 » Wed, 2015-03-25 08:52
6
6,304 by eyong123
Mon, 2015-06-29 04:44
Normal topic pepspec anchor dock
by Astghik » Tue, 2020-10-20 05:31
6
2,322 by Pappmaschee
Thu, 2020-12-17 02:24
Normal topic Results of enzyme_design not consistent with Resfile
by yogeshkd » Thu, 2013-02-14 15:56
6
5,786 by yogeshkd
Mon, 2014-04-21 06:47
Normal topic How to define pi-pi stacking in cst file?
by lzx32 » Mon, 2011-07-04 23:47
6
7,219 by lzx32
Mon, 2014-04-21 06:47
Normal topic ab inito memberane(error in alignblast.pl)
by kingljy » Tue, 2011-05-03 23:41
6
6,322 by karthishanmugam
Mon, 2014-04-21 06:47
Normal topic Help with enzyme design
by lzx32 » Fri, 2011-04-08 22:29
6
5,648 by lzx32
Mon, 2014-04-21 06:47
Normal topic Rotamers used in fixbb
by lanselibai » Thu, 2014-11-06 02:47
6
5,249 by lanselibai
Tue, 2014-11-11 15:28
Normal topic rosetta_2013wk52: make_fragments.pl failed
by fred » Thu, 2014-01-30 12:41
6
7,736 by rmoretti
Fri, 2014-02-07 08:01
Normal topic scoring of beta sandwich protein
by attesor » Mon, 2014-11-17 08:24
6
5,149 by rmoretti
Thu, 2014-11-20 10:46
Normal topic Incorrect Jump being set in RosettaScripts docking mover
by weehee » Fri, 2012-06-08 10:23
6
6,836 by rmoretti
Mon, 2014-04-21 06:47
Normal topic mover "RepackMinimize" does not support chains > 2?
by jarod » Mon, 2013-05-20 02:17
6
6,712 by jarod
Mon, 2014-04-21 06:47
Normal topic Comparative modeling stops with "no more batches to process... " / no output
by eskici » Tue, 2012-08-28 12:13
6
5,561 by eskici
Mon, 2014-04-21 06:47
Normal topic Line search failed even after resetting Hessian
by Loki01 » Wed, 2017-12-13 16:52
6
4,879 by Loki01
Thu, 2018-02-15 13:54
Normal topic Abinitio (3.4) Error: no fragment to compute secondary structure
by skovacs » Tue, 2012-09-18 13:49
6
6,675 by skovacs
Mon, 2014-04-21 06:47
Normal topic Docking with constraints
by ytao » Tue, 2013-04-02 09:45
6
7,215 by smlewis
Mon, 2014-04-21 06:47
Normal topic Missing "Bio.PDB" module when running "remove_loop_coords.py"
by lanselibai » Mon, 2014-09-29 04:34
6
9,174 by lanselibai
Wed, 2014-10-01 02:13
Normal topic Problem with hotspot constraints.
by jarek » Wed, 2012-10-17 03:22
6
4,966 by xfliu
Mon, 2014-04-21 06:47
Normal topic protein docking failed
by albumns » Thu, 2012-11-08 02:59
6
5,427 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Cannot get a negative score after relax
by kxiao » Tue, 2014-01-28 22:28
6
7,042 by rmoretti
Mon, 2014-04-21 06:48
Normal topic "sparks failed" error when running "make_fragments.pl"?
by Danielsebas » Tue, 2019-09-03 03:43
6
3,142 by Jacob_Verburgt
Tue, 2020-03-10 14:39
Normal topic Multistate design output
by tong » Wed, 2018-06-20 00:21
6
3,246 by tong
Sun, 2018-06-24 23:30
Normal topic FloppyTail :How to specify range of design(mutation)
by syoifczeri » Mon, 2015-11-02 04:14
6
5,639 by syoifczeri
Sat, 2015-11-07 21:42
Normal topic Distinctions between InterfaceAnalyzer and RosettaScript
by achambe » Wed, 2015-06-17 10:14
6
7,169 by rmoretti
Wed, 2015-09-02 12:43
Normal topic docking in rosetta 3.3
by Ammu » Thu, 2012-03-15 12:03
6
5,289 by smlewis
Mon, 2014-04-21 06:47
Normal topic loop modeling during enzyme design?
by lzx32 » Wed, 2011-11-16 00:30
6
5,120 by lzx32
Mon, 2014-04-21 06:47
Normal topic errors about RIFdocking
by sia » Sun, 2022-07-24 20:45
6
856 by sia
Tue, 2022-08-02 20:08
Normal topic ligand docking, how to combine some silent.out files into a silent_all.out file
by Ryhon Wang » Fri, 2013-12-06 01:53
6
6,417 by rmoretti
Wed, 2017-01-11 12:53
Normal topic How to model missing residues on a protein from multiple PDB files?
by cossio » Fri, 2015-08-21 07:18
6
11,745 by rmoretti
Fri, 2015-09-11 13:27
Normal topic terminal amino acids of gap has incomplete valency
by malkeet.singh » Wed, 2017-11-29 05:20
6
3,563 by rmoretti
Fri, 2017-12-01 12:05
Normal topic How to choose designed antibody
by Sunyp_IM » Wed, 2020-06-24 10:06
6
2,686 by chandana
Tue, 2022-08-09 20:27
Normal topic symmetric design in the presence of a nonsymmetric ligand
by msardejani » Fri, 2016-09-30 15:17
6
5,231 by msardejani
Sat, 2016-10-01 12:55
Normal topic Relax a structure with >1 copy of a modified residue fails [Solved]
by franfdez » Wed, 2012-02-08 00:47
6
5,696 by franfdez
Mon, 2014-04-21 06:47
Normal topic the ddg of mutant is same as the wt
by deepanshuiitb » Wed, 2015-03-04 11:56
6
5,859 by jadolfbr
Tue, 2015-04-07 10:50
Normal topic Enzyme design with variable CST blocks possible?
by petrikigor » Thu, 2011-10-06 11:24
6
6,295 by petrikigor
Mon, 2014-04-21 06:47
Normal topic Loop modeling - the appropriate way to model a peptide insertion?
by xding » Thu, 2018-08-02 15:30
6
3,884 by smlewis
Wed, 2018-08-08 15:48
Normal topic Make error during installation of updated ncbi-blast-2.9.0+-src plus error with nr-database
by Corvin » Tue, 2019-10-01 02:04
6
4,974 by Corvin
Tue, 2019-10-15 01:12
Normal topic Error src/core/scoring/MembraneTopology.cc line: 139
by Daniel Hall » Thu, 2017-07-13 04:58
6
4,745 by rmoretti
Tue, 2017-07-18 09:00
Normal topic CS-HM-Rosetta
by pwurm » Thu, 2013-03-07 12:56
6
6,290 by Marius1987
Fri, 2016-02-05 07:20
Normal topic the flexpepdock refinement and ab-initio
by tfliu » Mon, 2013-12-23 19:17
6
5,644 by tfliu
Mon, 2014-04-21 06:48
Normal topic Translate mover chain X doesnot exist.
by surya » Thu, 2020-07-09 08:36
6
2,460 by rmoretti
Tue, 2020-07-14 10:54
Normal topic Abinitio doesn't run but does not give output or error
by Irving » Fri, 2016-10-28 10:04
6
4,957 by rmoretti
Mon, 2017-01-23 08:52
Normal topic enzyme design and output_matchres_only
by petrikigor » Wed, 2012-10-24 18:45
6
4,527 by petrikigor
Mon, 2014-04-21 06:47
Normal topic running in MPI mode and multiple scores per output PDB file?
by dantimatter » Wed, 2019-10-30 09:42
7
3,972 by dantimatter
Wed, 2019-11-06 09:51
Normal topic How to find cluster core structure?
by assignfit » Thu, 2012-03-29 20:35
7
6,321 by attesor
Wed, 2017-06-14 07:32
Normal topic Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring
by brspurri » Wed, 2017-03-29 13:19
7
5,056 by matteoferla
Mon, 2021-07-19 06:13
Normal topic neutral N-term and C-term
by nawsad » Sun, 2013-06-09 10:20
7
7,961 by helenah
Thu, 2020-10-08 05:29
Normal topic Abinitio Relax Error from -kill_hairpins
by attesor » Tue, 2014-10-28 05:33
7
6,574 by rmoretti
Tue, 2014-11-04 10:28
Normal topic protein structure prediction using relax -- high-powered jobs
by rfieldhouse » Mon, 2011-05-30 18:29
7
6,839 by dimaio
Mon, 2014-04-21 06:47
Normal topic where is pdb2vall.py
by tevang » Thu, 2013-01-24 13:35
7
6,248 by dktest
Mon, 2014-04-21 06:47
Normal topic Inserting residues using RosettaRemodel
by eleishaj » Tue, 2015-11-24 08:54
7
7,168 by eyong123
Wed, 2015-12-09 07:17
Normal topic How to write down a connection between ligand's atom and metal ion from enzyme?
by Corvin » Mon, 2021-02-15 06:54
7
2,287 by aloshbau
Mon, 2021-03-01 20:06
Normal topic suppress pdb output from backrub
by attesor » Mon, 2014-10-27 11:16
7
6,084 by rmoretti
Mon, 2014-11-03 15:47
Normal topic If "clustering.py" can be used for PDBs contain two chains?
by lanselibai » Wed, 2014-11-05 06:05
7
6,173 by lanselibai
Tue, 2014-12-02 09:43
Normal topic Rosetta scoring
by Dimitrov » Thu, 2012-09-20 01:54
7
8,820 by attesor
Mon, 2014-04-21 06:47
Normal topic Ensemble Docking in Rosetta3.5?
by protos_heis » Fri, 2015-05-22 06:42
7
7,475 by protos_heis
Mon, 2015-06-08 07:00
Normal topic segmentation fault after core.kinematics.FoldTree in homology modeling
by pdbb » Mon, 2012-10-08 14:27
7
6,704 by rmoretti
Mon, 2014-04-21 06:47
Normal topic "ddg_monomer.linuxgccrelease" by following "High Resolution Protocol"
by lanselibai » Wed, 2014-10-01 09:54
7
9,696 by lanselibai
Sat, 2015-01-03 08:18
Normal topic ddg_monomer consumes massive RAM
by cossio » Fri, 2018-03-09 17:02
7
5,062 by rmoretti
Mon, 2018-03-19 12:12
Normal topic RosettaRemodel can not work now?
by myputer » Tue, 2013-08-13 16:56
7
6,653 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Write one's own constraint type
by djpittdj » Thu, 2012-11-08 12:29
7
5,851 by smlewis
Mon, 2014-04-21 06:47
Normal topic About scorefunction.
by Run » Mon, 2013-09-09 23:08
7
6,601 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Fragment files for membrane_abinitio application
by sumukh21 » Sun, 2011-02-13 20:34
7
5,933 by yarovoy
Mon, 2014-04-21 06:47
Normal topic variable length fragments for Ab initio
by attesor » Wed, 2015-07-01 06:13
7
6,023 by rmoretti
Tue, 2015-08-18 16:47
Normal topic modeling phosphorylated residue
by rosetter » Fri, 2011-03-18 08:13
7
7,546 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem about energy score
by tfliu » Tue, 2013-11-05 02:09
7
6,862 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic ERROR: Unable to fill in missing atoms.
by mieczyslaw » Tue, 2020-10-20 09:43
7
4,362 by rayyoung
Thu, 2021-11-18 10:13
Normal topic How can I prevent coordinates shift when using "loopmodel.linuxgccrelease"?
by lanselibai » Tue, 2014-11-04 14:56
7
6,721 by lanselibai
Wed, 2014-11-12 11:17
Normal topic SnugDocking a VHH:antigen complex possible?
by David Weis » Thu, 2017-02-16 05:57
7
5,033 by rmoretti
Thu, 2017-07-06 13:00
Normal topic Can rosetta generate a centroid model based on the rna sequence?
by yels » Fri, 2021-03-26 04:06
7
2,029 by yels
Wed, 2021-03-31 18:31
Normal topic H3 modeling takes 10 days more?
by jessye » Fri, 2017-10-27 03:11
7
4,311 by jessye
Fri, 2017-11-03 20:15
Normal topic Converting -patch replonly residues to original sequence
by subha » Mon, 2017-06-26 13:39
8
5,025 by smlewis
Tue, 2017-07-04 15:42
Normal topic Question about running scallo
by danbo » Mon, 2021-11-29 23:25
8
1,951 by danbo
Wed, 2021-12-22 23:51
Normal topic Why do non proten ligands get a very high score in kinematic loop modeling/ in general?
by a_s_a » Wed, 2011-06-15 00:03
8
6,939 by a_s_a
Mon, 2014-04-21 06:47
Normal topic Multistate design on Rosetta - no generations produced
by tong » Wed, 2018-06-13 00:36
8
4,350 by smlewis
Thu, 2018-06-14 10:26
Normal topic InterfaceAnalyzer:“too many tries in fill_missing_atoms!”
by mxp » Tue, 2019-08-06 00:41
8
4,837 by mxp
Mon, 2019-08-12 18:42
Normal topic fixbb design using damped LJ
by Anonymous » Fri, 2012-08-17 03:51
8
6,982 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Syntax to build a silent file
by lanselibai » Fri, 2014-09-26 09:13
8
8,649 by lanselibai
Tue, 2014-09-30 03:45
Normal topic [SOLVED]core.io.silent: [ WARNING ] ...
by fred » Wed, 2011-10-05 07:38
8
6,944 by fred
Mon, 2014-04-21 06:47
Normal topic Noncanonical amino acids
by wsgosal » Tue, 2014-03-18 05:29
8
5,951 by e3lm
Thu, 2022-05-26 12:51
Normal topic demo of molecular replacement with rosetta (mr_rosetta)
by wenchangyu2008 » Sun, 2011-03-20 05:23
8
9,988 by astrofunk12
Mon, 2014-04-21 06:47
Normal topic SnugDock - What protocol should I use?
by dfcoelho » Tue, 2018-11-27 07:32
8
5,775 by dfcoelho
Wed, 2018-11-28 08:07
Normal topic Fold tree C->N: RosettaScripts
by aroop » Wed, 2013-02-13 10:31
8
7,044 by smlewis
Mon, 2014-04-21 06:47
Normal topic to create the template pdb file
by benniu2004 » Sat, 2012-12-29 23:04
8
7,661 by benniu2004
Mon, 2014-04-21 06:47
Normal topic Adding bridged water interaction in constraint file
by purvi24 » Thu, 2019-02-28 07:01
8
4,100 by purvi24
Mon, 2019-03-11 06:43
Normal topic Problems with Ligand Docking
by saxen » Fri, 2011-08-19 00:19
8
7,795 by glemmon
Mon, 2014-04-21 06:47
Normal topic Symmetry Docking and Clustering with Ligands
by skovacs » Wed, 2012-03-07 16:46
9
10,555 by Anonymous
Mon, 2014-04-21 06:47
Normal topic how to fix the ATP HETATM by using movemap or constraint file?
by ziqi1234 » Mon, 2017-11-20 06:43
9
5,546 by ziqi1234
Wed, 2017-11-22 06:21
Normal topic Including waters in RosettaCM
by ajkal » Thu, 2017-04-27 11:59
9
6,447 by rpavlov
Tue, 2017-06-06 11:45
Normal topic ORBITAL records in self generated .params (ligands)
by ast » Thu, 2014-03-06 07:22
9
7,999 by ast
Thu, 2014-03-13 07:17
Normal topic ab initio membrane error (frag9 file...)
by almeida » Mon, 2012-07-30 08:53
9
8,426 by rmoretti
Tue, 2014-08-12 08:15
Normal topic Ab-initio peptide-protein docking
by suhail » Sun, 2013-06-23 16:20
9
10,777 by rmoretti
Fri, 2016-04-29 08:57
Normal topic cryptic error message from remodel in rosetta_scripts
by petrikigor » Mon, 2012-12-03 15:13
9
7,503 by petrikigor
Mon, 2014-04-21 06:47
Normal topic RAbD with N-term,Proline-like ncaa returns segmentation fault during CCDEndsGraftMover
by CordycepsLin » Sun, 2022-02-06 19:09
9
1,860 by CordycepsLin
Wed, 2022-02-09 19:39
Normal topic Runnig Abinitio & score app
by Gaurav_kumar » Wed, 2011-11-23 20:45
9
10,493 by rmoretti
Mon, 2014-04-21 06:47
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