You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
| Topic / Topic starter |
Replies |
Views | Last post | |
|---|---|---|---|---|
|
Line search failed even after resetting Hessian by Loki01 » Wed, 2017-12-13 16:52 |
6 |
4,237 |
by Loki01 Thu, 2018-02-15 13:54 |
|
|
Noncanonical amino acids by wsgosal » Tue, 2014-03-18 05:29 |
7 |
4,689 |
by matteoferla Tue, 2022-05-03 00:12 |
|
|
How to find cluster core structure? by assignfit » Thu, 2012-03-29 20:35 |
7 |
5,691 |
by attesor Wed, 2017-06-14 07:32 |
|
|
suppress pdb output from backrub by attesor » Mon, 2014-10-27 11:16 |
7 |
5,394 |
by rmoretti Mon, 2014-11-03 15:47 |
|
|
If "clustering.py" can be used for PDBs contain two chains? by lanselibai » Wed, 2014-11-05 06:05 |
7 |
5,517 |
by lanselibai Tue, 2014-12-02 09:43 |
|
|
Ensemble Docking in Rosetta3.5? by protos_heis » Fri, 2015-05-22 06:42 |
7 |
6,734 |
by protos_heis Mon, 2015-06-08 07:00 |
|
|
"ddg_monomer.linuxgccrelease" by following "High Resolution Protocol" by lanselibai » Wed, 2014-10-01 09:54 |
7 |
8,844 |
by lanselibai Sat, 2015-01-03 08:18 |
|
|
ddg_monomer consumes massive RAM by cossio » Fri, 2018-03-09 17:02 |
7 |
4,216 |
by rmoretti Mon, 2018-03-19 12:12 |
|
|
protein structure prediction using relax -- high-powered jobs by rfieldhouse » Mon, 2011-05-30 18:29 |
7 |
6,262 |
by dimaio Mon, 2014-04-21 06:47 |
|
|
Write one's own constraint type by djpittdj » Thu, 2012-11-08 12:29 |
7 |
5,310 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
RosettaRemodel can not work now? by myputer » Tue, 2013-08-13 16:56 |
7 |
6,097 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
About scorefunction. by Run » Mon, 2013-09-09 23:08 |
7 |
5,967 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
variable length fragments for Ab initio by attesor » Wed, 2015-07-01 06:13 |
7 |
5,413 |
by rmoretti Tue, 2015-08-18 16:47 |
|
|
Problem about energy score by tfliu » Tue, 2013-11-05 02:09 |
7 |
6,219 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
|
|
How can I prevent coordinates shift when using "loopmodel.linuxgccrelease"? by lanselibai » Tue, 2014-11-04 14:56 |
7 |
6,035 |
by lanselibai Wed, 2014-11-12 11:17 |
|
|
ERROR: Unable to fill in missing atoms. by mieczyslaw » Tue, 2020-10-20 09:43 |
7 |
2,845 |
by rayyoung Thu, 2021-11-18 10:13 |
|
|
SnugDocking a VHH:antigen complex possible? by David Weis » Thu, 2017-02-16 05:57 |
7 |
4,432 |
by rmoretti Thu, 2017-07-06 13:00 |
|
|
Can rosetta generate a centroid model based on the rna sequence? by yels » Fri, 2021-03-26 04:06 |
7 |
1,374 |
by yels Wed, 2021-03-31 18:31 |
|
|
H3 modeling takes 10 days more? by jessye » Fri, 2017-10-27 03:11 |
7 |
3,714 |
by jessye Fri, 2017-11-03 20:15 |
|
|
running in MPI mode and multiple scores per output PDB file? by dantimatter » Wed, 2019-10-30 09:42 |
7 |
3,154 |
by dantimatter Wed, 2019-11-06 09:51 |
|
|
Rosetta scoring by Dimitrov » Thu, 2012-09-20 01:54 |
7 |
8,148 |
by attesor Mon, 2014-04-21 06:47 |
|
|
segmentation fault after core.kinematics.FoldTree in homology modeling by pdbb » Mon, 2012-10-08 14:27 |
7 |
6,200 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring by brspurri » Wed, 2017-03-29 13:19 |
7 |
4,051 |
by matteoferla Mon, 2021-07-19 06:13 |
|
|
neutral N-term and C-term by nawsad » Sun, 2013-06-09 10:20 |
7 |
7,277 |
by helenah Thu, 2020-10-08 05:29 |
|
|
Fragment files for membrane_abinitio application by sumukh21 » Sun, 2011-02-13 20:34 |
7 |
5,293 |
by yarovoy Mon, 2014-04-21 06:47 |
|
|
modeling phosphorylated residue by rosetter » Fri, 2011-03-18 08:13 |
7 |
6,877 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Abinitio Relax Error from -kill_hairpins by attesor » Tue, 2014-10-28 05:33 |
7 |
5,915 |
by rmoretti Tue, 2014-11-04 10:28 |
|
|
where is pdb2vall.py by tevang » Thu, 2013-01-24 13:35 |
7 |
5,712 |
by dktest Mon, 2014-04-21 06:47 |
|
|
Inserting residues using RosettaRemodel by eleishaj » Tue, 2015-11-24 08:54 |
7 |
6,491 |
by eyong123 Wed, 2015-12-09 07:17 |
|
|
How to write down a connection between ligand's atom and metal ion from enzyme? by Corvin » Mon, 2021-02-15 06:54 |
7 |
1,610 |
by aloshbau Mon, 2021-03-01 20:06 |
|
|
Why do non proten ligands get a very high score in kinematic loop modeling/ in general? by a_s_a » Wed, 2011-06-15 00:03 |
8 |
6,242 |
by a_s_a Mon, 2014-04-21 06:47 |
|
|
SnugDock - What protocol should I use? by dfcoelho » Tue, 2018-11-27 07:32 |
8 |
4,576 |
by dfcoelho Wed, 2018-11-28 08:07 |
|
|
Fold tree C->N: RosettaScripts by aroop » Wed, 2013-02-13 10:31 |
8 |
6,431 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
fixbb design using damped LJ by Anonymous » Fri, 2012-08-17 03:51 |
8 |
6,406 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
[SOLVED]core.io.silent: [ WARNING ] ... by fred » Wed, 2011-10-05 07:38 |
8 |
6,231 |
by fred Mon, 2014-04-21 06:47 |
|
|
to create the template pdb file by benniu2004 » Sat, 2012-12-29 23:04 |
8 |
6,845 |
by benniu2004 Mon, 2014-04-21 06:47 |
|
|
Adding bridged water interaction in constraint file by purvi24 » Thu, 2019-02-28 07:01 |
8 |
3,247 |
by purvi24 Mon, 2019-03-11 06:43 |
|
|
demo of molecular replacement with rosetta (mr_rosetta) by wenchangyu2008 » Sun, 2011-03-20 05:23 |
8 |
9,254 |
by astrofunk12 Mon, 2014-04-21 06:47 |
|
|
Converting -patch replonly residues to original sequence by subha » Mon, 2017-06-26 13:39 |
8 |
4,360 |
by smlewis Tue, 2017-07-04 15:42 |
|
|
Question about running scallo by danbo » Mon, 2021-11-29 23:25 |
8 |
735 |
by danbo Wed, 2021-12-22 23:51 |
|
|
Multistate design on Rosetta - no generations produced by tong » Wed, 2018-06-13 00:36 |
8 |
3,695 |
by smlewis Thu, 2018-06-14 10:26 |
|
|
InterfaceAnalyzer：“too many tries in fill_missing_atoms!” by mxp » Tue, 2019-08-06 00:41 |
8 |
3,727 |
by mxp Mon, 2019-08-12 18:42 |
|
|
Problems with Ligand Docking by saxen » Fri, 2011-08-19 00:19 |
8 |
7,151 |
by glemmon Mon, 2014-04-21 06:47 |
|
|
Syntax to build a silent file by lanselibai » Fri, 2014-09-26 09:13 |
8 |
7,960 |
by lanselibai Tue, 2014-09-30 03:45 |
|
|
cryptic error message from remodel in rosetta_scripts by petrikigor » Mon, 2012-12-03 15:13 |
9 |
6,818 |
by petrikigor Mon, 2014-04-21 06:47 |
|
|
RAbD with N-term，Proline-like ncaa returns segmentation fault during CCDEndsGraftMover by CordycepsLin » Sun, 2022-02-06 19:09 |
9 |
595 |
by CordycepsLin Wed, 2022-02-09 19:39 |
|
|
loop re-modeling std::out_of_range by rlwoltz » Tue, 2013-03-12 18:11 |
9 |
6,923 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Symmetry Docking and Clustering with Ligands by skovacs » Wed, 2012-03-07 16:46 |
9 |
9,871 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
ab initio membrane error (frag9 file...) by almeida » Mon, 2012-07-30 08:53 |
9 |
7,684 |
by rmoretti Tue, 2014-08-12 08:15 |
|
|
Runnig Abinitio & score app by Gaurav_kumar » Wed, 2011-11-23 20:45 |
9 |
9,758 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
problems in InterfaceAnalyzer analysis by chenchaozhao » Fri, 2011-12-02 23:36 |
9 |
6,767 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
how to fix the ATP HETATM by using movemap or constraint file? by ziqi1234 » Mon, 2017-11-20 06:43 |
9 |
4,685 |
by ziqi1234 Wed, 2017-11-22 06:21 |
|
|
fix the left part doesn't work by albumns » Wed, 2012-11-07 00:02 |
9 |
5,477 |
by albumns Mon, 2014-04-21 06:47 |
|
|
Including waters in RosettaCM by ajkal » Thu, 2017-04-27 11:59 |
9 |
5,664 |
by rpavlov Tue, 2017-06-06 11:45 |
|
|
RosettaDock - Constraints File by edpryor » Wed, 2012-09-19 06:23 |
9 |
10,345 |
by joeg Mon, 2014-04-21 06:47 |
|
|
ORBITAL records in self generated .params (ligands) by ast » Thu, 2014-03-06 07:22 |
9 |
7,218 |
by ast Thu, 2014-03-13 07:17 |
|
|
Ab-initio peptide-protein docking by suhail » Sun, 2013-06-23 16:20 |
9 |
9,957 |
by rmoretti Fri, 2016-04-29 08:57 |
|
|
SEWING and motif file generation by rbjacob » Thu, 2018-07-12 07:28 |
10 |
4,387 |
by zhangying1990 Tue, 2019-06-04 18:04 |
|
|
std::bad_alloc error after changing .xml script? by chrisHKL » Wed, 2020-03-04 11:44 |
10 |
3,197 |
by jadolfbr Thu, 2020-03-05 07:02 |
|
|
A problem with "molfile_to_params.py" by Rosettasz » Mon, 2013-08-19 19:35 |
10 |
8,732 |
by egecav Mon, 2021-01-18 05:41 |
|
|
RosettaDNA error by deltag » Fri, 2012-12-07 06:09 |
10 |
7,745 |
by deltag Mon, 2014-04-21 06:47 |
|
|
Don't know how to extract scores from a RNA de novo silent file. by Basantab » Wed, 2011-11-23 17:27 |
10 |
7,985 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Questions for "modeling_instructions.pdf" in "Homology or Loop Modelling" by lanselibai » Sun, 2014-09-21 09:02 |
10 |
8,782 |
by lanselibai Tue, 2014-10-07 02:58 |
|
|
how to repacking loop while freezing other residues? by jfhuang » Wed, 2012-07-25 06:59 |
10 |
7,046 |
by jfhuang Mon, 2014-04-21 06:47 |
|
|
fixing disulfides in homolgy modeling by pdbb » Wed, 2013-02-13 11:43 |
10 |
9,699 |
by kamau Mon, 2014-09-22 09:39 |
|
|
Abinitio error: ERROR: Value of inactive option accessed: -in:file:frag9 by rlwoltz » Tue, 2012-09-18 14:04 |
11 |
13,025 |
by RAGHURAMAN Fri, 2014-08-08 02:19 |
|
|
Should FastRelax be commented out in Calculate_protein_protein_ddg demo? by cossio » Mon, 2016-10-31 12:01 |
11 |
7,112 |
by cossio Mon, 2016-11-21 07:56 |
|
|
in silico affinity maturation design by jarod » Mon, 2013-05-20 02:07 |
11 |
10,175 |
by jarod Mon, 2014-04-21 06:47 |
|
|
fragment_picker.mpi.linuxgccrelease can't find : libsqlite3.so by starone » Mon, 2016-06-20 19:22 |
11 |
9,933 |
by starone Fri, 2016-06-24 18:29 |
|
|
Rosetta-Holes Scoring Function by kroberts » Fri, 2011-05-13 14:05 |
11 |
11,994 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Where is the RosettaHoles2 executable? by lah435 » Mon, 2012-06-04 15:15 |
11 |
6,792 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
No output pdb files after docking protein and DNA/RNA by yzq » Thu, 2012-10-25 08:23 |
11 |
9,587 |
by rmoretti Fri, 2016-06-17 10:22 |
|
|
ddg_monomer problem by deltag » Wed, 2012-04-04 07:53 |
11 |
9,729 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How to use -cst_fa_file and -relax:constrain_relax_to_native_coords at the same time by Anatol » Thu, 2012-11-29 14:12 |
11 |
8,571 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Error while running Enzyme Design by saxen » Fri, 2011-10-21 15:46 |
11 |
8,683 |
by akpole Mon, 2014-04-21 06:47 |
|
|
-kill_hairpin error by jadolfbr » Wed, 2011-10-05 18:53 |
11 |
13,601 |
by rmoretti Mon, 2015-09-28 15:00 |
|
|
Surface Docking Application Crash by dkozuch » Sat, 2017-09-02 18:32 |
12 |
6,111 |
by Anpu Tue, 2018-09-25 19:06 |
|
|
the extracted pdb file by benniu2004 » Fri, 2013-01-04 17:55 |
12 |
11,214 |
by benniu2004 Mon, 2014-04-21 06:47 |
|
|
AbinitioRelax usage (3.4) by atruong » Fri, 2012-10-12 13:38 |
12 |
8,637 |
by atruong Mon, 2014-04-21 06:47 |
|
|
"score vs RMSD plots" & "cluster models" by lanselibai » Thu, 2014-09-25 06:51 |
12 |
19,482 |
by lanselibai Wed, 2014-10-15 01:54 |
|
|
Segmentation fault (core dumped) in rosetta_scripts.default.linuxgccrelease after blueprint file reading by Corvin » Tue, 2020-06-30 00:36 |
12 |
4,658 |
by Corvin Tue, 2020-11-10 01:22 |
|
|
fragment picker does not follow dihedral constraints by attesor » Tue, 2016-05-24 23:22 |
12 |
8,322 |
by smlewis Wed, 2016-08-17 07:56 |
|
|
Scoring residue vs. organic ligand by almeida » Tue, 2014-04-08 12:18 |
12 |
11,200 |
by rmoretti Thu, 2014-04-24 14:43 |
|
|
Camelid antibody (VHH) modelling by Ayoub Ksouri » Tue, 2017-04-04 22:52 |
13 |
7,748 |
by Ayoub Ksouri Wed, 2017-04-19 15:16 |
|
|
ddg_monomer mutations list: How to specify chain ID? by cossio » Tue, 2014-12-09 14:26 |
13 |
12,521 |
by rmoretti Thu, 2016-04-28 16:43 |
|
|
[SOLVED] swamped memory by fred » Fri, 2011-09-16 08:19 |
13 |
9,470 |
by fred Mon, 2014-04-21 06:47 |
|
|
Problems when running Rosetta VIP with cofactors by Basantab » Fri, 2013-04-26 13:31 |
14 |
12,291 |
by Basantab Mon, 2014-04-21 06:47 |
|
|
About loophash and batchrelax. by Run » Mon, 2013-07-22 23:54 |
14 |
10,359 |
by Run Mon, 2014-04-21 06:48 |
|
|
Fastsaxs by Pernille » Mon, 2013-07-22 07:29 |
14 |
34,150 |
by rmoretti Mon, 2021-06-14 12:56 |
|
|
loop_length_changing by lanselibai » Tue, 2014-10-14 04:10 |
14 |
10,738 |
by lanselibai Fri, 2014-11-07 02:06 |
|
|
CoupledMoves not altering backbone coordinates? by amorin » Wed, 2021-01-20 11:38 |
15 |
3,182 |
by amorin Sat, 2021-02-27 20:29 |
|
|
membrane scoring function performance by tevang » Wed, 2013-03-20 08:40 |
15 |
12,385 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Errors in Getting Erraser to run by belousoff » Thu, 2017-06-01 16:13 |
15 |
8,589 |
by belousoff Mon, 2017-06-26 16:46 |
|
|
Folppy Tail and Constraints by sfulad2 » Fri, 2017-05-12 12:23 |
15 |
7,089 |
by smlewis Fri, 2017-09-08 09:16 |
|
|
usage of score3 by Run » Sat, 2013-09-28 02:06 |
16 |
13,932 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
|
A problem with RosettaLigand by Rosettasz » Fri, 2013-07-19 16:09 |
16 |
15,417 |
by Rosettasz Mon, 2014-04-21 06:48 |
|
|
FloppyTail bugs for N-terminal tails by Dave C » Thu, 2012-03-01 13:06 |
18 |
12,749 |
by bbarryabc Mon, 2014-04-21 06:47 |
|
|
Run AbinitioRelax (rosetta 3.3) on cluster by grisha » Mon, 2011-12-12 14:20 |
18 |
14,301 |
by grisha Mon, 2014-04-21 06:47 |
|
|
Fixbb Multiple Resfiles by protos_heis » Mon, 2012-10-15 10:34 |
18 |
11,991 |
by protos_heis Mon, 2014-04-21 06:47 |
|
|
Syntax for relax.linuxgccrelease by lanselibai » Wed, 2014-09-24 04:34 |
18 |
19,403 |
by lanselibai Tue, 2014-12-02 09:46 |
Log in to post new content in the forum.
