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Rosetta 3 - Applications

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Normal topic matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302
by siciliu » Fri, 2014-03-21 17:51
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6,500 by siciliu
Thu, 2014-04-10 09:50
Normal topic ddg_monomer conformational search...
by yperez » Wed, 2012-05-09 11:10
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5,166 by yperez
Mon, 2014-04-21 06:47
Normal topic RosettaMP: issue with generating .lips4 file
by ksy141 » Mon, 2019-01-21 17:17
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3,695 by noahC_noahDo
Fri, 2020-11-20 11:29
Normal topic How do you use two patches simulataneously with ab initio folding?
by smiruthi » Wed, 2011-12-21 15:24
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5,566 by wangyr
Mon, 2014-04-21 06:47
Normal topic a question about ligand docking
by yzhou » Wed, 2012-05-30 18:57
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5,132 by yzhou
Mon, 2014-04-21 06:47
Normal topic pair energies across interface
by irini » Fri, 2012-02-10 09:17
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5,200 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Antibody protocol: unusual antibodies, and chainbreaks
by Cyril Cros » Mon, 2014-07-21 17:03
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6,495 by Cyril Cros
Tue, 2014-11-25 08:21
Normal topic Over-docking with FlexPepDock
by gw » Fri, 2012-07-20 13:10
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5,840 by rmoretti
Mon, 2014-04-21 06:47
Normal topic molfile to params polymer python errors
by tsztain » Sun, 2018-12-02 15:38
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5,299 by tsztain
Tue, 2018-12-11 13:41
Normal topic -score_app:linmin flag not working
by fglaser » Tue, 2011-03-01 06:04
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5,779 by smlewis
Mon, 2014-04-21 06:47
Normal topic symmetrical membrane modeling
by rlwoltz » Tue, 2013-10-29 03:41
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6,239 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else?
by dantimatter » Wed, 2019-10-16 14:59
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3,588 by dantimatter
Wed, 2019-10-30 09:43
Normal topic Docking flags
by AmelieH » Thu, 2014-11-13 08:46
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5,527 by AmelieH
Wed, 2014-11-19 11:26
Normal topic modeling an extracellular loop of a transmembrane protein
by Hothman » Fri, 2016-08-12 06:16
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4,983 by rmoretti
Mon, 2016-09-05 10:59
Normal topic How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure?
by Sunyp_IM » Sun, 2020-11-08 08:07
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3,320 by Brahm Yachnin
Wed, 2020-11-18 17:21
Normal topic Pmut_scan with symmetry
by felipet » Thu, 2015-02-05 08:53
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6,063 by felipet
Wed, 2015-02-11 05:13
Normal topic Rosetta residue design for DNA binding
by deltag » Wed, 2012-12-12 11:35
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9,336 by deltag
Mon, 2014-04-21 06:47
Normal topic RosettaAntibodyDesign: How can I run the protocol without allowing design?
by brspurri » Tue, 2020-05-26 08:12
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3,117 by brspurri
Wed, 2020-06-03 13:20
Normal topic Conformers in EnzDes
by JorickF » Fri, 2015-03-06 04:41
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7,364 by rmoretti
Tue, 2015-03-31 08:56
Normal topic How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"?
by lanselibai » Mon, 2014-10-13 10:26
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5,765 by lanselibai
Wed, 2014-10-15 03:52
Normal topic Rna Denovo
by helderveras » Wed, 2020-05-06 08:40
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3,238 by everyday847
Wed, 2020-05-20 08:52
Normal topic RosettaCM Tutorials
by smathersc » Wed, 2017-01-11 15:59
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4,992 by rmoretti
Thu, 2017-01-19 09:11
Normal topic relax.linuxgccrelease in multiple processors
by jpfuenzalidawx » Thu, 2021-01-14 14:07
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3,192 by jadolfbr
Fri, 2021-01-15 08:06
Normal topic P-P docking with suitable constraint type
by Yao Wu » Tue, 2012-11-13 18:03
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7,196 by rmoretti
Mon, 2014-04-21 06:47
Normal topic how to find help informations on rosetta_scripts in rosetta3.10
by xinmiaohe » Mon, 2019-08-26 14:48
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3,333 by xinmiaohe
Tue, 2019-08-27 08:37
Normal topic Error during single state design
by sujigeorge1979 » Sat, 2020-01-18 00:37
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5,462 by rmoretti
Thu, 2020-01-30 15:42
Normal topic docking energies - deltadeltaG calculation
by ast » Fri, 2013-07-19 07:30
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10,046 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Using MoveMap within Relax Application?
by m_grisewood » Mon, 2012-08-13 12:21
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7,374 by m_grisewood
Mon, 2014-04-21 06:47
Normal topic extract silent error - tag mismatch
by shrutikhare » Thu, 2014-04-03 00:13
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7,162 by rmoretti
Mon, 2014-04-21 10:47
Normal topic Error with the mpi version of simple_cycpep_predict
by Florent Langenfeld » Wed, 2020-02-05 05:16
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3,396 by vmulligan
Fri, 2020-04-10 02:54
Normal topic Rosetta RNA denovo huge memory usage (probable memory leak)
by cdegut » Mon, 2017-10-30 16:41
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4,488 by cdegut
Fri, 2017-11-03 05:50
Normal topic Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress)
by Danielsebas » Mon, 2019-09-23 03:24
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3,390 by smlewis
Mon, 2019-09-23 11:42
Normal topic rosetta protein protein docking start up
by vk » Fri, 2011-06-24 09:01
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7,303 by smlewis
Mon, 2014-04-21 06:47
Normal topic Snugdock_input
by luicui » Wed, 2017-01-18 16:48
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4,576 by smlewis
Fri, 2017-01-20 08:14
Normal topic Ligand Docking with Rosetta Scripts memory problem
by Swillard » Thu, 2017-08-17 14:59
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5,083 by rmoretti
Mon, 2018-11-12 14:31
Normal topic RosettaCM -weights, fragments and relax
by jsv » Tue, 2017-05-09 10:20
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5,212 by rmoretti
Thu, 2017-06-01 08:52
Normal topic symmetric docking and constraints
by ytao » Thu, 2013-05-02 12:08
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7,890 by attesor
Wed, 2015-10-21 13:53
Normal topic cyclization_type flag in simple_cycpep_predict
by Florent Langenfeld » Thu, 2018-01-04 09:22
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4,919 by Florent Langenfeld
Tue, 2018-03-27 11:44
Normal topic Does linker modeling exist?
by aroop » Wed, 2012-02-22 07:34
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5,528 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cartesian-space refinement
by sjyang7 » Wed, 2017-05-31 19:34
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5,895 by sjyang7
Sat, 2017-06-03 06:09
Normal topic Enzdes: increase weight of energy term for steric clashes with ligand
by eyong123 » Wed, 2015-03-25 09:12
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6,300 by rmoretti
Fri, 2015-04-24 12:02
Normal topic RosettaVIP: ERROR: seqpos <= size()
by Anonymous » Thu, 2012-07-26 07:30
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6,783 by Anonymous
Mon, 2014-04-21 06:47
Normal topic RosettaLigand: How to score native pose in protein-ligand docking experiment?
by Ryhon Wang » Tue, 2015-11-10 01:30
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5,982 by Ryhon Wang
Mon, 2016-01-04 19:59
Normal topic Rosetta ScriptsFeatures Reporter issue
by David Weis » Sun, 2017-03-12 08:19
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4,893 by David Weis
Mon, 2017-03-13 10:59
Normal topic Memory Leak: Relax Density MPI RAM overusage kills process
by mmfarrugia » Sun, 2023-12-31 12:02
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779 by mmfarrugia
Fri, 2024-01-12 10:35
Normal topic domain:domain fusion
by felipet » Thu, 2017-06-15 13:13
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5,724 by felipet
Fri, 2017-06-16 11:42
Normal topic Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans?
by ccottrell » Tue, 2020-05-05 20:30
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3,146 by jadolfbr
Wed, 2020-05-06 11:37
Normal topic PDB format for RosettaDNA
by brspurri » Thu, 2013-05-30 11:21
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6,634 by brspurri
Mon, 2014-04-21 06:47
Normal topic ddg dG_separate
by gw » Wed, 2012-08-22 11:25
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6,391 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaScripts LinkResidues
by Yero » Fri, 2019-05-17 05:26
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4,390 by Yero
Thu, 2019-07-18 01:39
Normal topic Parse error while reading in XML file in ROSETTA Scripts
by rweisse » Fri, 2014-08-29 03:24
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9,706 by a-eatemadi@razi...
Sun, 2017-08-06 03:49
Normal topic Rosetta dock irmsd
by Pernille » Sun, 2015-04-26 13:51
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7,208 by rmoretti
Mon, 2015-10-12 15:10
Normal topic snugdock(sequence position requested was greater than the number of residues in the pose)
by lei » Thu, 2023-01-12 01:40
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2,842 by lei
Fri, 2023-01-20 08:11
Normal topic extract_pdb application parse error with silent file
by staciekim » Tue, 2017-08-22 12:39
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6,044 by rmoretti
Thu, 2017-08-24 08:19
Normal topic flexpep docking problem
by michael_luntan » Mon, 2011-04-18 17:15
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5,889 by michael_luntan
Mon, 2014-04-21 06:47
Normal topic Local docking: "manually place the two proteins facing each other" ?
by mdeklotz » Fri, 2018-07-20 10:24
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5,006 by dfcoelho
Tue, 2018-10-16 09:05
Normal topic conway2016 correction on beta-nov15?
by attesor » Wed, 2017-03-15 05:26
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4,638 by attesor
Thu, 2017-03-16 01:21
Normal topic How to concatenate the 3-mer and 9-mer files for RosettaCM?
by lanselibai » Fri, 2020-05-08 05:38
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3,511 by danpf
Tue, 2020-05-12 10:58
Normal topic Scoring functions: talaris2013 incompatible versions
by Smbat » Tue, 2020-10-13 06:18
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3,339 by Astghik
Thu, 2020-10-15 00:48
Normal topic too many constraints result in no output pose
by Yao Wu » Sun, 2012-11-18 23:45
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6,305 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to do alanine scanning
by xinmiaohe » Mon, 2019-08-26 17:40
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5,426 by xinmiaohe
Fri, 2019-10-04 08:54
Normal topic Is there a way to restrict memory usage of ddg_monomer?
by cossio » Fri, 2015-01-30 14:35
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5,390 by rmoretti
Mon, 2015-02-09 12:04
Normal topic rna structure prediction
by cbala » Thu, 2011-04-14 07:42
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6,067 by mkoohim
Mon, 2014-04-21 06:47
Normal topic [TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed
by tevang » Wed, 2013-04-10 15:07
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5,048 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Steric clashes in RNA minimization
by brianmlee » Tue, 2014-11-18 18:29
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6,341 by brianmlee
Mon, 2014-11-24 19:40
Normal topic ab initio protein prediction using homologs
by justin » Mon, 2012-02-13 07:52
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5,953 by justin
Mon, 2014-04-21 06:47
Normal topic How to minimize the decoys obtained from backrub?
by Vedasheersh » Wed, 2017-06-14 10:26
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4,432 by SenyorDrew
Fri, 2017-06-30 09:47
Normal topic rosetta app
by MA » Wed, 2017-07-05 06:52
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4,257 by smlewis
Tue, 2017-07-11 07:53
Normal topic trRosetta protocol Segmentation Fault
by nc-ring » Wed, 2021-04-28 11:57
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2,941 by nc-ring
Tue, 2021-05-04 12:26
Normal topic ab inito memberane(error in alignblast.pl)
by kingljy » Tue, 2011-05-03 23:41
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7,318 by karthishanmugam
Mon, 2014-04-21 06:47
Normal topic Problems with ligand when running RosettaLigand
by Cat » Mon, 2013-05-20 15:58
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7,301 by Aben
Tue, 2023-04-18 01:31
Normal topic Results of enzyme_design not consistent with Resfile
by yogeshkd » Thu, 2013-02-14 15:56
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6,767 by yogeshkd
Mon, 2014-04-21 06:47
Normal topic Rotamers used in fixbb
by lanselibai » Thu, 2014-11-06 02:47
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6,339 by lanselibai
Tue, 2014-11-11 15:28
Normal topic Help with enzyme design
by lzx32 » Fri, 2011-04-08 22:29
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6,778 by lzx32
Mon, 2014-04-21 06:47
Normal topic rosetta_2013wk52: make_fragments.pl failed
by fred » Thu, 2014-01-30 12:41
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8,826 by rmoretti
Fri, 2014-02-07 08:01
Normal topic scoring of beta sandwich protein
by attesor » Mon, 2014-11-17 08:24
6
6,298 by rmoretti
Thu, 2014-11-20 10:46
Normal topic Line search failed even after resetting Hessian
by Loki01 » Wed, 2017-12-13 16:52
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6,250 by Loki01
Thu, 2018-02-15 13:54
Normal topic Incorrect Jump being set in RosettaScripts docking mover
by weehee » Fri, 2012-06-08 10:23
6
7,864 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Is Biopython required to run pdb_renumber.py?
by ljjjxay » Wed, 2023-11-22 20:00
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1,036 by ljjjxay
Wed, 2023-12-06 19:24
Normal topic Missing "Bio.PDB" module when running "remove_loop_coords.py"
by lanselibai » Mon, 2014-09-29 04:34
6
10,520 by lanselibai
Wed, 2014-10-01 02:13
Normal topic mover "RepackMinimize" does not support chains > 2?
by jarod » Mon, 2013-05-20 02:17
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7,704 by jarod
Mon, 2014-04-21 06:47
Normal topic Comparative modeling stops with "no more batches to process... " / no output
by eskici » Tue, 2012-08-28 12:13
6
6,504 by eskici
Mon, 2014-04-21 06:47
Normal topic Abinitio (3.4) Error: no fragment to compute secondary structure
by skovacs » Tue, 2012-09-18 13:49
6
7,823 by skovacs
Mon, 2014-04-21 06:47
Normal topic Docking with constraints
by ytao » Tue, 2013-04-02 09:45
6
8,191 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cannot get a negative score after relax
by kxiao » Tue, 2014-01-28 22:28
6
8,037 by rmoretti
Mon, 2014-04-21 06:48
Normal topic "sparks failed" error when running "make_fragments.pl"?
by Danielsebas » Tue, 2019-09-03 03:43
6
4,331 by Jacob_Verburgt
Tue, 2020-03-10 14:39
Normal topic Multistate design output
by tong » Wed, 2018-06-20 00:21
6
4,338 by tong
Sun, 2018-06-24 23:30
Normal topic FloppyTail :How to specify range of design(mutation)
by syoifczeri » Mon, 2015-11-02 04:14
6
6,701 by syoifczeri
Sat, 2015-11-07 21:42
Normal topic Distinctions between InterfaceAnalyzer and RosettaScript
by achambe » Wed, 2015-06-17 10:14
6
8,783 by rmoretti
Wed, 2015-09-02 12:43
Normal topic Problem with hotspot constraints.
by jarek » Wed, 2012-10-17 03:22
6
6,033 by xfliu
Mon, 2014-04-21 06:47
Normal topic protein docking failed
by albumns » Thu, 2012-11-08 02:59
6
6,381 by rmoretti
Mon, 2014-04-21 06:47
Normal topic loop modeling during enzyme design?
by lzx32 » Wed, 2011-11-16 00:30
6
6,225 by lzx32
Mon, 2014-04-21 06:47
Normal topic ligand docking, how to combine some silent.out files into a silent_all.out file
by Ryhon Wang » Fri, 2013-12-06 01:53
6
7,542 by rmoretti
Wed, 2017-01-11 12:53
Normal topic How to model missing residues on a protein from multiple PDB files?
by cossio » Fri, 2015-08-21 07:18
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13,613 by rmoretti
Fri, 2015-09-11 13:27
Normal topic terminal amino acids of gap has incomplete valency
by malkeet.singh » Wed, 2017-11-29 05:20
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4,730 by rmoretti
Fri, 2017-12-01 12:05
Normal topic How to choose designed antibody
by Sunyp_IM » Wed, 2020-06-24 10:06
6
4,445 by chandana
Tue, 2022-08-09 20:27
Normal topic symmetric design in the presence of a nonsymmetric ligand
by msardejani » Fri, 2016-09-30 15:17
6
6,430 by msardejani
Sat, 2016-10-01 12:55
Normal topic the ddg of mutant is same as the wt
by deepanshuiitb » Wed, 2015-03-04 11:56
6
6,935 by jadolfbr
Tue, 2015-04-07 10:50
Normal topic docking in rosetta 3.3
by Ammu » Thu, 2012-03-15 12:03
6
6,284 by smlewis
Mon, 2014-04-21 06:47
Normal topic Enzyme design with variable CST blocks possible?
by petrikigor » Thu, 2011-10-06 11:24
6
7,418 by petrikigor
Mon, 2014-04-21 06:47
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