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Rosetta 3 - Applications
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Rosetta RNA denovo huge memory usage (probable memory leak) by cdegut » Mon, 2017-10-30 16:41 |
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3,683 |
by cdegut Fri, 2017-11-03 05:50 |
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Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress) by Danielsebas » Mon, 2019-09-23 03:24 |
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2,603 |
by smlewis Mon, 2019-09-23 11:42 |
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Using MoveMap within Relax Application? by m_grisewood » Mon, 2012-08-13 12:21 |
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6,564 |
by m_grisewood Mon, 2014-04-21 06:47 |
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Snugdock_input by luicui » Wed, 2017-01-18 16:48 |
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3,770 |
by smlewis Fri, 2017-01-20 08:14 |
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-score_app:linmin flag not working by fglaser » Tue, 2011-03-01 06:04 |
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4,939 |
by smlewis Mon, 2014-04-21 06:47 |
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Ligand Docking with Rosetta Scripts memory problem by Swillard » Thu, 2017-08-17 14:59 |
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4,225 |
by rmoretti Mon, 2018-11-12 14:31 |
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RosettaCM -weights, fragments and relax by jsv » Tue, 2017-05-09 10:20 |
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4,390 |
by rmoretti Thu, 2017-06-01 08:52 |
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Cartesian-space refinement by sjyang7 » Wed, 2017-05-31 19:34 |
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4,915 |
by sjyang7 Sat, 2017-06-03 06:09 |
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Does linker modeling exist? by aroop » Wed, 2012-02-22 07:34 |
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4,869 |
by smlewis Mon, 2014-04-21 06:47 |
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cyclization_type flag in simple_cycpep_predict by Florent Langenfeld » Thu, 2018-01-04 09:22 |
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3,812 |
by Florent Langenfeld Tue, 2018-03-27 11:44 |
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RosettaLigand: How to score native pose in protein-ligand docking experiment? by Ryhon Wang » Tue, 2015-11-10 01:30 |
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5,224 |
by Ryhon Wang Mon, 2016-01-04 19:59 |
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Rosetta ScriptsFeatures Reporter issue by David Weis » Sun, 2017-03-12 08:19 |
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4,129 |
by David Weis Mon, 2017-03-13 10:59 |
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RosettaVIP: ERROR: seqpos <= size() by Anonymous » Thu, 2012-07-26 07:30 |
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5,998 |
by Anonymous Mon, 2014-04-21 06:47 |
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Enzdes: increase weight of energy term for steric clashes with ligand by eyong123 » Wed, 2015-03-25 09:12 |
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5,495 |
by rmoretti Fri, 2015-04-24 12:02 |
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RosettaScripts LinkResidues by Yero » Fri, 2019-05-17 05:26 |
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3,488 |
by Yero Thu, 2019-07-18 01:39 |
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domain:domain fusion by felipet » Thu, 2017-06-15 13:13 |
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4,699 |
by felipet Fri, 2017-06-16 11:42 |
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Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans? by ccottrell » Tue, 2020-05-05 20:30 |
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2,337 |
by jadolfbr Wed, 2020-05-06 11:37 |
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ddg dG_separate by gw » Wed, 2012-08-22 11:25 |
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5,484 |
by smlewis Mon, 2014-04-21 06:47 |
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Error src/core/scoring/MembraneTopology.cc line: 139 by Daniel Hall » Thu, 2017-07-13 04:58 |
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5,031 |
by rmoretti Tue, 2017-07-18 09:00 |
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the flexpepdock refinement and ab-initio by tfliu » Mon, 2013-12-23 19:17 |
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5,843 |
by tfliu Mon, 2014-04-21 06:48 |
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mover "RepackMinimize" does not support chains > 2? by jarod » Mon, 2013-05-20 02:17 |
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6,907 |
by jarod Mon, 2014-04-21 06:47 |
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Relax a structure with >1 copy of a modified residue fails [Solved] by franfdez » Wed, 2012-02-08 00:47 |
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5,910 |
by franfdez Mon, 2014-04-21 06:47 |
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Translate mover chain X doesnot exist. by surya » Thu, 2020-07-09 08:36 |
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2,678 |
by rmoretti Tue, 2020-07-14 10:54 |
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Abinitio doesn't run but does not give output or error by Irving » Fri, 2016-10-28 10:04 |
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5,144 |
by rmoretti Mon, 2017-01-23 08:52 |
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Docking with constraints by ytao » Tue, 2013-04-02 09:45 |
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7,417 |
by smlewis Mon, 2014-04-21 06:47 |
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jd2 quits before reaching -nstruct # in roseta_scripts.mpi.linuxgccrelease by fradom » Mon, 2017-11-27 02:55 |
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4,173 |
by fradom Tue, 2017-12-05 01:52 |
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loop modeling during enzyme design? by lzx32 » Wed, 2011-11-16 00:30 |
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5,305 |
by lzx32 Mon, 2014-04-21 06:47 |
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Can I believe the antibody design result? by Sunyp_IM » Mon, 2020-11-30 03:29 |
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2,442 |
by jadolfbr Sun, 2020-12-06 17:41 |
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RosettaLigand - strange score behavior by Gerdes » Mon, 2014-02-03 02:24 |
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6,225 |
by Gerdes Fri, 2014-02-07 06:48 |
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Can't generate a cst file to use with ddg_monomer application by ctqwong » Sat, 2021-03-13 03:53 |
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2,204 |
by ctqwong Thu, 2021-03-18 02:04 |
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enzyme design and output_matchres_only by petrikigor » Wed, 2012-10-24 18:45 |
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4,700 |
by petrikigor Mon, 2014-04-21 06:47 |
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Enzdes score file discrepancy between generated pdb and scores.out by eyong123 » Wed, 2015-03-25 08:52 |
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6,521 |
by eyong123 Mon, 2015-06-29 04:44 |
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Enzyme design with variable CST blocks possible? by petrikigor » Thu, 2011-10-06 11:24 |
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6,509 |
by petrikigor Mon, 2014-04-21 06:47 |
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pepspec anchor dock by Astghik » Tue, 2020-10-20 05:31 |
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2,607 |
by Pappmaschee Thu, 2020-12-17 02:24 |
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Rotamers used in fixbb by lanselibai » Thu, 2014-11-06 02:47 |
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5,472 |
by lanselibai Tue, 2014-11-11 15:28 |
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rosetta_2013wk52: make_fragments.pl failed by fred » Thu, 2014-01-30 12:41 |
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7,960 |
by rmoretti Fri, 2014-02-07 08:01 |
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scoring of beta sandwich protein by attesor » Mon, 2014-11-17 08:24 |
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5,366 |
by rmoretti Thu, 2014-11-20 10:46 |
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CS-HM-Rosetta by pwurm » Thu, 2013-03-07 12:56 |
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6,474 |
by Marius1987 Fri, 2016-02-05 07:20 |
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Incorrect Jump being set in RosettaScripts docking mover by weehee » Fri, 2012-06-08 10:23 |
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7,031 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to define pi-pi stacking in cst file? by lzx32 » Mon, 2011-07-04 23:47 |
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7,459 |
by lzx32 Mon, 2014-04-21 06:47 |
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Line search failed even after resetting Hessian by Loki01 » Wed, 2017-12-13 16:52 |
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5,121 |
by Loki01 Thu, 2018-02-15 13:54 |
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Missing "Bio.PDB" module when running "remove_loop_coords.py" by lanselibai » Mon, 2014-09-29 04:34 |
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9,481 |
by lanselibai Wed, 2014-10-01 02:13 |
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ab inito memberane(error in alignblast.pl) by kingljy » Tue, 2011-05-03 23:41 |
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6,496 |
by karthishanmugam Mon, 2014-04-21 06:47 |
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Comparative modeling stops with "no more batches to process... " / no output by eskici » Tue, 2012-08-28 12:13 |
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5,748 |
by eskici Mon, 2014-04-21 06:47 |
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Abinitio (3.4) Error: no fragment to compute secondary structure by skovacs » Tue, 2012-09-18 13:49 |
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6,879 |
by skovacs Mon, 2014-04-21 06:47 |
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"sparks failed" error when running "make_fragments.pl"? by Danielsebas » Tue, 2019-09-03 03:43 |
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3,331 |
by Jacob_Verburgt Tue, 2020-03-10 14:39 |
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Problems with ligand when running RosettaLigand by Cat » Mon, 2013-05-20 15:58 |
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5,915 |
by Aben Tue, 2023-04-18 01:31 |
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Multistate design output by tong » Wed, 2018-06-20 00:21 |
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3,438 |
by tong Sun, 2018-06-24 23:30 |
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Cannot get a negative score after relax by kxiao » Tue, 2014-01-28 22:28 |
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7,241 |
by rmoretti Mon, 2014-04-21 06:48 |
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Help with enzyme design by lzx32 » Fri, 2011-04-08 22:29 |
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5,851 |
by lzx32 Mon, 2014-04-21 06:47 |
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FloppyTail :How to specify range of design(mutation) by syoifczeri » Mon, 2015-11-02 04:14 |
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5,820 |
by syoifczeri Sat, 2015-11-07 21:42 |
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Distinctions between InterfaceAnalyzer and RosettaScript by achambe » Wed, 2015-06-17 10:14 |
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7,431 |
by rmoretti Wed, 2015-09-02 12:43 |
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Problem with hotspot constraints. by jarek » Wed, 2012-10-17 03:22 |
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5,159 |
by xfliu Mon, 2014-04-21 06:47 |
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Results of enzyme_design not consistent with Resfile by yogeshkd » Thu, 2013-02-14 15:56 |
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5,989 |
by yogeshkd Mon, 2014-04-21 06:47 |
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protein docking failed by albumns » Thu, 2012-11-08 02:59 |
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5,600 |
by rmoretti Mon, 2014-04-21 06:47 |
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errors about RIFdocking by sia » Sun, 2022-07-24 20:45 |
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1,261 |
by sia Tue, 2022-08-02 20:08 |
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ligand docking, how to combine some silent.out files into a silent_all.out file by Ryhon Wang » Fri, 2013-12-06 01:53 |
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6,627 |
by rmoretti Wed, 2017-01-11 12:53 |
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How to model missing residues on a protein from multiple PDB files? by cossio » Fri, 2015-08-21 07:18 |
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12,094 |
by rmoretti Fri, 2015-09-11 13:27 |
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terminal amino acids of gap has incomplete valency by malkeet.singh » Wed, 2017-11-29 05:20 |
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3,778 |
by rmoretti Fri, 2017-12-01 12:05 |
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How to choose designed antibody by Sunyp_IM » Wed, 2020-06-24 10:06 |
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3,065 |
by chandana Tue, 2022-08-09 20:27 |
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symmetric design in the presence of a nonsymmetric ligand by msardejani » Fri, 2016-09-30 15:17 |
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5,426 |
by msardejani Sat, 2016-10-01 12:55 |
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the ddg of mutant is same as the wt by deepanshuiitb » Wed, 2015-03-04 11:56 |
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6,056 |
by jadolfbr Tue, 2015-04-07 10:50 |
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docking in rosetta 3.3 by Ammu » Thu, 2012-03-15 12:03 |
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5,476 |
by smlewis Mon, 2014-04-21 06:47 |
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Make error during installation of updated ncbi-blast-2.9.0+-src plus error with nr-database by Corvin » Tue, 2019-10-01 02:04 |
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5,299 |
by Corvin Tue, 2019-10-15 01:12 |
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Loop modeling - the appropriate way to model a peptide insertion? by xding » Thu, 2018-08-02 15:30 |
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4,075 |
by smlewis Wed, 2018-08-08 15:48 |
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ERROR: Unable to fill in missing atoms. by mieczyslaw » Tue, 2020-10-20 09:43 |
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4,931 |
by rayyoung Thu, 2021-11-18 10:13 |
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How can I prevent coordinates shift when using "loopmodel.linuxgccrelease"? by lanselibai » Tue, 2014-11-04 14:56 |
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6,980 |
by lanselibai Wed, 2014-11-12 11:17 |
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where is pdb2vall.py by tevang » Thu, 2013-01-24 13:35 |
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6,445 |
by dktest Mon, 2014-04-21 06:47 |
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SnugDocking a VHH:antigen complex possible? by David Weis » Thu, 2017-02-16 05:57 |
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5,290 |
by rmoretti Thu, 2017-07-06 13:00 |
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Can rosetta generate a centroid model based on the rna sequence? by yels » Fri, 2021-03-26 04:06 |
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2,276 |
by yels Wed, 2021-03-31 18:31 |
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H3 modeling takes 10 days more? by jessye » Fri, 2017-10-27 03:11 |
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4,573 |
by jessye Fri, 2017-11-03 20:15 |
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running in MPI mode and multiple scores per output PDB file? by dantimatter » Wed, 2019-10-30 09:42 |
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4,257 |
by dantimatter Wed, 2019-11-06 09:51 |
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Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring by brspurri » Wed, 2017-03-29 13:19 |
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5,391 |
by matteoferla Mon, 2021-07-19 06:13 |
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Fragment files for membrane_abinitio application by sumukh21 » Sun, 2011-02-13 20:34 |
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6,155 |
by yarovoy Mon, 2014-04-21 06:47 |
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modeling phosphorylated residue by rosetter » Fri, 2011-03-18 08:13 |
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7,796 |
by smlewis Mon, 2014-04-21 06:47 |
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How to find cluster core structure? by assignfit » Thu, 2012-03-29 20:35 |
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6,558 |
by attesor Wed, 2017-06-14 07:32 |
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Write one's own constraint type by djpittdj » Thu, 2012-11-08 12:29 |
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6,049 |
by smlewis Mon, 2014-04-21 06:47 |
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Abinitio Relax Error from -kill_hairpins by attesor » Tue, 2014-10-28 05:33 |
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6,801 |
by rmoretti Tue, 2014-11-04 10:28 |
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Inserting residues using RosettaRemodel by eleishaj » Tue, 2015-11-24 08:54 |
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7,468 |
by eyong123 Wed, 2015-12-09 07:17 |
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How to write down a connection between ligand's atom and metal ion from enzyme? by Corvin » Mon, 2021-02-15 06:54 |
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2,591 |
by aloshbau Mon, 2021-03-01 20:06 |
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suppress pdb output from backrub by attesor » Mon, 2014-10-27 11:16 |
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6,333 |
by rmoretti Mon, 2014-11-03 15:47 |
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If "clustering.py" can be used for PDBs contain two chains? by lanselibai » Wed, 2014-11-05 06:05 |
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6,414 |
by lanselibai Tue, 2014-12-02 09:43 |
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Ensemble Docking in Rosetta3.5? by protos_heis » Fri, 2015-05-22 06:42 |
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7,721 |
by protos_heis Mon, 2015-06-08 07:00 |
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"ddg_monomer.linuxgccrelease" by following "High Resolution Protocol" by lanselibai » Wed, 2014-10-01 09:54 |
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9,957 |
by lanselibai Sat, 2015-01-03 08:18 |
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neutral N-term and C-term by nawsad » Sun, 2013-06-09 10:20 |
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8,213 |
by helenah Thu, 2020-10-08 05:29 |
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ddg_monomer consumes massive RAM by cossio » Fri, 2018-03-09 17:02 |
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5,340 |
by rmoretti Mon, 2018-03-19 12:12 |
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protein structure prediction using relax -- high-powered jobs by rfieldhouse » Mon, 2011-05-30 18:29 |
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7,033 |
by dimaio Mon, 2014-04-21 06:47 |
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RosettaRemodel can not work now? by myputer » Tue, 2013-08-13 16:56 |
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6,860 |
by rmoretti Mon, 2014-04-21 06:48 |
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Rosetta scoring by Dimitrov » Thu, 2012-09-20 01:54 |
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9,051 |
by attesor Mon, 2014-04-21 06:47 |
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About scorefunction. by Run » Mon, 2013-09-09 23:08 |
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6,835 |
by rmoretti Mon, 2014-04-21 06:48 |
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segmentation fault after core.kinematics.FoldTree in homology modeling by pdbb » Mon, 2012-10-08 14:27 |
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6,921 |
by rmoretti Mon, 2014-04-21 06:47 |
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variable length fragments for Ab initio by attesor » Wed, 2015-07-01 06:13 |
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6,247 |
by rmoretti Tue, 2015-08-18 16:47 |
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Problem about energy score by tfliu » Tue, 2013-11-05 02:09 |
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7,089 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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Adding bridged water interaction in constraint file by purvi24 » Thu, 2019-02-28 07:01 |
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4,362 |
by purvi24 Mon, 2019-03-11 06:43 |
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demo of molecular replacement with rosetta (mr_rosetta) by wenchangyu2008 » Sun, 2011-03-20 05:23 |
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10,292 |
by astrofunk12 Mon, 2014-04-21 06:47 |
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Converting -patch replonly residues to original sequence by subha » Mon, 2017-06-26 13:39 |
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5,273 |
by smlewis Tue, 2017-07-04 15:42 |
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Question about running scallo by danbo » Mon, 2021-11-29 23:25 |
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2,409 |
by danbo Wed, 2021-12-22 23:51 |
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Multistate design on Rosetta - no generations produced by tong » Wed, 2018-06-13 00:36 |
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4,623 |
by smlewis Thu, 2018-06-14 10:26 |
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Problems with Ligand Docking by saxen » Fri, 2011-08-19 00:19 |
8 |
8,027 |
by glemmon Mon, 2014-04-21 06:47 |
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Fold tree C->N: RosettaScripts by aroop » Wed, 2013-02-13 10:31 |
8 |
7,321 |
by smlewis Mon, 2014-04-21 06:47 |
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