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Rosetta 3 - Applications
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Global Docking with carbohydrates by ChiauShu » Sat, 2020-08-22 20:16 |
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658 |
by ChiauShu Sat, 2020-08-22 20:16 |
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fragment_picker bug by David Hoover » Wed, 2012-02-29 11:43 |
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1,603 |
by David Hoover Mon, 2014-04-21 06:47 |
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Creating fragment files for proteins less than 27 aa in length by Poladu » Tue, 2021-01-26 07:50 |
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584 |
by Poladu Tue, 2021-01-26 07:50 |
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comparative modelling of a complex by sdh_h » Sun, 2017-12-17 06:07 |
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880 |
by sdh_h Sun, 2017-12-17 06:07 |
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Metal Ion in symmetric design by tschiex » Wed, 2020-07-08 05:28 |
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650 |
by tschiex Wed, 2020-07-08 05:28 |
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Can remodel really handle multiple insertions in one simulation? by lanselibai » Sat, 2019-12-28 12:51 |
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676 |
by lanselibai Sat, 2019-12-28 12:51 |
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minimize_ppi.mpi.linuxgccrelease doesn't use jd2? by e3lm » Tue, 2022-05-17 11:58 |
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479 |
by e3lm Tue, 2022-05-17 11:58 |
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denovo_density don't output a pdb file by ylwang » Sun, 2018-11-18 17:51 |
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834 |
by ylwang Sun, 2018-11-18 17:51 |
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mp_transform optimize with franklin2019 scoring by benhardy » Thu, 2020-05-28 08:35 |
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892 |
by benhardy Thu, 2020-05-28 08:45 |
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Remodel's problem in treatment with non-protein residues by Corvin » Mon, 2021-12-13 09:07 |
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583 |
by Corvin Mon, 2021-12-13 09:07 |
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Patch to impose tetrahedral geometry on backbone O atom by georg » Thu, 2021-04-08 09:30 |
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519 |
by georg Thu, 2021-04-08 09:31 |
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RemodelMover and Input Pose by ozyo » Tue, 2020-12-29 09:41 |
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633 |
by ozyo Tue, 2020-12-29 09:41 |
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I need help with cst file the paper: De Novo Computational Design of Retro-Aldol Enzymes by Wenithor » Thu, 2022-01-06 12:20 |
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634 |
by Wenithor Thu, 2022-01-06 12:20 |
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Pepspec Anchor Dock by Soler » Fri, 2020-09-18 08:09 |
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778 |
by Soler Fri, 2020-09-18 08:09 |
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Symmetry definition question by mrconde96 » Sun, 2022-10-02 05:34 |
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971 |
by mrconde96 Sun, 2022-10-02 05:34 |
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Flexpepdock I_hb scoring term by mbakalar » Fri, 2018-08-31 13:05 |
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926 |
by mbakalar Fri, 2018-08-31 13:06 |
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General question regarding ligand-docking by Alison_Yajie » Thu, 2020-05-07 09:48 |
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596 |
by Alison_Yajie Thu, 2020-05-07 09:48 |
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Modelling of multi-component symmetrical structures by LanMei » Wed, 2020-10-07 09:58 |
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719 |
by LanMei Wed, 2020-10-07 09:58 |
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Problem with Scoring function and PlaceStub mover by a-eatemadi@razi... » Sat, 2018-04-07 09:22 |
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933 |
by a-eatemadi@razi... Sat, 2018-04-07 09:24 |
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What is interface_cutoff_distance? And why did my residues outside this value get designed? by chrisHKL » Fri, 2020-02-28 14:52 |
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722 |
by chrisHKL Fri, 2020-02-28 14:52 |
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clustering output file has few structures by fabiotrovato » Mon, 2020-08-17 11:37 |
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565 |
by fabiotrovato Mon, 2020-08-17 11:37 |
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Domain insertion with Non-CAA by mwfranklin » Mon, 2017-01-16 12:30 |
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1,514 |
by mwfranklin Mon, 2017-01-16 12:30 |
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Segment File Gen - no ouput by CATarr » Wed, 2019-10-09 19:05 |
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706 |
by CATarr Wed, 2019-10-09 19:05 |
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RosettaAntibody - No matching templates for CDR1 by agctomer » Tue, 2021-01-19 22:45 |
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642 |
by agctomer Tue, 2021-01-19 22:45 |
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Generating the 3-mer and 9-mer fragments by Prasoon » Wed, 2022-02-09 09:04 |
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692 |
by Prasoon Wed, 2022-02-09 09:04 |
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antibody.mpi.linuxgccrelease some antibodies failing to model by drewaight » Mon, 2020-11-02 17:07 |
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874 |
by drewaight Mon, 2020-11-02 17:07 |
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Rosetta DARc suboptimal dockings by ddhoyo » Mon, 2021-10-11 06:18 |
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479 |
by ddhoyo Mon, 2021-10-11 06:18 |
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Snugdock Error: The sequence position requested was greater than the number of residues by stannowitz » Tue, 2023-01-17 07:37 |
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690 |
by stannowitz Tue, 2023-01-17 23:48 |
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wallpaper symmetry definition file by aaj » Fri, 2016-02-26 08:40 |
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1,212 |
by aaj Fri, 2016-02-26 08:40 |
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pMHC modelling by Roberto » Thu, 2022-08-04 07:11 |
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402 |
by Roberto Thu, 2022-08-04 07:11 |
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membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template? by fglaser » Thu, 2011-04-07 07:57 |
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2,042 |
by fglaser Mon, 2014-04-21 06:47 |
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Interesting scoring performance in flexpepdock against random peptides by ziqi1234 » Fri, 2017-12-08 07:52 |
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904 |
by ziqi1234 Fri, 2017-12-08 07:52 |
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An error with score app by Genta » Tue, 2019-10-29 18:46 |
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1,084 |
by Genta Tue, 2019-10-29 18:46 |
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Fragment library (vall file) from Robetta? by alex » Sun, 2017-02-19 08:12 |
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1,402 |
by alex Sun, 2017-02-19 08:12 |
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using piper-flexpepdock by syntekabio2019 » Thu, 2019-12-12 01:22 |
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966 |
by syntekabio2019 Thu, 2019-12-12 01:22 |
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Ab Initio folding with HEM ligand molecule by jseco » Fri, 2021-03-05 06:49 |
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547 |
by jseco Mon, 2021-03-08 03:40 |
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Dimeric interface redesign by kjs1728 » Mon, 2022-05-02 21:57 |
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473 |
by kjs1728 Mon, 2022-05-02 21:57 |
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SecundaryStructure Filter by Soler » Sun, 2021-11-21 22:20 |
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608 |
by Soler Sun, 2021-11-21 22:20 |
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how to control alignment for energy_based_clustering by xfradera » Tue, 2023-02-28 10:13 |
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1,498 |
by xfradera Tue, 2023-02-28 10:13 |
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Rosetta remodel - including an RNA ligand by daniloboskovic » Fri, 2020-04-10 04:24 |
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744 |
by daniloboskovic Fri, 2020-04-10 04:24 |
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csrosetta.org login by jfeuva » Tue, 2014-12-09 14:49 |
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24,210 |
by jfeuva Tue, 2014-12-09 14:49 |
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Zero residues error in docking by cjy318 » Tue, 2020-07-28 19:47 |
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709 |
by cjy318 Tue, 2020-07-28 19:47 |
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Params for a stapled helix peptide by e3lm » Thu, 2022-05-26 12:55 |
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471 |
by e3lm Thu, 2022-05-26 12:55 |
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Error when using Remodel on a protein with a chemically bound ligand by Pappmaschee » Wed, 2020-12-16 09:23 |
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764 |
by Pappmaschee Wed, 2020-12-16 09:23 |
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simple_cycpep_predict with N-term acetylation by Ken » Fri, 2021-12-17 09:49 |
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594 |
by Ken Fri, 2021-12-17 09:49 |
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FlexPepDocking by jlawrie » Tue, 2020-09-15 12:52 |
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661 |
by jlawrie Tue, 2020-09-15 12:52 |
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Macrocycle from a C-terminal amidated peptide by almeida85 » Thu, 2022-08-18 07:53 |
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453 |
by almeida85 Thu, 2022-08-18 07:53 |
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Folding and Docking using Symmetry by danielles » Wed, 2012-09-12 11:32 |
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1,681 |
by danielles Mon, 2014-04-21 06:47 |
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Secondary Matching build_sets Error by enmirts » Wed, 2018-03-28 10:33 |
0 |
900 |
by enmirts Wed, 2018-03-28 10:34 |
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multi ligand docking using rosetta script by syntekabio2019 » Tue, 2021-04-13 19:31 |
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560 |
by syntekabio2019 Tue, 2021-04-13 19:31 |
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Per residue total score by johnnytam100 » Wed, 2022-07-13 21:57 |
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422 |
by johnnytam100 Wed, 2022-07-13 21:57 |
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rosetta remodel and designing helix extension by dhirajks » Thu, 2018-12-13 19:34 |
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946 |
by dhirajks Thu, 2018-12-13 19:34 |
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constraints in Rosetta ligand docking (AddorRemoveMatchCsts, Addconstraints Mover, and ConstraintSetMover) by rohi » Mon, 2021-01-11 13:32 |
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756 |
by rohi Mon, 2021-01-11 13:58 |
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Can anybody suggests some flags to run Rifdock? by Hyunmi Song » Sun, 2022-01-23 16:45 |
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784 |
by Hyunmi Song Sun, 2022-01-23 16:45 |
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FlexPepDock bug? Constraints do not appear in total_score? by nrollins » Mon, 2021-07-26 14:29 |
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488 |
by nrollins Mon, 2021-07-26 14:29 |
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Ligand Rotamer Control in Macther by Hirbond » Tue, 2022-10-25 13:01 |
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1,427 |
by Hirbond Wed, 2022-10-26 12:57 |
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Symmetry definition file versions by Jeff Qu » Tue, 2021-09-28 09:53 |
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532 |
by Jeff Qu Tue, 2021-09-28 09:53 |
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RosettaCM Ignoring Ligand by Delfosse57 » Sun, 2022-12-04 12:05 |
0 |
3,601 |
by Delfosse57 Sun, 2022-12-04 12:05 |
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FloppyTail as a rosettascripts file by tiagogomes89 » Mon, 2015-01-19 02:45 |
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1,215 |
by tiagogomes89 Mon, 2015-01-19 02:45 |
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Fewer than expected structures in clustering output by fabiotrovato » Thu, 2020-08-20 00:59 |
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575 |
by fabiotrovato Thu, 2020-08-20 00:59 |
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Benchmarking Rosetta DDG Methods by sareeves96 » Fri, 2022-07-29 09:55 |
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432 |
by sareeves96 Fri, 2022-07-29 09:55 |
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Ligand docking with constraint by Alison_Yajie » Wed, 2020-06-24 12:34 |
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626 |
by Alison_Yajie Wed, 2020-06-24 12:34 |
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Question with rosetta AbPredict tutorial by terabithia2011 » Mon, 2021-01-25 09:24 |
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566 |
by terabithia2011 Mon, 2021-01-25 09:24 |
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Rosetta Matcher not recognizing protonation forms of CST files like CYZ, HIS_D, etc by Hirbond » Tue, 2022-03-01 13:16 |
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582 |
by Hirbond Tue, 2022-03-01 13:16 |
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The problems on pdb renumbering by Sunyp_IM » Sun, 2017-08-20 06:39 |
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1,882 |
by Sunyp_IM Sun, 2017-08-20 06:39 |
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Comparing a prediction to the native structure and calculate RMSD for RNA by danwolf_33 » Thu, 2023-02-09 09:32 |
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1,493 |
by danwolf_33 Thu, 2023-02-09 09:34 |
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application for affinity optimization by wentlewi » Fri, 2020-03-13 03:24 |
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766 |
by wentlewi Fri, 2020-03-13 03:24 |
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FastRelax Refinement severe clashes by Victor Tobiasson » Thu, 2021-05-20 06:55 |
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538 |
by Victor Tobiasson Thu, 2021-05-20 06:55 |
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Does antibody_numbering_converter support camelid antibody? by mxp » Tue, 2020-07-07 01:21 |
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644 |
by mxp Tue, 2020-07-07 01:21 |
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problem in using "zinc_site_redesign" tool by Isomerase » Mon, 2022-03-28 01:19 |
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458 |
by Isomerase Mon, 2022-03-28 01:19 |
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How many iterations of remodel is enough? by daniloboskovic » Thu, 2020-07-16 08:07 |
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607 |
by daniloboskovic Thu, 2020-07-16 08:14 |
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extract docking pose from ligand docking silent file by Ruska322 » Sat, 2019-09-07 05:21 |
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814 |
by Ruska322 Sat, 2019-09-07 05:21 |
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How to apply cartesian_ddg to multi-metric enzyme? by Wang Zhe » Wed, 2021-12-08 10:07 |
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573 |
by Wang Zhe Wed, 2021-12-08 10:07 |
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Urgent issue: Error with submitting a new Rosetta-Vienna RNP-ddG job by eyaaaan » Sun, 2022-08-07 22:03 |
0 |
442 |
by eyaaaan Tue, 2022-08-09 21:59 |
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PDB Clustering by code_Monkey » Mon, 2021-04-05 10:40 |
0 |
542 |
by code_Monkey Mon, 2021-04-05 10:40 |
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backrub application, resfile, and pivot_residues by tylerborrman » Tue, 2016-12-06 14:46 |
0 |
1,037 |
by tylerborrman Tue, 2016-12-06 14:46 |
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Dock two domains using topology broker by sn » Thu, 2017-10-05 17:07 |
0 |
928 |
by sn Thu, 2017-10-05 17:07 |
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"Residue 7 was disulfide bonded but had no partner" with antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-06-04 05:53 |
0 |
638 |
by Sunyp_IM Thu, 2020-06-04 05:54 |
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Protein design: Ligand binding between two units of a homodimer by chemotaxis_123 » Sun, 2022-01-02 16:01 |
0 |
576 |
by chemotaxis_123 Sun, 2022-01-02 16:01 |
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FlexPepDock Multi chain receptor by evo_umich » Mon, 2018-04-02 12:13 |
0 |
1,011 |
by evo_umich Mon, 2018-04-02 12:13 |
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Error with RNA_denovo by zmfowler » Thu, 2022-07-14 05:34 |
0 |
421 |
by zmfowler Thu, 2022-07-14 05:34 |
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RNP structure prediction flags by daniloboskovic » Fri, 2019-08-16 11:10 |
0 |
774 |
by daniloboskovic Fri, 2019-08-16 11:17 |
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Robetta ab initio - TrRosetta for membrane proteins by benhardy » Wed, 2020-09-30 08:42 |
0 |
1,093 |
by benhardy Wed, 2020-09-30 08:42 |
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Topobuilder segmentation fault by tatsiana.bylund » Mon, 2021-08-09 07:10 |
0 |
778 |
by tatsiana.bylund Mon, 2021-08-09 07:10 |
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Help to understand docking results by rtorquato » Fri, 2022-11-25 12:05 |
0 |
1,114 |
by rtorquato Fri, 2022-11-25 12:05 |
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Pepspec options by shaunmk » Mon, 2015-04-27 02:33 |
0 |
1,449 |
by shaunmk Mon, 2015-04-27 02:33 |
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Linker Building in scFv by sam_dc » Sat, 2021-10-09 05:38 |
0 |
541 |
by sam_dc Sat, 2021-10-09 05:38 |
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RosettaAntibody3 - How can I model an extended H3? by brspurri » Fri, 2020-08-28 09:11 |
0 |
639 |
by brspurri Fri, 2020-08-28 09:11 |
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Scoring after HBNet by HHL_SIUC » Wed, 2020-07-01 10:49 |
0 |
616 |
by HHL_SIUC Wed, 2020-07-01 10:49 |
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help surface_docking peptide on ice by engand93 » Wed, 2019-03-27 02:43 |
0 |
777 |
by engand93 Wed, 2019-03-27 02:43 |
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pmut_scan_parallel by G Mustafa » Wed, 2018-10-17 05:41 |
0 |
1,161 |
by G Mustafa Wed, 2018-10-17 05:41 |
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ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-05-21 09:42 |
0 |
713 |
by Alison_Yajie Thu, 2020-05-21 09:42 |
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constraining different chains together in rosetta_cm by y_atsmonraz » Thu, 2021-11-18 02:59 |
0 |
594 |
by y_atsmonraz Thu, 2021-11-18 03:01 |
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Finding lowest energy structure among generated structures by Marius1987 » Sun, 2016-04-10 11:38 |
0 |
1,360 |
by Marius1987 Sun, 2016-04-10 12:09 |
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What means "[ ERROR ] TIME_STAMP: AbrelaxMover: finished ...NO_BATCH S_0001." by Corvin » Thu, 2020-04-02 00:16 |
0 |
771 |
by Corvin Thu, 2020-04-02 00:16 |
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RosettaAntibody3 core.pose.util error by linhhoang157 » Tue, 2020-07-28 12:40 |
0 |
768 |
by linhhoang157 Tue, 2020-07-28 12:40 |
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IL-2 gets better binding with beta / gamma by tonycheng1688 » Wed, 2022-05-25 10:23 |
0 |
503 |
by tonycheng1688 Wed, 2022-05-25 10:23 |
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Problems with mpi version of antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 23:06 |
0 |
802 |
by Sunyp_IM Thu, 2020-05-28 23:07 |
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Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)? by Corvin » Wed, 2020-12-16 04:58 |
0 |
719 |
by Corvin Wed, 2020-12-30 09:21 |
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Segfault error while running MR Rosetta in Phenix by memilton » Thu, 2021-12-16 09:09 |
0 |
655 |
by memilton Thu, 2021-12-16 09:09 |
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