You are here

Rosetta 3 - Applications

Topic / Topic starter Repliessort ascending Views Last post
Normal topic pmut_scan_parallel
by G Mustafa » Wed, 2018-10-17 05:41
0
1,436 by G Mustafa
Wed, 2018-10-17 05:41
Normal topic ligand_docking: ligand preparation
by Alison_Yajie » Thu, 2020-05-21 09:42
0
936 by Alison_Yajie
Thu, 2020-05-21 09:42
Normal topic constraining different chains together in rosetta_cm
by y_atsmonraz » Thu, 2021-11-18 02:59
0
805 by y_atsmonraz
Thu, 2021-11-18 03:01
Normal topic cluster,how to get the statistic data
by MajorID » Wed, 2011-06-08 09:20
0
1,959 by MajorID
Mon, 2014-04-21 06:47
Normal topic Problems with mpi version of antibody.linuxgccrelease
by Sunyp_IM » Thu, 2020-05-28 23:06
0
1,066 by Sunyp_IM
Thu, 2020-05-28 23:07
Normal topic Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)?
by Corvin » Wed, 2020-12-16 04:58
0
1,053 by Corvin
Wed, 2020-12-30 09:21
Normal topic Segfault error while running MR Rosetta in Phenix
by memilton » Thu, 2021-12-16 09:09
0
1,003 by memilton
Thu, 2021-12-16 09:09
Normal topic Docking HeparinSulfate to proteins using GlycanDock
by GebauerJ » Tue, 2022-08-16 07:44
0
895 by GebauerJ
Tue, 2022-08-16 07:44
Normal topic Helical Symmetry Axis
by Sandy » Tue, 2016-05-31 18:48
0
1,731 by Sandy
Tue, 2016-05-31 18:48
Normal topic RosettaAntibody3 core.pose.util error
by linhhoang157 » Tue, 2020-07-28 12:40
0
981 by linhhoang157
Tue, 2020-07-28 12:40
Normal topic IL-2 gets better binding with beta / gamma
by tonycheng1688 » Wed, 2022-05-25 10:23
0
881 by tonycheng1688
Wed, 2022-05-25 10:23
Normal topic Design of multimeric protein
by ldlamini » Mon, 2021-01-11 07:23
0
867 by ldlamini
Mon, 2021-01-11 07:23
Normal topic ligand dock into HEM containg pdb
by syntekabio2019 » Thu, 2022-01-20 03:05
0
1,006 by syntekabio2019
Thu, 2022-01-20 03:05
Normal topic non-zero ddG of binding even without mutations
by top-gun98 » Wed, 2023-06-07 17:19
0
367 by top-gun98
Wed, 2023-06-07 17:19
Normal topic new BUNS for FunFolDes run
by tatsiana.bylund » Wed, 2019-08-14 20:57
0
965 by tatsiana.bylund
Wed, 2019-08-14 20:57
Normal topic FlexPepDock ab initio: behavior without fragment files
by nrollins » Mon, 2021-07-26 14:16
0
679 by nrollins
Mon, 2021-07-26 14:16
Normal topic Setting pivots points for GenKIC
by almeida85 » Tue, 2022-10-25 02:32
0
1,636 by almeida85
Tue, 2022-10-25 02:32
Normal topic PIPER-FlexPepDock [commercial user]
by Skelly » Tue, 2024-01-23 16:14
0
179 by Skelly
Tue, 2024-01-30 14:08
Normal topic Using GlycanDock and the Antibody Affinity Maturation protocol.
by tbelec » Mon, 2022-02-28 12:37
0
1,172 by tbelec
Mon, 2022-02-28 12:37
Normal topic Docking protein complexes when constrained by oligomer symmetry
by msk » Tue, 2014-06-03 11:09
0
1,492 by msk
Tue, 2014-06-03 11:09
Normal topic Extracting top score PIPER models
by almeida85 » Mon, 2020-08-31 07:17
0
994 by almeida85
Mon, 2020-08-31 07:17
Normal topic How to design the anitgen-antibody interface
by Sunyp_IM » Tue, 2017-12-12 18:44
0
1,206 by Sunyp_IM
Tue, 2017-12-12 18:44
Normal topic Symmetry mode in Remodel for N-terminal extension
by yvonne.chan2 » Mon, 2019-11-04 13:41
0
1,231 by yvonne.chan2
Mon, 2019-11-04 13:41
Normal topic zero standard deviation of I_sc in protein-protein docking
by rohi » Fri, 2020-07-03 22:19
0
807 by rohi
Fri, 2020-07-03 22:20
Normal topic Segfault with Pepspec
by almeida85 » Thu, 2021-02-11 02:56
0
677 by almeida85
Thu, 2021-02-11 02:56
Normal topic snugdock run error: Sequence for partner1 does not match first member of ensemble1
by pagumaaaaa » Fri, 2022-03-25 01:21
0
905 by pagumaaaaa
Fri, 2022-03-25 01:21
Normal topic Side-chain grafting at the fixed protein and position
by Kazu » Wed, 2020-05-20 08:49
0
792 by Kazu
Wed, 2020-05-20 08:49
Normal topic core.pose.util: [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard
by AlfredoKCL » Sat, 2020-11-07 18:21
0
1,278 by AlfredoKCL
Sat, 2020-11-07 18:21
Normal topic prepack - residue count fails
by xfradera » Fri, 2023-01-27 06:36
0
1,157 by xfradera
Fri, 2023-01-27 06:36
Normal topic core.pose.util: (0) {0} [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard
by ldx022 » Thu, 2023-03-16 04:13
0
1,102 by ldx022
Thu, 2023-03-16 04:13
Normal topic Symmetric assembly and output reconstruction
by felipet » Wed, 2014-07-02 10:23
0
1,457 by felipet
Wed, 2014-07-02 10:23
Normal topic Error Implementing Match Style Constraints
by pwging13 » Thu, 2019-12-19 09:53
0
986 by pwging13
Thu, 2019-12-19 09:53
Normal topic Can't find RosettaRemodel in Rosetta 3.4
by petrikigor » Mon, 2012-12-03 13:56
0
1,769 by petrikigor
Mon, 2014-04-21 06:47
Normal topic cartesian_ddg crashes when the mutfile contains multiple mutations to non-canonical residues
by ValentinaSora » Sun, 2020-05-24 12:32
0
1,375 by ValentinaSora
Sun, 2020-05-24 12:32
Normal topic Weighted scores??
by sizhang » Wed, 2018-12-05 15:22
0
978 by sizhang
Wed, 2018-12-05 15:22
Normal topic flexpepdcok of lipid conjugated peptide with glyco protein.
by ravi.thakkkar369 » Fri, 2020-12-18 13:00
0
735 by ravi.thakkkar369
Fri, 2020-12-18 13:00
Normal topic DNA-protein docking
by ksteczk » Sat, 2020-04-11 11:23
0
1,356 by ksteczk
Sat, 2020-04-11 11:23
Normal topic Pepspec Anchor Dock
by Soler » Wed, 2020-09-16 19:08
0
818 by Soler
Wed, 2020-09-16 19:08
Normal topic Repacker vs minimization
by Elijah_Hix » Fri, 2021-07-02 07:25
0
647 by Elijah_Hix
Fri, 2021-07-02 07:25
Normal topic Prepacking a macrocycle for docking / preserving cyclization
by almeida85 » Thu, 2022-09-08 06:54
0
811 by almeida85
Thu, 2022-09-08 06:54
Normal topic algebric library for rosetta
by yigallah » Mon, 2014-12-15 08:46
0
1,397 by yigallah
Mon, 2014-12-15 08:46
Normal topic appropriate sampling for protein docking to a multi chain assembly
by SWM » Fri, 2020-01-24 11:22
0
825 by SWM
Fri, 2020-01-24 11:22
Normal topic Bug Report - Encoding issue
by daniloboskovic » Tue, 2020-08-04 07:02
0
735 by daniloboskovic
Tue, 2020-08-04 07:02
Normal topic ddg_monomer: if MPI executable is reproducible and efficient?
by lanselibai » Sun, 2015-01-11 09:48
0
1,641 by lanselibai
Sun, 2015-01-11 10:50
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Mon, 2016-01-04 11:26
0
1,512 by achambe
Mon, 2016-01-04 11:26
Normal topic RosettaCM
by jlawrie » Fri, 2020-08-14 14:09
0
1,474 by jlawrie
Fri, 2020-08-14 14:09
Normal topic Error with RoseTTAFold
by sc19 » Thu, 2022-07-14 03:40
0
1,000 by sc19
Thu, 2022-07-14 03:40
Normal topic BridgeChains mover deletes residues at break
by kmj » Thu, 2024-02-22 12:14
0
61 by kmj
Thu, 2024-02-22 12:14
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
0
1,409 by a-eatemadi@razi...
Mon, 2017-12-04 23:52
Normal topic Residue selector
by Alison_Yajie » Wed, 2020-06-17 19:57
0
842 by Alison_Yajie
Thu, 2020-06-18 09:47
Normal topic FastRelaxMover parameters for antibody-antigen interaction analysis
by samuel_k » Thu, 2022-01-27 01:08
0
986 by samuel_k
Thu, 2022-01-27 01:08
Normal topic Generating a new Vall database
by vijay.anand » Tue, 2023-06-20 12:08
0
347 by vijay.anand
Tue, 2023-06-20 12:08
Normal topic fragment_picker bug
by David Hoover » Wed, 2012-02-29 11:43
0
1,768 by David Hoover
Mon, 2014-04-21 06:47
Normal topic NCAA Rotamers for Cyclosporin
by marinok » Mon, 2020-09-28 14:11
0
1,176 by marinok
Mon, 2020-09-28 14:11
Normal topic minirosetta: how to reserve (inter-chain) disulfides after relax ?
by lanselibai » Sat, 2015-01-24 10:56
0
2,238 by lanselibai
Thu, 2015-01-29 00:50
Normal topic Comparative Modeling Templates for Protein with Multiple Domains
by Morrian_Lynn » Wed, 2020-03-04 10:42
0
868 by Morrian_Lynn
Wed, 2020-03-04 10:42
Normal topic hpatch commands and how to identify patches
by Bianca Oliva » Thu, 2021-04-29 04:02
0
917 by Bianca Oliva
Thu, 2021-04-29 04:02
Normal topic CS-Rosetta cofactor
by martongadanecz » Wed, 2022-08-03 01:05
0
798 by martongadanecz
Wed, 2022-08-03 01:05
Normal topic Modelling humanized camelid like antibody
by terabithia2011 » Tue, 2021-01-26 10:12
0
838 by terabithia2011
Tue, 2021-01-26 10:12
Normal topic simple_cycpep_predict thioether_lariat option
by Ken » Mon, 2022-03-14 15:14
0
779 by Ken
Mon, 2022-03-14 15:14
Normal topic RosettaMatch and CST files
by mwfranklin » Mon, 2016-07-25 11:49
0
2,187 by mwfranklin
Mon, 2016-07-25 11:49
Normal topic how to run ala_scan.xml
by xinmiaohe » Mon, 2019-08-26 09:38
0
1,066 by xinmiaohe
Mon, 2019-08-26 09:38
Normal topic Docking of multichain oligomers
by sdh_h » Wed, 2020-03-25 12:43
0
1,061 by sdh_h
Wed, 2020-03-25 12:43
Normal topic Docking the border segments of coiled coils in parallel orientation
by Corvin » Mon, 2019-12-02 02:00
0
958 by Corvin
Mon, 2019-12-02 02:00
Normal topic about “protein mimic designer”
by sia » Wed, 2022-04-27 19:59
0
966 by sia
Wed, 2022-04-27 19:59
Normal topic Fixing and Building disulfide bonds in homology modeling
by kamau » Wed, 2014-09-24 11:33
0
2,449 by kamau
Wed, 2014-09-24 11:35
Normal topic Problems with waters in CoupledMoves application
by Corvin » Tue, 2021-11-16 07:16
0
867 by Corvin
Tue, 2021-11-16 07:22
Normal topic How to change the axes of "-spin" in docking_protocol
by Zehui Zhou » Mon, 2023-02-13 22:06
0
2,068 by Zehui Zhou
Mon, 2023-02-13 22:06
Normal topic error in loop remodeling
by syntekabio2019 » Wed, 2023-04-05 01:00
0
406 by syntekabio2019
Wed, 2023-04-05 01:01
Normal topic Nanobody design
by chandana » Tue, 2022-08-09 20:36
0
1,169 by chandana
Tue, 2022-08-09 20:36
Normal topic crazy loopmodel: linear output pdbs
by fred » Wed, 2014-12-03 12:27
0
1,378 by fred
Wed, 2014-12-03 12:28
Normal topic Enzyme Design Not Editing Structure
by liuwenxi » Wed, 2022-05-18 10:12
0
862 by liuwenxi
Wed, 2022-05-18 10:12
Normal topic charge grid in rosetta ligand docking using rosetta script
by syntekabio2019 » Mon, 2022-01-17 23:53
0
975 by syntekabio2019
Mon, 2022-01-17 23:53
Normal topic Pepspec - sequence sampling
by almeida85 » Thu, 2022-06-23 04:05
0
833 by almeida85
Thu, 2022-06-23 05:50
Normal topic remodel: what are the exact meanings of notations for secondary structure?
by lanselibai » Sat, 2015-01-17 04:53
0
1,504 by lanselibai
Sat, 2015-01-17 07:57
Normal topic DDG and interaction score problem
by a-eatemadi@razi... » Mon, 2018-04-09 22:54
0
1,206 by a-eatemadi@razi...
Mon, 2018-04-09 22:54
Normal topic membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template?
by fglaser » Thu, 2011-04-07 07:57
0
2,254 by fglaser
Mon, 2014-04-21 06:47
Normal topic Repeatability of DDG calculation
by jennifer » Wed, 2015-04-08 05:29
0
1,603 by jennifer
Wed, 2015-04-08 05:29
Normal topic structure prediction
by MA » Wed, 2018-09-05 00:50
0
967 by MA
Wed, 2018-09-05 00:50
Normal topic Error reading in/out glycosylated silent file - "Can't create a polymer bond after residue due to incompatible type"
by amorin » Mon, 2021-09-27 12:16
0
891 by amorin
Mon, 2021-09-27 12:16
Normal topic score is 0 in the output? - RosettaScripts
by chrisHKL » Thu, 2020-03-05 09:33
0
946 by chrisHKL
Thu, 2020-03-05 12:58
Normal topic Issues with modifying dock.xml for multiple ligand docking
by DGR95 » Fri, 2021-05-14 12:51
0
752 by DGR95
Fri, 2021-05-14 12:51
Normal topic Include MHC alpha helices in loop modelling protocol for pMHC complex
by Roberto » Thu, 2022-08-04 07:22
0
812 by Roberto
Thu, 2022-08-04 07:22
Normal topic how to generate the whole molecule that contains all the symmetric chains
by Sunyp_IM » Sun, 2017-12-10 19:43
0
1,202 by Sunyp_IM
Sun, 2017-12-10 19:43
Normal topic ligand_docking: ligand preparation
by Alison_Yajie » Thu, 2020-07-02 07:05
0
887 by Alison_Yajie
Thu, 2020-07-02 07:10
Normal topic core.optimization.LineMinimizer: [ ERROR ] Inaccurate G!
by aralz » Thu, 2021-02-11 00:46
0
932 by aralz
Thu, 2021-02-11 00:46
Normal topic protein relax
by Alison_Yajie » Tue, 2020-05-19 08:29
0
873 by Alison_Yajie
Tue, 2020-05-19 08:29
Normal topic Grafting using antibody.mpi.linuxgccrelease and specifying custom template which doesnt have pdb id.
by SubhaK » Wed, 2023-01-18 23:33
0
905 by SubhaK
Wed, 2023-01-18 23:33
Normal topic Use membrane or non-membrane weights in RosettaCM for a hexon in virus capsid?
by lanselibai » Sat, 2020-04-11 02:10
0
954 by lanselibai
Sat, 2020-04-11 02:10
Normal topic Folding and Docking using Symmetry
by danielles » Wed, 2012-09-12 11:32
0
1,866 by danielles
Mon, 2014-04-21 06:47
Normal topic using DARC in rosetta
by syntekabio2019 » Thu, 2019-12-12 01:27
0
954 by syntekabio2019
Thu, 2019-12-12 01:27
Normal topic Flex_ddG突变设计
by wangtao » Thu, 2022-05-05 02:46
0
952 by wangtao
Thu, 2022-05-05 02:46
Normal topic 'Use_filters true' option - failure of AbInitio Relax application
by Corvin » Wed, 2023-11-08 06:34
0
162 by Corvin
Wed, 2023-11-08 06:34
Normal topic Lots of Prepacking Jobs for Snugdock Failing
by katherinemccoy » Tue, 2023-02-28 18:17
0
2,266 by katherinemccoy
Mon, 2023-03-13 19:10
Normal topic AbinitioRelax detect_disulf_tolerance
by aarono » Tue, 2020-06-02 00:13
0
902 by aarono
Tue, 2020-06-02 00:13
Normal topic Trehalose
by jpfuenzalidawx » Thu, 2022-09-08 00:49
0
822 by jpfuenzalidawx
Thu, 2022-09-08 00:49
Normal topic Limit on backbone movement in relax?
by SWM » Fri, 2020-01-24 07:35
0
905 by SWM
Fri, 2020-01-24 07:35
Normal topic What is an SS0 predictor?
by ojmel » Fri, 2021-04-02 14:25
0
702 by ojmel
Mon, 2021-04-12 07:50
Normal topic Local docking- should I use KIC?
by seayoung lee » Fri, 2022-05-27 02:45
0
884 by seayoung lee
Fri, 2022-05-27 02:45
Normal topic Broken structure of local docking of replicadock2
by Jun » Thu, 2023-12-28 00:26
0
188 by Jun
Thu, 2023-12-28 00:26
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - Applications