You are here

Rosetta 3 - Applications

Topic / Topic starter Repliessort ascending Views Last post
Normal topic flexpepdcok of lipid conjugated peptide with glyco protein.
by ravi.thakkkar369 » Fri, 2020-12-18 13:00
0
489 by ravi.thakkkar369
Fri, 2020-12-18 13:00
Normal topic DNA-protein docking
by ksteczk » Sat, 2020-04-11 11:23
0
966 by ksteczk
Sat, 2020-04-11 11:23
Normal topic Pepspec Anchor Dock
by Soler » Wed, 2020-09-16 19:08
0
520 by Soler
Wed, 2020-09-16 19:08
Normal topic Repacker vs minimization
by Elijah_Hix » Fri, 2021-07-02 07:25
0
373 by Elijah_Hix
Fri, 2021-07-02 07:25
Normal topic Prepacking a macrocycle for docking / preserving cyclization
by almeida85 » Thu, 2022-09-08 06:54
0
195 by almeida85
Thu, 2022-09-08 06:54
Normal topic NCAA Rotamers for Cyclosporin
by marinok » Mon, 2020-09-28 14:11
0
731 by marinok
Mon, 2020-09-28 14:11
Normal topic ddg_monomer: if MPI executable is reproducible and efficient?
by lanselibai » Sun, 2015-01-11 09:48
0
1,402 by lanselibai
Sun, 2015-01-11 10:50
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Mon, 2016-01-04 11:26
0
1,269 by achambe
Mon, 2016-01-04 11:26
Normal topic RosettaCM
by jlawrie » Fri, 2020-08-14 14:09
0
1,088 by jlawrie
Fri, 2020-08-14 14:09
Normal topic Error with RoseTTAFold
by sc19 » Thu, 2022-07-14 03:40
0
227 by sc19
Thu, 2022-07-14 03:40
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
0
1,093 by a-eatemadi@razi...
Mon, 2017-12-04 23:52
Normal topic Residue selector
by Alison_Yajie » Wed, 2020-06-17 19:57
0
579 by Alison_Yajie
Thu, 2020-06-18 09:47
Normal topic FastRelaxMover parameters for antibody-antigen interaction analysis
by samuel_k » Thu, 2022-01-27 01:08
0
456 by samuel_k
Thu, 2022-01-27 01:08
Normal topic Molecular Replacement with multiple chains
by brspurri » Fri, 2011-06-10 08:25
0
1,926 by brspurri
Mon, 2014-04-21 06:47
Normal topic RosettaMatch and CST files
by mwfranklin » Mon, 2016-07-25 11:49
0
1,865 by mwfranklin
Mon, 2016-07-25 11:49
Normal topic how to run ala_scan.xml
by xinmiaohe » Mon, 2019-08-26 09:38
0
726 by xinmiaohe
Mon, 2019-08-26 09:38
Normal topic Multistate design issues with -run:msd_job_dist option and MSDMover
by elaine.thai » Wed, 2020-05-13 18:07
0
803 by elaine.thai
Wed, 2020-05-13 18:07
Normal topic minirosetta: how to reserve (inter-chain) disulfides after relax ?
by lanselibai » Sat, 2015-01-24 10:56
0
2,001 by lanselibai
Thu, 2015-01-29 00:50
Normal topic Comparative Modeling Templates for Protein with Multiple Domains
by Morrian_Lynn » Wed, 2020-03-04 10:42
0
642 by Morrian_Lynn
Wed, 2020-03-04 10:42
Normal topic hpatch commands and how to identify patches
by Bianca Oliva » Thu, 2021-04-29 04:02
0
577 by Bianca Oliva
Thu, 2021-04-29 04:02
Normal topic CS-Rosetta cofactor
by martongadanecz » Wed, 2022-08-03 01:05
0
190 by martongadanecz
Wed, 2022-08-03 01:05
Normal topic Modelling humanized camelid like antibody
by terabithia2011 » Tue, 2021-01-26 10:12
0
538 by terabithia2011
Tue, 2021-01-26 10:12
Normal topic simple_cycpep_predict thioether_lariat option
by Ken » Mon, 2022-03-14 15:14
0
304 by Ken
Mon, 2022-03-14 15:14
Normal topic Docking the border segments of coiled coils in parallel orientation
by Corvin » Mon, 2019-12-02 02:00
0
716 by Corvin
Mon, 2019-12-02 02:00
Normal topic about “protein mimic designer”
by sia » Wed, 2022-04-27 19:59
0
266 by sia
Wed, 2022-04-27 19:59
Normal topic DNA Interface design
by zadie1118 » Wed, 2011-06-22 07:05
0
1,924 by zadie1118
Mon, 2014-04-21 06:47
Normal topic Fixing and Building disulfide bonds in homology modeling
by kamau » Wed, 2014-09-24 11:33
0
2,196 by kamau
Wed, 2014-09-24 11:35
Normal topic Problems with waters in CoupledMoves application
by Corvin » Tue, 2021-11-16 07:16
0
456 by Corvin
Tue, 2021-11-16 07:22
Normal topic Docking of multichain oligomers
by sdh_h » Wed, 2020-03-25 12:43
0
747 by sdh_h
Wed, 2020-03-25 12:43
Normal topic crazy loopmodel: linear output pdbs
by fred » Wed, 2014-12-03 12:27
0
1,150 by fred
Wed, 2014-12-03 12:28
Normal topic Enzyme Design Not Editing Structure
by liuwenxi » Wed, 2022-05-18 10:12
0
253 by liuwenxi
Wed, 2022-05-18 10:12
Normal topic Nanobody design
by chandana » Tue, 2022-08-09 20:36
0
210 by chandana
Tue, 2022-08-09 20:36
Normal topic Pepspec - sequence sampling
by almeida85 » Thu, 2022-06-23 04:05
0
230 by almeida85
Thu, 2022-06-23 05:50
Normal topic charge grid in rosetta ligand docking using rosetta script
by syntekabio2019 » Mon, 2022-01-17 23:53
0
405 by syntekabio2019
Mon, 2022-01-17 23:53
Normal topic Repeatability of DDG calculation
by jennifer » Wed, 2015-04-08 05:29
0
1,373 by jennifer
Wed, 2015-04-08 05:29
Normal topic structure prediction
by MA » Wed, 2018-09-05 00:50
0
735 by MA
Wed, 2018-09-05 00:50
Normal topic Error reading in/out glycosylated silent file - "Can't create a polymer bond after residue due to incompatible type"
by amorin » Mon, 2021-09-27 12:16
0
508 by amorin
Mon, 2021-09-27 12:16
Normal topic remodel: what are the exact meanings of notations for secondary structure?
by lanselibai » Sat, 2015-01-17 04:53
0
1,273 by lanselibai
Sat, 2015-01-17 07:57
Normal topic DDG and interaction score problem
by a-eatemadi@razi... » Mon, 2018-04-09 22:54
0
942 by a-eatemadi@razi...
Mon, 2018-04-09 22:54
Normal topic protein relax
by Alison_Yajie » Tue, 2020-05-19 08:29
0
622 by Alison_Yajie
Tue, 2020-05-19 08:29
Normal topic score is 0 in the output? - RosettaScripts
by chrisHKL » Thu, 2020-03-05 09:33
0
674 by chrisHKL
Thu, 2020-03-05 12:58
Normal topic Issues with modifying dock.xml for multiple ligand docking
by DGR95 » Fri, 2021-05-14 12:51
0
470 by DGR95
Fri, 2021-05-14 12:51
Normal topic Include MHC alpha helices in loop modelling protocol for pMHC complex
by Roberto » Thu, 2022-08-04 07:22
0
173 by Roberto
Thu, 2022-08-04 07:22
Normal topic behind threading protocol
by fred » Tue, 2011-10-25 05:37
0
1,944 by fred
Mon, 2014-04-21 06:47
Normal topic how to generate the whole molecule that contains all the symmetric chains
by Sunyp_IM » Sun, 2017-12-10 19:43
0
961 by Sunyp_IM
Sun, 2017-12-10 19:43
Normal topic ligand_docking: ligand preparation
by Alison_Yajie » Thu, 2020-07-02 07:05
0
634 by Alison_Yajie
Thu, 2020-07-02 07:10
Normal topic core.optimization.LineMinimizer: [ ERROR ] Inaccurate G!
by aralz » Thu, 2021-02-11 00:46
0
620 by aralz
Thu, 2021-02-11 00:46
Normal topic using DARC in rosetta
by syntekabio2019 » Thu, 2019-12-12 01:27
0
737 by syntekabio2019
Thu, 2019-12-12 01:27
Normal topic Flex_ddG突变设计
by wangtao » Thu, 2022-05-05 02:46
0
318 by wangtao
Thu, 2022-05-05 02:46
Normal topic Use membrane or non-membrane weights in RosettaCM for a hexon in virus capsid?
by lanselibai » Sat, 2020-04-11 02:10
0
706 by lanselibai
Sat, 2020-04-11 02:10
Normal topic Limit on backbone movement in relax?
by SWM » Fri, 2020-01-24 07:35
0
683 by SWM
Fri, 2020-01-24 07:35
Normal topic What is an SS0 predictor?
by ojmel » Fri, 2021-04-02 14:25
0
440 by ojmel
Mon, 2021-04-12 07:50
Normal topic Local docking- should I use KIC?
by seayoung lee » Fri, 2022-05-27 02:45
0
272 by seayoung lee
Fri, 2022-05-27 02:45
Normal topic AbinitioRelax detect_disulf_tolerance
by aarono » Tue, 2020-06-02 00:13
0
682 by aarono
Tue, 2020-06-02 00:13
Normal topic Trehalose
by jpfuenzalidawx » Thu, 2022-09-08 00:49
0
149 by jpfuenzalidawx
Thu, 2022-09-08 00:49
Normal topic clashes created with enzdes
by listofdina » Mon, 2021-08-02 06:51
0
485 by listofdina
Mon, 2021-08-02 06:51
Normal topic snugdock: constrained backbone
by mahendra » Mon, 2022-11-14 02:51
0
1,148 by mahendra
Mon, 2022-11-14 02:51
Normal topic Ligand Docking with ROSETTA
by sc19 » Thu, 2022-07-14 01:32
0
234 by sc19
Thu, 2022-07-14 01:34
Normal topic Using abinition to predict a new (previously unsolved) structure.
by ac.research » Mon, 2017-01-09 00:59
0
1,083 by ac.research
Mon, 2017-01-09 00:59
Normal topic metalloprotein ab initio with glutamic acid
by inorgchem » Tue, 2020-06-16 20:45
0
487 by inorgchem
Tue, 2020-06-16 20:45
Normal topic Writing down properties for new atom types
by Corvin » Tue, 2021-01-12 04:30
0
460 by Corvin
Wed, 2021-01-13 04:00
Normal topic Relax in membrane pull my protein out of the membrane
by Martin Floor » Wed, 2022-01-26 07:46
0
474 by Martin Floor
Wed, 2022-01-26 07:46
Normal topic cluster,how to get the statistic data
by MajorID » Wed, 2011-06-08 09:20
0
1,710 by MajorID
Mon, 2014-04-21 06:47
Normal topic Flex_ddG crashes when attempting to move 2 chains (e.g. chains_to_move = A,C)
by jcampecino » Wed, 2020-05-13 12:22
0
679 by jcampecino
Wed, 2020-05-13 12:22
Normal topic Reproduce Robetta's ddg values of interface alanine scan using Rosetta?
by cossio » Mon, 2015-01-19 07:14
0
2,496 by cossio
Mon, 2015-01-19 07:14
Normal topic DDG_monomer ΔΔG question
by asbelx » Fri, 2018-04-20 03:31
0
926 by asbelx
Fri, 2018-04-20 03:33
Normal topic Global Docking with carbohydrates
by ChiauShu » Sat, 2020-08-22 20:16
0
599 by ChiauShu
Sat, 2020-08-22 20:16
Normal topic Creating fragment files for proteins less than 27 aa in length
by Poladu » Tue, 2021-01-26 07:50
0
537 by Poladu
Tue, 2021-01-26 07:50
Normal topic comparative modelling of a complex
by sdh_h » Sun, 2017-12-17 06:07
0
841 by sdh_h
Sun, 2017-12-17 06:07
Normal topic Metal Ion in symmetric design
by tschiex » Wed, 2020-07-08 05:28
0
609 by tschiex
Wed, 2020-07-08 05:28
Normal topic Can remodel really handle multiple insertions in one simulation?
by lanselibai » Sat, 2019-12-28 12:51
0
631 by lanselibai
Sat, 2019-12-28 12:51
Normal topic minimize_ppi.mpi.linuxgccrelease doesn't use jd2?
by e3lm » Tue, 2022-05-17 11:58
0
261 by e3lm
Tue, 2022-05-17 11:58
Normal topic denovo_density don't output a pdb file
by ylwang » Sun, 2018-11-18 17:51
0
785 by ylwang
Sun, 2018-11-18 17:51
Normal topic mp_transform optimize with franklin2019 scoring
by benhardy » Thu, 2020-05-28 08:35
0
836 by benhardy
Thu, 2020-05-28 08:45
Normal topic Remodel's problem in treatment with non-protein residues
by Corvin » Mon, 2021-12-13 09:07
0
381 by Corvin
Mon, 2021-12-13 09:07
Normal topic Patch to impose tetrahedral geometry on backbone O atom
by georg » Thu, 2021-04-08 09:30
0
472 by georg
Thu, 2021-04-08 09:31
Normal topic RemodelMover and Input Pose
by ozyo » Tue, 2020-12-29 09:41
0
581 by ozyo
Tue, 2020-12-29 09:41
Normal topic I need help with cst file the paper: De Novo Computational Design of Retro-Aldol Enzymes
by Wenithor » Thu, 2022-01-06 12:20
0
400 by Wenithor
Thu, 2022-01-06 12:20
Normal topic Pepspec Anchor Dock
by Soler » Fri, 2020-09-18 08:09
0
723 by Soler
Fri, 2020-09-18 08:09
Normal topic Symmetry definition question
by mrconde96 » Sun, 2022-10-02 05:34
0
728 by mrconde96
Sun, 2022-10-02 05:34
Normal topic Flexpepdock I_hb scoring term
by mbakalar » Fri, 2018-08-31 13:05
0
873 by mbakalar
Fri, 2018-08-31 13:06
Normal topic General question regarding ligand-docking
by Alison_Yajie » Thu, 2020-05-07 09:48
0
546 by Alison_Yajie
Thu, 2020-05-07 09:48
Normal topic Modelling of multi-component symmetrical structures
by LanMei » Wed, 2020-10-07 09:58
0
674 by LanMei
Wed, 2020-10-07 09:58
Normal topic Problem with Scoring function and PlaceStub mover
by a-eatemadi@razi... » Sat, 2018-04-07 09:22
0
885 by a-eatemadi@razi...
Sat, 2018-04-07 09:24
Normal topic What is interface_cutoff_distance? And why did my residues outside this value get designed?
by chrisHKL » Fri, 2020-02-28 14:52
0
661 by chrisHKL
Fri, 2020-02-28 14:52
Normal topic clustering output file has few structures
by fabiotrovato » Mon, 2020-08-17 11:37
0
519 by fabiotrovato
Mon, 2020-08-17 11:37
Normal topic Domain insertion with Non-CAA
by mwfranklin » Mon, 2017-01-16 12:30
0
1,468 by mwfranklin
Mon, 2017-01-16 12:30
Normal topic Segment File Gen - no ouput
by CATarr » Wed, 2019-10-09 19:05
0
658 by CATarr
Wed, 2019-10-09 19:05
Normal topic RosettaAntibody - No matching templates for CDR1
by agctomer » Tue, 2021-01-19 22:45
0
569 by agctomer
Tue, 2021-01-19 22:45
Normal topic Generating the 3-mer and 9-mer fragments
by Prasoon » Wed, 2022-02-09 09:04
0
454 by Prasoon
Wed, 2022-02-09 09:04
Normal topic antibody.mpi.linuxgccrelease some antibodies failing to model
by drewaight » Mon, 2020-11-02 17:07
0
795 by drewaight
Mon, 2020-11-02 17:07
Normal topic Rosetta DARc suboptimal dockings
by ddhoyo » Mon, 2021-10-11 06:18
0
364 by ddhoyo
Mon, 2021-10-11 06:18
Normal topic wallpaper symmetry definition file
by aaj » Fri, 2016-02-26 08:40
0
1,169 by aaj
Fri, 2016-02-26 08:40
Normal topic pMHC modelling
by Roberto » Thu, 2022-08-04 07:11
0
195 by Roberto
Thu, 2022-08-04 07:11
Normal topic Interesting scoring performance in flexpepdock against random peptides
by ziqi1234 » Fri, 2017-12-08 07:52
0
863 by ziqi1234
Fri, 2017-12-08 07:52
Normal topic An error with score app
by Genta » Tue, 2019-10-29 18:46
0
1,016 by Genta
Tue, 2019-10-29 18:46
Normal topic Fragment library (vall file) from Robetta?
by alex » Sun, 2017-02-19 08:12
0
1,361 by alex
Sun, 2017-02-19 08:12
Normal topic using piper-flexpepdock
by syntekabio2019 » Thu, 2019-12-12 01:22
0
909 by syntekabio2019
Thu, 2019-12-12 01:22
Normal topic Ab Initio folding with HEM ligand molecule
by jseco » Fri, 2021-03-05 06:49
0
500 by jseco
Mon, 2021-03-08 03:40
Normal topic Dimeric interface redesign
by kjs1728 » Mon, 2022-05-02 21:57
0
252 by kjs1728
Mon, 2022-05-02 21:57
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - Applications