You are here

Rosetta 3 - Applications

Pages

Topic / Topic starter Replies Views Last postsort descending
Normal topic Number of max allowed mutations from WT sequence
by mouung » Fri, 2020-09-04 02:33
2
690 by amorin
Fri, 2021-02-12 08:53
Hot topic CoupledMoves not altering backbone coordinates?
by amorin » Wed, 2021-01-20 11:38
15
1,933 by amorin
Sat, 2021-02-27 20:29
Normal topic antibody H3 modelling protocol for nanobody gives "[ ERROR ] Inaccurate G!" messages
by AlfredoKCL » Sun, 2021-02-28 16:42
2
386 by AlfredoKCL
Mon, 2021-03-01 04:07
Normal topic How to write down a connection between ligand's atom and metal ion from enzyme?
by Corvin » Mon, 2021-02-15 06:54
7
964 by aloshbau
Mon, 2021-03-01 20:06
Normal topic BuildPeptide - Using Phosphorylated and Sulfated Tyrosine
by jlawrie » Thu, 2020-09-03 14:29
1
581 by cryosky
Mon, 2021-03-01 21:37
Normal topic Error from clean_pdb.py
by code_Monkey » Mon, 2021-03-01 17:00
2
377 by code_Monkey
Thu, 2021-03-04 12:14
Normal topic Comparative Modeling Tutorial
by code_Monkey » Thu, 2021-03-04 12:35
1
318 by rmoretti
Fri, 2021-03-05 09:35
Normal topic Ab Initio folding with HEM ligand molecule
by jseco » Fri, 2021-03-05 06:49
0
224 by jseco
Mon, 2021-03-08 03:40
Normal topic Can't generate a cst file to use with ddg_monomer application
by ctqwong » Sat, 2021-03-13 03:53
6
779 by ctqwong
Thu, 2021-03-18 02:04
Normal topic Should I be stripping water molecules from my input structure for Rosetta Design?
by chrisHKL » Wed, 2021-03-24 14:22
1
286 by smlewis
Wed, 2021-03-24 14:59
Normal topic Protein Ensemble RosettaLigand Docking
by sam_dc » Fri, 2021-03-26 10:18
2
398 by sam_dc
Fri, 2021-03-26 12:04
Normal topic Can rosetta generate a centroid model based on the rna sequence?
by yels » Fri, 2021-03-26 04:06
7
719 by yels
Wed, 2021-03-31 18:31
Normal topic How to use base_pair_constraint for RNA as a constraint term?
by yels » Sat, 2021-04-03 01:19
1
279 by everyday847
Sun, 2021-04-04 12:48
Normal topic PDB Clustering
by code_Monkey » Mon, 2021-04-05 10:40
0
213 by code_Monkey
Mon, 2021-04-05 10:40
Normal topic Loop modeling with constraints
by agctomer » Sat, 2021-03-20 03:53
3
589 by agctomer
Thu, 2021-04-08 07:37
Normal topic Patch to impose tetrahedral geometry on backbone O atom
by georg » Thu, 2021-04-08 09:30
0
177 by georg
Thu, 2021-04-08 09:31
Normal topic issues about cstfile in RosettaMatch
by Nicole Deng » Fri, 2020-12-18 05:44
3
760 by He Xiao
Sun, 2021-04-11 19:29
Normal topic RosettaLigand ERROR: Error in core::conformation::check_good_cutpoint_neighbour()
by sam_dc » Thu, 2021-03-25 09:32
2
395 by sam_dc
Mon, 2021-04-12 07:24
Normal topic What is an SS0 predictor?
by ojmel » Fri, 2021-04-02 14:25
0
193 by ojmel
Mon, 2021-04-12 07:50
Normal topic GeneralizedKIC loop closure error
by chenna » Sat, 2021-04-10 00:21
2
327 by chenna
Mon, 2021-04-12 22:08
Normal topic r_frag_quality
by ii_cnr » Mon, 2021-04-12 03:06
2
293 by ii_cnr
Mon, 2021-04-12 23:44
Normal topic multi ligand docking using rosetta script
by syntekabio2019 » Tue, 2021-04-13 19:31
0
205 by syntekabio2019
Tue, 2021-04-13 19:31
Normal topic Docking Analysis and Metrics in RosettaLigand.
by sam_dc » Tue, 2021-04-20 03:54
1
325 by rmoretti
Tue, 2021-04-20 13:27
Normal topic Element 'trRosettaProtocol': This element is not expected.
by csaylan » Tue, 2021-04-20 14:21
2
322 by csaylan
Tue, 2021-04-20 16:13
Normal topic Filling the missing loops
by code_Monkey » Tue, 2021-04-27 07:44
2
287 by code_Monkey
Tue, 2021-04-27 12:11
Normal topic Generalized KIC loop closure affects downstream residues without perturbations
by chenna » Mon, 2021-04-26 02:16
2
298 by chenna
Wed, 2021-04-28 07:18
Normal topic RosettaCM/hybridize
by kywei » Wed, 2021-04-28 09:56
1
239 by vmulligan
Wed, 2021-04-28 12:59
Normal topic ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator>
by DGR95 » Fri, 2021-04-16 19:26
4
499 by DGR95
Wed, 2021-04-28 16:13
Normal topic hpatch commands and how to identify patches
by Bianca Oliva » Thu, 2021-04-29 04:02
0
202 by Bianca Oliva
Thu, 2021-04-29 04:02
Normal topic Help with enzyme design files
by Wenithor » Thu, 2021-04-29 10:33
1
241 by rmoretti
Thu, 2021-04-29 10:44
Normal topic Score Functions for Ligand-protein Docking
by ziruiw » Sun, 2021-04-25 13:41
4
522 by ziruiw
Fri, 2021-04-30 12:01
Normal topic Thread target sequence
by duz » Thu, 2021-04-01 10:09
4
525 by duz
Mon, 2021-05-03 07:50
Normal topic trRosetta protocol Segmentation Fault
by nc-ring » Wed, 2021-04-28 11:57
5
514 by nc-ring
Tue, 2021-05-04 12:26
Normal topic Disulfide Bonds in Loop Modeling
by code_Monkey » Mon, 2021-05-03 08:27
2
298 by code_Monkey
Thu, 2021-05-06 07:14
Normal topic Issues with modifying dock.xml for multiple ligand docking
by DGR95 » Fri, 2021-05-14 12:51
0
173 by DGR95
Fri, 2021-05-14 12:51
Normal topic residue_energy_breakdown of a protein-ligand complex.
by sam_dc » Tue, 2021-05-18 04:45
1
243 by rmoretti
Tue, 2021-05-18 07:21
Normal topic FastRelax Refinement severe clashes
by Victor Tobiasson » Thu, 2021-05-20 06:55
0
180 by Victor Tobiasson
Thu, 2021-05-20 06:55
Normal topic Blast error for rosetta antibody: No argument value given for Query file
by dngusdnr1 » Tue, 2021-06-08 17:30
1
188 by taylorjones
Wed, 2021-06-09 16:38
Normal topic Fastsaxs
by Pernille » Mon, 2013-07-22 07:29
14
32,892 by rmoretti
Mon, 2021-06-14 12:56
Normal topic different value of score from rna_denovo and rna_score?
by yikanzhang » Wed, 2021-02-03 07:17
1
270 by CameronJA
Tue, 2021-06-15 20:02
Normal topic NCAA attached at two points
by tsztain » Wed, 2021-06-16 15:20
3
285 by matteoferla
Sat, 2021-06-19 03:07
Normal topic How to Perform point mutations with NCAA
by Subhrodeep Saha » Tue, 2021-06-22 02:05
1
174 by vmulligan
Thu, 2021-06-24 13:23
Normal topic setup_RosettaCM.py
by browns02 » Mon, 2021-06-28 07:13
2
190 by browns02
Tue, 2021-06-29 11:41
Normal topic How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior )
by asbelx » Sat, 2019-06-08 00:07
3
1,213 by happycaapi
Tue, 2021-06-29 15:35
Normal topic Repacker vs minimization
by Elijah_Hix » Fri, 2021-07-02 07:25
0
114 by Elijah_Hix
Fri, 2021-07-02 07:25
Normal topic D-amino acids tripeptide docking.
by sam_dc » Sat, 2021-07-03 08:48
2
230 by vmulligan
Tue, 2021-07-06 08:27
Normal topic rosetta_cm segfault
by browns02 » Fri, 2021-07-09 13:35
2
193 by rmoretti
Fri, 2021-07-09 15:05
Normal topic Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring
by brspurri » Wed, 2017-03-29 13:19
7
3,329 by matteoferla
Mon, 2021-07-19 06:13
Normal topic FlexPepDock ab initio: behavior without fragment files
by nrollins » Mon, 2021-07-26 14:16
0
123 by nrollins
Mon, 2021-07-26 14:16
Normal topic FlexPepDock bug? Constraints do not appear in total_score?
by nrollins » Mon, 2021-07-26 14:29
0
140 by nrollins
Mon, 2021-07-26 14:29
Normal topic Stepwise Monte Carlo - errors with ResidueTypeSet and Disulfides
by user42 » Wed, 2021-07-21 20:34
1
190 by everyday847
Fri, 2021-07-30 13:26
Normal topic clashes created with enzdes
by listofdina » Mon, 2021-08-02 06:51
0
151 by listofdina
Mon, 2021-08-02 06:51
Normal topic Topobuilder segmentation fault
by tatsiana.bylund » Mon, 2021-08-09 07:10
0
184 by tatsiana.bylund
Mon, 2021-08-09 07:10
Normal topic duplex RNA
by amir_tagh » Thu, 2021-08-05 06:34
1
197 by everyday847
Mon, 2021-08-16 10:43
Normal topic Rosetta Ligand Ensemble
by malfonsoprieto » Wed, 2021-05-26 10:21
3
448 by vizcarra
Thu, 2021-08-26 10:16
Normal topic ERROR: Unable to fill in missing atoms.
by mieczyslaw » Tue, 2020-10-20 09:43
6
1,750 by soumyo88
Thu, 2021-08-26 14:25
Normal topic Missing atoms and cannot find atom pose when refining ligand position with EM density
by BuddySphinx » Mon, 2018-12-31 16:22
2
1,709 by e3lm
Tue, 2021-09-14 10:02
Normal topic Python2 script in Rosetta3.13
by ddhoyo » Wed, 2021-09-15 04:05
1
163 by matteoferla
Wed, 2021-09-15 06:04
Normal topic Error reading in/out glycosylated silent file - "Can't create a polymer bond after residue due to incompatible type"
by amorin » Mon, 2021-09-27 12:16
0
94 by amorin
Mon, 2021-09-27 12:16
Normal topic antibody - sequence position requested was 0
by jremmel » Mon, 2021-09-27 12:26
1
98 by nannemdp
Mon, 2021-09-27 14:22
Normal topic Symmetry definition file versions
by Jeff Qu » Tue, 2021-09-28 09:53
0
76 by Jeff Qu
Tue, 2021-09-28 09:53
Normal topic trRosetta - Nan occuring in Hbond calculation
by y_atsmonraz » Mon, 2021-10-04 09:16
0
56 by y_atsmonraz
Mon, 2021-10-04 09:16
Normal topic RoseTTaFold
by ozsolomon » Thu, 2021-10-07 05:27
2
68 by ozsolomon
Thu, 2021-10-07 14:25
Normal topic Linker Building in scFv
by sam_dc » Sat, 2021-10-09 05:38
0
52 by sam_dc
Sat, 2021-10-09 05:38
Normal topic Rosetta DARc suboptimal dockings
by ddhoyo » Mon, 2021-10-11 06:18
0
43 by ddhoyo
Mon, 2021-10-11 06:18
Normal topic Strong bias in sampling observed in RosettaDock
by chenna » Thu, 2020-08-27 22:23
2
566 by chenna
Tue, 2021-10-12 20:51
Normal topic C-termini remodelling of dimeric structure removes second chain
by LeonhardJS » Wed, 2021-10-13 06:23
0
51 by LeonhardJS
Wed, 2021-10-13 06:23
Normal topic building a protein-dna homology model via cm_rosetta
by y_atsmonraz » Wed, 2021-10-20 23:11
3
45 by matteoferla
Mon, 2021-10-25 03:17

Pages

New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - Applications