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Rosetta 3 - Applications
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homology modeling- Error: length mismatch between sequence and alignment. by pdbb » Mon, 2012-10-01 07:57 |
2 |
4,125 |
by pdbb Mon, 2014-04-21 06:47 |
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Problem with hotspot constraints. by jarek » Wed, 2012-10-17 03:22 |
6 |
5,125 |
by xfliu Mon, 2014-04-21 06:47 |
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membrane ab initio modeling application with constraints by ytao » Thu, 2012-11-08 11:56 |
2 |
3,949 |
by ytao Mon, 2014-04-21 06:47 |
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protein docking failed by albumns » Thu, 2012-11-08 02:59 |
6 |
5,579 |
by rmoretti Mon, 2014-04-21 06:47 |
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segmentation fault after core.kinematics.FoldTree in homology modeling by pdbb » Mon, 2012-10-08 14:27 |
7 |
6,893 |
by rmoretti Mon, 2014-04-21 06:47 |
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Enzyme design output silent file and score file by deltag » Fri, 2012-09-28 13:07 |
1 |
2,206 |
by rmoretti Mon, 2014-04-21 06:47 |
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Fixbb Multiple Resfiles by protos_heis » Mon, 2012-10-15 10:34 |
18 |
13,657 |
by protos_heis Mon, 2014-04-21 06:47 |
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fix the left part doesn't work by albumns » Wed, 2012-11-07 00:02 |
9 |
6,275 |
by albumns Mon, 2014-04-21 06:47 |
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homology modeling with end extension by fred » Mon, 2012-10-08 14:19 |
19 |
16,064 |
by xpzhang Mon, 2014-04-21 06:47 |
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enzyme design and output_matchres_only by petrikigor » Wed, 2012-10-24 18:45 |
6 |
4,675 |
by petrikigor Mon, 2014-04-21 06:47 |
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homology modelling with DNA by zadie1118 » Fri, 2012-09-28 06:35 |
4 |
5,274 |
by rmoretti Mon, 2014-04-21 06:47 |
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AbinitioRelax usage (3.4) by atruong » Fri, 2012-10-12 13:38 |
12 |
9,997 |
by atruong Mon, 2014-04-21 06:47 |
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Multiple Chain Comparative Modeling - End result is not even close to template structure by eskici » Wed, 2012-08-29 08:09 |
2 |
3,510 |
by eskici Mon, 2014-04-21 06:47 |
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fixbb design using damped LJ by Anonymous » Fri, 2012-08-17 03:51 |
8 |
7,184 |
by Anonymous Mon, 2014-04-21 06:47 |
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Folding and Docking using Symmetry by danielles » Wed, 2012-09-12 11:32 |
0 |
1,723 |
by danielles Mon, 2014-04-21 06:47 |
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Problems running pmut in parallel with openmpi by RMJ » Fri, 2012-09-21 06:25 |
2 |
3,676 |
by RMJ Mon, 2014-04-21 06:47 |
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Comparative modeling stops with "no more batches to process... " / no output by eskici » Tue, 2012-08-28 12:13 |
6 |
5,715 |
by eskici Mon, 2014-04-21 06:47 |
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Abinitio (3.4) Error: no fragment to compute secondary structure by skovacs » Tue, 2012-09-18 13:49 |
6 |
6,847 |
by skovacs Mon, 2014-04-21 06:47 |
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membrane score weights by ytao » Sat, 2012-09-08 06:56 |
2 |
2,713 |
by ytao Mon, 2014-04-21 06:47 |
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Rosetta scoring by Dimitrov » Thu, 2012-09-20 01:54 |
7 |
9,026 |
by attesor Mon, 2014-04-21 06:47 |
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ddg dG_separate by gw » Wed, 2012-08-22 11:25 |
5 |
5,463 |
by smlewis Mon, 2014-04-21 06:47 |
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Backrub Params Files by protos_heis » Tue, 2012-09-18 06:15 |
4 |
4,699 |
by protos_heis Mon, 2014-04-21 06:47 |
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make fragment by zadie1118 » Thu, 2012-08-30 07:45 |
3 |
4,717 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaDock - Constraints File by edpryor » Wed, 2012-09-19 06:23 |
9 |
11,649 |
by joeg Mon, 2014-04-21 06:47 |
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FlexPepDock in RosettaScripts keeps running by gw » Tue, 2012-08-21 12:31 |
1 |
2,409 |
by smlewis Mon, 2014-04-21 06:47 |
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Flexible peptide docking with flexible receptor backbone by tevang » Fri, 2012-09-14 11:18 |
1 |
2,543 |
by smlewis Mon, 2014-04-21 06:47 |
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ndruns and nstruct in fixbb by Anonymous » Tue, 2012-08-07 01:52 |
5 |
5,691 |
by Anonymous Mon, 2014-04-21 06:47 |
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"Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application by xfliu » Thu, 2012-06-21 09:07 |
4 |
4,658 |
by smlewis Mon, 2014-04-21 06:47 |
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Over-docking with FlexPepDock by gw » Fri, 2012-07-20 13:10 |
5 |
5,150 |
by rmoretti Mon, 2014-04-21 06:47 |
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Changing scoring function for fixbb protocol by mdyini » Sat, 2012-07-07 18:43 |
4 |
3,790 |
by mdyini Mon, 2014-04-21 06:47 |
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DDG monomer and backrub motions by yperez » Thu, 2012-06-21 08:10 |
2 |
3,082 |
by yperez Mon, 2014-04-21 06:47 |
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Docking structures with ligands in cryo-EM maps by galushin » Wed, 2012-07-11 12:40 |
1 |
4,330 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Using MoveMap within Relax Application? by m_grisewood » Mon, 2012-08-13 12:21 |
5 |
6,531 |
by m_grisewood Mon, 2014-04-21 06:47 |
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RosettaVIP: ERROR: seqpos <= size() by Anonymous » Thu, 2012-07-26 07:30 |
5 |
5,978 |
by Anonymous Mon, 2014-04-21 06:47 |
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RosettaSurface in 3.4? by skovacs » Tue, 2012-07-10 16:02 |
2 |
2,749 |
by mpacella Mon, 2014-04-21 06:47 |
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relax constraints not minimized by m_grisewood » Fri, 2012-08-10 08:31 |
2 |
3,375 |
by m_grisewood Mon, 2014-04-21 06:47 |
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relax VS. backrub by jiongzhang » Mon, 2012-07-02 14:52 |
1 |
2,346 |
by smlewis Mon, 2014-04-21 06:47 |
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how to repacking loop while freezing other residues? by jfhuang » Wed, 2012-07-25 06:59 |
10 |
7,954 |
by jfhuang Mon, 2014-04-21 06:47 |
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where to look for positive sign for solution in mr-rosetta3.4? by lchen » Tue, 2012-07-10 09:38 |
2 |
2,809 |
by lchen Mon, 2014-04-21 06:47 |
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ddg_monomer conformational search... by yperez » Wed, 2012-05-09 11:10 |
5 |
4,466 |
by yperez Mon, 2014-04-21 06:47 |
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a question about ligand docking by yzhou » Wed, 2012-05-30 18:57 |
5 |
4,348 |
by yzhou Mon, 2014-04-21 06:47 |
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rosetta3.4 fragment file problem by David Hoover » Wed, 2012-05-16 14:42 |
4 |
3,817 |
by dgront Mon, 2014-04-21 06:47 |
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Incorrect Jump being set in RosettaScripts docking mover by weehee » Fri, 2012-06-08 10:23 |
6 |
7,000 |
by rmoretti Mon, 2014-04-21 06:47 |
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Rosetta DNA - Protein-DNA scoring function and binding energy by tanoramb » Tue, 2012-05-08 14:00 |
1 |
4,313 |
by smlewis Mon, 2014-04-21 06:47 |
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how to pick fragments for a transmembrane protein by tevang » Mon, 2012-05-28 06:52 |
1 |
2,062 |
by tevang Mon, 2014-04-21 06:47 |
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modeling missing linker in a protein by Isaure de Beauchene » Fri, 2012-05-11 10:13 |
1 |
3,207 |
by smlewis Mon, 2014-04-21 06:47 |
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Where is the RosettaHoles2 executable? by lah435 » Mon, 2012-06-04 15:15 |
11 |
7,772 |
by smlewis Mon, 2014-04-21 06:47 |
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Ligand dock analysis by sacch » Tue, 2012-05-22 01:20 |
3 |
3,551 |
by glemmon Mon, 2014-04-21 06:47 |
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Flexible docking using rosetta density-fitting for DNA by helm » Thu, 2012-06-14 23:43 |
1 |
2,528 |
by smlewis Mon, 2014-04-21 06:47 |
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null mutation with ddg_monomer by fred » Fri, 2012-05-11 07:16 |
4 |
3,783 |
by fred Mon, 2014-04-21 06:47 |
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Holes output interpretation by lah435 » Mon, 2012-06-04 15:02 |
1 |
2,264 |
by smlewis Mon, 2014-04-21 06:47 |
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ligand dock question by sacch » Sun, 2012-05-20 19:49 |
4 |
4,070 |
by sacch Mon, 2014-04-21 06:47 |
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Fold and Dock - chains not in contact by arthuc01 » Wed, 2012-06-13 01:45 |
2 |
2,795 |
by smlewis Mon, 2014-04-21 06:47 |
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error with fragment_picker.linuxgccrelease by jiongzhang » Tue, 2012-04-17 09:07 |
3 |
3,209 |
by smlewis Mon, 2014-04-21 06:47 |
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Single Strand DNA (ssDNA) 3D structure prediction by mkoohim » Fri, 2012-04-06 00:52 |
4 |
13,830 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains by ahonegger » Tue, 2012-04-24 01:34 |
3 |
3,845 |
by ahonegger Mon, 2014-04-21 06:47 |
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ddg_monomer problem by deltag » Wed, 2012-04-04 07:53 |
11 |
11,129 |
by smlewis Mon, 2014-04-21 06:47 |
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analysis of clustering by loris.moretti » Thu, 2012-04-19 02:52 |
3 |
6,616 |
by rmoretti Mon, 2014-04-21 06:47 |
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Symmetry Docking and Clustering with Ligands by skovacs » Wed, 2012-03-07 16:46 |
9 |
10,780 |
by Anonymous Mon, 2014-04-21 06:47 |
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how to run my openmp programe in rosetta3.3? by lihowe » Mon, 2012-02-27 23:43 |
1 |
2,216 |
by smlewis Mon, 2014-04-21 06:47 |
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Residue_energy_breakdown utility by cn » Sat, 2012-03-17 06:11 |
3 |
3,246 |
by cn Mon, 2014-04-21 06:47 |
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FloppyTail bugs for N-terminal tails by Dave C » Thu, 2012-03-01 13:06 |
18 |
14,357 |
by bbarryabc Mon, 2014-04-21 06:47 |
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docking in rosetta 3.3 by Ammu » Thu, 2012-03-15 12:03 |
6 |
5,454 |
by smlewis Mon, 2014-04-21 06:47 |
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ddG Monomer Low Res Protocol Convergence by harshkhare » Thu, 2012-03-01 00:45 |
2 |
3,537 |
by harshkhare Mon, 2014-04-21 06:47 |
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Surface accessible residue as a constraint. by arthuc01 » Fri, 2012-03-09 23:27 |
1 |
2,066 |
by smlewis Mon, 2014-04-21 06:47 |
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fragment_picker bug by David Hoover » Wed, 2012-02-29 11:43 |
0 |
1,631 |
by David Hoover Mon, 2014-04-21 06:47 |
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pair energies across interface by irini » Fri, 2012-02-10 09:17 |
5 |
4,418 |
by Anonymous Mon, 2014-04-21 06:47 |
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Generate fragment locally by deltag » Wed, 2012-02-01 06:26 |
2 |
3,206 |
by deltag Mon, 2014-04-21 06:47 |
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Difference between relax and mimimize_with_cst by basvandenberg » Thu, 2012-02-09 00:16 |
1 |
2,585 |
by rmoretti Mon, 2014-04-21 06:47 |
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loopmodel issue by chiendarret » Fri, 2012-01-27 00:51 |
1 |
2,859 |
by smlewis Mon, 2014-04-21 06:47 |
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Does linker modeling exist? by aroop » Wed, 2012-02-22 07:34 |
5 |
4,853 |
by smlewis Mon, 2014-04-21 06:47 |
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Relax a structure with >1 copy of a modified residue fails [Solved] by franfdez » Wed, 2012-02-08 00:47 |
6 |
5,876 |
by franfdez Mon, 2014-04-21 06:47 |
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ab initio protein prediction using homologs by justin » Mon, 2012-02-13 07:52 |
5 |
5,171 |
by justin Mon, 2014-04-21 06:47 |
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parameterizing new residues by chiendarret » Fri, 2012-02-03 22:59 |
3 |
7,160 |
by rmoretti Mon, 2014-04-21 06:47 |
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problems in InterfaceAnalyzer analysis by chenchaozhao » Fri, 2011-12-02 23:36 |
9 |
7,738 |
by smlewis Mon, 2014-04-21 06:47 |
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How do you use two patches simulataneously with ab initio folding? by smiruthi » Wed, 2011-12-21 15:24 |
5 |
4,816 |
by wangyr Mon, 2014-04-21 06:47 |
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Don't know how to extract scores from a RNA de novo silent file. by Basantab » Wed, 2011-11-23 17:27 |
10 |
9,062 |
by smlewis Mon, 2014-04-21 06:47 |
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RMS determination using Rosetta 3.3 by adraney » Thu, 2011-12-08 12:44 |
2 |
3,022 |
by mark.wilson Mon, 2014-04-21 06:47 |
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Representing Cross-linked nitrogens by jjlee2 » Sat, 2011-11-26 18:42 |
1 |
2,248 |
by smlewis Mon, 2014-04-21 06:47 |
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Garbled Ligands from docking_protocol by skovacs » Tue, 2011-12-20 07:55 |
21 |
17,149 |
by skovacs Mon, 2014-04-21 06:47 |
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rosetta scores for mutated structures by harshkhare » Wed, 2011-11-23 09:30 |
1 |
2,573 |
by rmoretti Mon, 2014-04-21 06:47 |
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Idealize in Rosetta 3.3 by jadolfbr » Tue, 2011-12-06 11:59 |
2 |
2,923 |
by jadolfbr Mon, 2014-04-21 06:47 |
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limit_cluster_size default value by sacch » Thu, 2011-11-24 17:57 |
2 |
2,619 |
by sacch Mon, 2014-04-21 06:47 |
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ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly' by smiruthi » Mon, 2011-12-12 14:27 |
1 |
2,570 |
by rmoretti Mon, 2014-04-21 06:47 |
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cluster.mpi running in MPI mode? by sacch » Fri, 2011-11-18 23:30 |
2 |
4,102 |
by sacch Mon, 2014-04-21 06:47 |
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ddg with ligands by bhaines1 » Mon, 2011-12-05 14:32 |
4 |
4,901 |
by rmoretti Mon, 2014-04-21 06:47 |
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proline patching problem by xun » Tue, 2012-01-03 11:15 |
3 |
3,581 |
by xun Mon, 2014-04-21 06:47 |
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Runnig Abinitio & score app by Gaurav_kumar » Wed, 2011-11-23 20:45 |
9 |
10,739 |
by rmoretti Mon, 2014-04-21 06:47 |
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Run AbinitioRelax (rosetta 3.3) on cluster by grisha » Mon, 2011-12-12 14:20 |
18 |
16,090 |
by grisha Mon, 2014-04-21 06:47 |
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loop modeling during enzyme design? by lzx32 » Wed, 2011-11-16 00:30 |
6 |
5,273 |
by lzx32 Mon, 2014-04-21 06:47 |
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[SOLVED] swamped memory by fred » Fri, 2011-09-16 08:19 |
13 |
10,866 |
by fred Mon, 2014-04-21 06:47 |
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Enzyme design with variable CST blocks possible? by petrikigor » Thu, 2011-10-06 11:24 |
6 |
6,476 |
by petrikigor Mon, 2014-04-21 06:47 |
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InterfaceAnalyzer -resfile by gw » Wed, 2011-11-02 16:01 |
1 |
2,668 |
by smlewis Mon, 2014-04-21 06:47 |
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AbinitioRelax Disulfide Bonds are not being retained by brspurri » Wed, 2011-09-28 13:55 |
1 |
4,114 |
by parmef Mon, 2014-04-21 06:47 |
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Error while running Enzyme Design by saxen » Fri, 2011-10-21 15:46 |
11 |
9,863 |
by akpole Mon, 2014-04-21 06:47 |
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fragment_picker with fasta only by gw » Tue, 2011-11-15 13:20 |
3 |
3,998 |
by gw Mon, 2014-04-21 06:47 |
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RosettaRemodel by gw » Wed, 2011-09-14 13:24 |
2 |
3,275 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg_monomer.mpi by gw » Thu, 2011-10-27 16:45 |
3 |
3,770 |
by smlewis Mon, 2014-04-21 06:47 |
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minimize_with_cst problems (ddg_monomer) by alexn » Tue, 2011-09-20 13:46 |
2 |
3,237 |
by alexn Mon, 2014-04-21 06:47 |
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Structure determination combining X-ray diffraction data and NMR chemical shift by MajorID » Mon, 2011-10-17 19:55 |
2 |
3,469 |
by rmoretti Mon, 2014-04-21 06:47 |
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