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Rosetta 3 - Applications

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Topic / Topic startersort descending Replies Views Last post
Normal topic Topobuilder segmentation fault
by tatsiana.bylund » Mon, 2021-08-09 07:10
0
184 by tatsiana.bylund
Mon, 2021-08-09 07:10
Normal topic Total score problems with high-res ddg_monomer
by jklesmith » Tue, 2015-03-10 15:54
2
2,521 by jennifer
Fri, 2015-03-27 05:56
Normal topic Translate mover chain X doesnot exist.
by surya » Thu, 2020-07-09 08:36
6
1,476 by rmoretti
Tue, 2020-07-14 10:54
Normal topic Transmembrane helix fold-and-dock?
by sarah_b » Tue, 2020-05-12 02:09
3
1,053 by jkleman
Tue, 2020-05-19 15:02
Normal topic Trouble enforcing a disulfide in loop building
by chelsell » Sun, 2015-05-10 16:31
2
2,642 by chelsell
Wed, 2015-05-27 14:36
Normal topic trouble in floppytail modelling
by ytao » Thu, 2013-06-27 13:15
1
1,856 by ytao
Mon, 2014-04-21 06:48
Normal topic Trouble running Enzyme Design application
by danaitop » Thu, 2016-08-11 13:34
2
1,831 by rmoretti
Mon, 2016-09-05 11:10
Normal topic Trouble running MPI docking protocol, please help!
by Rob_Barringer » Tue, 2020-08-18 06:40
2
978 by Rob_Barringer
Fri, 2020-09-25 05:45
Normal topic trRosetta - Nan occuring in Hbond calculation
by y_atsmonraz » Mon, 2021-10-04 09:16
0
56 by y_atsmonraz
Mon, 2021-10-04 09:16
Normal topic trRosetta protocol Segmentation Fault
by nc-ring » Wed, 2021-04-28 11:57
5
514 by nc-ring
Tue, 2021-05-04 12:26
Normal topic Two questions on the RosettaScripts flexbb-interfacedesign.xml
by johnnytam100 » Fri, 2019-03-15 04:54
1
945 by rmoretti
Fri, 2019-03-29 09:58
Normal topic Unable to run Rosetta LoopModeling application
by BDBorrillo » Tue, 2011-07-19 14:06
2
4,219 by BDBorrillo
Mon, 2014-04-21 06:47
Normal topic Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking)
by snorp » Mon, 2014-04-14 13:01
2
2,977 by jadolfbr
Mon, 2014-05-12 10:41
Normal topic Unable to understand fragment picking tutorial points.
by Danielsebas » Thu, 2019-09-05 03:44
4
1,448 by danpf
Fri, 2019-09-06 11:29
Normal topic Undesirable behaviour of PoseFromSFRBuilder regarding Hydrogen atoms
by Corvin » Wed, 2020-12-02 04:00
1
400 by rmoretti
Wed, 2020-12-02 07:27
Normal topic Unexpected Error with RosettaCM -
by terry » Fri, 2019-02-22 14:26
1
2,165 by rmoretti
Fri, 2019-03-29 12:25
Normal topic UnfoldedStateEnergyCalculator MPI Error
by colin.walsh.brown » Mon, 2017-11-13 09:43
1
1,143 by smlewis
Mon, 2017-11-13 10:43
Normal topic Up to date Vall database
by JadAbbass » Sat, 2013-06-29 10:35
3
4,381 by rmoretti
Tue, 2017-06-20 09:02
Hot topic usage of score3
by Run » Sat, 2013-09-28 02:06
16
12,766 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Usage of the TaskOperations "RestrictToCDRsAndNeighbors"
by johnnytam100 » Wed, 2019-04-10 02:58
1
849 by rmoretti
Wed, 2019-07-10 10:10
Normal topic Use "loopmodel.linuxgccrelease" CCD to build missing residue positions
by lanselibai » Sun, 2014-10-12 09:00
2
2,564 by lanselibai
Mon, 2014-10-13 10:10
Normal topic Use membrane or non-membrane weights in RosettaCM for a hexon in virus capsid?
by lanselibai » Sat, 2020-04-11 02:10
0
450 by lanselibai
Sat, 2020-04-11 02:10
Normal topic Use NMR ensemble in protein-protein docking?
by cossio » Sun, 2015-09-13 07:57
2
2,189 by cossio
Tue, 2015-09-15 12:48
Normal topic Using abinition to predict a new (previously unsolved) structure.
by ac.research » Mon, 2017-01-09 00:59
0
877 by ac.research
Mon, 2017-01-09 00:59
Normal topic using DARC in rosetta
by syntekabio2019 » Thu, 2019-12-12 01:27
0
520 by syntekabio2019
Thu, 2019-12-12 01:27
Normal topic Using different number of 9-mers (UPDATED)
by JadAbbass » Mon, 2017-08-28 07:20
1
1,224 by rmoretti
Mon, 2017-09-04 10:33
Normal topic Using MoveMap within Relax Application?
by m_grisewood » Mon, 2012-08-13 12:21
5
5,496 by m_grisewood
Mon, 2014-04-21 06:47
Normal topic using piper-flexpepdock
by syntekabio2019 » Thu, 2019-12-12 01:22
0
603 by syntekabio2019
Thu, 2019-12-12 01:22
Normal topic Using residue patches in AbinitioRelax
by kent » Fri, 2018-11-02 11:19
1
1,083 by rmoretti
Wed, 2018-11-21 15:40
Normal topic Using Rmsd RosettaScripts filter with alignment files
by bjharris » Sun, 2020-11-08 15:51
1
395 by rmoretti
Sun, 2020-11-08 18:56
Normal topic Using Rosetta Docking for nucleic acids
by Adrien Guilhot » Thu, 2011-04-28 06:16
3
3,926 by Adrien Guilhot
Mon, 2014-04-21 06:47
Normal topic using Rosetta to compute pH dependent binding?
by JuliusSu » Sun, 2014-06-15 20:28
3
3,279 by rmoretti
Tue, 2014-06-17 08:51
Normal topic variable length fragments for Ab initio
by attesor » Wed, 2015-07-01 06:13
7
4,995 by rmoretti
Tue, 2015-08-18 16:47
Normal topic very good I_sc values (if not too good)
by attesor » Tue, 2015-11-03 03:30
2
2,190 by attesor
Tue, 2015-11-17 07:36
Normal topic VH-VL Orientation in antibody
by sujigeorge1979 » Mon, 2019-06-17 01:23
1
859 by jeliazkov
Mon, 2019-06-17 06:03
Normal topic wallpaper symmetry definition file
by aaj » Fri, 2016-02-26 08:40
0
960 by aaj
Fri, 2016-02-26 08:40
Normal topic Warning messages in Interface analyzer output
by Pernille » Wed, 2015-03-25 00:53
4
3,255 by rmoretti
Tue, 2015-03-31 08:20
Normal topic Warning: Fold tree is not set properly for density scoring
by ahansel » Mon, 2020-07-13 10:50
1
561 by danpf
Tue, 2020-07-14 10:27
Normal topic Warnings during relax
by cossio » Thu, 2018-10-11 14:42
2
1,614 by rmoretti
Mon, 2019-11-04 13:56
Normal topic Weighted scores??
by sizhang » Wed, 2018-12-05 15:22
0
565 by sizhang
Wed, 2018-12-05 15:22
Normal topic weights for pH_protocol
by fmerino » Wed, 2017-04-26 07:14
1
1,354 by rmoretti
Thu, 2017-04-27 07:10
Normal topic What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"?
by lanselibai » Fri, 2014-10-17 06:06
3
19,950 by rmoretti
Fri, 2014-10-17 10:17
Normal topic what does initialize_rigid_body_dofs do?
by attesor » Mon, 2015-10-26 05:12
3
2,853 by rmoretti
Tue, 2015-11-10 11:35
Normal topic What is a rational minimal value for the "-nstruct" option
by Sunyp_IM » Fri, 2020-05-22 01:28
3
977 by nannemdp
Sun, 2020-05-24 14:46
Normal topic What is an SS0 predictor?
by ojmel » Fri, 2021-04-02 14:25
0
193 by ojmel
Mon, 2021-04-12 07:50
Normal topic What is interface_cutoff_distance? And why did my residues outside this value get designed?
by chrisHKL » Fri, 2020-02-28 14:52
0
401 by chrisHKL
Fri, 2020-02-28 14:52
Normal topic What means "[ ERROR ] TIME_STAMP: AbrelaxMover: finished ...NO_BATCH S_0001."
by Corvin » Thu, 2020-04-02 00:16
0
457 by Corvin
Thu, 2020-04-02 00:16
Normal topic When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error
by Martin Floor » Thu, 2020-09-17 06:01
4
1,028 by Martin Floor
Tue, 2020-09-22 00:48
Normal topic where is generate_ligens.linuxgccrelease?
by Nicole Deng » Thu, 2020-12-03 00:00
2
573 by Nicole Deng
Fri, 2020-12-18 00:28
Normal topic where is pdb2vall.py
by tevang » Thu, 2013-01-24 13:35
7
5,185 by dktest
Mon, 2014-04-21 06:47
Normal topic Where is the RosettaHoles2 executable?
by lah435 » Mon, 2012-06-04 15:15
11
6,188 by smlewis
Mon, 2014-04-21 06:47
Normal topic where to look for positive sign for solution in mr-rosetta3.4?
by lchen » Tue, 2012-07-10 09:38
2
2,342 by lchen
Mon, 2014-04-21 06:47
Normal topic Why do non proten ligands get a very high score in kinematic loop modeling/ in general?
by a_s_a » Wed, 2011-06-15 00:03
8
5,712 by a_s_a
Mon, 2014-04-21 06:47
Normal topic Why is proline hydroxylated?
by kwonglynn » Tue, 2013-06-25 02:38
3
4,106 by rmoretti
Mon, 2014-04-21 06:48
Normal topic why is talaris2014 scoring fuction not used with ligand docking?
by banshee » Fri, 2016-09-09 01:19
1
1,455 by rmoretti
Fri, 2016-09-09 07:47
Normal topic Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file?
by lanselibai » Sun, 2014-11-16 10:26
3
2,657 by G Mustafa
Thu, 2018-10-18 05:31
Normal topic Write error during saving of PDB-file after working with it in the Rosetta through Unix terminal
by Corvin » Thu, 2019-04-25 01:20
2
1,184 by Corvin
Wed, 2019-06-12 00:04
Normal topic Write one's own constraint type
by djpittdj » Thu, 2012-11-08 12:29
7
4,901 by smlewis
Mon, 2014-04-21 06:47
Normal topic Writing down properties for new atom types
by Corvin » Tue, 2021-01-12 04:30
0
212 by Corvin
Wed, 2021-01-13 04:00
Normal topic xyzVector error in Enzyme design
by ajmbarbosa » Tue, 2016-01-05 09:46
3
2,994 by rmoretti
Fri, 2016-06-17 10:36
Normal topic Zero residues error in docking
by cjy318 » Tue, 2020-07-28 19:47
0
392 by cjy318
Tue, 2020-07-28 19:47
Normal topic zero standard deviation of I_sc in protein-protein docking
by rohi » Fri, 2020-07-03 22:19
0
342 by rohi
Fri, 2020-07-03 22:20
Normal topic [Solved] Resetting a pose with RigidBodyTransMover
by bjharris » Wed, 2021-01-13 14:01
1
359 by bjharris
Fri, 2021-01-22 17:34
Normal topic [Solved] RosettaAntibody3 - Grafting step is failing to detect H3 from the input sequence
by brspurri » Mon, 2021-01-04 16:46
1
443 by brspurri
Mon, 2021-01-18 18:14
Normal topic [SOLVED] swamped memory
by fred » Fri, 2011-09-16 08:19
13
8,503 by fred
Mon, 2014-04-21 06:47
Normal topic [SOLVED]core.io.silent: [ WARNING ] ...
by fred » Wed, 2011-10-05 07:38
8
5,663 by fred
Mon, 2014-04-21 06:47
Normal topic [TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed
by tevang » Wed, 2013-04-10 15:07
5
3,382 by rmoretti
Mon, 2014-04-21 06:47
Normal topic  The error of InterfaceAnalyzer
by asbelx » Thu, 2017-12-21 19:04
3
2,441 by smlewis
Sat, 2017-12-23 15:56

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