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Rosetta 3 - Applications

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Normal topic Metal Ion in symmetric design
by tschiex » Wed, 2020-07-08 05:28
0
414 by tschiex
Wed, 2020-07-08 05:28
Normal topic appropriate sampling for protein docking to a multi chain assembly
by SWM » Fri, 2020-01-24 11:22
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413 by SWM
Fri, 2020-01-24 11:22
Normal topic FlexPepDocking
by jlawrie » Tue, 2020-09-15 12:52
0
413 by jlawrie
Tue, 2020-09-15 12:52
Normal topic Error when using Remodel on a protein with a chemically bound ligand
by Pappmaschee » Wed, 2020-12-16 09:23
0
409 by Pappmaschee
Wed, 2020-12-16 09:23
Normal topic Does antibody_numbering_converter support camelid antibody?
by mxp » Tue, 2020-07-07 01:21
0
408 by mxp
Tue, 2020-07-07 01:21
Normal topic Residue selector
by Alison_Yajie » Wed, 2020-06-17 19:57
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403 by Alison_Yajie
Thu, 2020-06-18 09:47
Normal topic Ligand docking with constraint
by Alison_Yajie » Wed, 2020-06-24 12:34
0
400 by Alison_Yajie
Wed, 2020-06-24 12:34
Normal topic Comparative Modeling Tutorial
by code_Monkey » Thu, 2021-03-04 12:35
1
397 by rmoretti
Fri, 2021-03-05 09:35
Normal topic Filling the missing loops
by code_Monkey » Tue, 2021-04-27 07:44
2
395 by code_Monkey
Tue, 2021-04-27 12:11
Normal topic "Residue 7 was disulfide bonded but had no partner" with antibody.linuxgccrelease
by Sunyp_IM » Thu, 2020-06-04 05:53
0
395 by Sunyp_IM
Thu, 2020-06-04 05:54
Normal topic General question regarding ligand-docking
by Alison_Yajie » Thu, 2020-05-07 09:48
0
388 by Alison_Yajie
Thu, 2020-05-07 09:48
Normal topic Scoring after HBNet
by HHL_SIUC » Wed, 2020-07-01 10:49
0
384 by HHL_SIUC
Wed, 2020-07-01 10:49
Normal topic RoseTTaFold
by ozsolomon » Thu, 2021-10-07 05:27
2
383 by ozsolomon
Thu, 2021-10-07 14:25
Normal topic Should I be stripping water molecules from my input structure for Rosetta Design?
by chrisHKL » Wed, 2021-03-24 14:22
1
383 by smlewis
Wed, 2021-03-24 14:59
Normal topic How to use base_pair_constraint for RNA as a constraint term?
by yels » Sat, 2021-04-03 01:19
1
382 by everyday847
Sun, 2021-04-04 12:48
Normal topic Global Docking with carbohydrates
by ChiauShu » Sat, 2020-08-22 20:16
0
382 by ChiauShu
Sat, 2020-08-22 20:16
Normal topic zero standard deviation of I_sc in protein-protein docking
by rohi » Fri, 2020-07-03 22:19
0
378 by rohi
Fri, 2020-07-03 22:20
Normal topic How many iterations of remodel is enough?
by daniloboskovic » Thu, 2020-07-16 08:07
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377 by daniloboskovic
Thu, 2020-07-16 08:14
Normal topic Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)?
by Corvin » Wed, 2020-12-16 04:58
0
376 by Corvin
Wed, 2020-12-30 09:21
Normal topic Fewer than expected structures in clustering output
by fabiotrovato » Thu, 2020-08-20 00:59
0
374 by fabiotrovato
Thu, 2020-08-20 00:59
Normal topic core.optimization.LineMinimizer: [ ERROR ] Inaccurate G!
by aralz » Thu, 2021-02-11 00:46
0
364 by aralz
Thu, 2021-02-11 00:46
Normal topic D-amino acids tripeptide docking.
by sam_dc » Sat, 2021-07-03 08:48
2
363 by vmulligan
Tue, 2021-07-06 08:27
Normal topic Side-chain grafting at the fixed protein and position
by Kazu » Wed, 2020-05-20 08:49
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361 by Kazu
Wed, 2020-05-20 08:49
Normal topic clustering output file has few structures
by fabiotrovato » Mon, 2020-08-17 11:37
0
358 by fabiotrovato
Mon, 2020-08-17 11:37
Normal topic different value of score from rna_denovo and rna_score?
by yikanzhang » Wed, 2021-02-03 07:17
1
357 by CameronJA
Tue, 2021-06-15 20:02
Normal topic RemodelMover and Input Pose
by ozyo » Tue, 2020-12-29 09:41
0
351 by ozyo
Tue, 2020-12-29 09:41
Normal topic residue_energy_breakdown of a protein-ligand complex.
by sam_dc » Tue, 2021-05-18 04:45
1
346 by rmoretti
Tue, 2021-05-18 07:21
Normal topic rosetta_cm segfault
by browns02 » Fri, 2021-07-09 13:35
2
338 by rmoretti
Fri, 2021-07-09 15:05
Normal topic Pepspec Anchor Dock
by Soler » Wed, 2020-09-16 19:08
0
337 by Soler
Wed, 2020-09-16 19:08
Normal topic RosettaAntibody - No matching templates for CDR1
by agctomer » Tue, 2021-01-19 22:45
0
337 by agctomer
Tue, 2021-01-19 22:45
Normal topic Help with enzyme design files
by Wenithor » Thu, 2021-04-29 10:33
1
331 by rmoretti
Thu, 2021-04-29 10:44
Normal topic metalloprotein ab initio with glutamic acid
by inorgchem » Tue, 2020-06-16 20:45
0
330 by inorgchem
Tue, 2020-06-16 20:45
Normal topic RosettaCM/hybridize
by kywei » Wed, 2021-04-28 09:56
1
330 by vmulligan
Wed, 2021-04-28 12:59
Normal topic Bug Report - Encoding issue
by daniloboskovic » Tue, 2020-08-04 07:02
0
327 by daniloboskovic
Tue, 2020-08-04 07:02
Normal topic Question about running scallo
by danbo » Mon, 2021-11-29 23:25
8
324 by danbo
Wed, 2021-12-22 23:51
Normal topic Modelling humanized camelid like antibody
by terabithia2011 » Tue, 2021-01-26 10:12
0
321 by terabithia2011
Tue, 2021-01-26 10:12
Normal topic Creating fragment files for proteins less than 27 aa in length
by Poladu » Tue, 2021-01-26 07:50
0
310 by Poladu
Tue, 2021-01-26 07:50
Normal topic setup_RosettaCM.py
by browns02 » Mon, 2021-06-28 07:13
2
309 by browns02
Tue, 2021-06-29 11:41
Normal topic Topobuilder segmentation fault
by tatsiana.bylund » Mon, 2021-08-09 07:10
0
306 by tatsiana.bylund
Mon, 2021-08-09 07:10
Normal topic Design of multimeric protein
by ldlamini » Mon, 2021-01-11 07:23
0
304 by ldlamini
Mon, 2021-01-11 07:23
Normal topic flexpepdcok of lipid conjugated peptide with glyco protein.
by ravi.thakkkar369 » Fri, 2020-12-18 13:00
0
302 by ravi.thakkkar369
Fri, 2020-12-18 13:00
Normal topic Question with rosetta AbPredict tutorial
by terabithia2011 » Mon, 2021-01-25 09:24
0
294 by terabithia2011
Mon, 2021-01-25 09:24
Normal topic Ab Initio folding with HEM ligand molecule
by jseco » Fri, 2021-03-05 06:49
0
286 by jseco
Mon, 2021-03-08 03:40
Normal topic duplex RNA
by amir_tagh » Thu, 2021-08-05 06:34
1
281 by everyday847
Mon, 2021-08-16 10:43
Normal topic PDB Clustering
by code_Monkey » Mon, 2021-04-05 10:40
0
281 by code_Monkey
Mon, 2021-04-05 10:40
Normal topic Blast error for rosetta antibody: No argument value given for Query file
by dngusdnr1 » Tue, 2021-06-08 17:30
1
279 by taylorjones
Wed, 2021-06-09 16:38
Normal topic hpatch commands and how to identify patches
by Bianca Oliva » Thu, 2021-04-29 04:02
0
277 by Bianca Oliva
Thu, 2021-04-29 04:02
Normal topic Stepwise Monte Carlo - errors with ResidueTypeSet and Disulfides
by user42 » Wed, 2021-07-21 20:34
1
277 by everyday847
Fri, 2021-07-30 13:26
Normal topic Python2 script in Rosetta3.13
by ddhoyo » Wed, 2021-09-15 04:05
1
277 by matteoferla
Wed, 2021-09-15 06:04
Normal topic multi ligand docking using rosetta script
by syntekabio2019 » Tue, 2021-04-13 19:31
0
274 by syntekabio2019
Tue, 2021-04-13 19:31
Normal topic Segfault with Pepspec
by almeida85 » Thu, 2021-02-11 02:56
0
272 by almeida85
Thu, 2021-02-11 02:56
Normal topic How to Perform point mutations with NCAA
by Subhrodeep Saha » Tue, 2021-06-22 02:05
1
267 by vmulligan
Thu, 2021-06-24 13:23
Normal topic Writing down properties for new atom types
by Corvin » Tue, 2021-01-12 04:30
0
263 by Corvin
Wed, 2021-01-13 04:00
Normal topic building a protein-dna homology model via cm_rosetta
by y_atsmonraz » Wed, 2021-10-20 23:11
4
254 by y_atsmonraz
Tue, 2021-11-02 01:47
Normal topic Patch to impose tetrahedral geometry on backbone O atom
by georg » Thu, 2021-04-08 09:30
0
254 by georg
Thu, 2021-04-08 09:31
Normal topic What is an SS0 predictor?
by ojmel » Fri, 2021-04-02 14:25
0
252 by ojmel
Mon, 2021-04-12 07:50
Normal topic FastRelax Refinement severe clashes
by Victor Tobiasson » Thu, 2021-05-20 06:55
0
245 by Victor Tobiasson
Thu, 2021-05-20 06:55
Normal topic Relaxed proteins show higher clash score in molprobity results.
by Wang Zhe » Fri, 2021-12-03 04:32
4
244 by smlewis
Wed, 2021-12-08 13:02
Normal topic Issues with modifying dock.xml for multiple ligand docking
by DGR95 » Fri, 2021-05-14 12:51
0
241 by DGR95
Fri, 2021-05-14 12:51
Normal topic clashes created with enzdes
by listofdina » Mon, 2021-08-02 06:51
0
216 by listofdina
Mon, 2021-08-02 06:51
Normal topic FlexPepDock bug? Constraints do not appear in total_score?
by nrollins » Mon, 2021-07-26 14:29
0
203 by nrollins
Mon, 2021-07-26 14:29
Normal topic antibody - sequence position requested was 0
by jremmel » Mon, 2021-09-27 12:26
1
182 by nannemdp
Mon, 2021-09-27 14:22
Normal topic The energy terms in InterfaceAnalyzer
by Sunyp_IM » Tue, 2021-11-02 18:43
2
180 by zivben
Sat, 2021-11-13 04:49
Normal topic C-termini remodelling of dimeric structure removes second chain
by LeonhardJS » Wed, 2021-10-13 06:23
1
179 by LeonhardJS
Fri, 2021-11-12 01:20
Normal topic FlexPepDock ab initio: behavior without fragment files
by nrollins » Mon, 2021-07-26 14:16
0
170 by nrollins
Mon, 2021-07-26 14:16
Normal topic Error reading in/out glycosylated silent file - "Can't create a polymer bond after residue due to incompatible type"
by amorin » Mon, 2021-09-27 12:16
0
170 by amorin
Mon, 2021-09-27 12:16
Normal topic Repacker vs minimization
by Elijah_Hix » Fri, 2021-07-02 07:25
0
167 by Elijah_Hix
Fri, 2021-07-02 07:25
Normal topic Problems with waters in CoupledMoves application
by Corvin » Tue, 2021-11-16 07:16
0
167 by Corvin
Tue, 2021-11-16 07:22
Normal topic constraining different chains together in rosetta_cm
by y_atsmonraz » Thu, 2021-11-18 02:59
0
165 by y_atsmonraz
Thu, 2021-11-18 03:01
Normal topic SecundaryStructure Filter
by Soler » Sun, 2021-11-21 22:20
0
155 by Soler
Sun, 2021-11-21 22:20
Normal topic Symmetry definition file versions
by Jeff Qu » Tue, 2021-09-28 09:53
0
143 by Jeff Qu
Tue, 2021-09-28 09:53
Normal topic Linker Building in scFv
by sam_dc » Sat, 2021-10-09 05:38
0
139 by sam_dc
Sat, 2021-10-09 05:38
Normal topic getting a3m files
by alonwenger » Wed, 2021-12-15 02:38
2
132 by alonwenger
Sat, 2021-12-18 12:32
Normal topic connecting rna strands together
by y_atsmonraz » Tue, 2021-11-09 05:42
1
127 by y_atsmonraz
Thu, 2021-11-11 04:51
Normal topic Rosetta DARc suboptimal dockings
by ddhoyo » Mon, 2021-10-11 06:18
0
126 by ddhoyo
Mon, 2021-10-11 06:18
Normal topic trRosetta - Nan occuring in Hbond calculation
by y_atsmonraz » Mon, 2021-10-04 09:16
0
122 by y_atsmonraz
Mon, 2021-10-04 09:16
Normal topic [LoopModelerMover] ERROR: Can't build a fold tree from a loop with an unspecified cut point.
by dgm3 » Sun, 2021-12-26 18:32
1
88 by dgm3
Fri, 2021-12-31 17:42
Normal topic How to apply cartesian_ddg to multi-metric enzyme?
by Wang Zhe » Wed, 2021-12-08 10:07
0
88 by Wang Zhe
Wed, 2021-12-08 10:07
Normal topic Segfault error while running MR Rosetta in Phenix
by memilton » Thu, 2021-12-16 09:09
0
84 by memilton
Thu, 2021-12-16 09:09
Normal topic ERROR: APBS failed to generate the result file.
by bhavranek » Sat, 2021-12-18 11:01
1
81 by bhavranek
Sun, 2021-12-26 21:05
Normal topic Remodel's problem in treatment with non-protein residues
by Corvin » Mon, 2021-12-13 09:07
0
74 by Corvin
Mon, 2021-12-13 09:07
Normal topic simple_cycpep_predict with N-term acetylation
by Ken » Fri, 2021-12-17 09:49
0
71 by Ken
Fri, 2021-12-17 09:49
Normal topic I need help with cst file the paper: De Novo Computational Design of Retro-Aldol Enzymes
by Wenithor » Thu, 2022-01-06 12:20
0
67 by Wenithor
Thu, 2022-01-06 12:20
Normal topic Protein design: Ligand binding between two units of a homodimer
by chemotaxis_123 » Sun, 2022-01-02 16:01
0
51 by chemotaxis_123
Sun, 2022-01-02 16:01
Normal topic charge grid in rosetta ligand docking using rosetta script
by syntekabio2019 » Mon, 2022-01-17 23:53
0
31 by syntekabio2019
Mon, 2022-01-17 23:53
Normal topic ligand dock into HEM containg pdb
by syntekabio2019 » Thu, 2022-01-20 03:05
0
21 by syntekabio2019
Thu, 2022-01-20 03:05

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