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Rosetta 3 - Applications
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Topic / Topic starter | Replies | Views | Last post | |
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Results of enzyme_design not consistent with Resfile by yogeshkd » Thu, 2013-02-14 15:56 |
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6,594 |
by yogeshkd Mon, 2014-04-21 06:47 |
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How to define pi-pi stacking in cst file? by lzx32 » Mon, 2011-07-04 23:47 |
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8,167 |
by lzx32 Mon, 2014-04-21 06:47 |
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Relax a structure with >1 copy of a modified residue fails [Solved] by franfdez » Wed, 2012-02-08 00:47 |
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6,478 |
by franfdez Mon, 2014-04-21 06:47 |
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ab inito memberane(error in alignblast.pl) by kingljy » Tue, 2011-05-03 23:41 |
6 |
7,115 |
by karthishanmugam Mon, 2014-04-21 06:47 |
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Rotamers used in fixbb by lanselibai » Thu, 2014-11-06 02:47 |
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6,146 |
by lanselibai Tue, 2014-11-11 15:28 |
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rosetta_2013wk52: make_fragments.pl failed by fred » Thu, 2014-01-30 12:41 |
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8,640 |
by rmoretti Fri, 2014-02-07 08:01 |
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scoring of beta sandwich protein by attesor » Mon, 2014-11-17 08:24 |
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6,098 |
by rmoretti Thu, 2014-11-20 10:46 |
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Help with enzyme design by lzx32 » Fri, 2011-04-08 22:29 |
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6,561 |
by lzx32 Mon, 2014-04-21 06:47 |
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mover "RepackMinimize" does not support chains > 2? by jarod » Mon, 2013-05-20 02:17 |
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7,547 |
by jarod Mon, 2014-04-21 06:47 |
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enzyme design and output_matchres_only by petrikigor » Wed, 2012-10-24 18:45 |
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5,313 |
by petrikigor Mon, 2014-04-21 06:47 |
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protein structure prediction using relax -- high-powered jobs by rfieldhouse » Mon, 2011-05-30 18:29 |
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7,731 |
by dimaio Mon, 2014-04-21 06:47 |
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How to write down a connection between ligand's atom and metal ion from enzyme? by Corvin » Mon, 2021-02-15 06:54 |
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3,548 |
by aloshbau Mon, 2021-03-01 20:06 |
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How to find cluster core structure? by assignfit » Thu, 2012-03-29 20:35 |
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7,360 |
by attesor Wed, 2017-06-14 07:32 |
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suppress pdb output from backrub by attesor » Mon, 2014-10-27 11:16 |
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7,208 |
by rmoretti Mon, 2014-11-03 15:47 |
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If "clustering.py" can be used for PDBs contain two chains? by lanselibai » Wed, 2014-11-05 06:05 |
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7,183 |
by lanselibai Tue, 2014-12-02 09:43 |
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Ensemble Docking in Rosetta3.5? by protos_heis » Fri, 2015-05-22 06:42 |
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8,576 |
by protos_heis Mon, 2015-06-08 07:00 |
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"ddg_monomer.linuxgccrelease" by following "High Resolution Protocol" by lanselibai » Wed, 2014-10-01 09:54 |
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10,831 |
by lanselibai Sat, 2015-01-03 08:18 |
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ddg_monomer consumes massive RAM by cossio » Fri, 2018-03-09 17:02 |
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6,332 |
by rmoretti Mon, 2018-03-19 12:12 |
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Write one's own constraint type by djpittdj » Thu, 2012-11-08 12:29 |
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6,705 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaRemodel can not work now? by myputer » Tue, 2013-08-13 16:56 |
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7,570 |
by rmoretti Mon, 2014-04-21 06:48 |
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About scorefunction. by Run » Mon, 2013-09-09 23:08 |
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7,632 |
by rmoretti Mon, 2014-04-21 06:48 |
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variable length fragments for Ab initio by attesor » Wed, 2015-07-01 06:13 |
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7,076 |
by rmoretti Tue, 2015-08-18 16:47 |
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Problem about energy score by tfliu » Tue, 2013-11-05 02:09 |
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7,762 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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Fragment files for membrane_abinitio application by sumukh21 » Sun, 2011-02-13 20:34 |
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6,907 |
by yarovoy Mon, 2014-04-21 06:47 |
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ERROR: Unable to fill in missing atoms. by mieczyslaw » Tue, 2020-10-20 09:43 |
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6,350 |
by rayyoung Thu, 2021-11-18 10:13 |
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How can I prevent coordinates shift when using "loopmodel.linuxgccrelease"? by lanselibai » Tue, 2014-11-04 14:56 |
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7,784 |
by lanselibai Wed, 2014-11-12 11:17 |
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modeling phosphorylated residue by rosetter » Fri, 2011-03-18 08:13 |
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8,586 |
by smlewis Mon, 2014-04-21 06:47 |
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SnugDocking a VHH:antigen complex possible? by David Weis » Thu, 2017-02-16 05:57 |
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6,087 |
by rmoretti Thu, 2017-07-06 13:00 |
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Can rosetta generate a centroid model based on the rna sequence? by yels » Fri, 2021-03-26 04:06 |
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3,135 |
by yels Wed, 2021-03-31 18:31 |
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H3 modeling takes 10 days more? by jessye » Fri, 2017-10-27 03:11 |
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5,365 |
by jessye Fri, 2017-11-03 20:15 |
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running in MPI mode and multiple scores per output PDB file? by dantimatter » Wed, 2019-10-30 09:42 |
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5,179 |
by dantimatter Wed, 2019-11-06 09:51 |
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Rosetta scoring by Dimitrov » Thu, 2012-09-20 01:54 |
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9,908 |
by attesor Mon, 2014-04-21 06:47 |
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segmentation fault after core.kinematics.FoldTree in homology modeling by pdbb » Mon, 2012-10-08 14:27 |
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7,557 |
by rmoretti Mon, 2014-04-21 06:47 |
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Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring by brspurri » Wed, 2017-03-29 13:19 |
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6,415 |
by matteoferla Mon, 2021-07-19 06:13 |
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neutral N-term and C-term by nawsad » Sun, 2013-06-09 10:20 |
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9,032 |
by helenah Thu, 2020-10-08 05:29 |
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Abinitio Relax Error from -kill_hairpins by attesor » Tue, 2014-10-28 05:33 |
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7,618 |
by rmoretti Tue, 2014-11-04 10:28 |
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Inserting residues using RosettaRemodel by eleishaj » Tue, 2015-11-24 08:54 |
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8,490 |
by eyong123 Wed, 2015-12-09 07:17 |
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where is pdb2vall.py by tevang » Thu, 2013-01-24 13:35 |
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7,099 |
by dktest Mon, 2014-04-21 06:47 |
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[SOLVED]core.io.silent: [ WARNING ] ... by fred » Wed, 2011-10-05 07:38 |
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8,076 |
by fred Mon, 2014-04-21 06:47 |
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Noncanonical amino acids by wsgosal » Tue, 2014-03-18 05:29 |
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7,564 |
by e3lm Thu, 2022-05-26 12:51 |
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demo of molecular replacement with rosetta (mr_rosetta) by wenchangyu2008 » Sun, 2011-03-20 05:23 |
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11,211 |
by astrofunk12 Mon, 2014-04-21 06:47 |
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SnugDock - What protocol should I use? by dfcoelho » Tue, 2018-11-27 07:32 |
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7,412 |
by dfcoelho Wed, 2018-11-28 08:07 |
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fixbb design using damped LJ by Anonymous » Fri, 2012-08-17 03:51 |
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7,942 |
by Anonymous Mon, 2014-04-21 06:47 |
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errors about RIFdocking by sia » Sun, 2022-07-24 20:45 |
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2,671 |
by Minghui-Du Sun, 2024-03-24 21:12 |
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Fold tree C->N: RosettaScripts by aroop » Wed, 2013-02-13 10:31 |
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8,161 |
by smlewis Mon, 2014-04-21 06:47 |
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to create the template pdb file by benniu2004 » Sat, 2012-12-29 23:04 |
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8,687 |
by benniu2004 Mon, 2014-04-21 06:47 |
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Adding bridged water interaction in constraint file by purvi24 » Thu, 2019-02-28 07:01 |
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5,289 |
by purvi24 Mon, 2019-03-11 06:43 |
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Problems with Ligand Docking by saxen » Fri, 2011-08-19 00:19 |
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8,843 |
by glemmon Mon, 2014-04-21 06:47 |
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Converting -patch replonly residues to original sequence by subha » Mon, 2017-06-26 13:39 |
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6,174 |
by smlewis Tue, 2017-07-04 15:42 |
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Question about running scallo by danbo » Mon, 2021-11-29 23:25 |
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3,520 |
by danbo Wed, 2021-12-22 23:51 |
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Multistate design on Rosetta - no generations produced by tong » Wed, 2018-06-13 00:36 |
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5,473 |
by smlewis Thu, 2018-06-14 10:26 |
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Why do non proten ligands get a very high score in kinematic loop modeling/ in general? by a_s_a » Wed, 2011-06-15 00:03 |
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7,950 |
by a_s_a Mon, 2014-04-21 06:47 |
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InterfaceAnalyzer:“too many tries in fill_missing_atoms!” by mxp » Tue, 2019-08-06 00:41 |
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6,793 |
by mxp Mon, 2019-08-12 18:42 |
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Syntax to build a silent file by lanselibai » Fri, 2014-09-26 09:13 |
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9,977 |
by lanselibai Tue, 2014-09-30 03:45 |
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Ab-initio peptide-protein docking by suhail » Sun, 2013-06-23 16:20 |
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12,021 |
by rmoretti Fri, 2016-04-29 08:57 |
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cryptic error message from remodel in rosetta_scripts by petrikigor » Mon, 2012-12-03 15:13 |
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8,731 |
by petrikigor Mon, 2014-04-21 06:47 |
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RAbD with N-term,Proline-like ncaa returns segmentation fault during CCDEndsGraftMover by CordycepsLin » Sun, 2022-02-06 19:09 |
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3,604 |
by CordycepsLin Wed, 2022-02-09 19:39 |
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loop re-modeling std::out_of_range by rlwoltz » Tue, 2013-03-12 18:11 |
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8,938 |
by smlewis Mon, 2014-04-21 06:47 |
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Runnig Abinitio & score app by Gaurav_kumar » Wed, 2011-11-23 20:45 |
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11,689 |
by rmoretti Mon, 2014-04-21 06:47 |
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Symmetry Docking and Clustering with Ligands by skovacs » Wed, 2012-03-07 16:46 |
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11,738 |
by Anonymous Mon, 2014-04-21 06:47 |
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problems in InterfaceAnalyzer analysis by chenchaozhao » Fri, 2011-12-02 23:36 |
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8,699 |
by smlewis Mon, 2014-04-21 06:47 |
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ab initio membrane error (frag9 file...) by almeida » Mon, 2012-07-30 08:53 |
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9,560 |
by rmoretti Tue, 2014-08-12 08:15 |
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fix the left part doesn't work by albumns » Wed, 2012-11-07 00:02 |
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7,098 |
by albumns Mon, 2014-04-21 06:47 |
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how to fix the ATP HETATM by using movemap or constraint file? by ziqi1234 » Mon, 2017-11-20 06:43 |
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7,001 |
by ziqi1234 Wed, 2017-11-22 06:21 |
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Including waters in RosettaCM by ajkal » Thu, 2017-04-27 11:59 |
9 |
7,737 |
by rpavlov Tue, 2017-06-06 11:45 |
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RosettaDock - Constraints File by edpryor » Wed, 2012-09-19 06:23 |
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12,701 |
by joeg Mon, 2014-04-21 06:47 |
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ORBITAL records in self generated .params (ligands) by ast » Thu, 2014-03-06 07:22 |
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9,208 |
by ast Thu, 2014-03-13 07:17 |
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fixing disulfides in homolgy modeling by pdbb » Wed, 2013-02-13 11:43 |
10 |
12,023 |
by kamau Mon, 2014-09-22 09:39 |
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SEWING and motif file generation by rbjacob » Thu, 2018-07-12 07:28 |
10 |
6,900 |
by zhangying1990 Tue, 2019-06-04 18:04 |
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std::bad_alloc error after changing .xml script? by chrisHKL » Wed, 2020-03-04 11:44 |
10 |
5,593 |
by jadolfbr Thu, 2020-03-05 07:02 |
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Don't know how to extract scores from a RNA de novo silent file. by Basantab » Wed, 2011-11-23 17:27 |
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10,018 |
by smlewis Mon, 2014-04-21 06:47 |
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A problem with "molfile_to_params.py" by Rosettasz » Mon, 2013-08-19 19:35 |
10 |
11,197 |
by egecav Mon, 2021-01-18 05:41 |
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RosettaDNA error by deltag » Fri, 2012-12-07 06:09 |
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9,847 |
by deltag Mon, 2014-04-21 06:47 |
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Questions for "modeling_instructions.pdf" in "Homology or Loop Modelling" by lanselibai » Sun, 2014-09-21 09:02 |
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10,847 |
by lanselibai Tue, 2014-10-07 02:58 |
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how to repacking loop while freezing other residues? by jfhuang » Wed, 2012-07-25 06:59 |
10 |
8,832 |
by jfhuang Mon, 2014-04-21 06:47 |
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Abinitio error: ERROR: Value of inactive option accessed: -in:file:frag9 by rlwoltz » Tue, 2012-09-18 14:04 |
11 |
16,305 |
by RAGHURAMAN Fri, 2014-08-08 02:19 |
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Should FastRelax be commented out in Calculate_protein_protein_ddg demo? by cossio » Mon, 2016-10-31 12:01 |
11 |
9,520 |
by cossio Mon, 2016-11-21 07:56 |
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XML validation failing by mb0261 » Fri, 2023-04-14 14:53 |
11 |
2,085 |
by mb0261 Mon, 2023-04-17 17:38 |
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in silico affinity maturation design by jarod » Mon, 2013-05-20 02:07 |
11 |
12,541 |
by jarod Mon, 2014-04-21 06:47 |
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Rosetta-Holes Scoring Function by kroberts » Fri, 2011-05-13 14:05 |
11 |
14,825 |
by rmoretti Mon, 2014-04-21 06:47 |
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fragment_picker.mpi.linuxgccrelease can't find : libsqlite3.so by starone » Mon, 2016-06-20 19:22 |
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13,533 |
by starone Fri, 2016-06-24 18:29 |
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Error while running Enzyme Design by saxen » Fri, 2011-10-21 15:46 |
11 |
11,038 |
by akpole Mon, 2014-04-21 06:47 |
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Where is the RosettaHoles2 executable? by lah435 » Mon, 2012-06-04 15:15 |
11 |
8,805 |
by smlewis Mon, 2014-04-21 06:47 |
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No output pdb files after docking protein and DNA/RNA by yzq » Thu, 2012-10-25 08:23 |
11 |
12,145 |
by rmoretti Fri, 2016-06-17 10:22 |
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-kill_hairpin error by jadolfbr » Wed, 2011-10-05 18:53 |
11 |
17,400 |
by rmoretti Mon, 2015-09-28 15:00 |
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ddg_monomer problem by deltag » Wed, 2012-04-04 07:53 |
11 |
12,436 |
by smlewis Mon, 2014-04-21 06:47 |
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How to use -cst_fa_file and -relax:constrain_relax_to_native_coords at the same time by Anatol » Thu, 2012-11-29 14:12 |
11 |
10,607 |
by smlewis Mon, 2014-04-21 06:47 |
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Surface Docking Application Crash by dkozuch » Sat, 2017-09-02 18:32 |
12 |
8,768 |
by Anpu Tue, 2018-09-25 19:06 |
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the extracted pdb file by benniu2004 » Fri, 2013-01-04 17:55 |
12 |
13,909 |
by benniu2004 Mon, 2014-04-21 06:47 |
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AbinitioRelax usage (3.4) by atruong » Fri, 2012-10-12 13:38 |
12 |
11,207 |
by atruong Mon, 2014-04-21 06:47 |
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"score vs RMSD plots" & "cluster models" by lanselibai » Thu, 2014-09-25 06:51 |
12 |
24,629 |
by lanselibai Wed, 2014-10-15 01:54 |
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Segmentation fault (core dumped) in rosetta_scripts.default.linuxgccrelease after blueprint file reading by Corvin » Tue, 2020-06-30 00:36 |
12 |
8,830 |
by Corvin Tue, 2020-11-10 01:22 |
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fragment picker does not follow dihedral constraints by attesor » Tue, 2016-05-24 23:22 |
12 |
10,917 |
by smlewis Wed, 2016-08-17 07:56 |
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Scoring residue vs. organic ligand by almeida » Tue, 2014-04-08 12:18 |
12 |
13,794 |
by rmoretti Thu, 2014-04-24 14:43 |
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Camelid antibody (VHH) modelling by Ayoub Ksouri » Tue, 2017-04-04 22:52 |
13 |
10,588 |
by Ayoub Ksouri Wed, 2017-04-19 15:16 |
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ddg_monomer mutations list: How to specify chain ID? by cossio » Tue, 2014-12-09 14:26 |
13 |
16,903 |
by rmoretti Thu, 2016-04-28 16:43 |
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[SOLVED] swamped memory by fred » Fri, 2011-09-16 08:19 |
13 |
12,280 |
by fred Mon, 2014-04-21 06:47 |
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Problems when running Rosetta VIP with cofactors by Basantab » Fri, 2013-04-26 13:31 |
14 |
15,067 |
by Basantab Mon, 2014-04-21 06:47 |
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About loophash and batchrelax. by Run » Mon, 2013-07-22 23:54 |
14 |
13,299 |
by Run Mon, 2014-04-21 06:48 |
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Fastsaxs by Pernille » Mon, 2013-07-22 07:29 |
14 |
37,793 |
by rmoretti Mon, 2021-06-14 12:56 |
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