You are here

Rosetta 3 - Applications

Pages

Topic / Topic starter Repliessort descending Views Last post
Normal topic Inserting residues using RosettaRemodel
by eleishaj » Tue, 2015-11-24 08:54
7
7,873 by eyong123
Wed, 2015-12-09 07:17
Normal topic Fragment files for membrane_abinitio application
by sumukh21 » Sun, 2011-02-13 20:34
7
6,414 by yarovoy
Mon, 2014-04-21 06:47
Normal topic How to find cluster core structure?
by assignfit » Thu, 2012-03-29 20:35
7
6,837 by attesor
Wed, 2017-06-14 07:32
Normal topic modeling phosphorylated residue
by rosetter » Fri, 2011-03-18 08:13
7
8,085 by smlewis
Mon, 2014-04-21 06:47
Normal topic neutral N-term and C-term
by nawsad » Sun, 2013-06-09 10:20
7
8,525 by helenah
Thu, 2020-10-08 05:29
Normal topic How to write down a connection between ligand's atom and metal ion from enzyme?
by Corvin » Mon, 2021-02-15 06:54
7
2,911 by aloshbau
Mon, 2021-03-01 20:06
Normal topic suppress pdb output from backrub
by attesor » Mon, 2014-10-27 11:16
7
6,631 by rmoretti
Mon, 2014-11-03 15:47
Normal topic If "clustering.py" can be used for PDBs contain two chains?
by lanselibai » Wed, 2014-11-05 06:05
7
6,697 by lanselibai
Tue, 2014-12-02 09:43
Normal topic SnugDock - What protocol should I use?
by dfcoelho » Tue, 2018-11-27 07:32
8
6,644 by dfcoelho
Wed, 2018-11-28 08:07
Normal topic Why do non proten ligands get a very high score in kinematic loop modeling/ in general?
by a_s_a » Wed, 2011-06-15 00:03
8
7,451 by a_s_a
Mon, 2014-04-21 06:47
Normal topic Noncanonical amino acids
by wsgosal » Tue, 2014-03-18 05:29
8
6,806 by e3lm
Thu, 2022-05-26 12:51
Normal topic Adding bridged water interaction in constraint file
by purvi24 » Thu, 2019-02-28 07:01
8
4,653 by purvi24
Mon, 2019-03-11 06:43
Normal topic [SOLVED]core.io.silent: [ WARNING ] ...
by fred » Wed, 2011-10-05 07:38
8
7,504 by fred
Mon, 2014-04-21 06:47
Normal topic Converting -patch replonly residues to original sequence
by subha » Mon, 2017-06-26 13:39
8
5,601 by smlewis
Tue, 2017-07-04 15:42
Normal topic Fold tree C->N: RosettaScripts
by aroop » Wed, 2013-02-13 10:31
8
7,629 by smlewis
Mon, 2014-04-21 06:47
Normal topic Question about running scallo
by danbo » Mon, 2021-11-29 23:25
8
2,779 by danbo
Wed, 2021-12-22 23:51
Normal topic to create the template pdb file
by benniu2004 » Sat, 2012-12-29 23:04
8
8,223 by benniu2004
Mon, 2014-04-21 06:47
Normal topic demo of molecular replacement with rosetta (mr_rosetta)
by wenchangyu2008 » Sun, 2011-03-20 05:23
8
10,621 by astrofunk12
Mon, 2014-04-21 06:47
Normal topic Multistate design on Rosetta - no generations produced
by tong » Wed, 2018-06-13 00:36
8
4,887 by smlewis
Thu, 2018-06-14 10:26
Normal topic InterfaceAnalyzer:“too many tries in fill_missing_atoms!”
by mxp » Tue, 2019-08-06 00:41
8
5,883 by mxp
Mon, 2019-08-12 18:42
Normal topic Syntax to build a silent file
by lanselibai » Fri, 2014-09-26 09:13
8
9,337 by lanselibai
Tue, 2014-09-30 03:45
Normal topic Problems with Ligand Docking
by saxen » Fri, 2011-08-19 00:19
8
8,315 by glemmon
Mon, 2014-04-21 06:47
Normal topic fixbb design using damped LJ
by Anonymous » Fri, 2012-08-17 03:51
8
7,521 by Anonymous
Mon, 2014-04-21 06:47
Normal topic ORBITAL records in self generated .params (ligands)
by ast » Thu, 2014-03-06 07:22
9
8,588 by ast
Thu, 2014-03-13 07:17
Normal topic ab initio membrane error (frag9 file...)
by almeida » Mon, 2012-07-30 08:53
9
8,966 by rmoretti
Tue, 2014-08-12 08:15
Normal topic Ab-initio peptide-protein docking
by suhail » Sun, 2013-06-23 16:20
9
11,411 by rmoretti
Fri, 2016-04-29 08:57
Normal topic cryptic error message from remodel in rosetta_scripts
by petrikigor » Mon, 2012-12-03 15:13
9
8,084 by petrikigor
Mon, 2014-04-21 06:47
Normal topic loop re-modeling std::out_of_range
by rlwoltz » Tue, 2013-03-12 18:11
9
8,323 by smlewis
Mon, 2014-04-21 06:47
Normal topic fix the left part doesn't work
by albumns » Wed, 2012-11-07 00:02
9
6,612 by albumns
Mon, 2014-04-21 06:47
Normal topic RosettaDock - Constraints File
by edpryor » Wed, 2012-09-19 06:23
9
12,062 by joeg
Mon, 2014-04-21 06:47
Normal topic Runnig Abinitio & score app
by Gaurav_kumar » Wed, 2011-11-23 20:45
9
11,128 by rmoretti
Mon, 2014-04-21 06:47
Normal topic how to fix the ATP HETATM by using movemap or constraint file?
by ziqi1234 » Mon, 2017-11-20 06:43
9
6,263 by ziqi1234
Wed, 2017-11-22 06:21
Normal topic Including waters in RosettaCM
by ajkal » Thu, 2017-04-27 11:59
9
7,111 by rpavlov
Tue, 2017-06-06 11:45
Normal topic problems in InterfaceAnalyzer analysis
by chenchaozhao » Fri, 2011-12-02 23:36
9
8,092 by smlewis
Mon, 2014-04-21 06:47
Normal topic RAbD with N-term,Proline-like ncaa returns segmentation fault during CCDEndsGraftMover
by CordycepsLin » Sun, 2022-02-06 19:09
9
2,713 by CordycepsLin
Wed, 2022-02-09 19:39
Normal topic Symmetry Docking and Clustering with Ligands
by skovacs » Wed, 2012-03-07 16:46
9
11,142 by Anonymous
Mon, 2014-04-21 06:47
Normal topic fixing disulfides in homolgy modeling
by pdbb » Wed, 2013-02-13 11:43
10
11,312 by kamau
Mon, 2014-09-22 09:39
Normal topic how to repacking loop while freezing other residues?
by jfhuang » Wed, 2012-07-25 06:59
10
8,331 by jfhuang
Mon, 2014-04-21 06:47
Normal topic Questions for "modeling_instructions.pdf" in "Homology or Loop Modelling"
by lanselibai » Sun, 2014-09-21 09:02
10
10,240 by lanselibai
Tue, 2014-10-07 02:58
Normal topic A problem with "molfile_to_params.py"
by Rosettasz » Mon, 2013-08-19 19:35
10
10,401 by egecav
Mon, 2021-01-18 05:41
Normal topic SEWING and motif file generation
by rbjacob » Thu, 2018-07-12 07:28
10
6,138 by zhangying1990
Tue, 2019-06-04 18:04
Normal topic Don't know how to extract scores from a RNA de novo silent file.
by Basantab » Wed, 2011-11-23 17:27
10
9,457 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaDNA error
by deltag » Fri, 2012-12-07 06:09
10
9,250 by deltag
Mon, 2014-04-21 06:47
Normal topic std::bad_alloc error after changing .xml script?
by chrisHKL » Wed, 2020-03-04 11:44
10
4,820 by jadolfbr
Thu, 2020-03-05 07:02
Normal topic Should FastRelax be commented out in Calculate_protein_protein_ddg demo?
by cossio » Mon, 2016-10-31 12:01
11
8,769 by cossio
Mon, 2016-11-21 07:56
Normal topic XML validation failing
by mb0261 » Fri, 2023-04-14 14:53
11
878 by mb0261
Mon, 2023-04-17 17:38
Normal topic How to use -cst_fa_file and -relax:constrain_relax_to_native_coords at the same time
by Anatol » Thu, 2012-11-29 14:12
11
9,987 by smlewis
Mon, 2014-04-21 06:47
Normal topic -kill_hairpin error
by jadolfbr » Wed, 2011-10-05 18:53
11
16,283 by rmoretti
Mon, 2015-09-28 15:00
Normal topic fragment_picker.mpi.linuxgccrelease can't find : libsqlite3.so
by starone » Mon, 2016-06-20 19:22
11
12,441 by starone
Fri, 2016-06-24 18:29
Normal topic Where is the RosettaHoles2 executable?
by lah435 » Mon, 2012-06-04 15:15
11
8,165 by smlewis
Mon, 2014-04-21 06:47
Normal topic No output pdb files after docking protein and DNA/RNA
by yzq » Thu, 2012-10-25 08:23
11
11,369 by rmoretti
Fri, 2016-06-17 10:22
Normal topic in silico affinity maturation design
by jarod » Mon, 2013-05-20 02:07
11
11,842 by jarod
Mon, 2014-04-21 06:47
Normal topic ddg_monomer problem
by deltag » Wed, 2012-04-04 07:53
11
11,603 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta-Holes Scoring Function
by kroberts » Fri, 2011-05-13 14:05
11
14,008 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Abinitio error: ERROR: Value of inactive option accessed: -in:file:frag9
by rlwoltz » Tue, 2012-09-18 14:04
11
15,446 by RAGHURAMAN
Fri, 2014-08-08 02:19
Normal topic Error while running Enzyme Design
by saxen » Fri, 2011-10-21 15:46
11
10,348 by akpole
Mon, 2014-04-21 06:47
Normal topic "score vs RMSD plots" & "cluster models"
by lanselibai » Thu, 2014-09-25 06:51
12
23,121 by lanselibai
Wed, 2014-10-15 01:54
Normal topic Scoring residue vs. organic ligand
by almeida » Tue, 2014-04-08 12:18
12
13,012 by rmoretti
Thu, 2014-04-24 14:43
Normal topic the extracted pdb file
by benniu2004 » Fri, 2013-01-04 17:55
12
13,127 by benniu2004
Mon, 2014-04-21 06:47
Normal topic Segmentation fault (core dumped) in rosetta_scripts.default.linuxgccrelease after blueprint file reading
by Corvin » Tue, 2020-06-30 00:36
12
7,612 by Corvin
Tue, 2020-11-10 01:22
Normal topic fragment picker does not follow dihedral constraints
by attesor » Tue, 2016-05-24 23:22
12
10,124 by smlewis
Wed, 2016-08-17 07:56
Normal topic AbinitioRelax usage (3.4)
by atruong » Fri, 2012-10-12 13:38
12
10,464 by atruong
Mon, 2014-04-21 06:47
Normal topic Surface Docking Application Crash
by dkozuch » Sat, 2017-09-02 18:32
12
7,925 by Anpu
Tue, 2018-09-25 19:06
Normal topic ddg_monomer mutations list: How to specify chain ID?
by cossio » Tue, 2014-12-09 14:26
13
15,849 by rmoretti
Thu, 2016-04-28 16:43
Normal topic [SOLVED] swamped memory
by fred » Fri, 2011-09-16 08:19
13
11,398 by fred
Mon, 2014-04-21 06:47
Normal topic Camelid antibody (VHH) modelling
by Ayoub Ksouri » Tue, 2017-04-04 22:52
13
9,686 by Ayoub Ksouri
Wed, 2017-04-19 15:16
Normal topic Problems when running Rosetta VIP with cofactors
by Basantab » Fri, 2013-04-26 13:31
14
14,156 by Basantab
Mon, 2014-04-21 06:47
Normal topic About loophash and batchrelax.
by Run » Mon, 2013-07-22 23:54
14
12,315 by Run
Mon, 2014-04-21 06:48
Normal topic loop_length_changing
by lanselibai » Tue, 2014-10-14 04:10
14
12,886 by lanselibai
Fri, 2014-11-07 02:06
Normal topic Fastsaxs
by Pernille » Mon, 2013-07-22 07:29
14
36,745 by rmoretti
Mon, 2021-06-14 12:56
Hot topic CoupledMoves not altering backbone coordinates?
by amorin » Wed, 2021-01-20 11:38
15
5,565 by amorin
Sat, 2021-02-27 20:29
Hot topic Errors in Getting Erraser to run
by belousoff » Thu, 2017-06-01 16:13
15
11,037 by belousoff
Mon, 2017-06-26 16:46
Hot topic membrane scoring function performance
by tevang » Wed, 2013-03-20 08:40
15
14,312 by smlewis
Mon, 2014-04-21 06:47
Hot topic Folppy Tail and Constraints
by sfulad2 » Fri, 2017-05-12 12:23
15
9,171 by smlewis
Fri, 2017-09-08 09:16
Hot topic usage of score3
by Run » Sat, 2013-09-28 02:06
16
16,187 by jadolfbr
Mon, 2014-04-21 06:48
Hot topic A problem with RosettaLigand
by Rosettasz » Fri, 2013-07-19 16:09
16
17,966 by Rosettasz
Mon, 2014-04-21 06:48
Hot topic FloppyTail bugs for N-terminal tails
by Dave C » Thu, 2012-03-01 13:06
18
14,963 by bbarryabc
Mon, 2014-04-21 06:47
Hot topic Fixbb Multiple Resfiles
by protos_heis » Mon, 2012-10-15 10:34
18
14,319 by protos_heis
Mon, 2014-04-21 06:47
Hot topic Run AbinitioRelax (rosetta 3.3) on cluster
by grisha » Mon, 2011-12-12 14:20
18
16,745 by grisha
Mon, 2014-04-21 06:47
Hot topic Syntax for relax.linuxgccrelease
by lanselibai » Wed, 2014-09-24 04:34
18
22,879 by lanselibai
Tue, 2014-12-02 09:46
Hot topic Ab initio with multiple metal ions
by cheyuk » Sun, 2013-12-29 17:58
19
19,131 by masterofpuppets
Tue, 2015-01-27 04:26
Hot topic Error with recognizing rotamer library atoms
by oerbilgin » Fri, 2011-11-04 15:23
19
27,413 by oerbilgin
Mon, 2014-04-21 06:47
Hot topic homology modeling with end extension
by fred » Mon, 2012-10-08 14:19
19
16,774 by xpzhang
Mon, 2014-04-21 06:47
Hot topic rosettaCM not recognizing Mn atom
by banshee » Mon, 2016-09-12 23:33
20
15,339 by rmoretti
Wed, 2018-11-21 15:45
Hot topic Garbled Ligands from docking_protocol
by skovacs » Tue, 2011-12-20 07:55
21
17,964 by skovacs
Mon, 2014-04-21 06:47
Hot topic some application troubles when using resfile flag
by chenchaozhao » Tue, 2011-04-05 00:05
24
25,220 by smlewis
Mon, 2014-04-21 06:47
Hot topic Rosetta Scripts: Loop Modeling w. Selective Repacking
by aroop » Mon, 2013-01-07 08:45
24
18,361 by aroop
Mon, 2014-04-21 06:47
Hot topic ddG calculation
by malkeet.singh » Sun, 2017-06-25 07:53
32
22,668 by malkeet.singh
Tue, 2017-11-14 04:33
Hot topic a trouble during floppytail modeling
by chenchaozhao » Tue, 2011-03-15 03:59
39
35,553 by smlewis
Thu, 2017-06-01 10:02
Hot topic multiple template homolgy modelling (Page: 1, 2)
by pdbb » Tue, 2012-10-30 08:12
51
56,061 by rmoretti
Fri, 2018-05-18 12:40

Pages

New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - Applications