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Rosetta 3 - Applications

Topic / Topic starter Repliessort descending Views Last post
Normal topic pepspec anchor dock
by Astghik » Tue, 2020-10-20 05:31
6
3,652 by Pappmaschee
Thu, 2020-12-17 02:24
Normal topic Incorrect Jump being set in RosettaScripts docking mover
by weehee » Fri, 2012-06-08 10:23
6
7,794 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rotamers used in fixbb
by lanselibai » Thu, 2014-11-06 02:47
6
6,261 by lanselibai
Tue, 2014-11-11 15:28
Normal topic rosetta_2013wk52: make_fragments.pl failed
by fred » Thu, 2014-01-30 12:41
6
8,766 by rmoretti
Fri, 2014-02-07 08:01
Normal topic scoring of beta sandwich protein
by attesor » Mon, 2014-11-17 08:24
6
6,219 by rmoretti
Thu, 2014-11-20 10:46
Normal topic How to define pi-pi stacking in cst file?
by lzx32 » Mon, 2011-07-04 23:47
6
8,297 by lzx32
Mon, 2014-04-21 06:47
Normal topic Comparative modeling stops with "no more batches to process... " / no output
by eskici » Tue, 2012-08-28 12:13
6
6,437 by eskici
Mon, 2014-04-21 06:47
Normal topic CS-HM-Rosetta
by pwurm » Thu, 2013-03-07 12:56
6
7,282 by Marius1987
Fri, 2016-02-05 07:20
Normal topic ab inito memberane(error in alignblast.pl)
by kingljy » Tue, 2011-05-03 23:41
6
7,253 by karthishanmugam
Mon, 2014-04-21 06:47
Normal topic Abinitio (3.4) Error: no fragment to compute secondary structure
by skovacs » Tue, 2012-09-18 13:49
6
7,725 by skovacs
Mon, 2014-04-21 06:47
Normal topic Problem with hotspot constraints.
by jarek » Wed, 2012-10-17 03:22
6
5,951 by xfliu
Mon, 2014-04-21 06:47
Normal topic Line search failed even after resetting Hessian
by Loki01 » Wed, 2017-12-13 16:52
6
6,147 by Loki01
Thu, 2018-02-15 13:54
Normal topic protein docking failed
by albumns » Thu, 2012-11-08 02:59
6
6,310 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Missing "Bio.PDB" module when running "remove_loop_coords.py"
by lanselibai » Mon, 2014-09-29 04:34
6
10,402 by lanselibai
Wed, 2014-10-01 02:13
Normal topic Help with enzyme design
by lzx32 » Fri, 2011-04-08 22:29
6
6,701 by lzx32
Mon, 2014-04-21 06:47
Normal topic Is Biopython required to run pdb_renumber.py?
by ljjjxay » Wed, 2023-11-22 20:00
6
893 by ljjjxay
Wed, 2023-12-06 19:24
Normal topic Ensemble Docking in Rosetta3.5?
by protos_heis » Fri, 2015-05-22 06:42
7
8,731 by protos_heis
Mon, 2015-06-08 07:00
Normal topic "ddg_monomer.linuxgccrelease" by following "High Resolution Protocol"
by lanselibai » Wed, 2014-10-01 09:54
7
11,010 by lanselibai
Sat, 2015-01-03 08:18
Normal topic neutral N-term and C-term
by nawsad » Sun, 2013-06-09 10:20
7
9,212 by helenah
Thu, 2020-10-08 05:29
Normal topic ddg_monomer consumes massive RAM
by cossio » Fri, 2018-03-09 17:02
7
6,505 by rmoretti
Mon, 2018-03-19 12:12
Normal topic RosettaRemodel can not work now?
by myputer » Tue, 2013-08-13 16:56
7
7,700 by rmoretti
Mon, 2014-04-21 06:48
Normal topic About scorefunction.
by Run » Mon, 2013-09-09 23:08
7
7,789 by rmoretti
Mon, 2014-04-21 06:48
Normal topic variable length fragments for Ab initio
by attesor » Wed, 2015-07-01 06:13
7
7,201 by rmoretti
Tue, 2015-08-18 16:47
Normal topic Problem about energy score
by tfliu » Tue, 2013-11-05 02:09
7
7,888 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic How can I prevent coordinates shift when using "loopmodel.linuxgccrelease"?
by lanselibai » Tue, 2014-11-04 14:56
7
7,925 by lanselibai
Wed, 2014-11-12 11:17
Normal topic ERROR: Unable to fill in missing atoms.
by mieczyslaw » Tue, 2020-10-20 09:43
7
6,612 by rayyoung
Thu, 2021-11-18 10:13
Normal topic where is pdb2vall.py
by tevang » Thu, 2013-01-24 13:35
7
7,206 by dktest
Mon, 2014-04-21 06:47
Normal topic SnugDocking a VHH:antigen complex possible?
by David Weis » Thu, 2017-02-16 05:57
7
6,215 by rmoretti
Thu, 2017-07-06 13:00
Normal topic Can rosetta generate a centroid model based on the rna sequence?
by yels » Fri, 2021-03-26 04:06
7
3,276 by yels
Wed, 2021-03-31 18:31
Normal topic H3 modeling takes 10 days more?
by jessye » Fri, 2017-10-27 03:11
7
5,499 by jessye
Fri, 2017-11-03 20:15
Normal topic Fragment files for membrane_abinitio application
by sumukh21 » Sun, 2011-02-13 20:34
7
7,057 by yarovoy
Mon, 2014-04-21 06:47
Normal topic modeling phosphorylated residue
by rosetter » Fri, 2011-03-18 08:13
7
8,741 by smlewis
Mon, 2014-04-21 06:47
Normal topic running in MPI mode and multiple scores per output PDB file?
by dantimatter » Wed, 2019-10-30 09:42
7
5,318 by dantimatter
Wed, 2019-11-06 09:51
Normal topic How to find cluster core structure?
by assignfit » Thu, 2012-03-29 20:35
7
7,518 by attesor
Wed, 2017-06-14 07:32
Normal topic Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring
by brspurri » Wed, 2017-03-29 13:19
7
6,606 by matteoferla
Mon, 2021-07-19 06:13
Normal topic Write one's own constraint type
by djpittdj » Thu, 2012-11-08 12:29
7
6,815 by smlewis
Mon, 2014-04-21 06:47
Normal topic Abinitio Relax Error from -kill_hairpins
by attesor » Tue, 2014-10-28 05:33
7
7,758 by rmoretti
Tue, 2014-11-04 10:28
Normal topic Inserting residues using RosettaRemodel
by eleishaj » Tue, 2015-11-24 08:54
7
8,676 by eyong123
Wed, 2015-12-09 07:17
Normal topic How to write down a connection between ligand's atom and metal ion from enzyme?
by Corvin » Mon, 2021-02-15 06:54
7
3,729 by aloshbau
Mon, 2021-03-01 20:06
Normal topic suppress pdb output from backrub
by attesor » Mon, 2014-10-27 11:16
7
7,354 by rmoretti
Mon, 2014-11-03 15:47
Normal topic protein structure prediction using relax -- high-powered jobs
by rfieldhouse » Mon, 2011-05-30 18:29
7
7,877 by dimaio
Mon, 2014-04-21 06:47
Normal topic Rosetta scoring
by Dimitrov » Thu, 2012-09-20 01:54
7
10,104 by attesor
Mon, 2014-04-21 06:47
Normal topic If "clustering.py" can be used for PDBs contain two chains?
by lanselibai » Wed, 2014-11-05 06:05
7
7,323 by lanselibai
Tue, 2014-12-02 09:43
Normal topic segmentation fault after core.kinematics.FoldTree in homology modeling
by pdbb » Mon, 2012-10-08 14:27
7
7,665 by rmoretti
Mon, 2014-04-21 06:47
Normal topic SnugDock - What protocol should I use?
by dfcoelho » Tue, 2018-11-27 07:32
8
7,671 by dfcoelho
Wed, 2018-11-28 08:07
Normal topic errors about RIFdocking
by sia » Sun, 2022-07-24 20:45
8
3,004 by Minghui-Du
Sun, 2024-03-24 21:12
Normal topic demo of molecular replacement with rosetta (mr_rosetta)
by wenchangyu2008 » Sun, 2011-03-20 05:23
8
11,406 by astrofunk12
Mon, 2014-04-21 06:47
Normal topic Adding bridged water interaction in constraint file
by purvi24 » Thu, 2019-02-28 07:01
8
5,464 by purvi24
Mon, 2019-03-11 06:43
Normal topic Converting -patch replonly residues to original sequence
by subha » Mon, 2017-06-26 13:39
8
6,325 by smlewis
Tue, 2017-07-04 15:42
Normal topic Question about running scallo
by danbo » Mon, 2021-11-29 23:25
8
3,733 by danbo
Wed, 2021-12-22 23:51
Normal topic Problems with Ligand Docking
by saxen » Fri, 2011-08-19 00:19
8
9,015 by glemmon
Mon, 2014-04-21 06:47
Normal topic Multistate design on Rosetta - no generations produced
by tong » Wed, 2018-06-13 00:36
8
5,655 by smlewis
Thu, 2018-06-14 10:26
Normal topic fixbb design using damped LJ
by Anonymous » Fri, 2012-08-17 03:51
8
8,105 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Fold tree C->N: RosettaScripts
by aroop » Wed, 2013-02-13 10:31
8
8,293 by smlewis
Mon, 2014-04-21 06:47
Normal topic InterfaceAnalyzer:“too many tries in fill_missing_atoms!”
by mxp » Tue, 2019-08-06 00:41
8
7,084 by mxp
Mon, 2019-08-12 18:42
Normal topic to create the template pdb file
by benniu2004 » Sat, 2012-12-29 23:04
8
8,834 by benniu2004
Mon, 2014-04-21 06:47
Normal topic Why do non proten ligands get a very high score in kinematic loop modeling/ in general?
by a_s_a » Wed, 2011-06-15 00:03
8
8,146 by a_s_a
Mon, 2014-04-21 06:47
Normal topic Syntax to build a silent file
by lanselibai » Fri, 2014-09-26 09:13
8
10,155 by lanselibai
Tue, 2014-09-30 03:45
Normal topic Noncanonical amino acids
by wsgosal » Tue, 2014-03-18 05:29
8
7,733 by e3lm
Thu, 2022-05-26 12:51
Normal topic [SOLVED]core.io.silent: [ WARNING ] ...
by fred » Wed, 2011-10-05 07:38
8
8,244 by fred
Mon, 2014-04-21 06:47
Normal topic fix the left part doesn't work
by albumns » Wed, 2012-11-07 00:02
9
7,251 by albumns
Mon, 2014-04-21 06:47
Normal topic Runnig Abinitio & score app
by Gaurav_kumar » Wed, 2011-11-23 20:45
9
11,880 by rmoretti
Mon, 2014-04-21 06:47
Normal topic RosettaDock - Constraints File
by edpryor » Wed, 2012-09-19 06:23
9
12,909 by joeg
Mon, 2014-04-21 06:47
Normal topic problems in InterfaceAnalyzer analysis
by chenchaozhao » Fri, 2011-12-02 23:36
9
8,904 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ab-initio peptide-protein docking
by suhail » Sun, 2013-06-23 16:20
9
12,212 by rmoretti
Fri, 2016-04-29 08:57
Normal topic cryptic error message from remodel in rosetta_scripts
by petrikigor » Mon, 2012-12-03 15:13
9
8,927 by petrikigor
Mon, 2014-04-21 06:47
Normal topic loop re-modeling std::out_of_range
by rlwoltz » Tue, 2013-03-12 18:11
9
9,081 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetry Docking and Clustering with Ligands
by skovacs » Wed, 2012-03-07 16:46
9
11,900 by Anonymous
Mon, 2014-04-21 06:47
Normal topic how to fix the ATP HETATM by using movemap or constraint file?
by ziqi1234 » Mon, 2017-11-20 06:43
9
7,246 by ziqi1234
Wed, 2017-11-22 06:21
Normal topic Including waters in RosettaCM
by ajkal » Thu, 2017-04-27 11:59
9
7,920 by rpavlov
Tue, 2017-06-06 11:45
Normal topic ab initio membrane error (frag9 file...)
by almeida » Mon, 2012-07-30 08:53
9
9,761 by rmoretti
Tue, 2014-08-12 08:15
Normal topic ORBITAL records in self generated .params (ligands)
by ast » Thu, 2014-03-06 07:22
9
9,376 by ast
Thu, 2014-03-13 07:17
Normal topic RAbD with N-term,Proline-like ncaa returns segmentation fault during CCDEndsGraftMover
by CordycepsLin » Sun, 2022-02-06 19:09
9
3,829 by CordycepsLin
Wed, 2022-02-09 19:39
Normal topic RosettaDNA error
by deltag » Fri, 2012-12-07 06:09
10
10,016 by deltag
Mon, 2014-04-21 06:47
Normal topic how to repacking loop while freezing other residues?
by jfhuang » Wed, 2012-07-25 06:59
10
9,004 by jfhuang
Mon, 2014-04-21 06:47
Normal topic fixing disulfides in homolgy modeling
by pdbb » Wed, 2013-02-13 11:43
10
12,218 by kamau
Mon, 2014-09-22 09:39
Normal topic Don't know how to extract scores from a RNA de novo silent file.
by Basantab » Wed, 2011-11-23 17:27
10
10,226 by smlewis
Mon, 2014-04-21 06:47
Normal topic A problem with "molfile_to_params.py"
by Rosettasz » Mon, 2013-08-19 19:35
10
11,430 by egecav
Mon, 2021-01-18 05:41
Normal topic Questions for "modeling_instructions.pdf" in "Homology or Loop Modelling"
by lanselibai » Sun, 2014-09-21 09:02
10
11,053 by lanselibai
Tue, 2014-10-07 02:58
Normal topic SEWING and motif file generation
by rbjacob » Thu, 2018-07-12 07:28
10
7,119 by zhangying1990
Tue, 2019-06-04 18:04
Normal topic std::bad_alloc error after changing .xml script?
by chrisHKL » Wed, 2020-03-04 11:44
10
5,815 by jadolfbr
Thu, 2020-03-05 07:02
Normal topic No output pdb files after docking protein and DNA/RNA
by yzq » Thu, 2012-10-25 08:23
11
12,360 by rmoretti
Fri, 2016-06-17 10:22
Normal topic Should FastRelax be commented out in Calculate_protein_protein_ddg demo?
by cossio » Mon, 2016-10-31 12:01
11
9,766 by cossio
Mon, 2016-11-21 07:56
Normal topic XML validation failing
by mb0261 » Fri, 2023-04-14 14:53
11
2,407 by mb0261
Mon, 2023-04-17 17:38
Normal topic ddg_monomer problem
by deltag » Wed, 2012-04-04 07:53
11
12,665 by smlewis
Mon, 2014-04-21 06:47
Normal topic fragment_picker.mpi.linuxgccrelease can't find : libsqlite3.so
by starone » Mon, 2016-06-20 19:22
11
13,843 by starone
Fri, 2016-06-24 18:29
Normal topic How to use -cst_fa_file and -relax:constrain_relax_to_native_coords at the same time
by Anatol » Thu, 2012-11-29 14:12
11
10,800 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta-Holes Scoring Function
by kroberts » Fri, 2011-05-13 14:05
11
15,108 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Abinitio error: ERROR: Value of inactive option accessed: -in:file:frag9
by rlwoltz » Tue, 2012-09-18 14:04
11
16,613 by RAGHURAMAN
Fri, 2014-08-08 02:19
Normal topic Error while running Enzyme Design
by saxen » Fri, 2011-10-21 15:46
11
11,284 by akpole
Mon, 2014-04-21 06:47
Normal topic in silico affinity maturation design
by jarod » Mon, 2013-05-20 02:07
11
12,721 by jarod
Mon, 2014-04-21 06:47
Normal topic -kill_hairpin error
by jadolfbr » Wed, 2011-10-05 18:53
11
17,733 by rmoretti
Mon, 2015-09-28 15:00
Normal topic Where is the RosettaHoles2 executable?
by lah435 » Mon, 2012-06-04 15:15
11
8,975 by smlewis
Mon, 2014-04-21 06:47
Normal topic "score vs RMSD plots" & "cluster models"
by lanselibai » Thu, 2014-09-25 06:51
12
25,028 by lanselibai
Wed, 2014-10-15 01:54
Normal topic Segmentation fault (core dumped) in rosetta_scripts.default.linuxgccrelease after blueprint file reading
by Corvin » Tue, 2020-06-30 00:36
12
9,159 by Corvin
Tue, 2020-11-10 01:22
Normal topic the extracted pdb file
by benniu2004 » Fri, 2013-01-04 17:55
12
14,137 by benniu2004
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax usage (3.4)
by atruong » Fri, 2012-10-12 13:38
12
11,455 by atruong
Mon, 2014-04-21 06:47
Normal topic fragment picker does not follow dihedral constraints
by attesor » Tue, 2016-05-24 23:22
12
11,142 by smlewis
Wed, 2016-08-17 07:56
Normal topic Scoring residue vs. organic ligand
by almeida » Tue, 2014-04-08 12:18
12
13,999 by rmoretti
Thu, 2014-04-24 14:43
Normal topic Surface Docking Application Crash
by dkozuch » Sat, 2017-09-02 18:32
12
8,987 by Anpu
Tue, 2018-09-25 19:06
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