You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
Topic / Topic starter |
Replies | Views | Last post | |
|---|---|---|---|---|
|
backrub application, resfile, and pivot_residues by tylerborrman » Tue, 2016-12-06 14:46 |
0 |
1,155 |
by tylerborrman Tue, 2016-12-06 14:46 |
|
|
auto_setup_metals flag with loop modeling application fails by beowulfey » Wed, 2015-06-10 07:44 |
3 |
3,925 |
by beowulfey Tue, 2015-06-23 16:10 |
|
|
autoNOE peak lists by aep » Thu, 2015-08-06 06:15 |
1 |
2,072 |
by sgourn Tue, 2015-08-18 18:25 |
|
|
assymetric dymer modelling with comparative and ab initio by marcia » Mon, 2013-10-14 08:33 |
3 |
4,647 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
ArchiveManager -- spinning down by Marius1987 » Fri, 2016-12-23 03:10 |
1 |
1,705 |
by smlewis Fri, 2016-12-23 07:04 |
|
|
appropriate sampling for protein docking to a multi chain assembly by SWM » Fri, 2020-01-24 11:22 |
0 |
731 |
by SWM Fri, 2020-01-24 11:22 |
|
|
application for affinity optimization by wentlewi » Fri, 2020-03-13 03:24 |
0 |
879 |
by wentlewi Fri, 2020-03-13 03:24 |
|
|
Any progress on getting intermediate structures during a design? by broomsday » Mon, 2020-03-16 06:46 |
2 |
1,650 |
by vmulligan Tue, 2020-03-17 11:35 |
|
|
Any backrub expert? by johnnytam100 » Fri, 2019-03-01 01:58 |
4 |
3,160 |
by johnnytam100 Sun, 2019-03-03 23:42 |
|
|
antibody_numbering_converter cannot recognize the IMGT scheme by cryosky » Sat, 2020-02-29 23:12 |
4 |
2,623 |
by jadolfbr Sun, 2020-03-01 14:54 |
|
|
antibody.mpi.linuxgccrelease some antibodies failing to model by drewaight » Mon, 2020-11-02 17:07 |
0 |
1,030 |
by drewaight Mon, 2020-11-02 17:07 |
|
|
antibody.linuxgccrelease- output models don't have the same sequence as the input fasta by agctomer » Thu, 2021-01-21 15:35 |
4 |
1,891 |
by agctomer Sun, 2021-01-31 01:06 |
|
|
Antibody Structure Prediction - Error on antibody_H3 step: "Option matching -antibody:remodel not found in command line" by ramon-arg » Mon, 2023-07-24 17:56 |
0 |
86 |
by ramon-arg Mon, 2023-07-24 17:56 |
|
|
Antibody protocol: unusual antibodies, and chainbreaks by Cyril Cros » Mon, 2014-07-21 17:03 |
5 |
5,842 |
by Cyril Cros Tue, 2014-11-25 08:21 |
|
|
antibody protocol fails by hamedkhakzad » Mon, 2019-08-19 07:43 |
1 |
1,284 |
by smlewis Tue, 2019-10-22 09:45 |
|
|
Antibody Modelling by luicui » Mon, 2017-01-23 21:30 |
1 |
2,100 |
by smlewis Mon, 2017-02-06 20:46 |
|
|
antibody modeling error by mxp » Mon, 2019-09-16 18:29 |
2 |
1,720 |
by mxp Mon, 2019-09-23 01:40 |
|
|
Antibody modeling by Maryam_tabasinezhad » Fri, 2015-09-04 11:00 |
4 |
4,678 |
by rmoretti Wed, 2015-09-09 12:08 |
|
|
antibody H3 modelling protocol for nanobody gives "[ ERROR ] Inaccurate G!" messages by AlfredoKCL » Sun, 2021-02-28 16:42 |
2 |
1,175 |
by AlfredoKCL Mon, 2021-03-01 04:07 |
|
|
Antibody Docking application by Maryam_tabasinezhad » Sat, 2015-09-05 09:58 |
1 |
2,218 |
by jadolfbr Wed, 2015-09-09 12:35 |
|
|
antibody - sequence position requested was 0 by jremmel » Mon, 2021-09-27 12:26 |
1 |
1,034 |
by nannemdp Mon, 2021-09-27 14:22 |
|
|
analysis of clustering by loris.moretti » Thu, 2012-04-19 02:52 |
3 |
6,798 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
An error with score app by Genta » Tue, 2019-10-29 18:46 |
0 |
1,273 |
by Genta Tue, 2019-10-29 18:46 |
|
|
ambiguous constraints by shrutikhare » Mon, 2014-05-12 04:42 |
1 |
3,222 |
by rmoretti Mon, 2014-05-12 08:25 |
|
|
Altering substrate specificity by bp » Thu, 2016-12-22 02:45 |
2 |
2,436 |
by bp Thu, 2016-12-22 07:54 |
|
|
Allow region of protein to move in a certain direction by sn » Wed, 2017-08-23 17:07 |
3 |
2,985 |
by rmoretti Thu, 2017-08-24 11:00 |
|
|
algebric library for rosetta by yigallah » Mon, 2014-12-15 08:46 |
0 |
1,302 |
by yigallah Mon, 2014-12-15 08:46 |
|
|
Alanine Scanning for 1 Protein (no interface) by mags33 » Fri, 2019-10-25 10:08 |
2 |
2,127 |
by mags33 Wed, 2019-11-06 09:35 |
|
|
Alanine Scanning by gjbartlett » Mon, 2013-08-05 07:02 |
1 |
3,466 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Adding water interactions when docking a ligand with Rosetta 3.7. by brspurri » Thu, 2017-06-01 09:37 |
2 |
3,157 |
by brspurri Thu, 2017-06-01 10:58 |
|
|
Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo by zharmad » Fri, 2019-08-23 01:16 |
1 |
1,232 |
by everyday847 Fri, 2019-08-23 04:08 |
|
|
Adding bridged water interaction in constraint file by purvi24 » Thu, 2019-02-28 07:01 |
8 |
4,655 |
by purvi24 Mon, 2019-03-11 06:43 |
|
|
Adding 'virtual' residues for N- and C-terminal optimisation by Derek Smith » Thu, 2014-08-14 23:18 |
1 |
2,194 |
by jadolfbr Fri, 2014-10-31 09:00 |
|
|
AddHelixSequenceConstraints Mover2 by Negarsardar » Sat, 2019-06-01 01:54 |
1 |
1,275 |
by vmulligan Thu, 2019-06-13 15:01 |
|
|
AddHelixSequenceConstraints Mover by Negarsardar » Thu, 2019-05-30 03:17 |
2 |
1,625 |
by vmulligan Thu, 2019-06-13 14:59 |
|
|
Add missing residues in loop modeling by exchhattu » Thu, 2013-06-20 17:38 |
1 |
3,476 |
by smlewis Mon, 2014-04-21 06:48 |
|
|
Abrelax - Dunbrack02.lib.bin missing by omirus » Sun, 2011-09-18 06:30 |
3 |
4,684 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
about “protein mimic designer” by sia » Wed, 2022-04-27 19:59 |
0 |
731 |
by sia Wed, 2022-04-27 19:59 |
|
|
About scorefunction. by Run » Mon, 2013-09-09 23:08 |
7 |
7,094 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
About loophash and batchrelax. by Run » Mon, 2013-07-22 23:54 |
14 |
12,319 |
by Run Mon, 2014-04-21 06:48 |
|
|
Abinito for Multimers by Prasanth Kumar » Wed, 2014-01-22 17:45 |
2 |
3,291 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
|
|
AbinitioRelax with native fragments by ks » Mon, 2016-09-05 03:03 |
5 |
4,964 |
by ks Mon, 2016-09-12 03:14 |
|
|
AbinitioRelax usage (3.4) by atruong » Fri, 2012-10-12 13:38 |
12 |
10,465 |
by atruong Mon, 2014-04-21 06:47 |
|
|
AbinitioRelax Disulfide Bonds are not being retained by brspurri » Wed, 2011-09-28 13:55 |
1 |
4,245 |
by parmef Mon, 2014-04-21 06:47 |
|
|
AbinitioRelax detect_disulf_tolerance by aarono » Tue, 2020-06-02 00:13 |
0 |
815 |
by aarono Tue, 2020-06-02 00:13 |
|
|
AbinitioRelax - Error with flags by jmschu » Wed, 2018-11-21 17:36 |
1 |
1,958 |
by rmoretti Fri, 2018-11-23 07:59 |
|
|
Abinitio.relax problem on centos by krlitros87 » Wed, 2014-09-24 11:27 |
4 |
5,508 |
by jadolfbr Tue, 2014-10-07 16:05 |
|
|
Abinitio the Broker protocol by ac.research » Sun, 2019-03-24 03:56 |
1 |
1,420 |
by rmoretti Fri, 2019-04-05 00:18 |
|
|
Abinitio Relax Error from -kill_hairpins by attesor » Tue, 2014-10-28 05:33 |
7 |
7,087 |
by rmoretti Tue, 2014-11-04 10:28 |
|
|
Abinitio protocol and X-Ray diffraction data by allan.ferrari » Wed, 2015-08-12 12:49 |
2 |
2,759 |
by allan.ferrari Fri, 2015-08-28 12:07 |
|
|
Abinitio error: std::out_of_range: basic_string by Harley Worthy » Tue, 2017-10-31 15:20 |
1 |
2,038 |
by Harley Worthy Thu, 2017-11-02 08:53 |
|
|
Abinitio error: ERROR: Value of inactive option accessed: -in:file:frag9 by rlwoltz » Tue, 2012-09-18 14:04 |
11 |
15,450 |
by RAGHURAMAN Fri, 2014-08-08 02:19 |
|
|
Abinitio doesn't run but does not give output or error by Irving » Fri, 2016-10-28 10:04 |
6 |
5,367 |
by rmoretti Mon, 2017-01-23 08:52 |
|
|
Abinitio (3.4) Error: no fragment to compute secondary structure by skovacs » Tue, 2012-09-18 13:49 |
6 |
7,140 |
by skovacs Mon, 2014-04-21 06:47 |
|
|
Ab-initio peptide-protein docking by suhail » Sun, 2013-06-23 16:20 |
9 |
11,412 |
by rmoretti Fri, 2016-04-29 08:57 |
|
|
Ab-initio modeling on part of the protein by xiayanlawrence » Thu, 2013-12-19 07:45 |
1 |
3,311 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
ab inito memberane(error in alignblast.pl) by kingljy » Tue, 2011-05-03 23:41 |
6 |
6,714 |
by karthishanmugam Mon, 2014-04-21 06:47 |
|
|
Ab initio with multiple metal ions by cheyuk » Sun, 2013-12-29 17:58 |
19 |
19,136 |
by masterofpuppets Tue, 2015-01-27 04:26 |
|
|
ab initio protein prediction using homologs by justin » Mon, 2012-02-13 07:52 |
5 |
5,402 |
by justin Mon, 2014-04-21 06:47 |
|
|
ab initio modelling - what to do next? by krlitros87 » Thu, 2014-10-16 13:05 |
2 |
3,185 |
by krlitros87 Wed, 2014-10-22 09:31 |
|
|
ab initio membrane error (frag9 file...) by almeida » Mon, 2012-07-30 08:53 |
9 |
8,967 |
by rmoretti Tue, 2014-08-12 08:15 |
|
|
Ab Initio folding with HEM ligand molecule by jseco » Fri, 2021-03-05 06:49 |
0 |
647 |
by jseco Mon, 2021-03-08 03:40 |
|
|
ab initio by malkeet.singh » Thu, 2018-05-10 05:34 |
3 |
3,094 |
by malkeet.singh Mon, 2018-05-21 04:26 |
|
|
a trouble during floppytail modeling by chenchaozhao » Tue, 2011-03-15 03:59 |
39 |
35,559 |
by smlewis Thu, 2017-06-01 10:02 |
|
|
A question on the logic of enzyme design by agulsevin » Thu, 2013-06-13 08:10 |
2 |
3,845 |
by agulsevin Mon, 2014-04-21 06:48 |
|
|
a question about ligand docking by yzhou » Wed, 2012-05-30 18:57 |
5 |
4,593 |
by yzhou Mon, 2014-04-21 06:47 |
|
|
A problem with RosettaLigand by Rosettasz » Fri, 2013-07-19 16:09 |
16 |
17,985 |
by Rosettasz Mon, 2014-04-21 06:48 |
|
|
A problem with "molfile_to_params.py" by Rosettasz » Mon, 2013-08-19 19:35 |
10 |
10,403 |
by egecav Mon, 2021-01-18 05:41 |
|
|
A problem with "make_fragments.pl" script dependencies by Corvin » Fri, 2019-08-16 04:30 |
2 |
2,222 |
by Corvin Tue, 2019-08-27 00:46 |
|
|
/database folder after running "install_dependencies.pl" size 657 GB? by Danielsebas » Tue, 2019-09-03 03:32 |
1 |
1,210 |
by danpf Tue, 2019-09-03 10:15 |
|
|
-score_app:linmin flag not working by fglaser » Tue, 2011-03-01 06:04 |
5 |
5,150 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
-loops:fa_input not found in command line top-level context by swarekwood » Thu, 2017-08-24 03:15 |
2 |
2,384 |
by swarekwood Fri, 2017-08-25 05:08 |
|
|
-kill_hairpin error by jadolfbr » Wed, 2011-10-05 18:53 |
11 |
16,290 |
by rmoretti Mon, 2015-09-28 15:00 |
|
|
'standard.wts' does not exist by almeida85 » Mon, 2020-09-14 02:26 |
1 |
1,108 |
by rmoretti Mon, 2020-09-14 06:36 |
|
|
"sparks failed" error when running "make_fragments.pl"? by Danielsebas » Tue, 2019-09-03 03:43 |
6 |
3,607 |
by Jacob_Verburgt Tue, 2020-03-10 14:39 |
|
|
"Segmentation fault" for "minirosetta.linuxgccrelease" by lanselibai » Tue, 2014-11-04 03:17 |
1 |
2,681 |
by rmoretti Tue, 2014-11-04 08:53 |
|
|
"score vs RMSD plots" & "cluster models" by lanselibai » Thu, 2014-09-25 06:51 |
12 |
23,123 |
by lanselibai Wed, 2014-10-15 01:54 |
|
|
"Residue 7 was disulfide bonded but had no partner" with antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-06-04 05:53 |
0 |
751 |
by Sunyp_IM Thu, 2020-06-04 05:54 |
|
|
"Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application by xfliu » Thu, 2012-06-21 09:07 |
4 |
4,852 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
"OSError: [Errno 2]” in “clustering.py” by lanselibai » Sat, 2014-10-11 14:30 |
4 |
7,123 |
by lanselibai Fri, 2014-10-17 05:10 |
|
|
"Make_fragments.pl" can't connect to dependencies links by Corvin » Wed, 2019-09-04 23:54 |
2 |
1,993 |
by Corvin Thu, 2019-10-10 01:12 |
|
|
"make" error in "pdb2vall/structure_profile_scripts/DEPTH-CLONE-2.8.7" by Danielsebas » Mon, 2019-09-02 08:14 |
2 |
1,815 |
by Danielsebas Sun, 2019-09-08 02:08 |
|
|
"install_dependencies.pl" script: an optimization of HDD space during nr-pfilt data extracting and formatting stage by Corvin » Thu, 2019-10-10 02:20 |
1 |
1,328 |
by danpf Thu, 2019-10-10 09:55 |
|
|
"Install_dependencies.pl" gives "Aborted" when downloading "nr" database? by Danielsebas » Sat, 2019-09-14 08:53 |
3 |
1,985 |
by danpf Mon, 2019-09-16 09:51 |
|
|
"ddg_monomer.linuxgccrelease" by following "High Resolution Protocol" by lanselibai » Wed, 2014-10-01 09:54 |
7 |
10,255 |
by lanselibai Sat, 2015-01-03 08:18 |
|
|
"core.kinematics.FoldTree" error upon running RAbD by Sunyp_IM » Fri, 2020-06-26 17:27 |
2 |
1,545 |
by Sunyp_IM Fri, 2020-06-26 20:57 |
|
|
"Angle constraint: 0-length bonds" error by purvi24 » Sun, 2019-07-28 10:09 |
1 |
1,409 |
by rmoretti Mon, 2019-08-26 12:49 |
|
|
Unsatisfied interface H-bond in Ligand docking by Prasanth Kumar » Thu, 2013-07-18 12:04 |
1 |
3,988 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
How to run simulations with non-canonical amino acids? by Denise » Thu, 2017-06-08 07:50 |
4 |
3,757 |
by Denise Thu, 2017-06-15 04:26 |
|
|
ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease by cossio » Thu, 2015-09-03 08:46 |
1 |
2,944 |
by rmoretti Fri, 2015-09-04 10:25 |
Log in to post new content in the forum.
