You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
| Topic / Topic starter | Replies |
Views |
Last post | |
|---|---|---|---|---|
|
symmetric docking and constraints by ytao » Thu, 2013-05-02 12:08 |
5 |
7,336 |
by attesor Wed, 2015-10-21 13:53 |
|
|
parameterizing new residues by chiendarret » Fri, 2012-02-03 22:59 |
3 |
7,381 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-' by AG88 » Thu, 2011-11-03 01:25 |
4 |
7,383 |
by weitzner Mon, 2014-04-21 06:47 |
|
|
Why do non proten ligands get a very high score in kinematic loop modeling/ in general? by a_s_a » Wed, 2011-06-15 00:03 |
8 |
7,440 |
by a_s_a Mon, 2014-04-21 06:47 |
|
|
Cannot get a negative score after relax by kxiao » Tue, 2014-01-28 22:28 |
6 |
7,485 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
[SOLVED]core.io.silent: [ WARNING ] ... by fred » Wed, 2011-10-05 07:38 |
8 |
7,499 |
by fred Mon, 2014-04-21 06:47 |
|
|
fixbb design using damped LJ by Anonymous » Fri, 2012-08-17 03:51 |
8 |
7,515 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
Segmentation fault (core dumped) in rosetta_scripts.default.linuxgccrelease after blueprint file reading by Corvin » Tue, 2020-06-30 00:36 |
12 |
7,591 |
by Corvin Tue, 2020-11-10 01:22 |
|
|
Fold tree C->N: RosettaScripts by aroop » Wed, 2013-02-13 10:31 |
8 |
7,617 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Docking with constraints by ytao » Tue, 2013-04-02 09:45 |
6 |
7,620 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How to define pi-pi stacking in cst file? by lzx32 » Mon, 2011-07-04 23:47 |
6 |
7,714 |
by lzx32 Mon, 2014-04-21 06:47 |
|
|
Distinctions between InterfaceAnalyzer and RosettaScript by achambe » Wed, 2015-06-17 10:14 |
6 |
7,737 |
by rmoretti Wed, 2015-09-02 12:43 |
|
|
cluster.mpi.linuxgccrelease failed by fred » Mon, 2014-02-24 12:11 |
3 |
7,769 |
by fred Thu, 2014-03-27 11:29 |
|
|
Inserting residues using RosettaRemodel by eleishaj » Tue, 2015-11-24 08:54 |
7 |
7,860 |
by eyong123 Wed, 2015-12-09 07:17 |
|
|
Surface Docking Application Crash by dkozuch » Sat, 2017-09-02 18:32 |
12 |
7,917 |
by Anpu Tue, 2018-09-25 19:06 |
|
|
Ensemble Docking in Rosetta3.5? by protos_heis » Fri, 2015-05-22 06:42 |
7 |
8,021 |
by protos_heis Mon, 2015-06-08 07:00 |
|
|
cryptic error message from remodel in rosetta_scripts by petrikigor » Mon, 2012-12-03 15:13 |
9 |
8,075 |
by petrikigor Mon, 2014-04-21 06:47 |
|
|
modeling phosphorylated residue by rosetter » Fri, 2011-03-18 08:13 |
7 |
8,084 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
problems in InterfaceAnalyzer analysis by chenchaozhao » Fri, 2011-12-02 23:36 |
9 |
8,085 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Where is the RosettaHoles2 executable? by lah435 » Mon, 2012-06-04 15:15 |
11 |
8,161 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
rosetta_2013wk52: make_fragments.pl failed by fred » Thu, 2014-01-30 12:41 |
6 |
8,172 |
by rmoretti Fri, 2014-02-07 08:01 |
|
|
to create the template pdb file by benniu2004 » Sat, 2012-12-29 23:04 |
8 |
8,216 |
by benniu2004 Mon, 2014-04-21 06:47 |
|
|
Problems with Ligand Docking by saxen » Fri, 2011-08-19 00:19 |
8 |
8,314 |
by glemmon Mon, 2014-04-21 06:47 |
|
|
loop re-modeling std::out_of_range by rlwoltz » Tue, 2013-03-12 18:11 |
9 |
8,317 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
how to repacking loop while freezing other residues? by jfhuang » Wed, 2012-07-25 06:59 |
10 |
8,326 |
by jfhuang Mon, 2014-04-21 06:47 |
|
|
neutral N-term and C-term by nawsad » Sun, 2013-06-09 10:20 |
7 |
8,519 |
by helenah Thu, 2020-10-08 05:29 |
|
|
ORBITAL records in self generated .params (ligands) by ast » Thu, 2014-03-06 07:22 |
9 |
8,578 |
by ast Thu, 2014-03-13 07:17 |
|
|
Should FastRelax be commented out in Calculate_protein_protein_ddg demo? by cossio » Mon, 2016-10-31 12:01 |
11 |
8,765 |
by cossio Mon, 2016-11-21 07:56 |
|
|
Rosetta residue design for DNA binding by deltag » Wed, 2012-12-12 11:35 |
5 |
8,834 |
by deltag Mon, 2014-04-21 06:47 |
|
|
Parse error while reading in XML file in ROSETTA Scripts by rweisse » Fri, 2014-08-29 03:24 |
5 |
8,935 |
by a-eatemadi@razi... Sun, 2017-08-06 03:49 |
|
|
ab initio membrane error (frag9 file...) by almeida » Mon, 2012-07-30 08:53 |
9 |
8,962 |
by rmoretti Tue, 2014-08-12 08:15 |
|
|
Folppy Tail and Constraints by sfulad2 » Fri, 2017-05-12 12:23 |
15 |
9,159 |
by smlewis Fri, 2017-09-08 09:16 |
|
|
RosettaDNA error by deltag » Fri, 2012-12-07 06:09 |
10 |
9,244 |
by deltag Mon, 2014-04-21 06:47 |
|
|
Syntax to build a silent file by lanselibai » Fri, 2014-09-26 09:13 |
8 |
9,312 |
by lanselibai Tue, 2014-09-30 03:45 |
|
|
Rosetta scoring by Dimitrov » Thu, 2012-09-20 01:54 |
7 |
9,328 |
by attesor Mon, 2014-04-21 06:47 |
|
|
docking energies - deltadeltaG calculation by ast » Fri, 2013-07-19 07:30 |
5 |
9,393 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Don't know how to extract scores from a RNA de novo silent file. by Basantab » Wed, 2011-11-23 17:27 |
10 |
9,436 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Camelid antibody (VHH) modelling by Ayoub Ksouri » Tue, 2017-04-04 22:52 |
13 |
9,679 |
by Ayoub Ksouri Wed, 2017-04-19 15:16 |
|
|
Missing "Bio.PDB" module when running "remove_loop_coords.py" by lanselibai » Mon, 2014-09-29 04:34 |
6 |
9,782 |
by lanselibai Wed, 2014-10-01 02:13 |
|
|
How to use -cst_fa_file and -relax:constrain_relax_to_native_coords at the same time by Anatol » Thu, 2012-11-29 14:12 |
11 |
9,981 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
fragment picker does not follow dihedral constraints by attesor » Tue, 2016-05-24 23:22 |
12 |
10,111 |
by smlewis Wed, 2016-08-17 07:56 |
|
|
Questions for "modeling_instructions.pdf" in "Homology or Loop Modelling" by lanselibai » Sun, 2014-09-21 09:02 |
10 |
10,221 |
by lanselibai Tue, 2014-10-07 02:58 |
|
|
"ddg_monomer.linuxgccrelease" by following "High Resolution Protocol" by lanselibai » Wed, 2014-10-01 09:54 |
7 |
10,249 |
by lanselibai Sat, 2015-01-03 08:18 |
|
|
Error while running Enzyme Design by saxen » Fri, 2011-10-21 15:46 |
11 |
10,335 |
by akpole Mon, 2014-04-21 06:47 |
|
|
A problem with "molfile_to_params.py" by Rosettasz » Mon, 2013-08-19 19:35 |
10 |
10,396 |
by egecav Mon, 2021-01-18 05:41 |
|
|
AbinitioRelax usage (3.4) by atruong » Fri, 2012-10-12 13:38 |
12 |
10,461 |
by atruong Mon, 2014-04-21 06:47 |
|
|
demo of molecular replacement with rosetta (mr_rosetta) by wenchangyu2008 » Sun, 2011-03-20 05:23 |
8 |
10,612 |
by astrofunk12 Mon, 2014-04-21 06:47 |
|
|
Errors in Getting Erraser to run by belousoff » Thu, 2017-06-01 16:13 |
15 |
11,022 |
by belousoff Mon, 2017-06-26 16:46 |
|
|
Runnig Abinitio & score app by Gaurav_kumar » Wed, 2011-11-23 20:45 |
9 |
11,107 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Symmetry Docking and Clustering with Ligands by skovacs » Wed, 2012-03-07 16:46 |
9 |
11,131 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
fixing disulfides in homolgy modeling by pdbb » Wed, 2013-02-13 11:43 |
10 |
11,307 |
by kamau Mon, 2014-09-22 09:39 |
|
|
No output pdb files after docking protein and DNA/RNA by yzq » Thu, 2012-10-25 08:23 |
11 |
11,359 |
by rmoretti Fri, 2016-06-17 10:22 |
|
|
[SOLVED] swamped memory by fred » Fri, 2011-09-16 08:19 |
13 |
11,377 |
by fred Mon, 2014-04-21 06:47 |
|
|
Ab-initio peptide-protein docking by suhail » Sun, 2013-06-23 16:20 |
9 |
11,399 |
by rmoretti Fri, 2016-04-29 08:57 |
|
|
ddg_monomer problem by deltag » Wed, 2012-04-04 07:53 |
11 |
11,596 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
in silico affinity maturation design by jarod » Mon, 2013-05-20 02:07 |
11 |
11,824 |
by jarod Mon, 2014-04-21 06:47 |
|
|
RosettaDock - Constraints File by edpryor » Wed, 2012-09-19 06:23 |
9 |
12,054 |
by joeg Mon, 2014-04-21 06:47 |
|
|
About loophash and batchrelax. by Run » Mon, 2013-07-22 23:54 |
14 |
12,303 |
by Run Mon, 2014-04-21 06:48 |
|
|
fragment_picker.mpi.linuxgccrelease can't find : libsqlite3.so by starone » Mon, 2016-06-20 19:22 |
11 |
12,420 |
by starone Fri, 2016-06-24 18:29 |
|
|
How to model missing residues on a protein from multiple PDB files? by cossio » Fri, 2015-08-21 07:18 |
6 |
12,512 |
by rmoretti Fri, 2015-09-11 13:27 |
|
|
loop_length_changing by lanselibai » Tue, 2014-10-14 04:10 |
14 |
12,878 |
by lanselibai Fri, 2014-11-07 02:06 |
|
|
Scoring residue vs. organic ligand by almeida » Tue, 2014-04-08 12:18 |
12 |
12,994 |
by rmoretti Thu, 2014-04-24 14:43 |
|
|
the extracted pdb file by benniu2004 » Fri, 2013-01-04 17:55 |
12 |
13,121 |
by benniu2004 Mon, 2014-04-21 06:47 |
|
|
Rosetta-Holes Scoring Function by kroberts » Fri, 2011-05-13 14:05 |
11 |
13,992 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Single Strand DNA (ssDNA) 3D structure prediction by mkoohim » Fri, 2012-04-06 00:52 |
4 |
14,142 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Problems when running Rosetta VIP with cofactors by Basantab » Fri, 2013-04-26 13:31 |
14 |
14,149 |
by Basantab Mon, 2014-04-21 06:47 |
|
|
membrane scoring function performance by tevang » Wed, 2013-03-20 08:40 |
15 |
14,305 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Fixbb Multiple Resfiles by protos_heis » Mon, 2012-10-15 10:34 |
18 |
14,309 |
by protos_heis Mon, 2014-04-21 06:47 |
|
|
FloppyTail bugs for N-terminal tails by Dave C » Thu, 2012-03-01 13:06 |
18 |
14,955 |
by bbarryabc Mon, 2014-04-21 06:47 |
|
|
rosettaCM not recognizing Mn atom by banshee » Mon, 2016-09-12 23:33 |
20 |
15,325 |
by rmoretti Wed, 2018-11-21 15:45 |
|
|
Abinitio error: ERROR: Value of inactive option accessed: -in:file:frag9 by rlwoltz » Tue, 2012-09-18 14:04 |
11 |
15,435 |
by RAGHURAMAN Fri, 2014-08-08 02:19 |
|
|
ddg_monomer mutations list: How to specify chain ID? by cossio » Tue, 2014-12-09 14:26 |
13 |
15,835 |
by rmoretti Thu, 2016-04-28 16:43 |
|
|
usage of score3 by Run » Sat, 2013-09-28 02:06 |
16 |
16,165 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
|
-kill_hairpin error by jadolfbr » Wed, 2011-10-05 18:53 |
11 |
16,250 |
by rmoretti Mon, 2015-09-28 15:00 |
|
|
Run AbinitioRelax (rosetta 3.3) on cluster by grisha » Mon, 2011-12-12 14:20 |
18 |
16,733 |
by grisha Mon, 2014-04-21 06:47 |
|
|
homology modeling with end extension by fred » Mon, 2012-10-08 14:19 |
19 |
16,760 |
by xpzhang Mon, 2014-04-21 06:47 |
|
|
Garbled Ligands from docking_protocol by skovacs » Tue, 2011-12-20 07:55 |
21 |
17,945 |
by skovacs Mon, 2014-04-21 06:47 |
|
|
A problem with RosettaLigand by Rosettasz » Fri, 2013-07-19 16:09 |
16 |
17,956 |
by Rosettasz Mon, 2014-04-21 06:48 |
|
|
Rosetta Scripts: Loop Modeling w. Selective Repacking by aroop » Mon, 2013-01-07 08:45 |
24 |
18,348 |
by aroop Mon, 2014-04-21 06:47 |
|
|
Ab initio with multiple metal ions by cheyuk » Sun, 2013-12-29 17:58 |
19 |
19,119 |
by masterofpuppets Tue, 2015-01-27 04:26 |
|
|
What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"? by lanselibai » Fri, 2014-10-17 06:06 |
3 |
20,799 |
by rmoretti Fri, 2014-10-17 10:17 |
|
|
ddG calculation by malkeet.singh » Sun, 2017-06-25 07:53 |
32 |
22,642 |
by malkeet.singh Tue, 2017-11-14 04:33 |
|
|
Syntax for relax.linuxgccrelease by lanselibai » Wed, 2014-09-24 04:34 |
18 |
22,860 |
by lanselibai Tue, 2014-12-02 09:46 |
|
|
"score vs RMSD plots" & "cluster models" by lanselibai » Thu, 2014-09-25 06:51 |
12 |
23,076 |
by lanselibai Wed, 2014-10-15 01:54 |
|
|
csrosetta.org login by jfeuva » Tue, 2014-12-09 14:49 |
0 |
24,311 |
by jfeuva Tue, 2014-12-09 14:49 |
|
|
some application troubles when using resfile flag by chenchaozhao » Tue, 2011-04-05 00:05 |
24 |
25,193 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Error with recognizing rotamer library atoms by oerbilgin » Fri, 2011-11-04 15:23 |
19 |
27,392 |
by oerbilgin Mon, 2014-04-21 06:47 |
|
|
a trouble during floppytail modeling by chenchaozhao » Tue, 2011-03-15 03:59 |
39 |
35,529 |
by smlewis Thu, 2017-06-01 10:02 |
|
|
Fastsaxs by Pernille » Mon, 2013-07-22 07:29 |
14 |
36,732 |
by rmoretti Mon, 2021-06-14 12:56 |
|
|
multiple template homolgy modelling (Page: 1, 2)
by pdbb » Tue, 2012-10-30 08:12 |
51 |
56,027 |
by rmoretti Fri, 2018-05-18 12:40 |
Log in to post new content in the forum.
