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Rosetta 3 - Applications
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hbond_sr_bb and hbond_lr_bb for different chains by tylerborrman » Tue, 2020-10-13 13:41 |
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1,535 |
by tylerborrman Tue, 2021-02-09 16:33 |
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Rosetta antibody- modeling in the presense of an antigen by agctomer » Mon, 2021-02-01 03:19 |
4 |
1,757 |
by nannemdp Wed, 2021-02-03 08:52 |
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antibody.linuxgccrelease- output models don't have the same sequence as the input fasta by agctomer » Thu, 2021-01-21 15:35 |
4 |
1,883 |
by agctomer Sun, 2021-01-31 01:06 |
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Modelling humanized camelid like antibody by terabithia2011 » Tue, 2021-01-26 10:12 |
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721 |
by terabithia2011 Tue, 2021-01-26 10:12 |
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Creating fragment files for proteins less than 27 aa in length by Poladu » Tue, 2021-01-26 07:50 |
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710 |
by Poladu Tue, 2021-01-26 07:50 |
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Question with rosetta AbPredict tutorial by terabithia2011 » Mon, 2021-01-25 09:24 |
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676 |
by terabithia2011 Mon, 2021-01-25 09:24 |
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[Solved] Resetting a pose with RigidBodyTransMover by bjharris » Wed, 2021-01-13 14:01 |
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924 |
by bjharris Fri, 2021-01-22 17:34 |
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manually defining CDRs in antibody modelling by gard.nelson » Fri, 2020-07-10 13:31 |
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1,116 |
by brspurri Wed, 2021-01-20 08:11 |
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RosettaAntibody - No matching templates for CDR1 by agctomer » Tue, 2021-01-19 22:45 |
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785 |
by agctomer Tue, 2021-01-19 22:45 |
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[Solved] RosettaAntibody3 - Grafting step is failing to detect H3 from the input sequence by brspurri » Mon, 2021-01-04 16:46 |
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1,125 |
by brspurri Mon, 2021-01-18 18:14 |
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A problem with "molfile_to_params.py" by Rosettasz » Mon, 2013-08-19 19:35 |
10 |
10,396 |
by egecav Mon, 2021-01-18 05:41 |
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relax.linuxgccrelease in multiple processors by jpfuenzalidawx » Thu, 2021-01-14 14:07 |
5 |
2,440 |
by jadolfbr Fri, 2021-01-15 08:06 |
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Writing down properties for new atom types by Corvin » Tue, 2021-01-12 04:30 |
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601 |
by Corvin Wed, 2021-01-13 04:00 |
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constraints in Rosetta ligand docking (AddorRemoveMatchCsts, Addconstraints Mover, and ConstraintSetMover) by rohi » Mon, 2021-01-11 13:32 |
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883 |
by rohi Mon, 2021-01-11 13:58 |
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Design of multimeric protein by ldlamini » Mon, 2021-01-11 07:23 |
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735 |
by ldlamini Mon, 2021-01-11 07:23 |
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Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)? by Corvin » Wed, 2020-12-16 04:58 |
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852 |
by Corvin Wed, 2020-12-30 09:21 |
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RemodelMover and Input Pose by ozyo » Tue, 2020-12-29 09:41 |
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759 |
by ozyo Tue, 2020-12-29 09:41 |
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protein-ligand docking rescoring with interfaceAnalyzer by syntekabio2019 » Sat, 2020-12-19 03:59 |
2 |
1,232 |
by syntekabio2019 Sun, 2020-12-20 21:10 |
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flexpepdcok of lipid conjugated peptide with glyco protein. by ravi.thakkkar369 » Fri, 2020-12-18 13:00 |
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642 |
by ravi.thakkkar369 Fri, 2020-12-18 13:00 |
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where is generate_ligens.linuxgccrelease? by Nicole Deng » Thu, 2020-12-03 00:00 |
2 |
1,435 |
by Nicole Deng Fri, 2020-12-18 00:28 |
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pepspec anchor dock by Astghik » Tue, 2020-10-20 05:31 |
6 |
2,927 |
by Pappmaschee Thu, 2020-12-17 02:24 |
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Error when using Remodel on a protein with a chemically bound ligand by Pappmaschee » Wed, 2020-12-16 09:23 |
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946 |
by Pappmaschee Wed, 2020-12-16 09:23 |
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RosettaScripts filter BuriedUnsatHbonds2 missing still by zdaw » Fri, 2020-12-11 12:39 |
3 |
1,552 |
by zdaw Tue, 2020-12-15 15:38 |
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RNA modeling with step wise Monte Carlo error by szcshr123 » Mon, 2020-12-07 18:08 |
3 |
1,597 |
by everyday847 Wed, 2020-12-09 21:46 |
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Can I believe the antibody design result? by Sunyp_IM » Mon, 2020-11-30 03:29 |
6 |
2,700 |
by jadolfbr Sun, 2020-12-06 17:41 |
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Error: in membrane docking : Cannot split pose by membrane jump! Quitting... by Astghik » Tue, 2020-11-24 05:27 |
2 |
1,355 |
by Astghik Thu, 2020-12-03 02:35 |
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Undesirable behaviour of PoseFromSFRBuilder regarding Hydrogen atoms by Corvin » Wed, 2020-12-02 04:00 |
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994 |
by rmoretti Wed, 2020-12-02 07:27 |
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polymer docking using rosetta scripts by syntekabio2019 » Fri, 2020-11-27 01:51 |
1 |
1,041 |
by rmoretti Fri, 2020-11-27 10:47 |
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Prevention of the negatively charged Nitrogen protonation by coupled_moves by Corvin » Wed, 2020-11-18 02:56 |
4 |
2,109 |
by Corvin Wed, 2020-11-25 02:58 |
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RosettaMP: issue with generating .lips4 file by ksy141 » Mon, 2019-01-21 17:17 |
5 |
3,076 |
by noahC_noahDo Fri, 2020-11-20 11:29 |
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How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure? by Sunyp_IM » Sun, 2020-11-08 08:07 |
5 |
2,705 |
by Brahm Yachnin Wed, 2020-11-18 17:21 |
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debug rosetta_scripts FunFolDes run by tatsiana.bylund » Sun, 2019-08-18 23:17 |
1 |
1,333 |
by neelamraju.srid... Wed, 2020-11-18 05:47 |
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Membrane Abinitio modeling error by jkyan007 » Thu, 2020-10-29 03:30 |
1 |
1,018 |
by noahC_noahDo Tue, 2020-11-17 10:35 |
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Segmentation fault (core dumped) in rosetta_scripts.default.linuxgccrelease after blueprint file reading by Corvin » Tue, 2020-06-30 00:36 |
12 |
7,592 |
by Corvin Tue, 2020-11-10 01:22 |
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Using Rmsd RosettaScripts filter with alignment files by bjharris » Sun, 2020-11-08 15:51 |
1 |
983 |
by rmoretti Sun, 2020-11-08 18:56 |
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core.pose.util: [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard by AlfredoKCL » Sat, 2020-11-07 18:21 |
0 |
1,118 |
by AlfredoKCL Sat, 2020-11-07 18:21 |
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How to add additional rounds of design and optimization in Rosetta scripts? by Nicole Deng » Tue, 2020-11-03 19:05 |
2 |
1,296 |
by Nicole Deng Thu, 2020-11-05 03:04 |
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Speed problem when running RosettaLigand ligand docking by Nicole Deng » Tue, 2019-10-08 04:29 |
2 |
1,974 |
by Nicole Deng Tue, 2020-11-03 19:07 |
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antibody.mpi.linuxgccrelease some antibodies failing to model by drewaight » Mon, 2020-11-02 17:07 |
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1,027 |
by drewaight Mon, 2020-11-02 17:07 |
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not knowing which one of three ways to run rosettascript by xinmiaohe » Tue, 2020-10-13 13:52 |
2 |
1,674 |
by xinmiaohe Mon, 2020-10-19 13:18 |
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Scoring functions: talaris2013 incompatible versions by Smbat » Tue, 2020-10-13 06:18 |
5 |
2,657 |
by Astghik Thu, 2020-10-15 00:48 |
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neutral N-term and C-term by nawsad » Sun, 2013-06-09 10:20 |
7 |
8,519 |
by helenah Thu, 2020-10-08 05:29 |
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Modelling of multi-component symmetrical structures by LanMei » Wed, 2020-10-07 09:58 |
0 |
849 |
by LanMei Wed, 2020-10-07 09:58 |
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minimize_with_cst and convert_to_cst_file for ddG_monomer issues/confusion by Kharlamov1317a » Mon, 2020-09-21 08:46 |
1 |
1,631 |
by Kharlamov1317a Wed, 2020-10-07 08:26 |
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Robetta ab initio - TrRosetta for membrane proteins by benhardy » Wed, 2020-09-30 08:42 |
0 |
1,223 |
by benhardy Wed, 2020-09-30 08:42 |
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Membrane Abinitio modeling by bharat_46010 » Mon, 2017-03-13 22:39 |
1 |
1,594 |
by benhardy Wed, 2020-09-30 04:24 |
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Input structure by Soler » Mon, 2020-09-28 13:18 |
1 |
965 |
by ssrb Tue, 2020-09-29 12:37 |
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NCAA Rotamers for Cyclosporin by marinok » Mon, 2020-09-28 14:11 |
0 |
1,021 |
by marinok Mon, 2020-09-28 14:11 |
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Trouble running MPI docking protocol, please help! by Rob_Barringer » Tue, 2020-08-18 06:40 |
2 |
2,262 |
by Rob_Barringer Fri, 2020-09-25 05:45 |
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RosettaCM or FastRelax? by Tianyang89 » Wed, 2020-09-23 07:46 |
3 |
1,856 |
by danpf Thu, 2020-09-24 13:44 |
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Sequence design with mixed fixbb-relax protocol by kszczepaniak » Thu, 2013-10-03 08:11 |
4 |
5,273 |
by fede Wed, 2020-09-23 11:24 |
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I need some help for using pHDock applications(histidine protonation / pH-dependent binding) by leygkn » Tue, 2020-09-22 18:40 |
1 |
1,087 |
by leygkn Tue, 2020-09-22 22:46 |
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When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error by Martin Floor » Thu, 2020-09-17 06:01 |
4 |
2,337 |
by Martin Floor Tue, 2020-09-22 00:48 |
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Building loop extensions in a membrane protein with Remodel by benhardy » Tue, 2020-06-02 08:21 |
2 |
1,862 |
by benhardy Sun, 2020-09-20 11:15 |
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Pepspec Anchor Dock by Soler » Fri, 2020-09-18 08:09 |
0 |
914 |
by Soler Fri, 2020-09-18 08:09 |
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FASTA for Octopus by Smbat » Wed, 2020-09-16 05:40 |
1 |
1,307 |
by rmoretti Wed, 2020-09-16 22:11 |
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Pepspec Anchor Dock by Soler » Wed, 2020-09-16 19:08 |
0 |
697 |
by Soler Wed, 2020-09-16 19:08 |
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FlexPepDocking by jlawrie » Tue, 2020-09-15 12:52 |
0 |
791 |
by jlawrie Tue, 2020-09-15 12:52 |
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'standard.wts' does not exist by almeida85 » Mon, 2020-09-14 02:26 |
1 |
1,105 |
by rmoretti Mon, 2020-09-14 06:36 |
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Scoring docking error by almeida85 » Wed, 2020-09-02 01:32 |
2 |
1,436 |
by almeida85 Wed, 2020-09-02 06:14 |
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make_fragments.pl error by almeida85 » Mon, 2020-08-31 04:39 |
2 |
1,708 |
by almeida85 Tue, 2020-09-01 01:29 |
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Extracting top score PIPER models by almeida85 » Mon, 2020-08-31 07:17 |
0 |
905 |
by almeida85 Mon, 2020-08-31 07:17 |
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density scoring by Tianyang89 » Sat, 2020-08-29 04:54 |
1 |
1,519 |
by danpf Sun, 2020-08-30 22:23 |
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RosettaAntibody3 - How can I model an extended H3? by brspurri » Fri, 2020-08-28 09:11 |
0 |
732 |
by brspurri Fri, 2020-08-28 09:11 |
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Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB by rlwoltz » Thu, 2019-01-24 19:43 |
3 |
3,775 |
by bjharris Sun, 2020-08-23 14:03 |
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Global Docking with carbohydrates by ChiauShu » Sat, 2020-08-22 20:16 |
0 |
810 |
by ChiauShu Sat, 2020-08-22 20:16 |
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Successful RosettaCM? by jlawrie » Wed, 2020-08-19 06:53 |
2 |
1,547 |
by jlawrie Thu, 2020-08-20 11:00 |
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Fewer than expected structures in clustering output by fabiotrovato » Thu, 2020-08-20 00:59 |
0 |
688 |
by fabiotrovato Thu, 2020-08-20 00:59 |
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RosettaAntibody3 is failing with "Error: no input sequences were specified!" by brspurri » Sun, 2020-08-16 16:16 |
4 |
2,329 |
by brspurri Tue, 2020-08-18 09:57 |
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clustering output file has few structures by fabiotrovato » Mon, 2020-08-17 11:37 |
0 |
655 |
by fabiotrovato Mon, 2020-08-17 11:37 |
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RosettaCM by jlawrie » Fri, 2020-08-14 14:09 |
0 |
1,337 |
by jlawrie Fri, 2020-08-14 14:09 |
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mpirun docking_protocol by NanB » Mon, 2020-08-03 11:38 |
1 |
2,595 |
by ssrb Fri, 2020-08-14 09:18 |
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Docking-I_sc values do not correlate by jlawrie » Wed, 2020-08-12 08:08 |
2 |
1,505 |
by jlawrie Wed, 2020-08-12 08:57 |
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Homology Modeling-no PDB output by jlawrie » Wed, 2020-08-12 06:30 |
2 |
1,584 |
by jlawrie Wed, 2020-08-12 08:56 |
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Modeling-Using RosettaCM by jlawrie » Wed, 2020-08-12 08:46 |
1 |
960 |
by jlawrie Wed, 2020-08-12 08:47 |
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Docking-RMS value nan by jlawrie » Wed, 2020-08-12 07:03 |
2 |
1,533 |
by jlawrie Wed, 2020-08-12 07:27 |
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Error when trying docking protocol with different ligand by scyphs » Wed, 2020-08-05 04:37 |
2 |
1,348 |
by scyphs Mon, 2020-08-10 08:09 |
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how to know the precedure of solving a actural bio problem? like interface design? by qq7678500549 » Thu, 2020-08-06 18:45 |
2 |
1,344 |
by qq7678500549 Sun, 2020-08-09 18:59 |
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De novo water predictions using SPaDES by MNP1986 » Mon, 2019-03-25 07:53 |
1 |
1,619 |
by matteoferla Tue, 2020-08-04 09:30 |
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Bug Report - Encoding issue by daniloboskovic » Tue, 2020-08-04 07:02 |
0 |
636 |
by daniloboskovic Tue, 2020-08-04 07:02 |
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pepspec anchor dock by Andre Serobian » Tue, 2020-07-28 05:51 |
1 |
1,077 |
by Andre Serobian Tue, 2020-07-28 23:26 |
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Zero residues error in docking by cjy318 » Tue, 2020-07-28 19:47 |
0 |
906 |
by cjy318 Tue, 2020-07-28 19:47 |
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RosettaAntibody3 core.pose.util error by linhhoang157 » Tue, 2020-07-28 12:40 |
0 |
880 |
by linhhoang157 Tue, 2020-07-28 12:40 |
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clean_pdb not working by Andre Serobian » Thu, 2020-07-23 04:48 |
3 |
2,170 |
by rmoretti Tue, 2020-07-28 08:24 |
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Comparative modeling of metalloproteins by ctqwong » Sun, 2020-07-12 13:51 |
3 |
1,831 |
by ctqwong Mon, 2020-07-27 01:48 |
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How many iterations of remodel is enough? by daniloboskovic » Thu, 2020-07-16 08:07 |
0 |
707 |
by daniloboskovic Thu, 2020-07-16 08:14 |
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Translate mover chain X doesnot exist. by surya » Thu, 2020-07-09 08:36 |
6 |
2,935 |
by rmoretti Tue, 2020-07-14 10:54 |
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Warning: Fold tree is not set properly for density scoring by ahansel » Mon, 2020-07-13 10:50 |
1 |
1,165 |
by danpf Tue, 2020-07-14 10:27 |
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Problem with mpirun/mpiexec by ahansel » Fri, 2020-07-10 08:37 |
1 |
3,320 |
by rmoretti Fri, 2020-07-10 09:59 |
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Segmentation Fault during prepacking by Sunyp_IM » Fri, 2020-06-12 11:24 |
4 |
2,805 |
by Sunyp_IM Thu, 2020-07-09 18:40 |
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Metal Ion in symmetric design by tschiex » Wed, 2020-07-08 05:28 |
0 |
750 |
by tschiex Wed, 2020-07-08 05:28 |
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PEPSPEC by Neeraj » Wed, 2018-01-03 02:24 |
1 |
1,614 |
by Andre Serobian Wed, 2020-07-08 04:44 |
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Does antibody_numbering_converter support camelid antibody? by mxp » Tue, 2020-07-07 01:21 |
0 |
768 |
by mxp Tue, 2020-07-07 01:21 |
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zero standard deviation of I_sc in protein-protein docking by rohi » Fri, 2020-07-03 22:19 |
0 |
708 |
by rohi Fri, 2020-07-03 22:20 |
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OptimizeMembranePositionMover - This element is not expected by bjharris » Wed, 2020-07-01 23:21 |
2 |
1,643 |
by bjharris Thu, 2020-07-02 11:09 |
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LoopModeler mover unable to determine cut point by gszwabowski » Mon, 2020-06-01 13:12 |
1 |
1,350 |
by matteoferla Thu, 2020-07-02 07:27 |
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ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-07-02 07:05 |
0 |
803 |
by Alison_Yajie Thu, 2020-07-02 07:10 |
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kcenters_clustering_of_fragments by bjharris » Mon, 2019-07-01 16:16 |
1 |
1,339 |
by bjharris Wed, 2020-07-01 23:25 |
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Scoring after HBNet by HHL_SIUC » Wed, 2020-07-01 10:49 |
0 |
721 |
by HHL_SIUC Wed, 2020-07-01 10:49 |
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"core.kinematics.FoldTree" error upon running RAbD by Sunyp_IM » Fri, 2020-06-26 17:27 |
2 |
1,539 |
by Sunyp_IM Fri, 2020-06-26 20:57 |
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