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Rosetta 3 - Applications
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Topic / Topic starter | Replies | Views | Last post | |
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about “protein mimic designer” by sia » Wed, 2022-04-27 19:59 |
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988 |
by sia Wed, 2022-04-27 19:59 |
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crazy loopmodel: linear output pdbs by fred » Wed, 2014-12-03 12:27 |
0 |
1,405 |
by fred Wed, 2014-12-03 12:28 |
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Enzyme Design Not Editing Structure by liuwenxi » Wed, 2022-05-18 10:12 |
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888 |
by liuwenxi Wed, 2022-05-18 10:12 |
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error in loop remodeling by syntekabio2019 » Wed, 2023-04-05 01:00 |
0 |
444 |
by syntekabio2019 Wed, 2023-04-05 01:01 |
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Nanobody design by chandana » Tue, 2022-08-09 20:36 |
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1,210 |
by chandana Tue, 2022-08-09 20:36 |
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Pepspec - sequence sampling by almeida85 » Thu, 2022-06-23 04:05 |
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853 |
by almeida85 Thu, 2022-06-23 05:50 |
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charge grid in rosetta ligand docking using rosetta script by syntekabio2019 » Mon, 2022-01-17 23:53 |
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999 |
by syntekabio2019 Mon, 2022-01-17 23:53 |
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remodel: what are the exact meanings of notations for secondary structure? by lanselibai » Sat, 2015-01-17 04:53 |
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1,522 |
by lanselibai Sat, 2015-01-17 07:57 |
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DDG and interaction score problem by a-eatemadi@razi... » Mon, 2018-04-09 22:54 |
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1,223 |
by a-eatemadi@razi... Mon, 2018-04-09 22:54 |
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Repeatability of DDG calculation by jennifer » Wed, 2015-04-08 05:29 |
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1,624 |
by jennifer Wed, 2015-04-08 05:29 |
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structure prediction by MA » Wed, 2018-09-05 00:50 |
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986 |
by MA Wed, 2018-09-05 00:50 |
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Error reading in/out glycosylated silent file - "Can't create a polymer bond after residue due to incompatible type" by amorin » Mon, 2021-09-27 12:16 |
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933 |
by amorin Mon, 2021-09-27 12:16 |
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protein relax by Alison_Yajie » Tue, 2020-05-19 08:29 |
0 |
897 |
by Alison_Yajie Tue, 2020-05-19 08:29 |
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Grafting using antibody.mpi.linuxgccrelease and specifying custom template which doesnt have pdb id. by SubhaK » Wed, 2023-01-18 23:33 |
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937 |
by SubhaK Wed, 2023-01-18 23:33 |
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score is 0 in the output? - RosettaScripts by chrisHKL » Thu, 2020-03-05 09:33 |
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964 |
by chrisHKL Thu, 2020-03-05 12:58 |
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Issues with modifying dock.xml for multiple ligand docking by DGR95 » Fri, 2021-05-14 12:51 |
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775 |
by DGR95 Fri, 2021-05-14 12:51 |
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Include MHC alpha helices in loop modelling protocol for pMHC complex by Roberto » Thu, 2022-08-04 07:22 |
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836 |
by Roberto Thu, 2022-08-04 07:22 |
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how to generate the whole molecule that contains all the symmetric chains by Sunyp_IM » Sun, 2017-12-10 19:43 |
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1,222 |
by Sunyp_IM Sun, 2017-12-10 19:43 |
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ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-07-02 07:05 |
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902 |
by Alison_Yajie Thu, 2020-07-02 07:10 |
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core.optimization.LineMinimizer: [ ERROR ] Inaccurate G! by aralz » Thu, 2021-02-11 00:46 |
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957 |
by aralz Thu, 2021-02-11 00:46 |
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homology membrane modeling demo in rosetta 3.5 by rlwoltz » Mon, 2013-09-09 10:26 |
1 |
2,896 |
by smlewis Mon, 2014-04-21 06:48 |
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Syntax to extract PDB files from a silent file by lanselibai » Fri, 2014-09-26 13:48 |
1 |
3,939 |
by lanselibai Fri, 2014-09-26 14:58 |
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Using residue patches in AbinitioRelax by kent » Fri, 2018-11-02 11:19 |
1 |
1,934 |
by rmoretti Wed, 2018-11-21 15:40 |
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Failed glycine check when running RosettaRemodel to build disulfide by cheyuk » Fri, 2014-06-27 02:31 |
1 |
2,186 |
by everyday847 Sun, 2014-09-28 21:16 |
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Design a peptide linked to small molecule ligand by shaunmk » Mon, 2015-03-02 09:05 |
1 |
2,571 |
by rmoretti Wed, 2015-03-25 12:39 |
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sequence design to enhance Fc / Fc-g Receptor binding by jarod » Tue, 2017-05-23 09:00 |
1 |
1,774 |
by jadolfbr Thu, 2017-06-01 10:00 |
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heads up for constraints using GAUSSIANFUNC by attesor » Thu, 2015-10-22 07:30 |
1 |
1,978 |
by smlewis Thu, 2015-10-22 08:04 |
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Docking prepack vs. relax by David Weis » Tue, 2017-02-21 05:37 |
1 |
2,186 |
by smlewis Tue, 2017-02-21 07:58 |
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PEPSPEC by Neeraj » Wed, 2018-01-03 02:24 |
1 |
1,812 |
by Andre Serobian Wed, 2020-07-08 04:44 |
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Options for Enzdes RosettaScripts by joeg » Wed, 2014-03-12 09:28 |
1 |
2,966 |
by rmoretti Thu, 2014-03-13 08:04 |
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Segmentation fault when running Abinito Relax by Hongtham » Mon, 2014-12-15 07:16 |
1 |
3,174 |
by rmoretti Fri, 2015-01-02 11:45 |
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Protein/Protein Ddg demo: How to write predicted mutant structures? by cossio » Wed, 2015-11-04 20:14 |
1 |
1,958 |
by rmoretti Tue, 2015-11-10 11:10 |
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running structure prediction with robetta server like automation by dhirajks » Mon, 2018-01-29 21:32 |
1 |
2,141 |
by rmoretti Tue, 2018-01-30 07:51 |
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Highly negative total score by Ruchi_P_Jain » Wed, 2019-04-24 19:55 |
1 |
1,760 |
by nannemdp Thu, 2019-04-25 07:58 |
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mpirun docking_protocol by NanB » Mon, 2020-08-03 11:38 |
1 |
2,877 |
by ssrb Fri, 2020-08-14 09:18 |
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Full Protocol by shekhar » Fri, 2013-10-04 01:07 |
1 |
3,057 |
by rmoretti Mon, 2014-04-21 06:48 |
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Docking with loop rebuilding by kxiao » Sun, 2015-06-28 19:37 |
1 |
2,252 |
by rmoretti Fri, 2015-07-03 14:41 |
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Ddg_monomer: implementing disulfides by kabol » Wed, 2016-11-30 02:39 |
1 |
2,340 |
by rmoretti Wed, 2016-11-30 07:46 |
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docking parse error by dave » Tue, 2018-12-04 08:41 |
1 |
1,964 |
by rmoretti Tue, 2018-12-04 08:55 |
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ERROR: APBS failed to generate the result file. by bhavranek » Sat, 2021-12-18 11:01 |
1 |
1,125 |
by bhavranek Sun, 2021-12-26 21:05 |
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FASTA for Octopus by Smbat » Wed, 2020-09-16 05:40 |
1 |
1,492 |
by rmoretti Wed, 2020-09-16 22:11 |
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relax job failed by albumns » Sat, 2014-07-26 00:21 |
1 |
2,165 |
by rmoretti Sun, 2014-07-27 10:48 |
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ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly' by smiruthi » Mon, 2011-12-12 14:27 |
1 |
2,806 |
by rmoretti Mon, 2014-04-21 06:47 |
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CartesianRefiner compilation problem by DmitriiN » Tue, 2015-12-15 08:52 |
1 |
2,096 |
by rmoretti Tue, 2015-12-15 09:48 |
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Modeling-Using RosettaCM by jlawrie » Wed, 2020-08-12 08:46 |
1 |
1,108 |
by jlawrie Wed, 2020-08-12 08:47 |
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restrain residues in docking by albumns » Sat, 2013-11-02 08:52 |
1 |
2,647 |
by jadolfbr Mon, 2014-04-21 06:48 |
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autoNOE peak lists by aep » Thu, 2015-08-06 06:15 |
1 |
2,253 |
by sgourn Tue, 2015-08-18 18:25 |
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UnfoldedStateEnergyCalculator MPI Error by colin.walsh.brown » Mon, 2017-11-13 09:43 |
1 |
1,974 |
by smlewis Mon, 2017-11-13 10:43 |
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Energy function and iteration script files by michelleqyh » Fri, 2019-09-27 09:06 |
1 |
1,286 |
by smlewis Fri, 2019-09-27 11:54 |
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Add missing residues in loop modeling by exchhattu » Thu, 2013-06-20 17:38 |
1 |
3,655 |
by smlewis Mon, 2014-04-21 06:48 |
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How does the label in pdb files looks like when using ResiduePDBInfoHasLabel? by johnnytam100 » Fri, 2019-08-16 00:25 |
1 |
1,729 |
by JackMaguire Fri, 2019-08-16 07:41 |
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Input structure by Soler » Mon, 2020-09-28 13:18 |
1 |
1,123 |
by ssrb Tue, 2020-09-29 12:37 |
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rosetta scores for mutated structures by harshkhare » Wed, 2011-11-23 09:30 |
1 |
2,836 |
by rmoretti Mon, 2014-04-21 06:47 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Wed, 2016-07-06 10:35 |
1 |
2,090 |
by rmoretti Tue, 2016-07-12 08:56 |
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Question on Designing with NCAAs by salvatta » Mon, 2018-09-10 10:09 |
1 |
1,679 |
by rmoretti Thu, 2018-09-20 09:23 |
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Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively? by johnnytam100 » Fri, 2019-08-23 21:10 |
1 |
1,399 |
by rmoretti Mon, 2019-08-26 12:03 |
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trRosetta - Nan occuring in Hbond calculation by y_atsmonraz » Mon, 2021-10-04 09:16 |
1 |
1,165 |
by shivarawat115 Mon, 2022-04-11 16:10 |
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Flexible docking using rosetta density-fitting for DNA by helm » Thu, 2012-06-14 23:43 |
1 |
2,800 |
by smlewis Mon, 2014-04-21 06:47 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
1 |
3,016 |
by jharamesh Mon, 2014-11-03 12:50 |
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Fast relax not working by eyong123 » Fri, 2017-04-21 06:06 |
1 |
1,968 |
by rmoretti Fri, 2017-04-21 07:41 |
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AddHelixSequenceConstraints Mover2 by Negarsardar » Sat, 2019-06-01 01:54 |
1 |
1,456 |
by vmulligan Thu, 2019-06-13 15:01 |
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several question in mpensemble dock by lluoto » Tue, 2024-03-12 07:54 |
1 |
127 |
by lluoto Tue, 2024-03-19 05:28 |
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protein-protein docking with flexible backbone by tim » Fri, 2013-12-20 05:52 |
1 |
4,392 |
by rmoretti Mon, 2014-04-21 06:48 |
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"Segmentation fault" for "minirosetta.linuxgccrelease" by lanselibai » Tue, 2014-11-04 03:17 |
1 |
2,851 |
by rmoretti Tue, 2014-11-04 08:53 |
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ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease by cossio » Thu, 2015-09-03 08:46 |
1 |
3,168 |
by rmoretti Fri, 2015-09-04 10:25 |
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output file in ddg calcualtion by malkeet.singh » Sun, 2017-12-03 07:59 |
1 |
1,598 |
by malkeet.singh Wed, 2017-12-06 02:02 |
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Unexpected Error with RosettaCM - by terry » Fri, 2019-02-22 14:26 |
1 |
3,324 |
by rmoretti Fri, 2019-03-29 12:25 |
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Enzyme design output silent file and score file by deltag » Fri, 2012-09-28 13:07 |
1 |
2,407 |
by rmoretti Mon, 2014-04-21 06:47 |
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Problem in using "loopmodel" application to add missing residues by sushreet » Wed, 2014-08-27 12:43 |
1 |
2,121 |
by rmoretti Thu, 2014-08-28 09:42 |
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loop modeling scoring by Nicky_Learning_... » Wed, 2015-05-13 20:00 |
1 |
2,740 |
by rmoretti Mon, 2015-05-25 11:30 |
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Using Rmsd RosettaScripts filter with alignment files by bjharris » Sun, 2020-11-08 15:51 |
1 |
1,168 |
by rmoretti Sun, 2020-11-08 18:56 |
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connecting rna strands together by y_atsmonraz » Tue, 2021-11-09 05:42 |
1 |
994 |
by y_atsmonraz Thu, 2021-11-11 04:51 |
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BuildPeptide - Using Phosphorylated and Sulfated Tyrosine by jlawrie » Thu, 2020-09-03 14:29 |
1 |
1,412 |
by cryosky Mon, 2021-03-01 21:37 |
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protein-protein docking by cbala » Mon, 2011-04-18 09:15 |
1 |
2,644 |
by smlewis Mon, 2014-04-21 06:47 |
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Symmetry-aware Backrub? by gamacy » Fri, 2014-11-14 02:18 |
1 |
2,217 |
by rmoretti Tue, 2014-11-18 09:10 |
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Protein Design by ac.research » Wed, 2017-02-15 19:25 |
1 |
2,815 |
by cdbahl Sat, 2017-02-18 13:02 |
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Abinitio the Broker protocol by ac.research » Sun, 2019-03-24 03:56 |
1 |
1,609 |
by rmoretti Fri, 2019-04-05 00:18 |
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Issue with Rosetta LinkResidues Script by adityapadhi » Wed, 2019-11-20 22:00 |
1 |
1,391 |
by JackMaguire Fri, 2019-11-22 13:45 |
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Cannot install DAlphaBall by gerdos » Fri, 2023-10-13 07:55 |
1 |
568 |
by Seongsung Fri, 2023-11-24 04:52 |
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Checkpoint with rosetta3.4 by AmelieH » Mon, 2014-12-01 15:51 |
1 |
2,658 |
by rmoretti Wed, 2014-12-03 19:07 |
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Protein Protein Docking with Constraints by ajaniharesh » Wed, 2019-04-10 07:26 |
1 |
1,684 |
by rmoretti Thu, 2019-05-09 15:40 |
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Resfile as a input for InterfaceAnalyzer by palak8669 » Sun, 2015-06-07 21:46 |
1 |
2,060 |
by smlewis Mon, 2015-06-08 06:35 |
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Problem in redesign binding site by armart999 » Fri, 2016-10-14 01:55 |
1 |
2,357 |
by rmoretti Fri, 2016-10-14 08:42 |
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No interface for protein - Interface Analyzer by aloshbau » Tue, 2013-05-21 21:00 |
1 |
2,851 |
by jarod Mon, 2014-04-21 06:47 |
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Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2 by AJVincelli » Sat, 2018-07-14 13:14 |
1 |
3,390 |
by AJVincelli Sun, 2018-11-25 11:29 |
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cm_scripts by sn » Wed, 2018-02-14 11:00 |
1 |
1,724 |
by rmoretti Wed, 2018-02-21 15:21 |
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Protein-Protein Docking or Comparative Modeling by Morrian_Lynn » Wed, 2020-01-29 19:01 |
1 |
1,372 |
by danpf Fri, 2020-02-21 18:23 |
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Ligand docking cannot open the protein file by swarekwood » Tue, 2017-10-17 08:17 |
1 |
1,621 |
by rmoretti Tue, 2017-10-17 09:03 |
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ddG calculations to study point mutations by N.Chopra » Fri, 2018-12-07 12:36 |
1 |
2,143 |
by jeliazkov Fri, 2018-12-07 12:51 |
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The difference between the H1 regions of modeled camelid antibody and the crystal structure. by Sunyp_IM » Sun, 2020-06-07 02:34 |
1 |
1,346 |
by nannemdp Sun, 2020-06-07 08:01 |
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Holes output interpretation by lah435 » Mon, 2012-06-04 15:02 |
1 |
2,494 |
by smlewis Mon, 2014-04-21 06:47 |
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Connecting linkers by Prasanth Kumar » Tue, 2014-05-06 00:53 |
1 |
3,196 |
by smlewis Mon, 2014-05-12 08:32 |
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Symmetry definition for apolar helix by vanrooyenjason » Tue, 2016-01-05 05:20 |
1 |
3,205 |
by rmoretti Fri, 2016-04-29 09:21 |
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Sampling a wider range of RMSD of poses by Rosetta Dock by johnnytam100 » Tue, 2019-05-21 22:28 |
1 |
1,618 |
by johnnytam100 Thu, 2019-05-23 20:52 |
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Expected density by GabrielDucrocq » Thu, 2022-07-14 06:38 |
1 |
999 |
by matteoferla Wed, 2022-07-20 10:50 |
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Make Fragments by Run » Mon, 2013-11-11 05:31 |
1 |
2,694 |
by smlewis Mon, 2014-04-21 06:48 |
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trouble in floppytail modelling by ytao » Thu, 2013-06-27 13:15 |
1 |
2,476 |
by ytao Mon, 2014-04-21 06:48 |
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debug rosetta_scripts FunFolDes run by tatsiana.bylund » Sun, 2019-08-18 23:17 |
1 |
1,501 |
by neelamraju.srid... Wed, 2020-11-18 05:47 |
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Python2 script in Rosetta3.13 by ddhoyo » Wed, 2021-09-15 04:05 |
1 |
1,209 |
by matteoferla Wed, 2021-09-15 06:04 |
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Alanine Scanning by gjbartlett » Mon, 2013-08-05 07:02 |
1 |
3,666 |
by rmoretti Mon, 2014-04-21 06:48 |
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