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Rosetta 3 - Applications

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Normal topic ProteinInterfaceDesign algorithm questions
by tsztain » Mon, 2019-02-18 14:10
1
1,062 by rmoretti
Sun, 2019-08-25 19:15
Normal topic denovo modelling on a virus-coat protein dimer
by aseem121 » Wed, 2019-10-16 06:55
1
803 by danpf
Wed, 2019-10-16 13:03
Normal topic problem with modelling of protein (140 and 150 residues respectively)
by krlitros87 » Wed, 2014-10-22 09:39
1
1,590 by rmoretti
Thu, 2014-10-23 13:55
Normal topic Ligand creation
by Prasanth Kumar » Fri, 2013-08-02 09:48
1
1,953 by rmoretti
Mon, 2014-04-21 06:48
Normal topic ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly'
by smiruthi » Mon, 2011-12-12 14:27
1
2,233 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Enzyme Design FlexBB Protocol Bug: DNA/RNA handling
by kettner » Fri, 2019-06-14 14:16
1
1,233 by rmoretti
Mon, 2019-06-24 13:46
Normal topic residue_energy_breakdown of a protein-ligand complex.
by sam_dc » Tue, 2021-05-18 04:45
1
351 by rmoretti
Tue, 2021-05-18 07:21
Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
1
2,056 by rmoretti
Mon, 2014-05-12 15:08
Normal topic Snugdock_error
by luicui » Thu, 2017-02-09 21:06
1
1,172 by smlewis
Thu, 2017-02-09 21:50
Normal topic Add missing residues in loop modeling
by exchhattu » Thu, 2013-06-20 17:38
1
2,961 by smlewis
Mon, 2014-04-21 06:48
Normal topic Interface Analyzer Segmentation Fault
by h_trasatti » Tue, 2017-02-21 12:48
1
1,628 by smlewis
Tue, 2017-02-21 14:10
Normal topic Warning: Fold tree is not set properly for density scoring
by ahansel » Mon, 2020-07-13 10:50
1
623 by danpf
Tue, 2020-07-14 10:27
Normal topic Enzyme design output silent file and score file
by deltag » Fri, 2012-09-28 13:07
1
1,882 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Using different number of 9-mers (UPDATED)
by JadAbbass » Mon, 2017-08-28 07:20
1
1,284 by rmoretti
Mon, 2017-09-04 10:33
Normal topic docking with capping groups
by xavierfradera » Sun, 2018-11-04 16:17
1
899 by maral.adeli-kou...
Wed, 2020-01-22 12:41
Normal topic Undesirable behaviour of PoseFromSFRBuilder regarding Hydrogen atoms
by Corvin » Wed, 2020-12-02 04:00
1
475 by rmoretti
Wed, 2020-12-02 07:27
Normal topic Comparative modeling
by MRH » Mon, 2013-08-19 23:08
1
1,955 by smlewis
Mon, 2014-04-21 06:48
Normal topic Flexible docking using rosetta density-fitting for DNA
by helm » Thu, 2012-06-14 23:43
1
2,173 by smlewis
Mon, 2014-04-21 06:47
Normal topic Question on restraining receptor symmetry when docking ligand
by subha » Fri, 2018-07-06 21:59
1
941 by rmoretti
Fri, 2018-08-03 08:16
Normal topic RosettaMatch
by xingqing326 » Mon, 2019-07-22 13:14
1
1,076 by rmoretti
Mon, 2019-08-26 12:57
Normal topic Executing the clean_pdb.py script
by Rkfoury » Fri, 2015-02-20 10:16
1
2,979 by lanselibai
Tue, 2015-02-24 02:36
Normal topic How to use base_pair_constraint for RNA as a constraint term?
by yels » Sat, 2021-04-03 01:19
1
387 by everyday847
Sun, 2021-04-04 12:48
Normal topic Design with limited number of aminoacids at given position
by sdh_h » Sun, 2016-12-04 03:44
1
1,326 by smlewis
Thu, 2016-12-08 15:50
Normal topic dssp
by MA » Thu, 2017-10-05 09:34
1
1,178 by rmoretti
Tue, 2017-10-10 09:54
Normal topic [LoopModelerMover] ERROR: Can't build a fold tree from a loop with an unspecified cut point.
by dgm3 » Sun, 2021-12-26 18:32
1
94 by dgm3
Fri, 2021-12-31 17:42
Normal topic InterfaceAnalyzer -resfile
by gw » Wed, 2011-11-02 16:01
1
2,285 by smlewis
Mon, 2014-04-21 06:47
Normal topic cluster error
by sudhar » Fri, 2011-06-17 05:58
1
2,297 by rmoretti
Mon, 2014-04-21 06:47
Normal topic splitfile.py
by saladi » Fri, 2018-03-30 10:31
1
1,131 by rmoretti
Tue, 2018-04-10 15:34
Normal topic How can I model ligands in comparative modeling
by Morrian_Lynn » Thu, 2020-02-20 09:57
1
637 by danpf
Fri, 2020-02-21 17:05
Normal topic Docking Analysis and Metrics in RosettaLigand.
by sam_dc » Tue, 2021-04-20 03:54
1
454 by rmoretti
Tue, 2021-04-20 13:27
Normal topic ddg_monomer with -ddg::local_opt_only true, will it affect other chains that are close?
by cossio » Fri, 2014-12-26 13:11
1
1,558 by rmoretti
Tue, 2015-01-13 07:44
Normal topic Homology modelling applies alignment wrong
by bernhardcl » Thu, 2015-08-06 09:39
1
1,516 by bernhardcl
Tue, 2015-08-11 09:11
Normal topic comparative modeling of a homodimer
by banshee » Mon, 2017-01-09 18:34
1
1,695 by rmoretti
Wed, 2017-01-11 13:00
Normal topic [Solved] Resetting a pose with RigidBodyTransMover
by bjharris » Wed, 2021-01-13 14:01
1
449 by bjharris
Fri, 2021-01-22 17:34
Normal topic No interface for protein - Interface Analyzer
by aloshbau » Tue, 2013-05-21 21:00
1
2,285 by jarod
Mon, 2014-04-21 06:47
Normal topic profit program in antibody design
by tzhou » Tue, 2013-10-15 23:29
1
2,243 by rmoretti
Mon, 2014-04-21 06:48
Normal topic duplex RNA
by amir_tagh » Thu, 2021-08-05 06:34
1
288 by everyday847
Mon, 2021-08-16 10:43
Normal topic radius of gyration as constrain
by dhirajks » Sat, 2018-05-05 23:00
1
1,108 by smlewis
Mon, 2018-05-07 11:42
Normal topic Antibody Modelling
by luicui » Mon, 2017-01-23 21:30
1
1,599 by smlewis
Mon, 2017-02-06 20:46
Normal topic blast database error
by jessye » Sun, 2017-12-03 23:59
1
1,169 by smlewis
Mon, 2017-12-04 12:18
Normal topic Script for loop modeling: how to define loop sequence
by batch2k » Thu, 2014-10-30 12:58
1
1,642 by jadolfbr
Fri, 2014-10-31 08:45
Normal topic Comparative modeling using a two chained template for a one chain structure
by ahmadkhalifa » Mon, 2017-12-18 11:00
1
1,018 by rmoretti
Mon, 2018-01-15 16:14
Normal topic De novo water predictions using SPaDES
by MNP1986 » Mon, 2019-03-25 07:53
1
1,014 by matteoferla
Tue, 2020-08-04 09:30
Normal topic trouble in floppytail modelling
by ytao » Thu, 2013-06-27 13:15
1
1,918 by ytao
Mon, 2014-04-21 06:48
Normal topic rosetta's keyword list
by fred » Tue, 2014-01-21 06:03
1
2,180 by rmoretti
Mon, 2014-04-21 06:48
Normal topic SymDock with constraints
by felipet » Thu, 2015-05-14 09:01
1
2,435 by rmoretti
Mon, 2015-05-25 11:49
Normal topic Predicting the part of protein strcutrue
by ksy141 » Tue, 2018-10-16 11:47
1
875 by jadolfbr
Fri, 2018-11-09 14:28
Normal topic /database folder after running "install_dependencies.pl" size 657 GB?
by Danielsebas » Tue, 2019-09-03 03:32
1
717 by danpf
Tue, 2019-09-03 10:15
Normal topic Changing rosetta scoring to favour less hydrophobic areas
by daniloboskovic » Thu, 2020-05-21 03:03
1
571 by vmulligan
Thu, 2020-05-21 18:33
Normal topic Error with FlexPepDock
by aloshbau » Sat, 2013-08-10 11:51
1
2,052 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Snugdock+ensembledock usage
by Anouk » Mon, 2014-09-22 08:09
1
2,293 by jadolfbr
Mon, 2014-10-20 13:42
Normal topic Holes output interpretation
by lah435 » Mon, 2012-06-04 15:02
1
1,918 by smlewis
Mon, 2014-04-21 06:47
Normal topic Enzyme Design - Score File
by nwhoppe » Thu, 2016-04-07 15:11
1
1,525 by rmoretti
Fri, 2016-04-08 07:39
Normal topic Rosetta_cm Partial Threading Removing Parts of Sequence
by gszwabowski » Thu, 2019-06-20 12:30
1
966 by rmoretti
Mon, 2019-06-24 13:43
Normal topic JD2 MPI
by jrcf » Wed, 2015-10-28 14:45
1
1,651 by rmoretti
Sat, 2015-10-31 08:57
Normal topic RosettaLigand Docking
by Dinesh Kumar » Mon, 2018-01-15 20:54
1
1,498 by rmoretti
Tue, 2018-01-16 07:24
Normal topic is it necessary to always run relax before any Rosetta
by mainzer » Fri, 2019-04-12 01:35
1
1,115 by rmoretti
Wed, 2019-07-10 09:47
Normal topic How to freeze ligand during FastRelax?
by dnamkr » Thu, 2020-01-02 14:53
1
890 by aloshbau
Fri, 2020-01-10 16:48
Normal topic pepspec anchor dock
by Andre Serobian » Tue, 2020-07-28 05:51
1
579 by Andre Serobian
Tue, 2020-07-28 23:26
Normal topic Surface Docking Crash (continued)
by dkozuch » Tue, 2017-09-12 06:18
1
1,073 by rmoretti
Tue, 2017-10-10 10:08
Normal topic AbinitioRelax - Error with flags
by jmschu » Wed, 2018-11-21 17:36
1
1,356 by rmoretti
Fri, 2018-11-23 07:59
Normal topic score and relax
by Prasanth Kumar » Thu, 2013-05-02 05:09
1
2,710 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic homology membrane modeling demo in rosetta 3.5
by rlwoltz » Mon, 2013-09-09 10:26
1
2,366 by smlewis
Mon, 2014-04-21 06:48
Normal topic Syntax to extract PDB files from a silent file
by lanselibai » Fri, 2014-09-26 13:48
1
3,158 by lanselibai
Fri, 2014-09-26 14:58
Normal topic relax VS. backrub
by jiongzhang » Mon, 2012-07-02 14:52
1
1,958 by smlewis
Mon, 2014-04-21 06:47
Normal topic Blast error for rosetta antibody: No argument value given for Query file
by dngusdnr1 » Tue, 2021-06-08 17:30
1
285 by taylorjones
Wed, 2021-06-09 16:38
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:16
1
1,383 by rmoretti
Fri, 2016-06-17 10:24
Normal topic AbinitioRelax Disulfide Bonds are not being retained
by brspurri » Wed, 2011-09-28 13:55
1
3,623 by parmef
Mon, 2014-04-21 06:47
Normal topic Failed glycine check when running RosettaRemodel to build disulfide
by cheyuk » Fri, 2014-06-27 02:31
1
1,613 by everyday847
Sun, 2014-09-28 21:16
Normal topic Design a peptide linked to small molecule ligand
by shaunmk » Mon, 2015-03-02 09:05
1
1,925 by rmoretti
Wed, 2015-03-25 12:39
Normal topic relax job failed
by albumns » Sat, 2014-07-26 00:21
1
1,586 by rmoretti
Sun, 2014-07-27 10:48
Normal topic cluster.linuxgccrelease Killed error
by samuelrpita » Fri, 2015-11-20 05:56
1
1,753 by rmoretti
Tue, 2015-11-24 16:07
Normal topic loop design for Conformational bias
by dhirajks » Thu, 2019-05-09 21:22
1
924 by jadolfbr
Fri, 2019-05-10 07:53
Normal topic error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease
by xinmiaohe » Thu, 2020-01-30 22:09
1
1,089 by xinmiaohe
Fri, 2020-01-31 08:23
Normal topic Options for Enzdes RosettaScripts
by joeg » Wed, 2014-03-12 09:28
1
2,254 by rmoretti
Thu, 2014-03-13 08:04
Normal topic Segmentation fault when running Abinito Relax
by Hongtham » Mon, 2014-12-15 07:16
1
2,481 by rmoretti
Fri, 2015-01-02 11:45
Normal topic how to generate Fragments using up to 2001 structures only
by oppopomoz » Sat, 2015-07-25 00:43
1
1,501 by rmoretti
Thu, 2015-08-06 08:57
Normal topic Can I use rosetta binaries built in one linux system to another linux system?
by Danielsebas » Wed, 2019-09-18 06:49
1
773 by rmoretti
Wed, 2019-09-18 10:36
Normal topic [Solved] RosettaAntibody3 - Grafting step is failing to detect H3 from the input sequence
by brspurri » Mon, 2021-01-04 16:46
1
545 by brspurri
Mon, 2021-01-18 18:14
Normal topic modeling 4 linkers between 2 domains
by pdbb » Thu, 2013-05-16 08:23
1
1,907 by smlewis
Mon, 2014-04-21 06:47
Normal topic Full Protocol
by shekhar » Fri, 2013-10-04 01:07
1
2,472 by rmoretti
Mon, 2014-04-21 06:48
Normal topic PDB file name too long to be handled by file system
by dave » Thu, 2019-08-08 03:10
1
690 by rmoretti
Mon, 2019-08-26 12:17
Normal topic minimize_with_cst and convert_to_cst_file for ddG_monomer issues/confusion
by Kharlamov1317a » Mon, 2020-09-21 08:46
1
808 by Kharlamov1317a
Wed, 2020-10-07 08:26
Normal topic Stepwise Monte Carlo - errors with ResidueTypeSet and Disulfides
by user42 » Wed, 2021-07-21 20:34
1
285 by everyday847
Fri, 2021-07-30 13:26
Normal topic Surface accessible residue as a constraint.
by arthuc01 » Fri, 2012-03-09 23:27
1
1,743 by smlewis
Mon, 2014-04-21 06:47
Normal topic antibody protocol fails
by hamedkhakzad » Mon, 2019-08-19 07:43
1
774 by smlewis
Tue, 2019-10-22 09:45
Normal topic Rosetta_scripts error, Got some signal... It is:6
by jhm13c » Fri, 2017-04-14 14:05
1
1,426 by rmoretti
Sat, 2017-04-15 13:30
Normal topic Relax with multiple small molecules
by jharamesh » Sun, 2019-05-26 19:34
1
983 by rmoretti
Mon, 2019-06-24 15:19
Normal topic Ddg filter threshold value?
by chrisHKL » Fri, 2020-02-28 15:01
1
634 by rmoretti
Wed, 2020-03-04 09:56
Normal topic error mesages from RosettaDock
by AlanZhao » Mon, 2011-03-21 11:42
1
1,981 by smlewis
Mon, 2014-04-21 06:47
Normal topic "install_dependencies.pl" script: an optimization of HDD space during nr-pfilt data extracting and formatting stage
by Corvin » Thu, 2019-10-10 02:20
1
825 by danpf
Thu, 2019-10-10 09:55
Normal topic How to select docked models
by Sunyp_IM » Mon, 2020-06-22 00:50
1
547 by ssrb
Mon, 2020-06-22 13:12
Normal topic restrain residues in docking
by albumns » Sat, 2013-11-02 08:52
1
2,080 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic FlexPepDock in RosettaScripts keeps running
by gw » Tue, 2012-08-21 12:31
1
2,104 by smlewis
Mon, 2014-04-21 06:47
Normal topic Should I trust the score output from relax used with a protein complex?
by cossio » Thu, 2015-05-07 06:08
1
1,563 by rmoretti
Mon, 2015-05-25 12:37
Normal topic C-termini remodelling of dimeric structure removes second chain
by LeonhardJS » Wed, 2021-10-13 06:23
1
186 by LeonhardJS
Fri, 2021-11-12 01:20
Normal topic Problem in using "loopmodel" application to add missing residues
by sushreet » Wed, 2014-08-27 12:43
1
1,509 by rmoretti
Thu, 2014-08-28 09:42
Normal topic Representing Cross-linked nitrogens
by jjlee2 » Sat, 2011-11-26 18:42
1
1,923 by smlewis
Mon, 2014-04-21 06:47
Normal topic Generating non-redundat dataset for loop models
by dario.corrada » Wed, 2016-03-09 03:00
1
1,343 by smlewis
Wed, 2016-03-09 04:11
Normal topic score_jd2.linuxgccrelease documentation
by fglaser » Mon, 2011-08-01 04:08
1
3,165 by smlewis
Mon, 2014-04-21 06:47
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