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Rosetta 3 - Applications
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molfile to params polymer python errors by tsztain » Sun, 2018-12-02 15:38 |
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3,997 |
by tsztain Tue, 2018-12-11 13:41 |
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Antibody protocol: unusual antibodies, and chainbreaks by Cyril Cros » Mon, 2014-07-21 17:03 |
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5,404 |
by Cyril Cros Tue, 2014-11-25 08:21 |
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symmetrical membrane modeling by rlwoltz » Tue, 2013-10-29 03:41 |
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5,419 |
by jadolfbr Mon, 2014-04-21 06:48 |
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symmetric docking and constraints by ytao » Thu, 2013-05-02 12:08 |
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7,029 |
by attesor Wed, 2015-10-21 13:53 |
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Does linker modeling exist? by aroop » Wed, 2012-02-22 07:34 |
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4,777 |
by smlewis Mon, 2014-04-21 06:47 |
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cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else? by dantimatter » Wed, 2019-10-16 14:59 |
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2,585 |
by dantimatter Wed, 2019-10-30 09:43 |
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RosettaVIP: ERROR: seqpos <= size() by Anonymous » Thu, 2012-07-26 07:30 |
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5,898 |
by Anonymous Mon, 2014-04-21 06:47 |
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modeling an extracellular loop of a transmembrane protein by Hothman » Fri, 2016-08-12 06:16 |
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4,109 |
by rmoretti Mon, 2016-09-05 10:59 |
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How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure? by Sunyp_IM » Sun, 2020-11-08 08:07 |
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2,172 |
by Brahm Yachnin Wed, 2020-11-18 17:21 |
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rosetta protein protein docking start up by vk » Fri, 2011-06-24 09:01 |
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6,271 |
by smlewis Mon, 2014-04-21 06:47 |
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Pmut_scan with symmetry by felipet » Thu, 2015-02-05 08:53 |
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5,102 |
by felipet Wed, 2015-02-11 05:13 |
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Docking flags by AmelieH » Thu, 2014-11-13 08:46 |
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4,625 |
by AmelieH Wed, 2014-11-19 11:26 |
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PDB format for RosettaDNA by brspurri » Thu, 2013-05-30 11:21 |
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5,851 |
by brspurri Mon, 2014-04-21 06:47 |
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ddg dG_separate by gw » Wed, 2012-08-22 11:25 |
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5,350 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaAntibodyDesign: How can I run the protocol without allowing design? by brspurri » Tue, 2020-05-26 08:12 |
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2,222 |
by brspurri Wed, 2020-06-03 13:20 |
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Conformers in EnzDes by JorickF » Fri, 2015-03-06 04:41 |
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6,450 |
by rmoretti Tue, 2015-03-31 08:56 |
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How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"? by lanselibai » Mon, 2014-10-13 10:26 |
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4,864 |
by lanselibai Wed, 2014-10-15 03:52 |
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RosettaCM Tutorials by smathersc » Wed, 2017-01-11 15:59 |
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4,155 |
by rmoretti Thu, 2017-01-19 09:11 |
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relax.linuxgccrelease in multiple processors by jpfuenzalidawx » Thu, 2021-01-14 14:07 |
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1,965 |
by jadolfbr Fri, 2021-01-15 08:06 |
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Rna Denovo by helderveras » Wed, 2020-05-06 08:40 |
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2,330 |
by everyday847 Wed, 2020-05-20 08:52 |
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how to find help informations on rosetta_scripts in rosetta3.10 by xinmiaohe » Mon, 2019-08-26 14:48 |
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2,448 |
by xinmiaohe Tue, 2019-08-27 08:37 |
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[TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed by tevang » Wed, 2013-04-10 15:07 |
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4,223 |
by rmoretti Mon, 2014-04-21 06:47 |
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too many constraints result in no output pose by Yao Wu » Sun, 2012-11-18 23:45 |
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5,499 |
by smlewis Mon, 2014-04-21 06:47 |
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flexpep docking problem by michael_luntan » Mon, 2011-04-18 17:15 |
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5,046 |
by michael_luntan Mon, 2014-04-21 06:47 |
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Error during single state design by sujigeorge1979 » Sat, 2020-01-18 00:37 |
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3,743 |
by rmoretti Thu, 2020-01-30 15:42 |
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extract silent error - tag mismatch by shrutikhare » Thu, 2014-04-03 00:13 |
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6,266 |
by rmoretti Mon, 2014-04-21 10:47 |
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Error with the mpi version of simple_cycpep_predict by Florent Langenfeld » Wed, 2020-02-05 05:16 |
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2,429 |
by vmulligan Fri, 2020-04-10 02:54 |
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Rosetta RNA denovo huge memory usage (probable memory leak) by cdegut » Mon, 2017-10-30 16:41 |
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3,561 |
by cdegut Fri, 2017-11-03 05:50 |
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Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress) by Danielsebas » Mon, 2019-09-23 03:24 |
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2,480 |
by smlewis Mon, 2019-09-23 11:42 |
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ab initio protein prediction using homologs by justin » Mon, 2012-02-13 07:52 |
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5,080 |
by justin Mon, 2014-04-21 06:47 |
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Snugdock_input by luicui » Wed, 2017-01-18 16:48 |
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3,660 |
by smlewis Fri, 2017-01-20 08:14 |
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building a protein-dna homology model via cm_rosetta by y_atsmonraz » Wed, 2021-10-20 23:11 |
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1,256 |
by y_atsmonraz Tue, 2021-11-02 01:47 |
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minirosetta: weird behavior by fred » Wed, 2014-01-22 05:57 |
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4,614 |
by fred Mon, 2014-04-21 06:48 |
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Specifying resfile in rosetta scripts by johnnytam100 » Mon, 2019-03-18 02:19 |
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3,101 |
by rmoretti Fri, 2019-03-29 09:30 |
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Unable to understand fragment picking tutorial points. by Danielsebas » Thu, 2019-09-05 03:44 |
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2,347 |
by danpf Fri, 2019-09-06 11:29 |
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Relaxed proteins show higher clash score in molprobity results. by Wang Zhe » Fri, 2021-12-03 04:32 |
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1,701 |
by smlewis Wed, 2021-12-08 13:02 |
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ligand dock question by sacch » Sun, 2012-05-20 19:49 |
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3,998 |
by sacch Mon, 2014-04-21 06:47 |
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RNA structure prediction by emaghdam » Sat, 2014-02-08 01:30 |
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5,113 |
by rmoretti Mon, 2014-02-24 09:12 |
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How to specify only design surface residues and loops by RosettaScripts? by johnnytam100 » Sun, 2019-04-07 21:47 |
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2,425 |
by johnnytam100 Wed, 2019-04-10 02:48 |
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homology modelling with DNA by zadie1118 » Fri, 2012-09-28 06:35 |
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5,184 |
by rmoretti Mon, 2014-04-21 06:47 |
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fa_plane enregy term in scoring weights by ytao » Fri, 2012-11-30 20:25 |
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4,415 |
by smlewis Mon, 2014-04-21 06:47 |
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flexpep docking problem-----How to do with phosphorylation peptide? by MajorID » Thu, 2011-06-02 00:37 |
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5,646 |
by rmoretti Mon, 2014-04-21 06:47 |
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Docking Prepack protocol working or not ? by MJG » Mon, 2017-04-03 08:02 |
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3,285 |
by MJG Tue, 2017-04-04 23:59 |
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Relax with protein+complex by Prasanth Kumar » Wed, 2013-05-08 23:16 |
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5,051 |
by Prasanth Kumar Mon, 2014-04-21 06:47 |
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Error while running RosettaLigand by Ryhon Wang » Tue, 2013-07-30 02:51 |
4 |
4,621 |
by Ryhon Wang Mon, 2014-04-21 06:48 |
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Antibody modeling by Maryam_tabasinezhad » Fri, 2015-09-04 11:00 |
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4,407 |
by rmoretti Wed, 2015-09-09 12:08 |
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Prevention of the negatively charged Nitrogen protonation by coupled_moves by Corvin » Wed, 2020-11-18 02:56 |
4 |
1,744 |
by Corvin Wed, 2020-11-25 02:58 |
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fixbb with symmetry error by Prasanth Kumar » Sun, 2014-01-26 10:56 |
4 |
4,923 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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fixbb algorithm reference? by tylerborrman » Wed, 2015-09-23 10:20 |
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4,616 |
by tylerborrman Mon, 2015-09-28 09:30 |
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Loop modelling before peptide docking by wsgosal » Tue, 2013-10-01 07:24 |
4 |
4,773 |
by wsgosal Mon, 2014-04-21 06:48 |
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Options "-out:prefix" didn't work by maruhuang » Tue, 2019-09-10 05:42 |
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2,162 |
by danpf Fri, 2020-02-21 18:32 |
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Error with -patch_selectors by subha » Tue, 2017-06-06 14:40 |
4 |
3,138 |
by subha Fri, 2017-06-09 15:42 |
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Segmentation Fault during prepacking by Sunyp_IM » Fri, 2020-06-12 11:24 |
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2,403 |
by Sunyp_IM Thu, 2020-07-09 18:40 |
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"Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application by xfliu » Thu, 2012-06-21 09:07 |
4 |
4,579 |
by smlewis Mon, 2014-04-21 06:47 |
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SymDock for docking only the ligand? by ast » Mon, 2013-06-17 09:53 |
4 |
4,838 |
by rmoretti Mon, 2014-04-21 06:48 |
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rosetta3.4 fragment file problem by David Hoover » Wed, 2012-05-16 14:42 |
4 |
3,740 |
by dgront Mon, 2014-04-21 06:47 |
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fixbb and ncaa's by jarek » Thu, 2012-11-08 04:55 |
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4,289 |
by jcminerlanl Thu, 2017-12-21 10:13 |
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"OSError: [Errno 2]” in “clustering.py” by lanselibai » Sat, 2014-10-11 14:30 |
4 |
6,843 |
by lanselibai Fri, 2014-10-17 05:10 |
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Clustering issue by Loki01 » Thu, 2018-03-29 10:16 |
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2,744 |
by Loki01 Thu, 2018-04-12 08:28 |
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ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator> by DGR95 » Fri, 2021-04-16 19:26 |
4 |
1,542 |
by DGR95 Wed, 2021-04-28 16:13 |
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Changing scoring function for fixbb protocol by mdyini » Sat, 2012-07-07 18:43 |
4 |
3,718 |
by mdyini Mon, 2014-04-21 06:47 |
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Template/Input length mismatch error during RosettaCM by marinok » Mon, 2020-05-04 13:12 |
4 |
1,987 |
by marinok Mon, 2020-05-11 12:48 |
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Abinitio.relax problem on centos by krlitros87 » Wed, 2014-09-24 11:27 |
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5,240 |
by jadolfbr Tue, 2014-10-07 16:05 |
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ddg with ligands by bhaines1 » Mon, 2011-12-05 14:32 |
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4,762 |
by rmoretti Mon, 2014-04-21 06:47 |
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ReplicaDock2.0 demo fails with MPIFileBufJobDistributor: (1) [ ERROR ] by erpannec » Tue, 2022-08-09 05:42 |
4 |
787 |
by erpannec Thu, 2022-09-15 05:17 |
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Problem readin .ccp4 map file by jljbbc » Tue, 2011-05-03 11:29 |
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5,082 |
by jljbbc Mon, 2014-04-21 06:47 |
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RosettaDesign error with Option file open failed by xingqing326 » Sun, 2020-04-19 01:56 |
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2,846 |
by xingqing326 Tue, 2020-04-21 19:11 |
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extract_pdbs fails to open silent file when -auto_setup_metals enabled by attesor » Thu, 2015-01-15 03:22 |
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4,446 |
by attesor Tue, 2015-01-27 02:20 |
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Score Functions for Ligand-protein Docking by ziruiw » Sun, 2021-04-25 13:41 |
4 |
2,077 |
by ziruiw Fri, 2021-04-30 12:01 |
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How to estimate the effect of a mutation on the binding energy? by ltrabuco » Tue, 2011-02-15 08:02 |
4 |
4,836 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Rebuilding the structure from unknown residues by sushreet » Mon, 2016-06-27 09:32 |
4 |
4,425 |
by rmoretti Tue, 2016-07-12 09:35 |
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Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-' by AG88 » Thu, 2011-11-03 01:25 |
4 |
7,045 |
by weitzner Mon, 2014-04-21 06:47 |
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Multiple ligands in enzyme design application by yogeshkd » Mon, 2013-02-11 10:13 |
4 |
4,777 |
by yogeshkd Mon, 2014-04-21 06:47 |
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Single Strand DNA (ssDNA) 3D structure prediction by mkoohim » Fri, 2012-04-06 00:52 |
4 |
13,630 |
by smlewis Mon, 2014-04-21 06:47 |
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Pepspec Errors running 3.4 by rrphenix » Tue, 2013-05-28 12:08 |
4 |
3,879 |
by rmoretti Mon, 2014-04-21 06:47 |
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rosetta backrub by ladimafakher » Thu, 2018-10-04 08:01 |
4 |
2,789 |
by ladimafakher Thu, 2018-11-01 03:47 |
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Segmentation Fault by ajaniharesh » Fri, 2019-03-29 11:21 |
4 |
4,881 |
by ajaniharesh Thu, 2019-04-04 07:07 |
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Thread target sequence by duz » Thu, 2021-04-01 10:09 |
4 |
1,436 |
by duz Mon, 2021-05-03 07:50 |
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Sequence design with mixed fixbb-relax protocol by kszczepaniak » Thu, 2013-10-03 08:11 |
4 |
4,990 |
by fede Wed, 2020-09-23 11:24 |
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make_rot_lib issue by jarek » Thu, 2013-04-11 08:21 |
4 |
4,436 |
by smlewis Mon, 2014-04-21 06:47 |
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Warning messages in Interface analyzer output by Pernille » Wed, 2015-03-25 00:53 |
4 |
3,964 |
by rmoretti Tue, 2015-03-31 08:20 |
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Coverage of sequence space? by johnnytam100 » Sun, 2019-04-21 23:25 |
4 |
2,970 |
by johnnytam100 Thu, 2019-04-25 19:28 |
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select_best_unique_ligand_poses - Ligand docking by subha » Thu, 2018-04-19 10:36 |
4 |
2,728 |
by subha Fri, 2018-04-20 12:49 |
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antibody_numbering_converter cannot recognize the IMGT scheme by cryosky » Sat, 2020-02-29 23:12 |
4 |
2,271 |
by jadolfbr Sun, 2020-03-01 14:54 |
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Error when running Remodel with EnzDes constraint file to extend c-terminal by Jeffrey_Chen » Thu, 2017-01-19 06:20 |
4 |
3,720 |
by dfcoelho Tue, 2017-10-17 11:52 |
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Error while reading in silent file by rweisse » Mon, 2015-04-20 00:31 |
4 |
4,819 |
by rmoretti Thu, 2015-04-30 16:46 |
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conformational sampling of multi domain protein by dhirajks » Tue, 2017-07-04 11:20 |
4 |
3,152 |
by jrporter Wed, 2017-07-05 06:30 |
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Re: Glutamic acid protonation by bharat_46010 » Fri, 2017-02-10 03:08 |
4 |
4,033 |
by rmoretti Mon, 2017-02-20 08:09 |
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Backrub Params Files by protos_heis » Tue, 2012-09-18 06:15 |
4 |
4,627 |
by protos_heis Mon, 2014-04-21 06:47 |
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Dimer of dimers by smiruthi » Fri, 2011-04-15 10:41 |
4 |
6,411 |
by IAndre Mon, 2014-04-21 06:47 |
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Positive scores with SymmDock in helical symmetry by kxiao » Tue, 2014-02-11 07:37 |
4 |
4,118 |
by kxiao Thu, 2014-06-05 08:37 |
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mr_protocols with symmetry and ligand by jhm13c » Mon, 2017-02-27 11:59 |
4 |
3,139 |
by jhm13c Thu, 2017-03-02 12:01 |
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When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error by Martin Floor » Thu, 2020-09-17 06:01 |
4 |
1,951 |
by Martin Floor Tue, 2020-09-22 00:48 |
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ddg_monomer: what is the meaning of "total score" and "score"? by lanselibai » Tue, 2015-01-13 14:49 |
4 |
6,089 |
by rmoretti Thu, 2015-04-16 11:23 |
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RosettaAntibody3 is failing with "Error: no input sequences were specified!" by brspurri » Sun, 2020-08-16 16:16 |
4 |
2,002 |
by brspurri Tue, 2020-08-18 09:57 |
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ligand_docking_analysis by Prasanth Kumar » Thu, 2013-05-09 23:51 |
4 |
4,541 |
by rmoretti Mon, 2014-04-21 06:47 |
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comparative modelling and broker by felipet » Tue, 2013-02-05 08:33 |
4 |
3,789 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg_monomer and membrane proteins by afmo » Tue, 2014-05-20 02:37 |
4 |
5,138 |
by afmo Thu, 2014-05-22 01:19 |
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simple_cycpep_predict - Design mode - The base name "ARG" was added more than once by almeida85 » Thu, 2022-08-04 02:57 |
4 |
746 |
by almeida85 Thu, 2022-08-11 00:58 |
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side chain repacking error by malkeet.singh » Thu, 2017-12-07 04:49 |
4 |
3,280 |
by smlewis Wed, 2017-12-13 09:54 |
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