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Rosetta 3 - Applications

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Normal topic how to find help informations on rosetta_scripts in rosetta3.10
by xinmiaohe » Mon, 2019-08-26 14:48
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2,759 by xinmiaohe
Tue, 2019-08-27 08:37
Normal topic Error during single state design
by sujigeorge1979 » Sat, 2020-01-18 00:37
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4,433 by rmoretti
Thu, 2020-01-30 15:42
Normal topic Rosetta RNA denovo huge memory usage (probable memory leak)
by cdegut » Mon, 2017-10-30 16:41
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3,892 by cdegut
Fri, 2017-11-03 05:50
Normal topic Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress)
by Danielsebas » Mon, 2019-09-23 03:24
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2,823 by smlewis
Mon, 2019-09-23 11:42
Normal topic Error with the mpi version of simple_cycpep_predict
by Florent Langenfeld » Wed, 2020-02-05 05:16
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2,796 by vmulligan
Fri, 2020-04-10 02:54
Normal topic Snugdock_input
by luicui » Wed, 2017-01-18 16:48
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3,982 by smlewis
Fri, 2017-01-20 08:14
Normal topic flexpep docking problem
by michael_luntan » Mon, 2011-04-18 17:15
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5,340 by michael_luntan
Mon, 2014-04-21 06:47
Normal topic RosettaCM -weights, fragments and relax
by jsv » Tue, 2017-05-09 10:20
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4,593 by rmoretti
Thu, 2017-06-01 08:52
Normal topic Rosetta residue design for DNA binding
by deltag » Wed, 2012-12-12 11:35
5
8,832 by deltag
Mon, 2014-04-21 06:47
Normal topic Ligand Docking with Rosetta Scripts memory problem
by Swillard » Thu, 2017-08-17 14:59
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4,448 by rmoretti
Mon, 2018-11-12 14:31
Normal topic matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302
by siciliu » Fri, 2014-03-21 17:51
5
5,865 by siciliu
Thu, 2014-04-10 09:50
Normal topic Cartesian-space refinement
by sjyang7 » Wed, 2017-05-31 19:34
5
5,157 by sjyang7
Sat, 2017-06-03 06:09
Normal topic cyclization_type flag in simple_cycpep_predict
by Florent Langenfeld » Thu, 2018-01-04 09:22
5
4,161 by Florent Langenfeld
Tue, 2018-03-27 11:44
Normal topic Enzdes: increase weight of energy term for steric clashes with ligand
by eyong123 » Wed, 2015-03-25 09:12
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5,701 by rmoretti
Fri, 2015-04-24 12:02
Normal topic Using MoveMap within Relax Application?
by m_grisewood » Mon, 2012-08-13 12:21
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6,786 by m_grisewood
Mon, 2014-04-21 06:47
Normal topic RosettaLigand: How to score native pose in protein-ligand docking experiment?
by Ryhon Wang » Tue, 2015-11-10 01:30
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5,432 by Ryhon Wang
Mon, 2016-01-04 19:59
Normal topic Rosetta ScriptsFeatures Reporter issue
by David Weis » Sun, 2017-03-12 08:19
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4,343 by David Weis
Mon, 2017-03-13 10:59
Normal topic P-P docking with suitable constraint type
by Yao Wu » Tue, 2012-11-13 18:03
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6,639 by rmoretti
Mon, 2014-04-21 06:47
Normal topic domain:domain fusion
by felipet » Thu, 2017-06-15 13:13
5
4,965 by felipet
Fri, 2017-06-16 11:42
Normal topic Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans?
by ccottrell » Tue, 2020-05-05 20:30
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2,555 by jadolfbr
Wed, 2020-05-06 11:37
Normal topic rna structure prediction
by cbala » Thu, 2011-04-14 07:42
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5,500 by mkoohim
Mon, 2014-04-21 06:47
Normal topic RosettaScripts LinkResidues
by Yero » Fri, 2019-05-17 05:26
5
3,733 by Yero
Thu, 2019-07-18 01:39
Normal topic Parse error while reading in XML file in ROSETTA Scripts
by rweisse » Fri, 2014-08-29 03:24
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8,927 by a-eatemadi@razi...
Sun, 2017-08-06 03:49
Normal topic Rosetta dock irmsd
by Pernille » Sun, 2015-04-26 13:51
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6,477 by rmoretti
Mon, 2015-10-12 15:10
Normal topic Antibody protocol: unusual antibodies, and chainbreaks
by Cyril Cros » Mon, 2014-07-21 17:03
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5,829 by Cyril Cros
Tue, 2014-11-25 08:21
Normal topic snugdock(sequence position requested was greater than the number of residues in the pose)
by lei » Thu, 2023-01-12 01:40
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1,879 by lei
Fri, 2023-01-20 08:11
Normal topic docking energies - deltadeltaG calculation
by ast » Fri, 2013-07-19 07:30
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9,391 by rmoretti
Mon, 2014-04-21 06:48
Normal topic symmetrical membrane modeling
by rlwoltz » Tue, 2013-10-29 03:41
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5,701 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Does linker modeling exist?
by aroop » Wed, 2012-02-22 07:34
5
5,039 by smlewis
Mon, 2014-04-21 06:47
Normal topic extract_pdb application parse error with silent file
by staciekim » Tue, 2017-08-22 12:39
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5,210 by rmoretti
Thu, 2017-08-24 08:19
Normal topic Local docking: "manually place the two proteins facing each other" ?
by mdeklotz » Fri, 2018-07-20 10:24
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4,021 by dfcoelho
Tue, 2018-10-16 09:05
Normal topic RosettaVIP: ERROR: seqpos <= size()
by Anonymous » Thu, 2012-07-26 07:30
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6,195 by Anonymous
Mon, 2014-04-21 06:47
Normal topic ddg dG_separate
by gw » Wed, 2012-08-22 11:25
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5,732 by smlewis
Mon, 2014-04-21 06:47
Normal topic conway2016 correction on beta-nov15?
by attesor » Wed, 2017-03-15 05:26
5
4,032 by attesor
Thu, 2017-03-16 01:21
Normal topic make_rot_lib issue
by jarek » Thu, 2013-04-11 08:21
4
4,675 by smlewis
Mon, 2014-04-21 06:47
Normal topic Positive scores with SymmDock in helical symmetry
by kxiao » Tue, 2014-02-11 07:37
4
4,382 by kxiao
Thu, 2014-06-05 08:37
Normal topic Backrub Params Files
by protos_heis » Tue, 2012-09-18 06:15
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4,887 by protos_heis
Mon, 2014-04-21 06:47
Normal topic ddg_monomer and membrane proteins
by afmo » Tue, 2014-05-20 02:37
4
5,411 by afmo
Thu, 2014-05-22 01:19
Normal topic "OSError: [Errno 2]” in “clustering.py”
by lanselibai » Sat, 2014-10-11 14:30
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7,113 by lanselibai
Fri, 2014-10-17 05:10
Normal topic null mutation with ddg_monomer
by fred » Fri, 2012-05-11 07:16
4
3,952 by fred
Mon, 2014-04-21 06:47
Normal topic Template/Input length mismatch error during RosettaCM
by marinok » Mon, 2020-05-04 13:12
4
2,359 by marinok
Mon, 2020-05-11 12:48
Normal topic Clustering issue
by Loki01 » Thu, 2018-03-29 10:16
4
3,012 by Loki01
Thu, 2018-04-12 08:28
Normal topic ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator>
by DGR95 » Fri, 2021-04-16 19:26
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1,911 by DGR95
Wed, 2021-04-28 16:13
Normal topic rosetta.script segmentation fault
by felipet » Wed, 2013-10-02 10:41
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5,772 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic ligand_docking_analysis
by Prasanth Kumar » Thu, 2013-05-09 23:51
4
4,792 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Abinitio.relax problem on centos
by krlitros87 » Wed, 2014-09-24 11:27
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5,501 by jadolfbr
Tue, 2014-10-07 16:05
Normal topic ReplicaDock2.0 demo fails with MPIFileBufJobDistributor: (1) [ ERROR ]
by erpannec » Tue, 2022-08-09 05:42
4
1,225 by erpannec
Thu, 2022-09-15 05:17
Normal topic comparative modelling and broker
by felipet » Tue, 2013-02-05 08:33
4
4,040 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaDesign error with Option file open failed
by xingqing326 » Sun, 2020-04-19 01:56
4
3,411 by xingqing326
Tue, 2020-04-21 19:11
Normal topic minirosetta: weird behavior
by fred » Wed, 2014-01-22 05:57
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4,860 by fred
Mon, 2014-04-21 06:48
Normal topic ligand dock question
by sacch » Sun, 2012-05-20 19:49
4
4,242 by sacch
Mon, 2014-04-21 06:47
Normal topic ddg with ligands
by bhaines1 » Mon, 2011-12-05 14:32
4
5,150 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rebuilding the structure from unknown residues
by sushreet » Mon, 2016-06-27 09:32
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4,805 by rmoretti
Tue, 2016-07-12 09:35
Normal topic RNA structure prediction
by emaghdam » Sat, 2014-02-08 01:30
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5,418 by rmoretti
Mon, 2014-02-24 09:12
Normal topic extract_pdbs fails to open silent file when -auto_setup_metals enabled
by attesor » Thu, 2015-01-15 03:22
4
4,734 by attesor
Tue, 2015-01-27 02:20
Normal topic Score Functions for Ligand-protein Docking
by ziruiw » Sun, 2021-04-25 13:41
4
2,572 by ziruiw
Fri, 2021-04-30 12:01
Normal topic favor native residue in fixBB design
by ast » Mon, 2012-12-10 06:00
4
4,519 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta backrub
by ladimafakher » Thu, 2018-10-04 08:01
4
3,077 by ladimafakher
Thu, 2018-11-01 03:47
Normal topic Problem readin .ccp4 map file
by jljbbc » Tue, 2011-05-03 11:29
4
5,390 by jljbbc
Mon, 2014-04-21 06:47
Normal topic homology modelling with DNA
by zadie1118 » Fri, 2012-09-28 06:35
4
5,468 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to estimate the effect of a mutation on the binding energy?
by ltrabuco » Tue, 2011-02-15 08:02
4
5,129 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Segmentation Fault
by ajaniharesh » Fri, 2019-03-29 11:21
4
5,491 by ajaniharesh
Thu, 2019-04-04 07:07
Normal topic Warning messages in Interface analyzer output
by Pernille » Wed, 2015-03-25 00:53
4
4,221 by rmoretti
Tue, 2015-03-31 08:20
Normal topic Coverage of sequence space?
by johnnytam100 » Sun, 2019-04-21 23:25
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3,286 by johnnytam100
Thu, 2019-04-25 19:28
Normal topic Thread target sequence
by duz » Thu, 2021-04-01 10:09
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1,738 by duz
Mon, 2021-05-03 07:50
Normal topic Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-'
by AG88 » Thu, 2011-11-03 01:25
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7,376 by weitzner
Mon, 2014-04-21 06:47
Normal topic fixbb with symmetry error
by Prasanth Kumar » Sun, 2014-01-26 10:56
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5,198 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic Loop modelling before peptide docking
by wsgosal » Tue, 2013-10-01 07:24
4
5,024 by wsgosal
Mon, 2014-04-21 06:48
Normal topic Error when running Remodel with EnzDes constraint file to extend c-terminal
by Jeffrey_Chen » Thu, 2017-01-19 06:20
4
3,998 by dfcoelho
Tue, 2017-10-17 11:52
Normal topic fa_plane enregy term in scoring weights
by ytao » Fri, 2012-11-30 20:25
4
4,699 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error while reading in silent file
by rweisse » Mon, 2015-04-20 00:31
4
5,143 by rmoretti
Thu, 2015-04-30 16:46
Normal topic conformational sampling of multi domain protein
by dhirajks » Tue, 2017-07-04 11:20
4
3,427 by jrporter
Wed, 2017-07-05 06:30
Normal topic select_best_unique_ligand_poses - Ligand docking
by subha » Thu, 2018-04-19 10:36
4
2,997 by subha
Fri, 2018-04-20 12:49
Normal topic antibody_numbering_converter cannot recognize the IMGT scheme
by cryosky » Sat, 2020-02-29 23:12
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2,613 by jadolfbr
Sun, 2020-03-01 14:54
Normal topic Relax with protein+complex
by Prasanth Kumar » Wed, 2013-05-08 23:16
4
5,379 by Prasanth Kumar
Mon, 2014-04-21 06:47
Normal topic "Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application
by xfliu » Thu, 2012-06-21 09:07
4
4,848 by smlewis
Mon, 2014-04-21 06:47
Normal topic Re: Glutamic acid protonation
by bharat_46010 » Fri, 2017-02-10 03:08
4
4,368 by rmoretti
Mon, 2017-02-20 08:09
Normal topic Error while running RosettaLigand
by Ryhon Wang » Tue, 2013-07-30 02:51
4
4,846 by Ryhon Wang
Mon, 2014-04-21 06:48
Normal topic mr_protocols with symmetry and ligand
by jhm13c » Mon, 2017-02-27 11:59
4
3,430 by jhm13c
Thu, 2017-03-02 12:01
Normal topic When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error
by Martin Floor » Thu, 2020-09-17 06:01
4
2,327 by Martin Floor
Tue, 2020-09-22 00:48
Normal topic rosetta3.4 fragment file problem
by David Hoover » Wed, 2012-05-16 14:42
4
3,981 by dgront
Mon, 2014-04-21 06:47
Normal topic Dimer of dimers
by smiruthi » Fri, 2011-04-15 10:41
4
6,712 by IAndre
Mon, 2014-04-21 06:47
Normal topic ddg_monomer: what is the meaning of "total score" and "score"?
by lanselibai » Tue, 2015-01-13 14:49
4
6,458 by rmoretti
Thu, 2015-04-16 11:23
Normal topic RosettaAntibody3 is failing with "Error: no input sequences were specified!"
by brspurri » Sun, 2020-08-16 16:16
4
2,324 by brspurri
Tue, 2020-08-18 09:57
Normal topic simple_cycpep_predict - Design mode - The base name "ARG" was added more than once
by almeida85 » Thu, 2022-08-04 02:57
4
1,108 by almeida85
Thu, 2022-08-11 00:58
Normal topic side chain repacking error
by malkeet.singh » Thu, 2017-12-07 04:49
4
3,618 by smlewis
Wed, 2017-12-13 09:54
Normal topic Any backrub expert?
by johnnytam100 » Fri, 2019-03-01 01:58
4
3,148 by johnnytam100
Sun, 2019-03-03 23:42
Normal topic Rosetta antibody- modeling in the presense of an antigen
by agctomer » Mon, 2021-02-01 03:19
4
1,754 by nannemdp
Wed, 2021-02-03 08:52
Normal topic relax protein with multi-conformer bound ligand
by xfradera » Thu, 2023-01-12 09:10
4
2,805 by rmoretti
Mon, 2023-02-06 15:06
Normal topic ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used?
by lanselibai » Tue, 2015-02-24 02:38
4
5,954 by lanselibai
Sun, 2015-03-01 15:00
Normal topic Changing scoring function for fixbb protocol
by mdyini » Sat, 2012-07-07 18:43
4
3,965 by mdyini
Mon, 2014-04-21 06:47
Normal topic How to run simulations with non-canonical amino acids?
by Denise » Thu, 2017-06-08 07:50
4
3,750 by Denise
Thu, 2017-06-15 04:26
Normal topic RosettaCM: An internal error has occurred when "Running the Hybridize mover"
by haom » Mon, 2020-06-15 05:56
4
2,105 by haom
Tue, 2020-06-16 05:55
Normal topic fixbb and ncaa's
by jarek » Thu, 2012-11-08 04:55
4
4,573 by jcminerlanl
Thu, 2017-12-21 10:13
Normal topic SymDock for docking only the ligand?
by ast » Mon, 2013-06-17 09:53
4
5,106 by rmoretti
Mon, 2014-04-21 06:48
Normal topic How to output all iteration structures from ddg_monomer?
by cossio » Fri, 2014-12-26 13:40
4
4,525 by cossio
Mon, 2015-01-19 07:10
Normal topic Can I assume the outputs from different runs are from a same batch?
by lanselibai » Mon, 2014-11-03 06:34
4
4,414 by lanselibai
Mon, 2014-11-03 13:15
Normal topic antibody.linuxgccrelease- output models don't have the same sequence as the input fasta
by agctomer » Thu, 2021-01-21 15:35
4
1,877 by agctomer
Sun, 2021-01-31 01:06
Normal topic Structure prediction using true distance and angle constraint
by maruhuang » Wed, 2019-08-21 02:29
4
2,260 by maruhuang
Thu, 2019-09-26 18:52
Normal topic Filter for fixed-bb design using RosettaScript?
by chrisHKL » Fri, 2020-02-28 19:47
4
2,187 by vmulligan
Mon, 2020-03-02 13:40
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