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Rosetta 3 - Applications
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Using MoveMap within Relax Application? by m_grisewood » Mon, 2012-08-13 12:21 |
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7,212 |
by m_grisewood Mon, 2014-04-21 06:47 |
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Enzdes: increase weight of energy term for steric clashes with ligand by eyong123 » Wed, 2015-03-25 09:12 |
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6,169 |
by rmoretti Fri, 2015-04-24 12:02 |
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RosettaLigand: How to score native pose in protein-ligand docking experiment? by Ryhon Wang » Tue, 2015-11-10 01:30 |
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5,863 |
by Ryhon Wang Mon, 2016-01-04 19:59 |
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Rosetta ScriptsFeatures Reporter issue by David Weis » Sun, 2017-03-12 08:19 |
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4,781 |
by David Weis Mon, 2017-03-13 10:59 |
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Memory Leak: Relax Density MPI RAM overusage kills process by mmfarrugia » Sun, 2023-12-31 12:02 |
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522 |
by mmfarrugia Fri, 2024-01-12 10:35 |
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domain:domain fusion by felipet » Thu, 2017-06-15 13:13 |
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5,574 |
by felipet Fri, 2017-06-16 11:42 |
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Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans? by ccottrell » Tue, 2020-05-05 20:30 |
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3,024 |
by jadolfbr Wed, 2020-05-06 11:37 |
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RosettaScripts LinkResidues by Yero » Fri, 2019-05-17 05:26 |
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4,248 |
by Yero Thu, 2019-07-18 01:39 |
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Parse error while reading in XML file in ROSETTA Scripts by rweisse » Fri, 2014-08-29 03:24 |
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9,556 |
by a-eatemadi@razi... Sun, 2017-08-06 03:49 |
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Rosetta dock irmsd by Pernille » Sun, 2015-04-26 13:51 |
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7,054 |
by rmoretti Mon, 2015-10-12 15:10 |
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snugdock(sequence position requested was greater than the number of residues in the pose) by lei » Thu, 2023-01-12 01:40 |
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2,578 |
by lei Fri, 2023-01-20 08:11 |
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flexpep docking problem by michael_luntan » Mon, 2011-04-18 17:15 |
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5,763 |
by michael_luntan Mon, 2014-04-21 06:47 |
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Does linker modeling exist? by aroop » Wed, 2012-02-22 07:34 |
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5,385 |
by smlewis Mon, 2014-04-21 06:47 |
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extract_pdb application parse error with silent file by staciekim » Tue, 2017-08-22 12:39 |
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5,819 |
by rmoretti Thu, 2017-08-24 08:19 |
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symmetric docking and constraints by ytao » Thu, 2013-05-02 12:08 |
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7,770 |
by attesor Wed, 2015-10-21 13:53 |
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RosettaVIP: ERROR: seqpos <= size() by Anonymous » Thu, 2012-07-26 07:30 |
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6,635 |
by Anonymous Mon, 2014-04-21 06:47 |
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Local docking: "manually place the two proteins facing each other" ? by mdeklotz » Fri, 2018-07-20 10:24 |
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4,731 |
by dfcoelho Tue, 2018-10-16 09:05 |
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PDB format for RosettaDNA by brspurri » Thu, 2013-05-30 11:21 |
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6,521 |
by brspurri Mon, 2014-04-21 06:47 |
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ddg dG_separate by gw » Wed, 2012-08-22 11:25 |
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6,221 |
by smlewis Mon, 2014-04-21 06:47 |
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conway2016 correction on beta-nov15? by attesor » Wed, 2017-03-15 05:26 |
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4,521 |
by attesor Thu, 2017-03-16 01:21 |
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How to concatenate the 3-mer and 9-mer files for RosettaCM? by lanselibai » Fri, 2020-05-08 05:38 |
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3,367 |
by danpf Tue, 2020-05-12 10:58 |
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Scoring functions: talaris2013 incompatible versions by Smbat » Tue, 2020-10-13 06:18 |
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3,193 |
by Astghik Thu, 2020-10-15 00:48 |
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rna structure prediction by cbala » Thu, 2011-04-14 07:42 |
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5,952 |
by mkoohim Mon, 2014-04-21 06:47 |
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how to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:40 |
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5,226 |
by xinmiaohe Fri, 2019-10-04 08:54 |
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Is there a way to restrict memory usage of ddg_monomer? by cossio » Fri, 2015-01-30 14:35 |
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5,286 |
by rmoretti Mon, 2015-02-09 12:04 |
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Steric clashes in RNA minimization by brianmlee » Tue, 2014-11-18 18:29 |
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6,194 |
by brianmlee Mon, 2014-11-24 19:40 |
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How to minimize the decoys obtained from backrub? by Vedasheersh » Wed, 2017-06-14 10:26 |
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4,324 |
by SenyorDrew Fri, 2017-06-30 09:47 |
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too many constraints result in no output pose by Yao Wu » Sun, 2012-11-18 23:45 |
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6,189 |
by smlewis Mon, 2014-04-21 06:47 |
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rosetta app by MA » Wed, 2017-07-05 06:52 |
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4,124 |
by smlewis Tue, 2017-07-11 07:53 |
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[TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed by tevang » Wed, 2013-04-10 15:07 |
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4,924 |
by rmoretti Mon, 2014-04-21 06:47 |
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trRosetta protocol Segmentation Fault by nc-ring » Wed, 2021-04-28 11:57 |
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2,789 |
by nc-ring Tue, 2021-05-04 12:26 |
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Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking by Corvin » Wed, 2019-06-19 08:40 |
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4,200 |
by rmoretti Tue, 2019-07-09 10:13 |
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ab initio protein prediction using homologs by justin » Mon, 2012-02-13 07:52 |
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5,825 |
by justin Mon, 2014-04-21 06:47 |
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AbinitioRelax with native fragments by ks » Mon, 2016-09-05 03:03 |
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5,434 |
by ks Mon, 2016-09-12 03:14 |
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problem creating lips4 file using run_lips.pl by adva » Sun, 2015-02-15 06:22 |
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7,644 |
by linucks Mon, 2016-06-20 12:02 |
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RosettaCM Biological Assembly by jrcf » Mon, 2015-10-26 11:01 |
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7,431 |
by rmoretti Tue, 2015-11-24 15:30 |
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RosettaDesign error with Option file open failed by xingqing326 » Sun, 2020-04-19 01:56 |
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4,035 |
by xingqing326 Tue, 2020-04-21 19:11 |
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Rebuilding the structure from unknown residues by sushreet » Mon, 2016-06-27 09:32 |
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5,308 |
by rmoretti Tue, 2016-07-12 09:35 |
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ligand dock question by sacch » Sun, 2012-05-20 19:49 |
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4,526 |
by sacch Mon, 2014-04-21 06:47 |
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extract_pdbs fails to open silent file when -auto_setup_metals enabled by attesor » Thu, 2015-01-15 03:22 |
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5,087 |
by attesor Tue, 2015-01-27 02:20 |
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Score Functions for Ligand-protein Docking by ziruiw » Sun, 2021-04-25 13:41 |
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3,276 |
by ziruiw Fri, 2021-04-30 12:01 |
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fa_plane enregy term in scoring weights by ytao » Fri, 2012-11-30 20:25 |
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5,050 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking to TM protein plus lipid bilayer by renedominik » Tue, 2019-03-12 06:58 |
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3,657 |
by elpipasp Thu, 2023-10-19 04:37 |
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rosetta backrub by ladimafakher » Thu, 2018-10-04 08:01 |
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3,505 |
by ladimafakher Thu, 2018-11-01 03:47 |
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homology modelling with DNA by zadie1118 » Fri, 2012-09-28 06:35 |
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5,813 |
by rmoretti Mon, 2014-04-21 06:47 |
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Relax with protein+complex by Prasanth Kumar » Wed, 2013-05-08 23:16 |
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5,835 |
by Prasanth Kumar Mon, 2014-04-21 06:47 |
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Segmentation Fault by ajaniharesh » Fri, 2019-03-29 11:21 |
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6,244 |
by ajaniharesh Thu, 2019-04-04 07:07 |
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Warning messages in Interface analyzer output by Pernille » Wed, 2015-03-25 00:53 |
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4,632 |
by rmoretti Tue, 2015-03-31 08:20 |
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Coverage of sequence space? by johnnytam100 » Sun, 2019-04-21 23:25 |
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3,680 |
by johnnytam100 Thu, 2019-04-25 19:28 |
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Thread target sequence by duz » Thu, 2021-04-01 10:09 |
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2,256 |
by duz Mon, 2021-05-03 07:50 |
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Sequence design with mixed fixbb-relax protocol by kszczepaniak » Thu, 2013-10-03 08:11 |
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5,691 |
by fede Wed, 2020-09-23 11:24 |
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Error while running RosettaLigand by Ryhon Wang » Tue, 2013-07-30 02:51 |
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5,160 |
by Ryhon Wang Mon, 2014-04-21 06:48 |
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Error when running Remodel with EnzDes constraint file to extend c-terminal by Jeffrey_Chen » Thu, 2017-01-19 06:20 |
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4,410 |
by dfcoelho Tue, 2017-10-17 11:52 |
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Error while reading in silent file by rweisse » Mon, 2015-04-20 00:31 |
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5,582 |
by rmoretti Thu, 2015-04-30 16:46 |
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conformational sampling of multi domain protein by dhirajks » Tue, 2017-07-04 11:20 |
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3,828 |
by jrporter Wed, 2017-07-05 06:30 |
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select_best_unique_ligand_poses - Ligand docking by subha » Thu, 2018-04-19 10:36 |
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3,369 |
by subha Fri, 2018-04-20 12:49 |
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antibody_numbering_converter cannot recognize the IMGT scheme by cryosky » Sat, 2020-02-29 23:12 |
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3,065 |
by jadolfbr Sun, 2020-03-01 14:54 |
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Re: Glutamic acid protonation by bharat_46010 » Fri, 2017-02-10 03:08 |
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4,850 |
by rmoretti Mon, 2017-02-20 08:09 |
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ddg with ligands by bhaines1 » Mon, 2011-12-05 14:32 |
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5,623 |
by rmoretti Mon, 2014-04-21 06:47 |
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"Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application by xfliu » Thu, 2012-06-21 09:07 |
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5,182 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem readin .ccp4 map file by jljbbc » Tue, 2011-05-03 11:29 |
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5,820 |
by jljbbc Mon, 2014-04-21 06:47 |
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Positive scores with SymmDock in helical symmetry by kxiao » Tue, 2014-02-11 07:37 |
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4,723 |
by kxiao Thu, 2014-06-05 08:37 |
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mr_protocols with symmetry and ligand by jhm13c » Mon, 2017-02-27 11:59 |
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3,855 |
by jhm13c Thu, 2017-03-02 12:01 |
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When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error by Martin Floor » Thu, 2020-09-17 06:01 |
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2,836 |
by Martin Floor Tue, 2020-09-22 00:48 |
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How to estimate the effect of a mutation on the binding energy? by ltrabuco » Tue, 2011-02-15 08:02 |
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5,531 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-' by AG88 » Thu, 2011-11-03 01:25 |
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7,757 |
by weitzner Mon, 2014-04-21 06:47 |
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SymDock for docking only the ligand? by ast » Mon, 2013-06-17 09:53 |
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5,481 |
by rmoretti Mon, 2014-04-21 06:48 |
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rosetta3.4 fragment file problem by David Hoover » Wed, 2012-05-16 14:42 |
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4,261 |
by dgront Mon, 2014-04-21 06:47 |
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ddg_monomer: what is the meaning of "total score" and "score"? by lanselibai » Tue, 2015-01-13 14:49 |
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6,892 |
by rmoretti Thu, 2015-04-16 11:23 |
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RosettaAntibody3 is failing with "Error: no input sequences were specified!" by brspurri » Sun, 2020-08-16 16:16 |
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2,779 |
by brspurri Tue, 2020-08-18 09:57 |
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fixbb and ncaa's by jarek » Thu, 2012-11-08 04:55 |
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4,979 |
by jcminerlanl Thu, 2017-12-21 10:13 |
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side chain repacking error by malkeet.singh » Thu, 2017-12-07 04:49 |
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4,137 |
by smlewis Wed, 2017-12-13 09:54 |
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Any backrub expert? by johnnytam100 » Fri, 2019-03-01 01:58 |
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3,608 |
by johnnytam100 Sun, 2019-03-03 23:42 |
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Rosetta antibody- modeling in the presense of an antigen by agctomer » Mon, 2021-02-01 03:19 |
4 |
2,159 |
by nannemdp Wed, 2021-02-03 08:52 |
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relax protein with multi-conformer bound ligand by xfradera » Thu, 2023-01-12 09:10 |
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3,421 |
by rmoretti Mon, 2023-02-06 15:06 |
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ddg_monomer and membrane proteins by afmo » Tue, 2014-05-20 02:37 |
4 |
5,797 |
by afmo Thu, 2014-05-22 01:19 |
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simple_cycpep_predict - Design mode - The base name "ARG" was added more than once by almeida85 » Thu, 2022-08-04 02:57 |
4 |
1,742 |
by almeida85 Thu, 2022-08-11 00:58 |
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Changing scoring function for fixbb protocol by mdyini » Sat, 2012-07-07 18:43 |
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4,275 |
by mdyini Mon, 2014-04-21 06:47 |
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ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used? by lanselibai » Tue, 2015-02-24 02:38 |
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6,395 |
by lanselibai Sun, 2015-03-01 15:00 |
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How to run simulations with non-canonical amino acids? by Denise » Thu, 2017-06-08 07:50 |
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4,192 |
by Denise Thu, 2017-06-15 04:26 |
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rosetta.script segmentation fault by felipet » Wed, 2013-10-02 10:41 |
4 |
6,103 |
by jadolfbr Mon, 2014-04-21 06:48 |
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How to output all iteration structures from ddg_monomer? by cossio » Fri, 2014-12-26 13:40 |
4 |
4,944 |
by cossio Mon, 2015-01-19 07:10 |
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RosettaCM: An internal error has occurred when "Running the Hybridize mover" by haom » Mon, 2020-06-15 05:56 |
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2,498 |
by haom Tue, 2020-06-16 05:55 |
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Can I assume the outputs from different runs are from a same batch? by lanselibai » Mon, 2014-11-03 06:34 |
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4,788 |
by lanselibai Mon, 2014-11-03 13:15 |
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antibody.linuxgccrelease- output models don't have the same sequence as the input fasta by agctomer » Thu, 2021-01-21 15:35 |
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2,331 |
by agctomer Sun, 2021-01-31 01:06 |
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Structure prediction using true distance and angle constraint by maruhuang » Wed, 2019-08-21 02:29 |
4 |
2,620 |
by maruhuang Thu, 2019-09-26 18:52 |
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Filter for fixed-bb design using RosettaScript? by chrisHKL » Fri, 2020-02-28 19:47 |
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2,574 |
by vmulligan Mon, 2020-03-02 13:40 |
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Dimer of dimers by smiruthi » Fri, 2011-04-15 10:41 |
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7,138 |
by IAndre Mon, 2014-04-21 06:47 |
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minirosetta: weird behavior by fred » Wed, 2014-01-22 05:57 |
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5,179 |
by fred Mon, 2014-04-21 06:48 |
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Specifying resfile in rosetta scripts by johnnytam100 » Mon, 2019-03-18 02:19 |
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3,982 |
by rmoretti Fri, 2019-03-29 09:30 |
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building a protein-dna homology model via cm_rosetta by y_atsmonraz » Wed, 2021-10-20 23:11 |
4 |
2,134 |
by y_atsmonraz Tue, 2021-11-02 01:47 |
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RNA structure prediction by emaghdam » Sat, 2014-02-08 01:30 |
4 |
5,876 |
by rmoretti Mon, 2014-02-24 09:12 |
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How to specify only design surface residues and loops by RosettaScripts? by johnnytam100 » Sun, 2019-04-07 21:47 |
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3,202 |
by johnnytam100 Wed, 2019-04-10 02:48 |
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Unable to understand fragment picking tutorial points. by Danielsebas » Thu, 2019-09-05 03:44 |
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3,090 |
by danpf Fri, 2019-09-06 11:29 |
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Relaxed proteins show higher clash score in molprobity results. by Wang Zhe » Fri, 2021-12-03 04:32 |
4 |
3,140 |
by smlewis Wed, 2021-12-08 13:02 |
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Pepspec Errors running 3.4 by rrphenix » Tue, 2013-05-28 12:08 |
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4,452 |
by rmoretti Mon, 2014-04-21 06:47 |
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Multiple ligands in enzyme design application by yogeshkd » Mon, 2013-02-11 10:13 |
4 |
5,383 |
by yogeshkd Mon, 2014-04-21 06:47 |
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Single Strand DNA (ssDNA) 3D structure prediction by mkoohim » Fri, 2012-04-06 00:52 |
4 |
14,655 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking Prepack protocol working or not ? by MJG » Mon, 2017-04-03 08:02 |
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4,059 |
by MJG Tue, 2017-04-04 23:59 |
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Antibody modeling by Maryam_tabasinezhad » Fri, 2015-09-04 11:00 |
4 |
5,046 |
by rmoretti Wed, 2015-09-09 12:08 |
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