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Rosetta 3 - Applications
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Ddg filter threshold value? by chrisHKL » Fri, 2020-02-28 15:01 |
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954 |
by rmoretti Wed, 2020-03-04 09:56 |
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DDG monomer and backrub motions by yperez » Thu, 2012-06-21 08:10 |
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3,023 |
by yperez Mon, 2014-04-21 06:47 |
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ddG Monomer Low Res Protocol Convergence by harshkhare » Thu, 2012-03-01 00:45 |
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3,476 |
by harshkhare Mon, 2014-04-21 06:47 |
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ddg monomer vs pmut scan by dave » Tue, 2014-03-04 10:18 |
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3,968 |
by smlewis Fri, 2014-03-07 13:02 |
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ddg with ligands by bhaines1 » Mon, 2011-12-05 14:32 |
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4,758 |
by rmoretti Mon, 2014-04-21 06:47 |
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ddG_monomer by cott1117 » Thu, 2014-06-12 09:53 |
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4,388 |
by rmoretti Wed, 2014-07-02 16:55 |
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DDG_monomer ΔΔG question by asbelx » Fri, 2018-04-20 03:31 |
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968 |
by asbelx Fri, 2018-04-20 03:33 |
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ddg_monomer "ERROR: seqpos >= 1" by cossio » Fri, 2015-10-02 12:20 |
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1,976 |
by rmoretti Fri, 2015-10-02 12:30 |
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ddg_monomer and membrane proteins by afmo » Tue, 2014-05-20 02:37 |
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5,134 |
by afmo Thu, 2014-05-22 01:19 |
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DDG_monomer application by shadrinams » Mon, 2018-02-12 12:14 |
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2,632 |
by shadrinams Wed, 2018-03-14 07:46 |
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ddg_monomer conformational search... by yperez » Wed, 2012-05-09 11:10 |
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4,384 |
by yperez Mon, 2014-04-21 06:47 |
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ddg_monomer consumes massive RAM by cossio » Fri, 2018-03-09 17:02 |
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5,135 |
by rmoretti Mon, 2018-03-19 12:12 |
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ddg_monomer mutations list: How to specify chain ID? by cossio » Tue, 2014-12-09 14:26 |
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14,114 |
by rmoretti Thu, 2016-04-28 16:43 |
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ddg_monomer problem by deltag » Wed, 2012-04-04 07:53 |
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10,890 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg_monomer with -ddg::local_opt_only true, will it affect other chains that are close? by cossio » Fri, 2014-12-26 13:11 |
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1,840 |
by rmoretti Tue, 2015-01-13 07:44 |
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ddg_monomer.mpi by gw » Thu, 2011-10-27 16:45 |
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3,699 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used? by lanselibai » Tue, 2015-02-24 02:38 |
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5,623 |
by lanselibai Sun, 2015-03-01 15:00 |
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ddg_monomer: if MPI executable is reproducible and efficient? by lanselibai » Sun, 2015-01-11 09:48 |
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1,449 |
by lanselibai Sun, 2015-01-11 10:50 |
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Ddg_monomer: implementing disulfides by kabol » Wed, 2016-11-30 02:39 |
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1,995 |
by rmoretti Wed, 2016-11-30 07:46 |
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ddg_monomer: what is the meaning of "total score" and "score"? by lanselibai » Tue, 2015-01-13 14:49 |
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6,084 |
by rmoretti Thu, 2015-04-16 11:23 |
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ddg_monomer: what is the theoretical solution condition for the scoring? by lanselibai » Sat, 2016-04-30 03:26 |
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3,351 |
by smlewis Mon, 2016-05-02 08:20 |
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De novo model-building guided by exprimental density data by dee2711453 » Thu, 2016-03-10 17:28 |
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3,132 |
by dee2711453 Fri, 2016-03-11 21:32 |
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De novo structure building with medium resolution map by BuddySphinx » Tue, 2019-07-02 09:07 |
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1,636 |
by BuddySphinx Tue, 2019-07-02 12:03 |
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De novo water predictions using SPaDES by MNP1986 » Mon, 2019-03-25 07:53 |
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1,443 |
by matteoferla Tue, 2020-08-04 09:30 |
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debug rosetta_scripts FunFolDes run by tatsiana.bylund » Sun, 2019-08-18 23:17 |
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1,171 |
by neelamraju.srid... Wed, 2020-11-18 05:47 |
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deltaG calculations by Prasanth Kumar » Wed, 2013-05-15 07:06 |
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5,787 |
by rmoretti Mon, 2014-04-21 06:47 |
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demo of molecular replacement with rosetta (mr_rosetta) by wenchangyu2008 » Sun, 2011-03-20 05:23 |
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10,084 |
by astrofunk12 Mon, 2014-04-21 06:47 |
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denovo modelling on a virus-coat protein dimer by aseem121 » Wed, 2019-10-16 06:55 |
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1,148 |
by danpf Wed, 2019-10-16 13:03 |
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denovo_density don't output a pdb file by ylwang » Sun, 2018-11-18 17:51 |
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841 |
by ylwang Sun, 2018-11-18 17:51 |
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density scoring by Tianyang89 » Sat, 2020-08-29 04:54 |
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1,256 |
by danpf Sun, 2020-08-30 22:23 |
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Design a peptide linked to small molecule ligand by shaunmk » Mon, 2015-03-02 09:05 |
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2,245 |
by rmoretti Wed, 2015-03-25 12:39 |
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Design of multimeric protein by ldlamini » Mon, 2021-01-11 07:23 |
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613 |
by ldlamini Mon, 2021-01-11 07:23 |
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Design with limited number of aminoacids at given position by sdh_h » Sun, 2016-12-04 03:44 |
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1,632 |
by smlewis Thu, 2016-12-08 15:50 |
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Destination of score.fsc file by anirbanzz » Wed, 2011-04-20 23:30 |
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2,580 |
by smlewis Mon, 2014-04-21 06:47 |
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Difference between movemap and -pivot_residues by aloshbau » Wed, 2016-02-24 13:21 |
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1,885 |
by rmoretti Wed, 2016-02-24 14:39 |
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Difference between relax and mimimize_with_cst by basvandenberg » Thu, 2012-02-09 00:16 |
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2,535 |
by rmoretti Mon, 2014-04-21 06:47 |
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Different scoring applications (score vs score_aln vs score_jd2, etc.)? by cossio » Fri, 2014-12-26 07:19 |
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3,942 |
by Patrícia Antunes Fri, 2023-01-20 11:55 |
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different value of score from rna_denovo and rna_score? by yikanzhang » Wed, 2021-02-03 07:17 |
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771 |
by CameronJA Tue, 2021-06-15 20:02 |
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dihedral_between_bonded_children: atoms are not both my children! by pdbb » Fri, 2013-04-05 06:40 |
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2,932 |
by smlewis Mon, 2014-04-21 06:47 |
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Dimer of dimers by smiruthi » Fri, 2011-04-15 10:41 |
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6,407 |
by IAndre Mon, 2014-04-21 06:47 |
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Dimeric interface redesign by kjs1728 » Mon, 2022-05-02 21:57 |
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490 |
by kjs1728 Mon, 2022-05-02 21:57 |
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Discrepancy between the total pose energy and sum of per residue energies by vijayan » Tue, 2013-07-02 07:24 |
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4,032 |
by rmoretti Mon, 2014-04-21 06:48 |
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Distinctions between InterfaceAnalyzer and RosettaScript by achambe » Wed, 2015-06-17 10:14 |
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7,249 |
by rmoretti Wed, 2015-09-02 12:43 |
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Disulfide Bonds in Loop Modeling by code_Monkey » Mon, 2021-05-03 08:27 |
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1,042 |
by code_Monkey Thu, 2021-05-06 07:14 |
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Disulfide prediction from primary sequence by zcrook » Wed, 2014-11-12 14:44 |
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4,505 |
by zcrook Tue, 2014-11-25 10:27 |
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Disulfidize- "Extra content at the end of the document" by ldlamini » Tue, 2022-05-17 02:37 |
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654 |
by rmoretti Tue, 2022-05-17 07:29 |
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DNA Interface design by zadie1118 » Wed, 2011-06-22 07:05 |
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1,981 |
by zadie1118 Mon, 2014-04-21 06:47 |
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DNA-protein docking by ksteczk » Sat, 2020-04-11 11:23 |
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1,046 |
by ksteczk Sat, 2020-04-11 11:23 |
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do mpi apps share memory? by fred » Thu, 2014-01-23 11:49 |
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3,007 |
by fred Mon, 2014-04-21 06:48 |
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Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively? by johnnytam100 » Fri, 2019-08-23 21:10 |
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1,049 |
by rmoretti Mon, 2019-08-26 12:03 |
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Dock two domains using topology broker by sn » Thu, 2017-10-05 17:07 |
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930 |
by sn Thu, 2017-10-05 17:07 |
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Docking Analysis and Metrics in RosettaLigand. by sam_dc » Tue, 2021-04-20 03:54 |
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1,215 |
by rmoretti Tue, 2021-04-20 13:27 |
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docking energies - deltadeltaG calculation by ast » Fri, 2013-07-19 07:30 |
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9,027 |
by rmoretti Mon, 2014-04-21 06:48 |
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Docking flags by AmelieH » Thu, 2014-11-13 08:46 |
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4,624 |
by AmelieH Wed, 2014-11-19 11:26 |
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Docking HeparinSulfate to proteins using GlycanDock by GebauerJ » Tue, 2022-08-16 07:44 |
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418 |
by GebauerJ Tue, 2022-08-16 07:44 |
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docking in rosetta 3.3 by Ammu » Thu, 2012-03-15 12:03 |
6 |
5,352 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking membrane ions and water by jrcf » Tue, 2017-02-07 15:47 |
3 |
2,756 |
by smlewis Wed, 2017-02-15 07:43 |
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Docking of multichain oligomers by sdh_h » Wed, 2020-03-25 12:43 |
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799 |
by sdh_h Wed, 2020-03-25 12:43 |
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Docking on mpi. by Pernille » Mon, 2014-07-28 08:40 |
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2,656 |
by rmoretti Mon, 2014-08-04 14:51 |
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docking parse error by dave » Tue, 2018-12-04 08:41 |
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1,594 |
by rmoretti Tue, 2018-12-04 08:55 |
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Docking Prepack protocol working or not ? by MJG » Mon, 2017-04-03 08:02 |
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3,279 |
by MJG Tue, 2017-04-04 23:59 |
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Docking prepack vs. relax by David Weis » Tue, 2017-02-21 05:37 |
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1,738 |
by smlewis Tue, 2017-02-21 07:58 |
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Docking protein complexes when constrained by oligomer symmetry by msk » Tue, 2014-06-03 11:09 |
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1,315 |
by msk Tue, 2014-06-03 11:09 |
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Docking seems to not parse the -nstruct flag by rosend » Tue, 2015-11-17 12:01 |
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3,343 |
by rosend Tue, 2015-11-17 12:12 |
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Docking structures with ligands in cryo-EM maps by galushin » Wed, 2012-07-11 12:40 |
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4,269 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Docking the border segments of coiled coils in parallel orientation by Corvin » Mon, 2019-12-02 02:00 |
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773 |
by Corvin Mon, 2019-12-02 02:00 |
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Docking to TM protein plus lipid bilayer by renedominik » Tue, 2019-03-12 06:58 |
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2,564 |
by renedominik Tue, 2020-02-18 01:36 |
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docking with capping groups by xavierfradera » Sun, 2018-11-04 16:17 |
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1,256 |
by maral.adeli-kou... Wed, 2020-01-22 12:41 |
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Docking with constraint by Hongtham » Sat, 2014-12-27 09:56 |
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2,457 |
by rmoretti Fri, 2015-01-02 09:43 |
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docking with constraints by talavera » Tue, 2013-05-07 01:50 |
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3,748 |
by rmoretti Mon, 2014-04-21 06:47 |
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Docking with constraints by ytao » Tue, 2013-04-02 09:45 |
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7,270 |
by smlewis Mon, 2014-04-21 06:47 |
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docking with constraints and flexible bb by mintseris » Mon, 2015-06-22 09:07 |
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2,728 |
by mintseris Wed, 2015-06-24 22:04 |
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Docking with loop rebuilding by kxiao » Sun, 2015-06-28 19:37 |
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1,916 |
by rmoretti Fri, 2015-07-03 14:41 |
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Docking-I_sc values do not correlate by jlawrie » Wed, 2020-08-12 08:08 |
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1,312 |
by jlawrie Wed, 2020-08-12 08:57 |
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Docking-RMS value nan by jlawrie » Wed, 2020-08-12 07:03 |
2 |
1,256 |
by jlawrie Wed, 2020-08-12 07:27 |
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DockingProtocol by Soler » Fri, 2022-02-11 00:12 |
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1,167 |
by gezmi Tue, 2022-02-15 21:47 |
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Does antibody_numbering_converter support camelid antibody? by mxp » Tue, 2020-07-07 01:21 |
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648 |
by mxp Tue, 2020-07-07 01:21 |
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Does it make sense if I do backrub after sequence design? by johnnytam100 » Thu, 2019-08-15 05:15 |
3 |
1,815 |
by johnnytam100 Fri, 2019-08-16 00:20 |
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Does linker modeling exist? by aroop » Wed, 2012-02-22 07:34 |
5 |
4,767 |
by smlewis Mon, 2014-04-21 06:47 |
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Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease? by lanselibai » Thu, 2015-01-08 03:23 |
3 |
3,185 |
by lanselibai Tue, 2015-01-13 14:25 |
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does the loop kinetic support MPI now? by albumns » Fri, 2012-10-26 06:31 |
2 |
2,218 |
by smlewis Mon, 2014-04-21 06:47 |
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Domain insertion with Non-CAA by mwfranklin » Mon, 2017-01-16 12:30 |
0 |
1,519 |
by mwfranklin Mon, 2017-01-16 12:30 |
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domain:domain fusion by felipet » Thu, 2017-06-15 13:13 |
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4,528 |
by felipet Fri, 2017-06-16 11:42 |
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Don't know how to extract scores from a RNA de novo silent file. by Basantab » Wed, 2011-11-23 17:27 |
10 |
8,886 |
by smlewis Mon, 2014-04-21 06:47 |
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dssp by MA » Thu, 2017-10-05 09:34 |
1 |
1,514 |
by rmoretti Tue, 2017-10-10 09:54 |
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duplex RNA by amir_tagh » Thu, 2021-08-05 06:34 |
1 |
722 |
by everyday847 Mon, 2021-08-16 10:43 |
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Element 'trRosettaProtocol': This element is not expected. by csaylan » Tue, 2021-04-20 14:21 |
2 |
996 |
by csaylan Tue, 2021-04-20 16:13 |
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Energy function and iteration script files by michelleqyh » Fri, 2019-09-27 09:06 |
1 |
1,007 |
by smlewis Fri, 2019-09-27 11:54 |
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Ensemble docking causes segmentation fault 11 by David Weis » Mon, 2017-03-06 14:30 |
2 |
2,483 |
by David Weis Mon, 2017-03-13 06:40 |
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Ensemble Docking in Rosetta3.5? by protos_heis » Fri, 2015-05-22 06:42 |
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7,541 |
by protos_heis Mon, 2015-06-08 07:00 |
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Enzdes constraint file not defined correctly by eyong123 » Fri, 2015-03-27 07:16 |
3 |
3,336 |
by rmoretti Thu, 2015-04-16 10:38 |
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Enzdes score file discrepancy between generated pdb and scores.out by eyong123 » Wed, 2015-03-25 08:52 |
6 |
6,370 |
by eyong123 Mon, 2015-06-29 04:44 |
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Enzdes scorefile lost, can I recreate it by eyong123 » Wed, 2015-04-15 05:55 |
2 |
2,347 |
by eyong123 Wed, 2015-04-22 11:33 |
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Enzdes: increase weight of energy term for steric clashes with ligand by eyong123 » Wed, 2015-03-25 09:12 |
5 |
5,370 |
by rmoretti Fri, 2015-04-24 12:02 |
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Enzyme Design - Score File by nwhoppe » Thu, 2016-04-07 15:11 |
1 |
1,856 |
by rmoretti Fri, 2016-04-08 07:39 |
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enzyme design and output_matchres_only by petrikigor » Wed, 2012-10-24 18:45 |
6 |
4,581 |
by petrikigor Mon, 2014-04-21 06:47 |
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Enzyme Design FlexBB Protocol Bug: DNA/RNA handling by kettner » Fri, 2019-06-14 14:16 |
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1,577 |
by rmoretti Mon, 2019-06-24 13:46 |
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Enzyme Design Not Editing Structure by liuwenxi » Wed, 2022-05-18 10:12 |
0 |
489 |
by liuwenxi Wed, 2022-05-18 10:12 |
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Enzyme design output silent file and score file by deltag » Fri, 2012-09-28 13:07 |
1 |
2,166 |
by rmoretti Mon, 2014-04-21 06:47 |
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Enzyme Design with additional covalent backbone bonds by mwfranklin » Wed, 2016-08-03 10:23 |
1 |
2,164 |
by rmoretti Mon, 2016-09-05 11:29 |
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