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Rosetta 3 - Applications

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Normal topic ligand_docking_analysis
by Prasanth Kumar » Thu, 2013-05-09 23:51
4
3,986 by rmoretti
Mon, 2014-04-21 06:47
Normal topic RosettaAntibody
by mpendleton » Mon, 2011-04-04 10:27
3
3,977 by jianqing
Mon, 2014-04-21 06:47
Normal topic Backrub Params Files
by protos_heis » Tue, 2012-09-18 06:15
4
3,976 by protos_heis
Mon, 2014-04-21 06:47
Normal topic Disulfide prediction from primary sequence
by zcrook » Wed, 2014-11-12 14:44
2
3,962 by zcrook
Tue, 2014-11-25 10:27
Normal topic SEWING and motif file generation
by rbjacob » Thu, 2018-07-12 07:28
10
3,956 by zhangying1990
Tue, 2019-06-04 18:04
Normal topic ddg with ligands
by bhaines1 » Mon, 2011-12-05 14:32
4
3,955 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Abrelax - Dunbrack02.lib.bin missing
by omirus » Sun, 2011-09-18 06:30
3
3,925 by smlewis
Mon, 2014-04-21 06:47
Normal topic fixbb algorithm reference?
by tylerborrman » Wed, 2015-09-23 10:20
4
3,914 by tylerborrman
Mon, 2015-09-28 09:30
Normal topic Segmentation fault (core dumped) in rosetta_scripts.default.linuxgccrelease after blueprint file reading
by Corvin » Tue, 2020-06-30 00:36
12
3,909 by Corvin
Tue, 2020-11-10 01:22
Normal topic Homodimer interface design
by petrikigor » Fri, 2012-11-16 10:57
3
3,908 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Line search failed even after resetting Hessian
by Loki01 » Wed, 2017-12-13 16:52
6
3,894 by Loki01
Thu, 2018-02-15 13:54
Normal topic Ligand atom RMSD calculation
by lkrathn » Wed, 2013-08-14 21:25
2
3,891 by lkrathn
Mon, 2014-04-21 06:48
Normal topic Rosetta DNA - Protein-DNA scoring function and binding energy
by tanoramb » Tue, 2012-05-08 14:00
1
3,886 by smlewis
Mon, 2014-04-21 06:47
Normal topic assymetric dymer modelling with comparative and ab initio
by marcia » Mon, 2013-10-14 08:33
3
3,886 by rmoretti
Mon, 2014-04-21 06:48
Normal topic "Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application
by xfliu » Thu, 2012-06-21 09:07
4
3,881 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ligand docking and protein design of an internal pocket in a protein with a cofactor
by oerbilgin » Mon, 2011-06-20 13:55
2
3,877 by frichter
Mon, 2014-04-21 06:47
Normal topic enzyme design and output_matchres_only
by petrikigor » Wed, 2012-10-24 18:45
6
3,875 by petrikigor
Mon, 2014-04-21 06:47
Normal topic Docking flags
by AmelieH » Thu, 2014-11-13 08:46
5
3,871 by AmelieH
Wed, 2014-11-19 11:26
Normal topic Docking structures with ligands in cryo-EM maps
by galushin » Wed, 2012-07-11 12:40
1
3,860 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax with native fragments
by ks » Mon, 2016-09-05 03:03
5
3,843 by ks
Mon, 2016-09-12 03:14
Normal topic make_rot_lib issue
by jarek » Thu, 2013-04-11 08:21
4
3,839 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta relax problem
by jingwei xu » Wed, 2016-03-09 21:41
2
3,838 by jingwei xu
Wed, 2016-05-04 23:28
Normal topic Problems with always_constrained_relax_script
by wsgosal » Wed, 2013-05-29 04:39
3
3,823 by rmoretti
Mon, 2014-04-21 06:47
Normal topic extract_pdbs fails to open silent file when -auto_setup_metals enabled
by attesor » Thu, 2015-01-15 03:22
4
3,802 by attesor
Tue, 2015-01-27 02:20
Normal topic Antibody modeling
by Maryam_tabasinezhad » Fri, 2015-09-04 11:00
4
3,792 by rmoretti
Wed, 2015-09-09 12:08
Normal topic Error src/core/scoring/MembraneTopology.cc line: 139
by Daniel Hall » Thu, 2017-07-13 04:58
6
3,779 by rmoretti
Tue, 2017-07-18 09:00
Normal topic InterfaceAnalyzer problem
by almeida » Mon, 2014-03-03 14:56
3
3,778 by smlewis
Fri, 2014-03-07 14:09
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Thu, 2011-02-17 12:29
3
3,768 by fukamitka
Mon, 2014-04-21 06:47
Normal topic Is there a way to restrict memory usage of ddg_monomer?
by cossio » Fri, 2015-01-30 14:35
5
3,754 by rmoretti
Mon, 2015-02-09 12:04
Normal topic ddG_monomer
by cott1117 » Thu, 2014-06-12 09:53
3
3,745 by rmoretti
Wed, 2014-07-02 16:55
Normal topic fa_plane enregy term in scoring weights
by ytao » Fri, 2012-11-30 20:25
4
3,743 by smlewis
Mon, 2014-04-21 06:47
Normal topic FlexPepDocking with GDP-bound protein
by LI » Sun, 2011-06-12 20:02
3
3,743 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Protein-DNA Docking using RosettaScripts?
by brspurri » Fri, 2013-06-07 09:06
1
3,739 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Cartesian-space refinement
by sjyang7 » Wed, 2017-05-31 19:34
5
3,715 by sjyang7
Sat, 2017-06-03 06:09
Normal topic the meaning of total_score in docking
by libai2098 » Mon, 2011-03-21 05:46
2
3,707 by libai2098
Mon, 2014-04-21 06:47
Normal topic ddg_monomer conformational search...
by yperez » Wed, 2012-05-09 11:10
5
3,704 by yperez
Mon, 2014-04-21 06:47
Normal topic protein-protein docking with flexible backbone
by tim » Fri, 2013-12-20 05:52
1
3,693 by rmoretti
Mon, 2014-04-21 06:48
Normal topic extract_pdb application parse error with silent file
by staciekim » Tue, 2017-08-22 12:39
5
3,673 by rmoretti
Thu, 2017-08-24 08:19
Normal topic Rebuilding the structure from unknown residues
by sushreet » Mon, 2016-06-27 09:32
4
3,629 by rmoretti
Tue, 2016-07-12 09:35
Normal topic Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring
by brspurri » Wed, 2017-03-29 13:19
7
3,623 by matteoferla
Mon, 2021-07-19 06:13
Normal topic homology modeling- Error: length mismatch between sequence and alignment.
by pdbb » Mon, 2012-10-01 07:57
2
3,622 by pdbb
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax Disulfide Bonds are not being retained
by brspurri » Wed, 2011-09-28 13:55
1
3,613 by parmef
Mon, 2014-04-21 06:47
Normal topic How to output all iteration structures from ddg_monomer?
by cossio » Fri, 2014-12-26 13:40
4
3,599 by cossio
Mon, 2015-01-19 07:10
Normal topic favor native residue in fixBB design
by ast » Mon, 2012-12-10 06:00
4
3,586 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error when running cluster
by aloshbau » Wed, 2013-05-01 20:45
3
3,586 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ddg_monomer consumes massive RAM
by cossio » Fri, 2018-03-09 17:02
7
3,582 by rmoretti
Mon, 2018-03-19 12:12
Normal topic domain:domain fusion
by felipet » Thu, 2017-06-15 13:13
5
3,579 by felipet
Fri, 2017-06-16 11:42
Normal topic fixbb and ncaa's
by jarek » Thu, 2012-11-08 04:55
4
3,571 by jcminerlanl
Thu, 2017-12-21 10:13
Normal topic using Rosetta to compute pH dependent binding?
by JuliusSu » Sun, 2014-06-15 20:28
3
3,567 by rmoretti
Tue, 2014-06-17 08:51
Normal topic cluster.mpi running in MPI mode?
by sacch » Fri, 2011-11-18 23:30
2
3,558 by sacch
Mon, 2014-04-21 06:47
Normal topic Some wrong with the flag "-l" for score_jd2.linuxgccrelease
by lanselibai » Mon, 2014-09-29 02:29
2
3,552 by lanselibai
Tue, 2014-09-30 02:28
Normal topic Discrepancy between the total pose energy and sum of per residue energies
by vijayan » Tue, 2013-07-02 07:24
3
3,548 by rmoretti
Mon, 2014-04-21 06:48
Normal topic ERROR: no fragment to compute secondary structure
by byin » Sun, 2011-08-07 23:55
3
3,543 by smlewis
Mon, 2014-04-21 06:47
Normal topic Syntax for the alignment file in "minirosetta comparative modeling"
by lanselibai » Thu, 2014-10-16 15:29
3
3,540 by lanselibai
Thu, 2014-10-23 03:26
Normal topic pair energies across interface
by irini » Fri, 2012-02-10 09:17
5
3,538 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Make error during installation of updated ncbi-blast-2.9.0+-src plus error with nr-database
by Corvin » Tue, 2019-10-01 02:04
6
3,524 by Corvin
Tue, 2019-10-15 01:12
Normal topic membrane ab initio modeling application with constraints
by ytao » Thu, 2012-11-08 11:56
2
3,522 by ytao
Mon, 2014-04-21 06:47
Normal topic [TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed
by tevang » Wed, 2013-04-10 15:07
5
3,521 by rmoretti
Mon, 2014-04-21 06:47
Normal topic RosettaCM -weights, fragments and relax
by jsv » Tue, 2017-05-09 10:20
5
3,467 by rmoretti
Thu, 2017-06-01 08:52
Normal topic Positive scores with SymmDock in helical symmetry
by kxiao » Tue, 2014-02-11 07:37
4
3,462 by kxiao
Thu, 2014-06-05 08:37
Normal topic Symmetric Minimization
by aroop » Mon, 2012-12-17 11:45
5
3,442 by aroop
Mon, 2014-04-21 06:47
Normal topic Segmentation Fault
by ajaniharesh » Fri, 2019-03-29 11:21
4
3,441 by ajaniharesh
Thu, 2019-04-04 07:07
Normal topic a question about ligand docking
by yzhou » Wed, 2012-05-30 18:57
5
3,440 by yzhou
Mon, 2014-04-21 06:47
Normal topic Unsatisfied interface H-bond in Ligand docking
by Prasanth Kumar » Thu, 2013-07-18 12:04
1
3,439 by rmoretti
Mon, 2014-04-21 06:48
Normal topic comparative modeling of protein-ligand complex
by tevang » Mon, 2013-09-09 09:06
3
3,412 by rmoretti
Mon, 2014-04-21 06:48
Normal topic ligand dock question
by sacch » Sun, 2012-05-20 19:49
4
3,411 by sacch
Mon, 2014-04-21 06:47
Normal topic modeling an extracellular loop of a transmembrane protein
by Hothman » Fri, 2016-08-12 06:16
5
3,410 by rmoretti
Mon, 2016-09-05 10:59
Normal topic ddg monomer vs pmut scan
by dave » Tue, 2014-03-04 10:18
3
3,404 by smlewis
Fri, 2014-03-07 13:02
Normal topic RosettaCM Tutorials
by smathersc » Wed, 2017-01-11 15:59
5
3,403 by rmoretti
Thu, 2017-01-19 09:11
Normal topic docking with constraints
by talavera » Tue, 2013-05-07 01:50
1
3,397 by rmoretti
Mon, 2014-04-21 06:47
Normal topic fragment_picker with fasta only
by gw » Tue, 2011-11-15 13:20
3
3,396 by gw
Mon, 2014-04-21 06:47
Normal topic Can I assume the outputs from different runs are from a same batch?
by lanselibai » Mon, 2014-11-03 06:34
4
3,392 by lanselibai
Mon, 2014-11-03 13:15
Normal topic Loop prediction
by yzhou » Thu, 2013-07-18 14:24
3
3,381 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Homology Modelling with cofactors
by Derek Smith » Thu, 2015-07-09 08:24
3
3,366 by Derek Smith
Wed, 2016-02-03 05:47
Normal topic Warning messages in Interface analyzer output
by Pernille » Wed, 2015-03-25 00:53
4
3,364 by rmoretti
Tue, 2015-03-31 08:20
Normal topic Multistate design on Rosetta - no generations produced
by tong » Wed, 2018-06-13 00:36
8
3,361 by smlewis
Thu, 2018-06-14 10:26
Normal topic H3 modeling takes 10 days more?
by jessye » Fri, 2017-10-27 03:11
7
3,352 by jessye
Fri, 2017-11-03 20:15
Normal topic loopmodel thinks there are no residues in the pose
by lah435 » Wed, 2013-03-27 02:46
3
3,347 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains
by ahonegger » Tue, 2012-04-24 01:34
3
3,312 by ahonegger
Mon, 2014-04-21 06:47
Normal topic Re: Glutamic acid protonation
by bharat_46010 » Fri, 2017-02-10 03:08
4
3,310 by rmoretti
Mon, 2017-02-20 08:09
Normal topic Pepspec Errors running 3.4
by rrphenix » Tue, 2013-05-28 12:08
4
3,299 by rmoretti
Mon, 2014-04-21 06:47
Normal topic InterfaceAnalyzer dSasa calculation
by mintseris » Wed, 2015-09-02 09:43
2
3,296 by jadolfbr
Thu, 2015-09-03 16:18
Normal topic pmut_scan does not produce log file
by fglaser » Wed, 2013-10-16 07:25
3
3,296 by matteoferla
Tue, 2018-10-30 02:54
Normal topic Ligand Docking with Rosetta Scripts memory problem
by Swillard » Thu, 2017-08-17 14:59
5
3,263 by rmoretti
Mon, 2018-11-12 14:31
Normal topic Problems running pmut in parallel with openmpi
by RMJ » Fri, 2012-09-21 06:25
2
3,248 by RMJ
Mon, 2014-04-21 06:47
Normal topic comparative modelling and broker
by felipet » Tue, 2013-02-05 08:33
4
3,229 by smlewis
Mon, 2014-04-21 06:47
Normal topic HBNet and RosettaScripts
by protos_heis » Tue, 2014-08-05 06:05
3
3,224 by protos_heis
Tue, 2014-08-05 12:47
Normal topic rosetta3.4 fragment file problem
by David Hoover » Wed, 2012-05-16 14:42
4
3,208 by dgront
Mon, 2014-04-21 06:47
Normal topic partial ab initio modeling
by fred » Wed, 2011-08-17 14:14
3
3,199 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta ScriptsFeatures Reporter issue
by David Weis » Sun, 2017-03-12 08:19
5
3,199 by David Weis
Mon, 2017-03-13 10:59
Normal topic InterfaceAnalyzer:“too many tries in fill_missing_atoms!”
by mxp » Tue, 2019-08-06 00:41
8
3,194 by mxp
Mon, 2019-08-12 18:42
Normal topic Changing scoring function for fixbb protocol
by mdyini » Sat, 2012-07-07 18:43
4
3,190 by mdyini
Mon, 2014-04-21 06:47
Normal topic Error when running Remodel with EnzDes constraint file
by aloshbau » Wed, 2013-04-17 22:23
2
3,189 by aloshbau
Mon, 2014-04-21 06:47
Normal topic A question on the logic of enzyme design
by agulsevin » Thu, 2013-06-13 08:10
2
3,188 by agulsevin
Mon, 2014-04-21 06:48
Normal topic RosettaScripts - FastRelax loops
by jtmacd » Wed, 2015-11-18 09:32
2
3,154 by jtmacd
Fri, 2015-12-04 03:11
Normal topic score_jd2.linuxgccrelease documentation
by fglaser » Mon, 2011-08-01 04:08
1
3,153 by smlewis
Mon, 2014-04-21 06:47
Normal topic Constraints in RosettaCM
by kbuhr » Fri, 2015-07-31 06:55
3
3,144 by kbuhr
Mon, 2016-03-28 01:08
Normal topic jd2 quits before reaching -nstruct # in roseta_scripts.mpi.linuxgccrelease
by fradom » Mon, 2017-11-27 02:55
6
3,141 by fradom
Tue, 2017-12-05 01:52
Normal topic Syntax to extract PDB files from a silent file
by lanselibai » Fri, 2014-09-26 13:48
1
3,141 by lanselibai
Fri, 2014-09-26 14:58
Normal topic flexpepdock flag "-packing:unboundrot"
by gw » Mon, 2011-07-11 12:23
2
3,130 by Ora Schueler-Furman
Mon, 2014-04-21 06:47
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