You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
Topic / Topic starter | Replies | Views | Last post | |
---|---|---|---|---|
ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator> by DGR95 » Fri, 2021-04-16 19:26 |
4 |
2,306 |
by DGR95 Wed, 2021-04-28 16:13 |
|
Problem readin .ccp4 map file by jljbbc » Tue, 2011-05-03 11:29 |
4 |
5,776 |
by jljbbc Mon, 2014-04-21 06:47 |
|
null mutation with ddg_monomer by fred » Fri, 2012-05-11 07:16 |
4 |
4,214 |
by fred Mon, 2014-04-21 06:47 |
|
How to estimate the effect of a mutation on the binding energy? by ltrabuco » Tue, 2011-02-15 08:02 |
4 |
5,475 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
fixbb with symmetry error by Prasanth Kumar » Sun, 2014-01-26 10:56 |
4 |
5,507 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
|
favor native residue in fixBB design by ast » Mon, 2012-12-10 06:00 |
4 |
4,812 |
by smlewis Mon, 2014-04-21 06:47 |
|
Loop modelling before peptide docking by wsgosal » Tue, 2013-10-01 07:24 |
4 |
5,310 |
by wsgosal Mon, 2014-04-21 06:48 |
|
Abinitio.relax problem on centos by krlitros87 » Wed, 2014-09-24 11:27 |
4 |
5,843 |
by jadolfbr Tue, 2014-10-07 16:05 |
|
Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-' by AG88 » Thu, 2011-11-03 01:25 |
4 |
7,706 |
by weitzner Mon, 2014-04-21 06:47 |
|
ReplicaDock2.0 demo fails with MPIFileBufJobDistributor: (1) [ ERROR ] by erpannec » Tue, 2022-08-09 05:42 |
4 |
1,846 |
by erpannec Thu, 2022-09-15 05:17 |
|
RosettaDesign error with Option file open failed by xingqing326 » Sun, 2020-04-19 01:56 |
4 |
3,965 |
by xingqing326 Tue, 2020-04-21 19:11 |
|
Rebuilding the structure from unknown residues by sushreet » Mon, 2016-06-27 09:32 |
4 |
5,244 |
by rmoretti Tue, 2016-07-12 09:35 |
|
extract_pdbs fails to open silent file when -auto_setup_metals enabled by attesor » Thu, 2015-01-15 03:22 |
4 |
5,040 |
by attesor Tue, 2015-01-27 02:20 |
|
Score Functions for Ligand-protein Docking by ziruiw » Sun, 2021-04-25 13:41 |
4 |
3,195 |
by ziruiw Fri, 2021-04-30 12:01 |
|
ligand dock question by sacch » Sun, 2012-05-20 19:49 |
4 |
4,502 |
by sacch Mon, 2014-04-21 06:47 |
|
Docking to TM protein plus lipid bilayer by renedominik » Tue, 2019-03-12 06:58 |
4 |
3,578 |
by elpipasp Thu, 2023-10-19 04:37 |
|
fa_plane enregy term in scoring weights by ytao » Fri, 2012-11-30 20:25 |
4 |
5,014 |
by smlewis Mon, 2014-04-21 06:47 |
|
rosetta backrub by ladimafakher » Thu, 2018-10-04 08:01 |
4 |
3,452 |
by ladimafakher Thu, 2018-11-01 03:47 |
|
homology modelling with DNA by zadie1118 » Fri, 2012-09-28 06:35 |
4 |
5,778 |
by rmoretti Mon, 2014-04-21 06:47 |
|
Segmentation Fault by ajaniharesh » Fri, 2019-03-29 11:21 |
4 |
6,170 |
by ajaniharesh Thu, 2019-04-04 07:07 |
|
Relax with protein+complex by Prasanth Kumar » Wed, 2013-05-08 23:16 |
4 |
5,779 |
by Prasanth Kumar Mon, 2014-04-21 06:47 |
|
Lammps or RosettaSurface by StevPChem » Fri, 2016-06-10 10:13 |
3 |
3,946 |
by Anpu Tue, 2018-09-25 18:53 |
|
relax with resfile by gw » Fri, 2011-08-05 10:57 |
3 |
6,184 |
by nannemdp Mon, 2014-04-21 06:47 |
|
Extract PDB structures from database by cossio » Mon, 2018-01-29 09:30 |
3 |
3,840 |
by rmoretti Fri, 2018-11-23 11:23 |
|
How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI by kingljy » Sun, 2017-09-24 18:37 |
3 |
3,798 |
by rmoretti Tue, 2017-10-10 09:58 |
|
"Install_dependencies.pl" gives "Aborted" when downloading "nr" database? by Danielsebas » Sat, 2019-09-14 08:53 |
3 |
2,278 |
by danpf Mon, 2019-09-16 09:51 |
|
Does it make sense if I do backrub after sequence design? by johnnytam100 » Thu, 2019-08-15 05:15 |
3 |
2,333 |
by johnnytam100 Fri, 2019-08-16 00:20 |
|
RosettaCM or FastRelax? by Tianyang89 » Wed, 2020-09-23 07:46 |
3 |
2,152 |
by danpf Thu, 2020-09-24 13:44 |
|
Problem with symmetric docking by saxen » Fri, 2011-04-29 15:15 |
3 |
4,128 |
by smlewis Mon, 2014-04-21 06:47 |
|
Syntax for the alignment file in "minirosetta comparative modeling" by lanselibai » Thu, 2014-10-16 15:29 |
3 |
4,580 |
by lanselibai Thu, 2014-10-23 03:26 |
|
Constraints in RosettaCM by kbuhr » Fri, 2015-07-31 06:55 |
3 |
4,202 |
by kbuhr Mon, 2016-03-28 01:08 |
|
Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex by benhardy » Mon, 2020-06-15 09:33 |
3 |
2,171 |
by benhardy Fri, 2020-06-19 07:55 |
|
scoring input pdbs as the same as docking score by hamedkhakzad » Fri, 2016-07-01 07:15 |
3 |
3,695 |
by rmoretti Tue, 2016-07-12 09:05 |
|
KIC with fragments versus Next generation KIC by Loki01 » Fri, 2018-09-07 05:06 |
3 |
2,940 |
by smlewis Mon, 2018-09-10 11:48 |
|
Transmembrane helix fold-and-dock? by sarah_b » Tue, 2020-05-12 02:09 |
3 |
2,310 |
by jkleman Tue, 2020-05-19 15:02 |
|
Why is proline hydroxylated? by kwonglynn » Tue, 2013-06-25 02:38 |
3 |
5,245 |
by rmoretti Mon, 2014-04-21 06:48 |
|
ddG_monomer by cott1117 » Thu, 2014-06-12 09:53 |
3 |
5,132 |
by rmoretti Wed, 2014-07-02 16:55 |
|
Missing CS-HM-Rosetta Binary files by Marius1987 » Wed, 2016-02-10 05:52 |
3 |
3,914 |
by Marius1987 Mon, 2016-03-14 04:34 |
|
Threading a sequence onto a template with ligands/metal ions included by ajkal » Wed, 2017-04-19 11:53 |
3 |
3,625 |
by ahmadkhalifa Sun, 2019-03-31 23:27 |
|
dihedral_between_bonded_children: atoms are not both my children! by pdbb » Fri, 2013-04-05 06:40 |
3 |
3,360 |
by smlewis Mon, 2014-04-21 06:47 |
|
Homodimer interface design by petrikigor » Fri, 2012-11-16 10:57 |
3 |
5,016 |
by rmoretti Mon, 2014-04-21 06:47 |
|
Rosetta make_fragments.pl error? by Danielsebas » Mon, 2019-09-02 07:51 |
3 |
2,431 |
by Danielsebas Thu, 2019-09-05 03:35 |
|
pdb2vall by JadAbbass » Mon, 2013-07-08 12:11 |
3 |
3,916 |
by rmoretti Mon, 2014-04-21 06:48 |
|
FlexPepDock for protein containing multiple chains by Dimitrov » Mon, 2012-10-08 08:31 |
3 |
4,026 |
by smlewis Mon, 2014-04-21 06:47 |
|
De novo model-building guided by exprimental density data by dee2711453 » Thu, 2016-03-10 17:28 |
3 |
3,628 |
by dee2711453 Fri, 2016-03-11 21:32 |
|
The question of ligand docking with constraints by asbelx » Mon, 2018-06-11 09:39 |
3 |
3,222 |
by rmoretti Thu, 2018-06-28 12:58 |
|
Error when running cluster by aloshbau » Wed, 2013-05-01 20:45 |
3 |
4,687 |
by rmoretti Mon, 2014-04-21 06:47 |
|
cluster.mpi.linuxgccrelease failed by fred » Mon, 2014-02-24 12:11 |
3 |
8,085 |
by fred Thu, 2014-03-27 11:29 |
|
deltaG calculations by Prasanth Kumar » Wed, 2013-05-15 07:06 |
3 |
6,421 |
by rmoretti Mon, 2014-04-21 06:47 |
|
what does initialize_rigid_body_dofs do? by attesor » Mon, 2015-10-26 05:12 |
3 |
3,968 |
by rmoretti Tue, 2015-11-10 11:35 |
|
HBNet and RosettaScripts by protos_heis » Tue, 2014-08-05 06:05 |
3 |
4,254 |
by protos_heis Tue, 2014-08-05 12:47 |
|
Enzdes constraint file not defined correctly by eyong123 » Fri, 2015-03-27 07:16 |
3 |
3,860 |
by rmoretti Thu, 2015-04-16 10:38 |
|
error with fragment_picker.linuxgccrelease by jiongzhang » Tue, 2012-04-17 09:07 |
3 |
3,584 |
by smlewis Mon, 2014-04-21 06:47 |
|
Docking one protein into interface between two other proteins by Cheems » Sat, 2023-05-06 09:49 |
3 |
828 |
by rmoretti Mon, 2023-05-08 13:14 |
|
comparative modeling of protein-ligand complex by tevang » Mon, 2013-09-09 09:06 |
3 |
4,387 |
by rmoretti Mon, 2014-04-21 06:48 |
|
sam.predict-2nd for make_fragments.pl script by sumukh21 » Thu, 2011-02-17 12:29 |
3 |
4,811 |
by fukamitka Mon, 2014-04-21 06:47 |
|
Up to date Vall database by JadAbbass » Sat, 2013-06-29 10:35 |
3 |
5,884 |
by rmoretti Tue, 2017-06-20 09:02 |
|
Missing common atom definitions in constraints by ic3reyes » Sat, 2011-06-11 13:09 |
3 |
5,139 |
by smlewis Mon, 2014-04-21 06:47 |
|
Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file? by lanselibai » Sun, 2014-11-16 10:26 |
3 |
3,850 |
by G Mustafa Thu, 2018-10-18 05:31 |
|
How tu use Delta filter's relax_mover by pocin » Sun, 2017-02-19 05:21 |
3 |
3,313 |
by rmoretti Wed, 2017-03-01 13:10 |
|
Allow region of protein to move in a certain direction by sn » Wed, 2017-08-23 17:07 |
3 |
3,289 |
by rmoretti Thu, 2017-08-24 11:00 |
|
fragment_picker with fasta only by gw » Tue, 2011-11-15 13:20 |
3 |
4,432 |
by gw Mon, 2014-04-21 06:47 |
|
Modeling of side-chains onto membrane ab initio cluster? by akfried » Thu, 2011-06-23 04:03 |
3 |
4,065 |
by nkemjika Mon, 2014-04-21 06:47 |
|
Residue_energy_breakdown utility by cn » Sat, 2012-03-17 06:11 |
3 |
3,622 |
by cn Mon, 2014-04-21 06:47 |
|
NCAA attached at two points by tsztain » Wed, 2021-06-16 15:20 |
3 |
1,806 |
by matteoferla Sat, 2021-06-19 03:07 |
|
Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB" by brspurri » Fri, 2017-03-24 10:52 |
3 |
3,758 |
by brspurri Fri, 2017-03-24 11:35 |
|
protein protein interaction design by Negarsardar » Wed, 2019-05-15 06:13 |
3 |
3,574 |
by ajasja Wed, 2019-05-15 15:40 |
|
Using Rosetta Docking for nucleic acids by Adrien Guilhot » Thu, 2011-04-28 06:16 |
3 |
5,129 |
by Adrien Guilhot Mon, 2014-04-21 06:47 |
|
No Space by jrcf » Mon, 2016-01-11 16:18 |
3 |
3,496 |
by jrcf Fri, 2016-02-12 16:42 |
|
Negative Design by rbjacob » Thu, 2018-10-11 09:18 |
3 |
2,913 |
by smlewis Mon, 2018-10-15 08:42 |
|
ddg_monomer.mpi by gw » Thu, 2011-10-27 16:45 |
3 |
4,210 |
by smlewis Mon, 2014-04-21 06:47 |
|
How to preserve ACE/NME termini? by nitroamos » Tue, 2018-05-22 13:07 |
3 |
3,751 |
by rmoretti Thu, 2018-06-28 12:44 |
|
Error encountered during Rosetta loop modeling by max » Tue, 2014-11-25 02:17 |
3 |
3,835 |
by max Thu, 2014-11-27 02:56 |
|
Loop modeling with constraints by agctomer » Sat, 2021-03-20 03:53 |
3 |
1,952 |
by agctomer Thu, 2021-04-08 07:37 |
|
assymetric dymer modelling with comparative and ab initio by marcia » Mon, 2013-10-14 08:33 |
3 |
4,896 |
by rmoretti Mon, 2014-04-21 06:48 |
|
ddg_monomer: what is the theoretical solution condition for the scoring? by lanselibai » Sat, 2016-04-30 03:26 |
3 |
3,884 |
by smlewis Mon, 2016-05-02 08:20 |
|
clustering in RosettaRemodel by cheyuk » Wed, 2014-04-23 03:09 |
3 |
4,062 |
by rmoretti Mon, 2014-05-12 08:45 |
|
partial ab initio modeling by fred » Wed, 2011-08-17 14:14 |
3 |
4,212 |
by smlewis Mon, 2014-04-21 06:47 |
|
relax a protein with phosphorylated serine residue by zruan » Thu, 2018-02-01 09:18 |
3 |
2,964 |
by rmoretti Tue, 2018-02-06 09:47 |
|
Relax both peptide and ligands by matteoferla » Thu, 2018-09-13 03:11 |
3 |
2,705 |
by smlewis Fri, 2018-09-14 10:34 |
|
New CSRosetta toolbox by sn » Mon, 2017-04-24 12:42 |
3 |
2,888 |
by rmoretti Tue, 2017-04-25 06:41 |
|
How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior ) by asbelx » Sat, 2019-06-08 00:07 |
3 |
2,631 |
by happycaapi Tue, 2021-06-29 15:35 |
|
Are catalytic residues mutatable? by uka147 » Thu, 2023-10-26 03:49 |
3 |
565 |
by uka147 Mon, 2023-10-30 01:53 |
|
Can only relax one structure at a time by lah435 » Wed, 2012-12-12 01:55 |
3 |
3,948 |
by smlewis Mon, 2014-04-21 06:47 |
|
ddg monomer vs pmut scan by dave » Tue, 2014-03-04 10:18 |
3 |
4,485 |
by smlewis Fri, 2014-03-07 13:02 |
|
pmut_scan does not produce log file by fglaser » Wed, 2013-10-16 07:25 |
3 |
4,414 |
by matteoferla Tue, 2018-10-30 02:54 |
|
auto_setup_metals flag with loop modeling application fails by beowulfey » Wed, 2015-06-10 07:44 |
3 |
4,270 |
by beowulfey Tue, 2015-06-23 16:10 |
|
RosettaScripts filter BuriedUnsatHbonds2 missing still by zdaw » Fri, 2020-12-11 12:39 |
3 |
1,838 |
by zdaw Tue, 2020-12-15 15:38 |
|
ligand_docking_error by Alison_Yajie » Mon, 2020-04-20 12:27 |
3 |
2,256 |
by YuFei Sat, 2020-05-30 00:12 |
|
remodel gives no output by coomteng@gmail.com » Tue, 2018-03-06 07:40 |
3 |
3,257 |
by rmoretti Wed, 2018-03-07 08:44 |
|
Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains by ahonegger » Tue, 2012-04-24 01:34 |
3 |
4,195 |
by ahonegger Mon, 2014-04-21 06:47 |
|
Model truncated proteins by BuddySphinx » Wed, 2018-12-12 10:32 |
3 |
2,865 |
by smlewis Wed, 2018-12-12 16:51 |
|
revert_design_to_native app comparison to FavorNativeResidue mover by nwhoppe » Wed, 2016-06-29 14:35 |
3 |
4,190 |
by rmoretti Tue, 2016-07-12 09:30 |
|
The confussion about an example in tutorial in Rosetta Virtual Workshop 2020 by ldx022 » Tue, 2022-11-29 04:58 |
3 |
4,352 |
by ldx022 Tue, 2022-11-29 08:38 |
|
xyzVector error in Enzyme design by ajmbarbosa » Tue, 2016-01-05 09:46 |
3 |
4,325 |
by rmoretti Fri, 2016-06-17 10:36 |
|
Deciding -nstruct for RNA FARFAR2 by mandar » Thu, 2024-03-07 22:16 |
3 |
160 |
by mandar Thu, 2024-03-14 22:25 |
|
loopmodel thinks there are no residues in the pose by lah435 » Wed, 2013-03-27 02:46 |
3 |
4,233 |
by rmoretti Mon, 2014-04-21 06:47 |
|
Ligand dock analysis by sacch » Tue, 2012-05-22 01:20 |
3 |
3,905 |
by glemmon Mon, 2014-04-21 06:47 |
|
Per residue scoring by chelsell » Mon, 2015-08-17 14:43 |
3 |
4,197 |
by rmoretti Wed, 2015-09-02 12:33 |
|
RosettaCM input file for running on Stampede by smathersc » Wed, 2017-01-18 16:12 |
3 |
3,224 |
by rmoretti Thu, 2017-02-02 09:02 |
Log in to post new content in the forum.