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Rosetta 3 - Applications

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Normal topic Relax with protein+complex
by Prasanth Kumar » Wed, 2013-05-08 23:16
4
5,976 by Prasanth Kumar
Mon, 2014-04-21 06:47
Normal topic select_best_unique_ligand_poses - Ligand docking
by subha » Thu, 2018-04-19 10:36
4
3,460 by subha
Fri, 2018-04-20 12:49
Normal topic antibody_numbering_converter cannot recognize the IMGT scheme
by cryosky » Sat, 2020-02-29 23:12
4
3,191 by jadolfbr
Sun, 2020-03-01 14:54
Normal topic Error when running Remodel with EnzDes constraint file to extend c-terminal
by Jeffrey_Chen » Thu, 2017-01-19 06:20
4
4,501 by dfcoelho
Tue, 2017-10-17 11:52
Normal topic Error while reading in silent file
by rweisse » Mon, 2015-04-20 00:31
4
5,729 by rmoretti
Thu, 2015-04-30 16:46
Normal topic conformational sampling of multi domain protein
by dhirajks » Tue, 2017-07-04 11:20
4
3,932 by jrporter
Wed, 2017-07-05 06:30
Normal topic Error while running RosettaLigand
by Ryhon Wang » Tue, 2013-07-30 02:51
4
5,251 by Ryhon Wang
Mon, 2014-04-21 06:48
Normal topic flexpep docking problem-----How to do with phosphorylation peptide?
by MajorID » Thu, 2011-06-02 00:37
4
6,472 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Re: Glutamic acid protonation
by bharat_46010 » Fri, 2017-02-10 03:08
4
4,964 by rmoretti
Mon, 2017-02-20 08:09
Normal topic Positive scores with SymmDock in helical symmetry
by kxiao » Tue, 2014-02-11 07:37
4
4,818 by kxiao
Thu, 2014-06-05 08:37
Normal topic mr_protocols with symmetry and ligand
by jhm13c » Mon, 2017-02-27 11:59
4
3,944 by jhm13c
Thu, 2017-03-02 12:01
Normal topic "Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application
by xfliu » Thu, 2012-06-21 09:07
4
5,286 by smlewis
Mon, 2014-04-21 06:47
Normal topic When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error
by Martin Floor » Thu, 2020-09-17 06:01
4
2,959 by Martin Floor
Tue, 2020-09-22 00:48
Normal topic ddg_monomer: what is the meaning of "total score" and "score"?
by lanselibai » Tue, 2015-01-13 14:49
4
7,007 by rmoretti
Thu, 2015-04-16 11:23
Normal topic RosettaAntibody3 is failing with "Error: no input sequences were specified!"
by brspurri » Sun, 2020-08-16 16:16
4
2,919 by brspurri
Tue, 2020-08-18 09:57
Normal topic ddg_monomer and membrane proteins
by afmo » Tue, 2014-05-20 02:37
4
5,890 by afmo
Thu, 2014-05-22 01:19
Normal topic simple_cycpep_predict - Design mode - The base name "ARG" was added more than once
by almeida85 » Thu, 2022-08-04 02:57
4
1,895 by almeida85
Thu, 2022-08-11 00:58
Normal topic side chain repacking error
by malkeet.singh » Thu, 2017-12-07 04:49
4
4,289 by smlewis
Wed, 2017-12-13 09:54
Normal topic Any backrub expert?
by johnnytam100 » Fri, 2019-03-01 01:58
4
3,748 by johnnytam100
Sun, 2019-03-03 23:42
Normal topic Rosetta antibody- modeling in the presense of an antigen
by agctomer » Mon, 2021-02-01 03:19
4
2,269 by nannemdp
Wed, 2021-02-03 08:52
Normal topic relax protein with multi-conformer bound ligand
by xfradera » Thu, 2023-01-12 09:10
4
3,615 by rmoretti
Mon, 2023-02-06 15:06
Normal topic Allow region of protein to move in a certain direction
by sn » Wed, 2017-08-23 17:07
3
3,425 by rmoretti
Thu, 2017-08-24 11:00
Normal topic Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file?
by lanselibai » Sun, 2014-11-16 10:26
3
3,994 by G Mustafa
Thu, 2018-10-18 05:31
Normal topic How tu use Delta filter's relax_mover
by pocin » Sun, 2017-02-19 05:21
3
3,437 by rmoretti
Wed, 2017-03-01 13:10
Normal topic NCAA attached at two points
by tsztain » Wed, 2021-06-16 15:20
3
1,963 by matteoferla
Sat, 2021-06-19 03:07
Normal topic Up to date Vall database
by JadAbbass » Sat, 2013-06-29 10:35
3
6,059 by rmoretti
Tue, 2017-06-20 09:02
Normal topic ddg monomer vs pmut scan
by dave » Tue, 2014-03-04 10:18
3
4,615 by smlewis
Fri, 2014-03-07 13:02
Normal topic Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB"
by brspurri » Fri, 2017-03-24 10:52
3
3,919 by brspurri
Fri, 2017-03-24 11:35
Normal topic protein protein interaction design
by Negarsardar » Wed, 2019-05-15 06:13
3
3,750 by ajasja
Wed, 2019-05-15 15:40
Normal topic pmut_scan does not produce log file
by fglaser » Wed, 2013-10-16 07:25
3
4,543 by matteoferla
Tue, 2018-10-30 02:54
Normal topic No Space
by jrcf » Mon, 2016-01-11 16:18
3
3,615 by jrcf
Fri, 2016-02-12 16:42
Normal topic Residue_energy_breakdown utility
by cn » Sat, 2012-03-17 06:11
3
3,777 by cn
Mon, 2014-04-21 06:47
Normal topic How to preserve ACE/NME termini?
by nitroamos » Tue, 2018-05-22 13:07
3
3,907 by rmoretti
Thu, 2018-06-28 12:44
Normal topic Negative Design
by rbjacob » Thu, 2018-10-11 09:18
3
3,056 by smlewis
Mon, 2018-10-15 08:42
Normal topic score to use for picking top docking solutions?
by sudhar » Tue, 2011-06-14 06:47
3
6,077 by weitzner
Mon, 2014-04-21 06:47
Normal topic ddg_monomer: what is the theoretical solution condition for the scoring?
by lanselibai » Sat, 2016-04-30 03:26
3
3,995 by smlewis
Mon, 2016-05-02 08:20
Normal topic Error encountered during Rosetta loop modeling
by max » Tue, 2014-11-25 02:17
3
3,977 by max
Thu, 2014-11-27 02:56
Normal topic Loop modeling with constraints
by agctomer » Sat, 2021-03-20 03:53
3
2,131 by agctomer
Thu, 2021-04-08 07:37
Normal topic relax a protein with phosphorylated serine residue
by zruan » Thu, 2018-02-01 09:18
3
3,098 by rmoretti
Tue, 2018-02-06 09:47
Normal topic RosettaAntibody
by mpendleton » Mon, 2011-04-04 10:27
3
5,141 by jianqing
Mon, 2014-04-21 06:47
Normal topic ERROR: no fragment to compute secondary structure
by byin » Sun, 2011-08-07 23:55
3
4,662 by smlewis
Mon, 2014-04-21 06:47
Normal topic New CSRosetta toolbox
by sn » Mon, 2017-04-24 12:42
3
3,012 by rmoretti
Tue, 2017-04-25 06:41
Normal topic How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior )
by asbelx » Sat, 2019-06-08 00:07
3
2,788 by happycaapi
Tue, 2021-06-29 15:35
Normal topic Abrelax - Dunbrack02.lib.bin missing
by omirus » Sun, 2011-09-18 06:30
3
5,080 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax both peptide and ligands
by matteoferla » Thu, 2018-09-13 03:11
3
2,819 by smlewis
Fri, 2018-09-14 10:34
Normal topic using Rosetta to compute pH dependent binding?
by JuliusSu » Sun, 2014-06-15 20:28
3
5,731 by rmoretti
Tue, 2014-06-17 08:51
Normal topic Are catalytic residues mutatable?
by uka147 » Thu, 2023-10-26 03:49
3
782 by uka147
Mon, 2023-10-30 01:53
Normal topic auto_setup_metals flag with loop modeling application fails
by beowulfey » Wed, 2015-06-10 07:44
3
4,405 by beowulfey
Tue, 2015-06-23 16:10
Normal topic RosettaScripts filter BuriedUnsatHbonds2 missing still
by zdaw » Fri, 2020-12-11 12:39
3
1,944 by zdaw
Tue, 2020-12-15 15:38
Normal topic InterfaceAnalyzer problem
by almeida » Mon, 2014-03-03 14:56
3
5,101 by smlewis
Fri, 2014-03-07 14:09
Normal topic remodel gives no output
by coomteng@gmail.com » Tue, 2018-03-06 07:40
3
3,445 by rmoretti
Wed, 2018-03-07 08:44
Normal topic Can only relax one structure at a time
by lah435 » Wed, 2012-12-12 01:55
3
4,066 by smlewis
Mon, 2014-04-21 06:47
Normal topic Model truncated proteins
by BuddySphinx » Wed, 2018-12-12 10:32
3
3,044 by smlewis
Wed, 2018-12-12 16:51
Normal topic ligand_docking_error
by Alison_Yajie » Mon, 2020-04-20 12:27
3
2,371 by YuFei
Sat, 2020-05-30 00:12
Normal topic High energies after loopmodel run
by michki » Thu, 2014-05-08 05:14
3
4,073 by rmoretti
Mon, 2014-05-12 15:16
Normal topic xyzVector error in Enzyme design
by ajmbarbosa » Tue, 2016-01-05 09:46
3
4,468 by rmoretti
Fri, 2016-06-17 10:36
Normal topic Deciding -nstruct for RNA FARFAR2
by mandar » Thu, 2024-03-07 22:16
3
473 by mandar
Thu, 2024-03-14 22:25
Normal topic Per residue scoring
by chelsell » Mon, 2015-08-17 14:43
3
4,327 by rmoretti
Wed, 2015-09-02 12:33
Normal topic RosettaCM input file for running on Stampede
by smathersc » Wed, 2017-01-18 16:12
3
3,339 by rmoretti
Thu, 2017-02-02 09:02
Normal topic Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB
by rlwoltz » Thu, 2019-01-24 19:43
3
4,460 by bjharris
Sun, 2020-08-23 14:03
Normal topic DockingProtocol
by Soler » Fri, 2022-02-11 00:12
3
2,192 by gezmi
Tue, 2022-02-15 21:47
Normal topic revert_design_to_native app comparison to FavorNativeResidue mover
by nwhoppe » Wed, 2016-06-29 14:35
3
4,312 by rmoretti
Tue, 2016-07-12 09:30
Normal topic The confussion about an example in tutorial in Rosetta Virtual Workshop 2020
by ldx022 » Tue, 2022-11-29 04:58
3
4,538 by ldx022
Tue, 2022-11-29 08:38
Normal topic Docking membrane ions and water
by jrcf » Tue, 2017-02-07 15:47
3
3,387 by smlewis
Wed, 2017-02-15 07:43
Normal topic Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains
by ahonegger » Tue, 2012-04-24 01:34
3
4,291 by ahonegger
Mon, 2014-04-21 06:47
Normal topic RosettaDock 4.0 ambiguous ERROR
by sam_dc » Fri, 2022-03-18 09:36
3
2,206 by rmoretti
Tue, 2022-03-22 09:10
Normal topic Relax is resulting in a Segmentation Fault
by brspurri » Thu, 2017-08-24 18:46
3
3,944 by brspurri
Sat, 2017-08-26 07:08
Normal topic What is a rational minimal value for the "-nstruct" option
by Sunyp_IM » Fri, 2020-05-22 01:28
3
2,305 by nannemdp
Sun, 2020-05-24 14:46
Normal topic FlexPepDocking with GDP-bound protein
by LI » Sun, 2011-06-12 20:02
3
4,887 by rmoretti
Mon, 2014-04-21 06:47
Normal topic loopmodel thinks there are no residues in the pose
by lah435 » Wed, 2013-03-27 02:46
3
4,328 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Ligand dock analysis
by sacch » Tue, 2012-05-22 01:20
3
4,011 by glemmon
Mon, 2014-04-21 06:47
Normal topic Comparative modeling of metalloproteins
by ctqwong » Sun, 2020-07-12 13:51
3
2,206 by ctqwong
Mon, 2020-07-27 01:48
Normal topic issues about cstfile in RosettaMatch
by Nicole Deng » Fri, 2020-12-18 05:44
3
2,929 by He Xiao
Sun, 2021-04-11 19:29
Normal topic PDB file showing error - missing heavyatom: OXT on residue LYS:CtermProteinFull 59
by intomybioverse » Wed, 2024-05-15 23:38
3
269 by rmoretti
Mon, 2024-05-20 07:22
Normal topic Discrepancy between the total pose energy and sum of per residue energies
by vijayan » Tue, 2013-07-02 07:24
3
4,656 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Loop design with length variation
by jarod » Thu, 2016-06-16 19:54
3
4,055 by rmoretti
Tue, 2016-07-12 09:41
Normal topic Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease?
by lanselibai » Thu, 2015-01-08 03:23
3
3,763 by lanselibai
Tue, 2015-01-13 14:25
Normal topic Behavior of nstruct
by johnnytam100 » Wed, 2019-05-15 22:22
3
3,403 by johnnytam100
Tue, 2019-05-21 20:48
Normal topic What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"?
by lanselibai » Fri, 2014-10-17 06:06
3
21,195 by rmoretti
Fri, 2014-10-17 10:17
Normal topic relax with resfile
by gw » Fri, 2011-08-05 10:57
3
6,350 by nannemdp
Mon, 2014-04-21 06:47
Normal topic Loop prediction
by yzhou » Thu, 2013-07-18 14:24
3
4,433 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic RosettaCM
by DmitriiN » Sun, 2017-01-22 17:52
3
3,173 by smlewis
Mon, 2017-01-23 06:26
Normal topic Problem with symmetric docking
by saxen » Fri, 2011-04-29 15:15
3
4,263 by smlewis
Mon, 2014-04-21 06:47
Normal topic Running snugdock was crashed by "segmentation fault"
by Sunyp_IM » Mon, 2017-08-21 05:03
3
3,120 by rmoretti
Tue, 2017-08-22 09:03
Normal topic relax and movemap
by Alison_Yajie » Wed, 2020-05-20 21:27
3
2,475 by smlewis
Thu, 2020-05-21 21:05
Normal topic ddG_monomer
by cott1117 » Thu, 2014-06-12 09:53
3
5,288 by rmoretti
Wed, 2014-07-02 16:55
Normal topic strange effect in: SymDock.linuxgccrelease
by ast » Tue, 2013-06-11 11:05
3
3,960 by ast
Mon, 2014-04-21 06:48
Normal topic make fragment
by zadie1118 » Thu, 2012-08-30 07:45
3
5,341 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta Ligand Ensemble
by malfonsoprieto » Wed, 2021-05-26 10:21
3
2,120 by vizcarra
Thu, 2021-08-26 10:16
Normal topic proline patching problem
by xun » Tue, 2012-01-03 11:15
3
4,103 by xun
Mon, 2014-04-21 06:47
Normal topic Filter based on ligand_is_touching
by Swillard » Mon, 2017-09-11 19:00
3
3,162 by rmoretti
Mon, 2018-11-12 14:35
Normal topic RNA modeling with step wise Monte Carlo error
by szcshr123 » Mon, 2020-12-07 18:08
3
2,026 by everyday847
Wed, 2020-12-09 21:46
Normal topic cluster.mpi.linuxgccrelease failed
by fred » Mon, 2014-02-24 12:11
3
8,218 by fred
Thu, 2014-03-27 11:29
Normal topic Perform MPI relax with movemap files
by sn » Sun, 2017-03-05 13:18
3
3,572 by sn
Mon, 2017-03-06 10:03
Normal topic clean_pdb not working
by Andre Serobian » Thu, 2020-07-23 04:48
3
2,679 by rmoretti
Tue, 2020-07-28 08:24
Normal topic Different scoring applications (score vs score_aln vs score_jd2, etc.)?
by cossio » Fri, 2014-12-26 07:19
3
4,961 by Patrícia Antunes
Fri, 2023-01-20 11:55
Normal topic Error about rifdocking step 12
by ng98 » Mon, 2024-01-08 16:27
3
655 by ng98
Tue, 2024-01-09 23:42
Normal topic Homology Modelling with cofactors
by Derek Smith » Thu, 2015-07-09 08:24
3
4,713 by Derek Smith
Wed, 2016-02-03 05:47
Normal topic how to make "static" built binaries use multiple cpus like "mpi"?
by Danielsebas » Wed, 2019-09-18 06:41
3
2,775 by rmoretti
Wed, 2019-09-18 10:21
Normal topic HBNet and RosettaScripts
by protos_heis » Tue, 2014-08-05 06:05
3
4,350 by protos_heis
Tue, 2014-08-05 12:47
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