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Rosetta 3 - Applications
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Thread target sequence by duz » Thu, 2021-04-01 10:09 |
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1,371 |
by duz Mon, 2021-05-03 07:50 |
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Sequence design with mixed fixbb-relax protocol by kszczepaniak » Thu, 2013-10-03 08:11 |
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4,932 |
by fede Wed, 2020-09-23 11:24 |
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How to estimate the effect of a mutation on the binding energy? by ltrabuco » Tue, 2011-02-15 08:02 |
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4,783 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Error when running Remodel with EnzDes constraint file to extend c-terminal by Jeffrey_Chen » Thu, 2017-01-19 06:20 |
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3,659 |
by dfcoelho Tue, 2017-10-17 11:52 |
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Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-' by AG88 » Thu, 2011-11-03 01:25 |
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6,963 |
by weitzner Mon, 2014-04-21 06:47 |
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Error while reading in silent file by rweisse » Mon, 2015-04-20 00:31 |
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4,758 |
by rmoretti Thu, 2015-04-30 16:46 |
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conformational sampling of multi domain protein by dhirajks » Tue, 2017-07-04 11:20 |
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3,088 |
by jrporter Wed, 2017-07-05 06:30 |
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select_best_unique_ligand_poses - Ligand docking by subha » Thu, 2018-04-19 10:36 |
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2,654 |
by subha Fri, 2018-04-20 12:49 |
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antibody_numbering_converter cannot recognize the IMGT scheme by cryosky » Sat, 2020-02-29 23:12 |
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2,180 |
by jadolfbr Sun, 2020-03-01 14:54 |
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Re: Glutamic acid protonation by bharat_46010 » Fri, 2017-02-10 03:08 |
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3,955 |
by rmoretti Mon, 2017-02-20 08:09 |
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Positive scores with SymmDock in helical symmetry by kxiao » Tue, 2014-02-11 07:37 |
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4,055 |
by kxiao Thu, 2014-06-05 08:37 |
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mr_protocols with symmetry and ligand by jhm13c » Mon, 2017-02-27 11:59 |
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3,071 |
by jhm13c Thu, 2017-03-02 12:01 |
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When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error by Martin Floor » Thu, 2020-09-17 06:01 |
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1,862 |
by Martin Floor Tue, 2020-09-22 00:48 |
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FlexPepDocking with GDP-bound protein by LI » Sun, 2011-06-12 20:02 |
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4,236 |
by rmoretti Mon, 2014-04-21 06:47 |
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clustering in RosettaRemodel by cheyuk » Wed, 2014-04-23 03:09 |
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3,548 |
by rmoretti Mon, 2014-05-12 08:45 |
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relax protein with multi-conformer bound ligand by xfradera » Thu, 2023-01-12 09:10 |
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912 |
by xfradera Fri, 2023-01-13 09:07 |
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Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file? by lanselibai » Sun, 2014-11-16 10:26 |
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3,280 |
by G Mustafa Thu, 2018-10-18 05:31 |
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How tu use Delta filter's relax_mover by pocin » Sun, 2017-02-19 05:21 |
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2,709 |
by rmoretti Wed, 2017-03-01 13:10 |
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Allow region of protein to move in a certain direction by sn » Wed, 2017-08-23 17:07 |
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2,680 |
by rmoretti Thu, 2017-08-24 11:00 |
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relax with resfile by gw » Fri, 2011-08-05 10:57 |
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5,476 |
by nannemdp Mon, 2014-04-21 06:47 |
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NCAA attached at two points by tsztain » Wed, 2021-06-16 15:20 |
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1,139 |
by matteoferla Sat, 2021-06-19 03:07 |
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Problem with symmetric docking by saxen » Fri, 2011-04-29 15:15 |
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3,605 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg monomer vs pmut scan by dave » Tue, 2014-03-04 10:18 |
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3,919 |
by smlewis Fri, 2014-03-07 13:02 |
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Can only relax one structure at a time by lah435 » Wed, 2012-12-12 01:55 |
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3,482 |
by smlewis Mon, 2014-04-21 06:47 |
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Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB" by brspurri » Fri, 2017-03-24 10:52 |
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3,132 |
by brspurri Fri, 2017-03-24 11:35 |
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protein protein interaction design by Negarsardar » Wed, 2019-05-15 06:13 |
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2,679 |
by ajasja Wed, 2019-05-15 15:40 |
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pmut_scan does not produce log file by fglaser » Wed, 2013-10-16 07:25 |
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3,802 |
by matteoferla Tue, 2018-10-30 02:54 |
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Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains by ahonegger » Tue, 2012-04-24 01:34 |
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3,735 |
by ahonegger Mon, 2014-04-21 06:47 |
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No Space by jrcf » Mon, 2016-01-11 16:18 |
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2,939 |
by jrcf Fri, 2016-02-12 16:42 |
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loopmodel thinks there are no residues in the pose by lah435 » Wed, 2013-03-27 02:46 |
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3,773 |
by rmoretti Mon, 2014-04-21 06:47 |
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Ligand dock analysis by sacch » Tue, 2012-05-22 01:20 |
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3,455 |
by glemmon Mon, 2014-04-21 06:47 |
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Negative Design by rbjacob » Thu, 2018-10-11 09:18 |
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2,288 |
by smlewis Mon, 2018-10-15 08:42 |
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How to preserve ACE/NME termini? by nitroamos » Tue, 2018-05-22 13:07 |
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2,983 |
by rmoretti Thu, 2018-06-28 12:44 |
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Discrepancy between the total pose energy and sum of per residue energies by vijayan » Tue, 2013-07-02 07:24 |
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3,990 |
by rmoretti Mon, 2014-04-21 06:48 |
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ddg_monomer: what is the theoretical solution condition for the scoring? by lanselibai » Sat, 2016-04-30 03:26 |
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3,305 |
by smlewis Mon, 2016-05-02 08:20 |
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Error encountered during Rosetta loop modeling by max » Tue, 2014-11-25 02:17 |
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3,250 |
by max Thu, 2014-11-27 02:56 |
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Loop modeling with constraints by agctomer » Sat, 2021-03-20 03:53 |
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1,298 |
by agctomer Thu, 2021-04-08 07:37 |
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Loop prediction by yzhou » Thu, 2013-07-18 14:24 |
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3,835 |
by jadolfbr Mon, 2014-04-21 06:48 |
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relax a protein with phosphorylated serine residue by zruan » Thu, 2018-02-01 09:18 |
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2,397 |
by rmoretti Tue, 2018-02-06 09:47 |
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Missing common atom definitions in constraints by ic3reyes » Sat, 2011-06-11 13:09 |
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4,598 |
by smlewis Mon, 2014-04-21 06:47 |
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sam.predict-2nd for make_fragments.pl script by sumukh21 » Thu, 2011-02-17 12:29 |
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4,267 |
by fukamitka Mon, 2014-04-21 06:47 |
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fragment_picker with fasta only by gw » Tue, 2011-11-15 13:20 |
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3,882 |
by gw Mon, 2014-04-21 06:47 |
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Relax both peptide and ligands by matteoferla » Thu, 2018-09-13 03:11 |
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2,080 |
by smlewis Fri, 2018-09-14 10:34 |
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Modeling of side-chains onto membrane ab initio cluster? by akfried » Thu, 2011-06-23 04:03 |
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3,555 |
by nkemjika Mon, 2014-04-21 06:47 |
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strange effect in: SymDock.linuxgccrelease by ast » Tue, 2013-06-11 11:05 |
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3,366 |
by ast Mon, 2014-04-21 06:48 |
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make fragment by zadie1118 » Thu, 2012-08-30 07:45 |
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4,602 |
by smlewis Mon, 2014-04-21 06:47 |
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New CSRosetta toolbox by sn » Mon, 2017-04-24 12:42 |
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2,306 |
by rmoretti Tue, 2017-04-25 06:41 |
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How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior ) by asbelx » Sat, 2019-06-08 00:07 |
3 |
1,972 |
by happycaapi Tue, 2021-06-29 15:35 |
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using Rosetta to compute pH dependent binding? by JuliusSu » Sun, 2014-06-15 20:28 |
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4,492 |
by rmoretti Tue, 2014-06-17 08:51 |
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proline patching problem by xun » Tue, 2012-01-03 11:15 |
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3,462 |
by xun Mon, 2014-04-21 06:47 |
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Using Rosetta Docking for nucleic acids by Adrien Guilhot » Thu, 2011-04-28 06:16 |
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4,553 |
by Adrien Guilhot Mon, 2014-04-21 06:47 |
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InterfaceAnalyzer problem by almeida » Mon, 2014-03-03 14:56 |
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4,330 |
by smlewis Fri, 2014-03-07 14:09 |
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auto_setup_metals flag with loop modeling application fails by beowulfey » Wed, 2015-06-10 07:44 |
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3,620 |
by beowulfey Tue, 2015-06-23 16:10 |
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RosettaScripts filter BuriedUnsatHbonds2 missing still by zdaw » Fri, 2020-12-11 12:39 |
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1,269 |
by zdaw Tue, 2020-12-15 15:38 |
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ligand_docking_error by Alison_Yajie » Mon, 2020-04-20 12:27 |
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1,696 |
by YuFei Sat, 2020-05-30 00:12 |
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remodel gives no output by coomteng@gmail.com » Tue, 2018-03-06 07:40 |
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2,546 |
by rmoretti Wed, 2018-03-07 08:44 |
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problem with fixed_membrane option of membrane abinitio by yescalona » Thu, 2013-01-17 15:42 |
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3,096 |
by smlewis Mon, 2014-04-21 06:47 |
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Model truncated proteins by BuddySphinx » Wed, 2018-12-12 10:32 |
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2,104 |
by smlewis Wed, 2018-12-12 16:51 |
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Running RosettaHoles2 by weehee » Wed, 2013-02-13 09:35 |
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3,190 |
by weehee Mon, 2014-04-21 06:47 |
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analysis of clustering by loris.moretti » Thu, 2012-04-19 02:52 |
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6,436 |
by rmoretti Mon, 2014-04-21 06:47 |
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Per residue scoring by chelsell » Mon, 2015-08-17 14:43 |
3 |
3,661 |
by rmoretti Wed, 2015-09-02 12:33 |
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RosettaCM input file for running on Stampede by smathersc » Wed, 2017-01-18 16:12 |
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2,672 |
by rmoretti Thu, 2017-02-02 09:02 |
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Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB by rlwoltz » Thu, 2019-01-24 19:43 |
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3,227 |
by bjharris Sun, 2020-08-23 14:03 |
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DockingProtocol by Soler » Fri, 2022-02-11 00:12 |
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1,001 |
by gezmi Tue, 2022-02-15 21:47 |
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ddg_monomer.mpi by gw » Thu, 2011-10-27 16:45 |
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3,635 |
by smlewis Mon, 2014-04-21 06:47 |
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revert_design_to_native app comparison to FavorNativeResidue mover by nwhoppe » Wed, 2016-06-29 14:35 |
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3,590 |
by rmoretti Tue, 2016-07-12 09:30 |
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The confussion about an example in tutorial in Rosetta Virtual Workshop 2020 by ldx022 » Tue, 2022-11-29 04:58 |
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3,443 |
by ldx022 Tue, 2022-11-29 08:38 |
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Problems with always_constrained_relax_script by wsgosal » Wed, 2013-05-29 04:39 |
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4,282 |
by rmoretti Mon, 2014-04-21 06:47 |
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High energies after loopmodel run by michki » Thu, 2014-05-08 05:14 |
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3,463 |
by rmoretti Mon, 2014-05-12 15:16 |
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xyzVector error in Enzyme design by ajmbarbosa » Tue, 2016-01-05 09:46 |
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3,679 |
by rmoretti Fri, 2016-06-17 10:36 |
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Docking membrane ions and water by jrcf » Tue, 2017-02-07 15:47 |
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2,711 |
by smlewis Wed, 2017-02-15 07:43 |
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RosettaDock 4.0 ambiguous ERROR by sam_dc » Fri, 2022-03-18 09:36 |
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985 |
by rmoretti Tue, 2022-03-22 09:10 |
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Comparative modeling of metalloproteins by ctqwong » Sun, 2020-07-12 13:51 |
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1,530 |
by ctqwong Mon, 2020-07-27 01:48 |
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parameterizing new residues by chiendarret » Fri, 2012-02-03 22:59 |
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6,960 |
by rmoretti Mon, 2014-04-21 06:47 |
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Relax is resulting in a Segmentation Fault by brspurri » Thu, 2017-08-24 18:46 |
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3,059 |
by brspurri Sat, 2017-08-26 07:08 |
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What is a rational minimal value for the "-nstruct" option by Sunyp_IM » Fri, 2020-05-22 01:28 |
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1,593 |
by nannemdp Sun, 2020-05-24 14:46 |
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partial ab initio modeling by fred » Wed, 2011-08-17 14:14 |
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3,702 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop design with length variation by jarod » Thu, 2016-06-16 19:54 |
3 |
3,320 |
by rmoretti Tue, 2016-07-12 09:41 |
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issues about cstfile in RosettaMatch by Nicole Deng » Fri, 2020-12-18 05:44 |
3 |
1,773 |
by He Xiao Sun, 2021-04-11 19:29 |
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Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease? by lanselibai » Thu, 2015-01-08 03:23 |
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3,140 |
by lanselibai Tue, 2015-01-13 14:25 |
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Behavior of nstruct by johnnytam100 » Wed, 2019-05-15 22:22 |
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2,434 |
by johnnytam100 Tue, 2019-05-21 20:48 |
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What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"? by lanselibai » Fri, 2014-10-17 06:06 |
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20,526 |
by rmoretti Fri, 2014-10-17 10:17 |
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RosettaCM by DmitriiN » Sun, 2017-01-22 17:52 |
3 |
2,489 |
by smlewis Mon, 2017-01-23 06:26 |
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Rosetta Ligand Ensemble by malfonsoprieto » Wed, 2021-05-26 10:21 |
3 |
1,362 |
by vizcarra Thu, 2021-08-26 10:16 |
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dihedral_between_bonded_children: atoms are not both my children! by pdbb » Fri, 2013-04-05 06:40 |
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2,888 |
by smlewis Mon, 2014-04-21 06:47 |
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Homodimer interface design by petrikigor » Fri, 2012-11-16 10:57 |
3 |
4,420 |
by rmoretti Mon, 2014-04-21 06:47 |
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Running snugdock was crashed by "segmentation fault" by Sunyp_IM » Mon, 2017-08-21 05:03 |
3 |
2,415 |
by rmoretti Tue, 2017-08-22 09:03 |
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relax and movemap by Alison_Yajie » Wed, 2020-05-20 21:27 |
3 |
1,662 |
by smlewis Thu, 2020-05-21 21:05 |
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Why is proline hydroxylated？ by kwonglynn » Tue, 2013-06-25 02:38 |
3 |
4,705 |
by rmoretti Mon, 2014-04-21 06:48 |
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ddG_monomer by cott1117 » Thu, 2014-06-12 09:53 |
3 |
4,328 |
by rmoretti Wed, 2014-07-02 16:55 |
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pdb2vall by JadAbbass » Mon, 2013-07-08 12:11 |
3 |
3,448 |
by rmoretti Mon, 2014-04-21 06:48 |
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FlexPepDock for protein containing multiple chains by Dimitrov » Mon, 2012-10-08 08:31 |
3 |
3,494 |
by smlewis Mon, 2014-04-21 06:47 |
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Error when running cluster by aloshbau » Wed, 2013-05-01 20:45 |
3 |
4,108 |
by rmoretti Mon, 2014-04-21 06:47 |
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cluster.mpi.linuxgccrelease failed by fred » Mon, 2014-02-24 12:11 |
3 |
7,456 |
by fred Thu, 2014-03-27 11:29 |
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Perform MPI relax with movemap files by sn » Sun, 2017-03-05 13:18 |
3 |
2,761 |
by sn Mon, 2017-03-06 10:03 |
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clean_pdb not working by Andre Serobian » Thu, 2020-07-23 04:48 |
3 |
1,766 |
by rmoretti Tue, 2020-07-28 08:24 |
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Filter based on ligand_is_touching by Swillard » Mon, 2017-09-11 19:00 |
3 |
2,432 |
by rmoretti Mon, 2018-11-12 14:35 |
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RNA modeling with step wise Monte Carlo error by szcshr123 » Mon, 2020-12-07 18:08 |
3 |
1,280 |
by everyday847 Wed, 2020-12-09 21:46 |
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HBNet and RosettaScripts by protos_heis » Tue, 2014-08-05 06:05 |
3 |
3,666 |
by protos_heis Tue, 2014-08-05 12:47 |
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Can't append or prepend with pepspec by danzinho » Tue, 2015-03-31 01:19 |
3 |
3,380 |
by dswhit Tue, 2015-04-21 10:14 |
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