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Rosetta 3 - Applications
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Changing scoring function for fixbb protocol by mdyini » Sat, 2012-07-07 18:43 |
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4,046 |
by mdyini Mon, 2014-04-21 06:47 |
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select_best_unique_ligand_poses - Ligand docking by subha » Thu, 2018-04-19 10:36 |
4 |
3,117 |
by subha Fri, 2018-04-20 12:49 |
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antibody_numbering_converter cannot recognize the IMGT scheme by cryosky » Sat, 2020-02-29 23:12 |
4 |
2,739 |
by jadolfbr Sun, 2020-03-01 14:54 |
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Error when running Remodel with EnzDes constraint file to extend c-terminal by Jeffrey_Chen » Thu, 2017-01-19 06:20 |
4 |
4,106 |
by dfcoelho Tue, 2017-10-17 11:52 |
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Re: Glutamic acid protonation by bharat_46010 » Fri, 2017-02-10 03:08 |
4 |
4,522 |
by rmoretti Mon, 2017-02-20 08:09 |
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Positive scores with SymmDock in helical symmetry by kxiao » Tue, 2014-02-11 07:37 |
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4,487 |
by kxiao Thu, 2014-06-05 08:37 |
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mr_protocols with symmetry and ligand by jhm13c » Mon, 2017-02-27 11:59 |
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3,554 |
by jhm13c Thu, 2017-03-02 12:01 |
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flexpep docking problem-----How to do with phosphorylation peptide? by MajorID » Thu, 2011-06-02 00:37 |
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6,111 |
by rmoretti Mon, 2014-04-21 06:47 |
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When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error by Martin Floor » Thu, 2020-09-17 06:01 |
4 |
2,506 |
by Martin Floor Tue, 2020-09-22 00:48 |
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Pepspec Errors running 3.4 by rrphenix » Tue, 2013-05-28 12:08 |
4 |
4,205 |
by rmoretti Mon, 2014-04-21 06:47 |
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ddg_monomer: what is the meaning of "total score" and "score"? by lanselibai » Tue, 2015-01-13 14:49 |
4 |
6,585 |
by rmoretti Thu, 2015-04-16 11:23 |
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RosettaAntibody3 is failing with "Error: no input sequences were specified!" by brspurri » Sun, 2020-08-16 16:16 |
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2,479 |
by brspurri Tue, 2020-08-18 09:57 |
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Multiple ligands in enzyme design application by yogeshkd » Mon, 2013-02-11 10:13 |
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5,128 |
by yogeshkd Mon, 2014-04-21 06:47 |
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relax protein with multi-conformer bound ligand by xfradera » Thu, 2023-01-12 09:10 |
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3,018 |
by rmoretti Mon, 2023-02-06 15:06 |
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ddg_monomer and membrane proteins by afmo » Tue, 2014-05-20 02:37 |
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5,517 |
by afmo Thu, 2014-05-22 01:19 |
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simple_cycpep_predict - Design mode - The base name "ARG" was added more than once by almeida85 » Thu, 2022-08-04 02:57 |
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1,339 |
by almeida85 Thu, 2022-08-11 00:58 |
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side chain repacking error by malkeet.singh » Thu, 2017-12-07 04:49 |
4 |
3,761 |
by smlewis Wed, 2017-12-13 09:54 |
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Any backrub expert? by johnnytam100 » Fri, 2019-03-01 01:58 |
4 |
3,281 |
by johnnytam100 Sun, 2019-03-03 23:42 |
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Rosetta antibody- modeling in the presense of an antigen by agctomer » Mon, 2021-02-01 03:19 |
4 |
1,879 |
by nannemdp Wed, 2021-02-03 08:52 |
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Allow region of protein to move in a certain direction by sn » Wed, 2017-08-23 17:07 |
3 |
3,076 |
by rmoretti Thu, 2017-08-24 11:00 |
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partial ab initio modeling by fred » Wed, 2011-08-17 14:14 |
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4,044 |
by smlewis Mon, 2014-04-21 06:47 |
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Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file? by lanselibai » Sun, 2014-11-16 10:26 |
3 |
3,649 |
by G Mustafa Thu, 2018-10-18 05:31 |
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How tu use Delta filter's relax_mover by pocin » Sun, 2017-02-19 05:21 |
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3,096 |
by rmoretti Wed, 2017-03-01 13:10 |
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ddg monomer vs pmut scan by dave » Tue, 2014-03-04 10:18 |
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4,292 |
by smlewis Fri, 2014-03-07 13:02 |
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Can only relax one structure at a time by lah435 » Wed, 2012-12-12 01:55 |
3 |
3,793 |
by smlewis Mon, 2014-04-21 06:47 |
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NCAA attached at two points by tsztain » Wed, 2021-06-16 15:20 |
3 |
1,571 |
by matteoferla Sat, 2021-06-19 03:07 |
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Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB" by brspurri » Fri, 2017-03-24 10:52 |
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3,542 |
by brspurri Fri, 2017-03-24 11:35 |
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protein protein interaction design by Negarsardar » Wed, 2019-05-15 06:13 |
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3,285 |
by ajasja Wed, 2019-05-15 15:40 |
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pmut_scan does not produce log file by fglaser » Wed, 2013-10-16 07:25 |
3 |
4,229 |
by matteoferla Tue, 2018-10-30 02:54 |
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No Space by jrcf » Mon, 2016-01-11 16:18 |
3 |
3,323 |
by jrcf Fri, 2016-02-12 16:42 |
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Negative Design by rbjacob » Thu, 2018-10-11 09:18 |
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2,723 |
by smlewis Mon, 2018-10-15 08:42 |
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How to preserve ACE/NME termini? by nitroamos » Tue, 2018-05-22 13:07 |
3 |
3,521 |
by rmoretti Thu, 2018-06-28 12:44 |
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loopmodel thinks there are no residues in the pose by lah435 » Wed, 2013-03-27 02:46 |
3 |
4,070 |
by rmoretti Mon, 2014-04-21 06:47 |
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Error encountered during Rosetta loop modeling by max » Tue, 2014-11-25 02:17 |
3 |
3,622 |
by max Thu, 2014-11-27 02:56 |
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Loop modeling with constraints by agctomer » Sat, 2021-03-20 03:53 |
3 |
1,713 |
by agctomer Thu, 2021-04-08 07:37 |
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Discrepancy between the total pose energy and sum of per residue energies by vijayan » Tue, 2013-07-02 07:24 |
3 |
4,359 |
by rmoretti Mon, 2014-04-21 06:48 |
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ddg_monomer: what is the theoretical solution condition for the scoring? by lanselibai » Sat, 2016-04-30 03:26 |
3 |
3,698 |
by smlewis Mon, 2016-05-02 08:20 |
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Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains by ahonegger » Tue, 2012-04-24 01:34 |
3 |
4,054 |
by ahonegger Mon, 2014-04-21 06:47 |
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Ligand dock analysis by sacch » Tue, 2012-05-22 01:20 |
3 |
3,754 |
by glemmon Mon, 2014-04-21 06:47 |
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relax a protein with phosphorylated serine residue by zruan » Thu, 2018-02-01 09:18 |
3 |
2,772 |
by rmoretti Tue, 2018-02-06 09:47 |
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Loop prediction by yzhou » Thu, 2013-07-18 14:24 |
3 |
4,171 |
by jadolfbr Mon, 2014-04-21 06:48 |
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score to use for picking top docking solutions? by sudhar » Tue, 2011-06-14 06:47 |
3 |
5,684 |
by weitzner Mon, 2014-04-21 06:47 |
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Relax both peptide and ligands by matteoferla » Thu, 2018-09-13 03:11 |
3 |
2,488 |
by smlewis Fri, 2018-09-14 10:34 |
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strange effect in: SymDock.linuxgccrelease by ast » Tue, 2013-06-11 11:05 |
3 |
3,699 |
by ast Mon, 2014-04-21 06:48 |
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New CSRosetta toolbox by sn » Mon, 2017-04-24 12:42 |
3 |
2,704 |
by rmoretti Tue, 2017-04-25 06:41 |
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How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior ) by asbelx » Sat, 2019-06-08 00:07 |
3 |
2,388 |
by happycaapi Tue, 2021-06-29 15:35 |
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RosettaAntibody by mpendleton » Mon, 2011-04-04 10:27 |
3 |
4,835 |
by jianqing Mon, 2014-04-21 06:47 |
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ERROR: no fragment to compute secondary structure by byin » Sun, 2011-08-07 23:55 |
3 |
4,380 |
by smlewis Mon, 2014-04-21 06:47 |
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using Rosetta to compute pH dependent binding? by JuliusSu » Sun, 2014-06-15 20:28 |
3 |
5,167 |
by rmoretti Tue, 2014-06-17 08:51 |
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Are catalytic residues mutatable? by uka147 » Thu, 2023-10-26 03:49 |
3 |
287 |
by uka147 Mon, 2023-10-30 01:53 |
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InterfaceAnalyzer problem by almeida » Mon, 2014-03-03 14:56 |
3 |
4,764 |
by smlewis Fri, 2014-03-07 14:09 |
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auto_setup_metals flag with loop modeling application fails by beowulfey » Wed, 2015-06-10 07:44 |
3 |
4,030 |
by beowulfey Tue, 2015-06-23 16:10 |
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RosettaScripts filter BuriedUnsatHbonds2 missing still by zdaw » Fri, 2020-12-11 12:39 |
3 |
1,640 |
by zdaw Tue, 2020-12-15 15:38 |
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Abrelax - Dunbrack02.lib.bin missing by omirus » Sun, 2011-09-18 06:30 |
3 |
4,776 |
by smlewis Mon, 2014-04-21 06:47 |
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make fragment by zadie1118 » Thu, 2012-08-30 07:45 |
3 |
5,015 |
by smlewis Mon, 2014-04-21 06:47 |
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remodel gives no output by coomteng@gmail.com » Tue, 2018-03-06 07:40 |
3 |
2,986 |
by rmoretti Wed, 2018-03-07 08:44 |
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proline patching problem by xun » Tue, 2012-01-03 11:15 |
3 |
3,808 |
by xun Mon, 2014-04-21 06:47 |
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problem with fixed_membrane option of membrane abinitio by yescalona » Thu, 2013-01-17 15:42 |
3 |
3,402 |
by smlewis Mon, 2014-04-21 06:47 |
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Model truncated proteins by BuddySphinx » Wed, 2018-12-12 10:32 |
3 |
2,629 |
by smlewis Wed, 2018-12-12 16:51 |
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ligand_docking_error by Alison_Yajie » Mon, 2020-04-20 12:27 |
3 |
2,068 |
by YuFei Sat, 2020-05-30 00:12 |
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The confussion about an example in tutorial in Rosetta Virtual Workshop 2020 by ldx022 » Tue, 2022-11-29 04:58 |
3 |
4,062 |
by ldx022 Tue, 2022-11-29 08:38 |
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Problems with always_constrained_relax_script by wsgosal » Wed, 2013-05-29 04:39 |
3 |
4,607 |
by rmoretti Mon, 2014-04-21 06:47 |
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High energies after loopmodel run by michki » Thu, 2014-05-08 05:14 |
3 |
3,804 |
by rmoretti Mon, 2014-05-12 15:16 |
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xyzVector error in Enzyme design by ajmbarbosa » Tue, 2016-01-05 09:46 |
3 |
4,086 |
by rmoretti Fri, 2016-06-17 10:36 |
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Running RosettaHoles2 by weehee » Wed, 2013-02-13 09:35 |
3 |
3,545 |
by weehee Mon, 2014-04-21 06:47 |
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Per residue scoring by chelsell » Mon, 2015-08-17 14:43 |
3 |
4,017 |
by rmoretti Wed, 2015-09-02 12:33 |
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RosettaCM input file for running on Stampede by smathersc » Wed, 2017-01-18 16:12 |
3 |
3,036 |
by rmoretti Thu, 2017-02-02 09:02 |
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Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB by rlwoltz » Thu, 2019-01-24 19:43 |
3 |
3,933 |
by bjharris Sun, 2020-08-23 14:03 |
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DockingProtocol by Soler » Fri, 2022-02-11 00:12 |
3 |
1,656 |
by gezmi Tue, 2022-02-15 21:47 |
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revert_design_to_native app comparison to FavorNativeResidue mover by nwhoppe » Wed, 2016-06-29 14:35 |
3 |
3,982 |
by rmoretti Tue, 2016-07-12 09:30 |
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Docking membrane ions and water by jrcf » Tue, 2017-02-07 15:47 |
3 |
3,087 |
by smlewis Wed, 2017-02-15 07:43 |
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RosettaDock 4.0 ambiguous ERROR by sam_dc » Fri, 2022-03-18 09:36 |
3 |
1,780 |
by rmoretti Tue, 2022-03-22 09:10 |
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Comparative modeling of metalloproteins by ctqwong » Sun, 2020-07-12 13:51 |
3 |
1,921 |
by ctqwong Mon, 2020-07-27 01:48 |
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Relax is resulting in a Segmentation Fault by brspurri » Thu, 2017-08-24 18:46 |
3 |
3,550 |
by brspurri Sat, 2017-08-26 07:08 |
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What is a rational minimal value for the "-nstruct" option by Sunyp_IM » Fri, 2020-05-22 01:28 |
3 |
1,992 |
by nannemdp Sun, 2020-05-24 14:46 |
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analysis of clustering by loris.moretti » Thu, 2012-04-19 02:52 |
3 |
6,893 |
by rmoretti Mon, 2014-04-21 06:47 |
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issues about cstfile in RosettaMatch by Nicole Deng » Fri, 2020-12-18 05:44 |
3 |
2,419 |
by He Xiao Sun, 2021-04-11 19:29 |
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Loop design with length variation by jarod » Thu, 2016-06-16 19:54 |
3 |
3,730 |
by rmoretti Tue, 2016-07-12 09:41 |
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FlexPepDocking with GDP-bound protein by LI » Sun, 2011-06-12 20:02 |
3 |
4,599 |
by rmoretti Mon, 2014-04-21 06:47 |
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Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease? by lanselibai » Thu, 2015-01-08 03:23 |
3 |
3,500 |
by lanselibai Tue, 2015-01-13 14:25 |
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Behavior of nstruct by johnnytam100 » Wed, 2019-05-15 22:22 |
3 |
2,921 |
by johnnytam100 Tue, 2019-05-21 20:48 |
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parameterizing new residues by chiendarret » Fri, 2012-02-03 22:59 |
3 |
7,481 |
by rmoretti Mon, 2014-04-21 06:47 |
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What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"? by lanselibai » Fri, 2014-10-17 06:06 |
3 |
20,888 |
by rmoretti Fri, 2014-10-17 10:17 |
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RosettaCM by DmitriiN » Sun, 2017-01-22 17:52 |
3 |
2,875 |
by smlewis Mon, 2017-01-23 06:26 |
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Homodimer interface design by petrikigor » Fri, 2012-11-16 10:57 |
3 |
4,848 |
by rmoretti Mon, 2014-04-21 06:47 |
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Running snugdock was crashed by "segmentation fault" by Sunyp_IM » Mon, 2017-08-21 05:03 |
3 |
2,799 |
by rmoretti Tue, 2017-08-22 09:03 |
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relax and movemap by Alison_Yajie » Wed, 2020-05-20 21:27 |
3 |
2,088 |
by smlewis Thu, 2020-05-21 21:05 |
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relax with resfile by gw » Fri, 2011-08-05 10:57 |
3 |
5,956 |
by nannemdp Mon, 2014-04-21 06:47 |
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Why is proline hydroxylated？ by kwonglynn » Tue, 2013-06-25 02:38 |
3 |
5,060 |
by rmoretti Mon, 2014-04-21 06:48 |
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ddG_monomer by cott1117 » Thu, 2014-06-12 09:53 |
3 |
4,857 |
by rmoretti Wed, 2014-07-02 16:55 |
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Rosetta Ligand Ensemble by malfonsoprieto » Wed, 2021-05-26 10:21 |
3 |
1,761 |
by vizcarra Thu, 2021-08-26 10:16 |
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dihedral_between_bonded_children: atoms are not both my children! by pdbb » Fri, 2013-04-05 06:40 |
3 |
3,194 |
by smlewis Mon, 2014-04-21 06:47 |
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Error when running cluster by aloshbau » Wed, 2013-05-01 20:45 |
3 |
4,474 |
by rmoretti Mon, 2014-04-21 06:47 |
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cluster.mpi.linuxgccrelease failed by fred » Mon, 2014-02-24 12:11 |
3 |
7,875 |
by fred Thu, 2014-03-27 11:29 |
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Perform MPI relax with movemap files by sn » Sun, 2017-03-05 13:18 |
3 |
3,217 |
by sn Mon, 2017-03-06 10:03 |
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clean_pdb not working by Andre Serobian » Thu, 2020-07-23 04:48 |
3 |
2,285 |
by rmoretti Tue, 2020-07-28 08:24 |
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Filter based on ligand_is_touching by Swillard » Mon, 2017-09-11 19:00 |
3 |
2,822 |
by rmoretti Mon, 2018-11-12 14:35 |
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RNA modeling with step wise Monte Carlo error by szcshr123 » Mon, 2020-12-07 18:08 |
3 |
1,700 |
by everyday847 Wed, 2020-12-09 21:46 |
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pdb2vall by JadAbbass » Mon, 2013-07-08 12:11 |
3 |
3,753 |
by rmoretti Mon, 2014-04-21 06:48 |
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Problem with symmetric docking by saxen » Fri, 2011-04-29 15:15 |
3 |
3,956 |
by smlewis Mon, 2014-04-21 06:47 |
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