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Rosetta 3 - Applications
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ligand_docking ligand preparation by Alison_Yajie » Thu, 2020-05-21 10:21 |
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1,435 |
by Alison_Yajie Wed, 2020-06-24 12:38 |
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Ligand docking with constraint by Alison_Yajie » Wed, 2020-06-24 12:34 |
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731 |
by Alison_Yajie Wed, 2020-06-24 12:34 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Fri, 2020-06-19 08:58 |
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1,508 |
by Kotimedidhi Mon, 2020-06-22 16:19 |
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How to select docked models by Sunyp_IM » Mon, 2020-06-22 00:50 |
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1,021 |
by ssrb Mon, 2020-06-22 13:12 |
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Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex by benhardy » Mon, 2020-06-15 09:33 |
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1,868 |
by benhardy Fri, 2020-06-19 07:55 |
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Residue selector by Alison_Yajie » Wed, 2020-06-17 19:57 |
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741 |
by Alison_Yajie Thu, 2020-06-18 09:47 |
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Constraint generator by Alison_Yajie » Wed, 2020-06-17 20:14 |
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1,038 |
by Alison_Yajie Wed, 2020-06-17 20:35 |
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metalloprotein ab initio with glutamic acid by inorgchem » Tue, 2020-06-16 20:45 |
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616 |
by inorgchem Tue, 2020-06-16 20:45 |
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RosettaCM: An internal error has occurred when "Running the Hybridize mover" by haom » Mon, 2020-06-15 05:56 |
4 |
2,111 |
by haom Tue, 2020-06-16 05:55 |
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The difference between the H1 regions of modeled camelid antibody and the crystal structure. by Sunyp_IM » Sun, 2020-06-07 02:34 |
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1,165 |
by nannemdp Sun, 2020-06-07 08:01 |
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The usage of antibody_H3.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 22:50 |
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1,685 |
by Sunyp_IM Thu, 2020-06-04 08:20 |
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"Residue 7 was disulfide bonded but had no partner" with antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-06-04 05:53 |
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750 |
by Sunyp_IM Thu, 2020-06-04 05:54 |
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RosettaAntibodyDesign: How can I run the protocol without allowing design? by brspurri » Tue, 2020-05-26 08:12 |
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2,570 |
by brspurri Wed, 2020-06-03 13:20 |
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AbinitioRelax detect_disulf_tolerance by aarono » Tue, 2020-06-02 00:13 |
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815 |
by aarono Tue, 2020-06-02 00:13 |
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ligand_docking_error by Alison_Yajie » Mon, 2020-04-20 12:27 |
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1,965 |
by YuFei Sat, 2020-05-30 00:12 |
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Problems with mpi version of antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 23:06 |
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952 |
by Sunyp_IM Thu, 2020-05-28 23:07 |
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mp_transform optimize with franklin2019 scoring by benhardy » Thu, 2020-05-28 08:35 |
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1,077 |
by benhardy Thu, 2020-05-28 08:45 |
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What is a rational minimal value for the "-nstruct" option by Sunyp_IM » Fri, 2020-05-22 01:28 |
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1,894 |
by nannemdp Sun, 2020-05-24 14:46 |
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cartesian_ddg crashes when the mutfile contains multiple mutations to non-canonical residues by ValentinaSora » Sun, 2020-05-24 12:32 |
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1,173 |
by ValentinaSora Sun, 2020-05-24 12:32 |
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relax and movemap by Alison_Yajie » Wed, 2020-05-20 21:27 |
3 |
1,971 |
by smlewis Thu, 2020-05-21 21:05 |
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Changing rosetta scoring to favour less hydrophobic areas by daniloboskovic » Thu, 2020-05-21 03:03 |
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1,059 |
by vmulligan Thu, 2020-05-21 18:33 |
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ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-05-21 09:42 |
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826 |
by Alison_Yajie Thu, 2020-05-21 09:42 |
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Modelling temperature dependent RNA structures by tuleshwori » Tue, 2020-05-19 01:16 |
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1,496 |
by tuleshwori Thu, 2020-05-21 02:08 |
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Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1 by cm21 » Wed, 2020-05-20 08:55 |
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1,539 |
by cm21 Wed, 2020-05-20 11:22 |
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Rna Denovo by helderveras » Wed, 2020-05-06 08:40 |
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2,656 |
by everyday847 Wed, 2020-05-20 08:52 |
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Side-chain grafting at the fixed protein and position by Kazu » Wed, 2020-05-20 08:49 |
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697 |
by Kazu Wed, 2020-05-20 08:49 |
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Transmembrane helix fold-and-dock? by sarah_b » Tue, 2020-05-12 02:09 |
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2,017 |
by jkleman Tue, 2020-05-19 15:02 |
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protein relax by Alison_Yajie » Tue, 2020-05-19 08:29 |
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775 |
by Alison_Yajie Tue, 2020-05-19 08:29 |
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RosettaAntibodyDesign] How can I use run_relax and run_snugdock as part of my command and workflow? by brspurri » Thu, 2020-05-14 11:15 |
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1,457 |
by brspurri Thu, 2020-05-14 12:24 |
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Flex_ddG crashes when attempting to move 2 chains (e.g. chains_to_move = A,C) by jcampecino » Wed, 2020-05-13 12:22 |
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918 |
by jcampecino Wed, 2020-05-13 12:22 |
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How to run partial_thread in RosettaCM when residure are more than 9999? by lanselibai » Mon, 2020-05-11 22:43 |
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1,902 |
by lanselibai Tue, 2020-05-12 20:25 |
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How to concatenate the 3-mer and 9-mer files for RosettaCM? by lanselibai » Fri, 2020-05-08 05:38 |
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2,855 |
by danpf Tue, 2020-05-12 10:58 |
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Template/Input length mismatch error during RosettaCM by marinok » Mon, 2020-05-04 13:12 |
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2,373 |
by marinok Mon, 2020-05-11 12:48 |
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General question regarding ligand-docking by Alison_Yajie » Thu, 2020-05-07 09:48 |
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688 |
by Alison_Yajie Thu, 2020-05-07 09:48 |
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Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans? by ccottrell » Tue, 2020-05-05 20:30 |
5 |
2,566 |
by jadolfbr Wed, 2020-05-06 11:37 |
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Ligand docking at specific orientation by ShiranBZ » Mon, 2020-04-13 20:46 |
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1,073 |
by matteoferla Mon, 2020-05-04 02:02 |
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can remodel add loops in one chain in multichain PDB structure? by ksteczk » Fri, 2020-05-01 06:26 |
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1,268 |
by matteoferla Mon, 2020-05-04 01:43 |
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BUG REPORT: Remodel Resfile ERROR: LEU was added more than once? by daniloboskovic » Wed, 2020-04-29 01:17 |
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1,561 |
by daniloboskovic Wed, 2020-04-29 05:51 |
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RosettaDesign error with Option file open failed by xingqing326 » Sun, 2020-04-19 01:56 |
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3,423 |
by xingqing326 Tue, 2020-04-21 19:11 |
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DNA-protein docking by ksteczk » Sat, 2020-04-11 11:23 |
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1,198 |
by ksteczk Sat, 2020-04-11 11:23 |
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Use membrane or non-membrane weights in RosettaCM for a hexon in virus capsid? by lanselibai » Sat, 2020-04-11 02:10 |
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859 |
by lanselibai Sat, 2020-04-11 02:10 |
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Rosetta remodel - including an RNA ligand by daniloboskovic » Fri, 2020-04-10 04:24 |
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869 |
by daniloboskovic Fri, 2020-04-10 04:24 |
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Error with the mpi version of simple_cycpep_predict by Florent Langenfeld » Wed, 2020-02-05 05:16 |
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2,808 |
by vmulligan Fri, 2020-04-10 02:54 |
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What means "[ ERROR ] TIME_STAMP: AbrelaxMover: finished ...NO_BATCH S_0001." by Corvin » Thu, 2020-04-02 00:16 |
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880 |
by Corvin Thu, 2020-04-02 00:16 |
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Docking of multichain oligomers by sdh_h » Wed, 2020-03-25 12:43 |
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934 |
by sdh_h Wed, 2020-03-25 12:43 |
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Any progress on getting intermediate structures during a design? by broomsday » Mon, 2020-03-16 06:46 |
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1,648 |
by vmulligan Tue, 2020-03-17 11:35 |
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application for affinity optimization by wentlewi » Fri, 2020-03-13 03:24 |
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879 |
by wentlewi Fri, 2020-03-13 03:24 |
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Is native.pdb necess for fragment_picker？ by ylwang » Thu, 2020-03-12 00:57 |
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1,661 |
by ylwang Thu, 2020-03-12 20:42 |
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"sparks failed" error when running "make_fragments.pl"? by Danielsebas » Tue, 2019-09-03 03:43 |
6 |
3,606 |
by Jacob_Verburgt Tue, 2020-03-10 14:39 |
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score is 0 in the output? - RosettaScripts by chrisHKL » Thu, 2020-03-05 09:33 |
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847 |
by chrisHKL Thu, 2020-03-05 12:58 |
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RosettaScript Segmentation Fault (crash log attached) by chrisHKL » Thu, 2020-03-05 07:21 |
2 |
2,049 |
by chrisHKL Thu, 2020-03-05 09:11 |
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std::bad_alloc error after changing .xml script? by chrisHKL » Wed, 2020-03-04 11:44 |
10 |
4,817 |
by jadolfbr Thu, 2020-03-05 07:02 |
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nstruct vs. trials? by chrisHKL » Mon, 2020-03-02 13:22 |
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1,497 |
by chrisHKL Wed, 2020-03-04 10:49 |
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Comparative Modeling Templates for Protein with Multiple Domains by Morrian_Lynn » Wed, 2020-03-04 10:42 |
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777 |
by Morrian_Lynn Wed, 2020-03-04 10:42 |
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Ddg filter threshold value? by chrisHKL » Fri, 2020-02-28 15:01 |
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1,113 |
by rmoretti Wed, 2020-03-04 09:56 |
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Imitating induced fit protocol in SymDock2 without any symmetry constraints by chenna » Fri, 2020-02-14 01:35 |
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1,720 |
by chenna Wed, 2020-03-04 03:24 |
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Filter for fixed-bb design using RosettaScript? by chrisHKL » Fri, 2020-02-28 19:47 |
4 |
2,198 |
by vmulligan Mon, 2020-03-02 13:40 |
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antibody_numbering_converter cannot recognize the IMGT scheme by cryosky » Sat, 2020-02-29 23:12 |
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2,621 |
by jadolfbr Sun, 2020-03-01 14:54 |
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What is interface_cutoff_distance? And why did my residues outside this value get designed? by chrisHKL » Fri, 2020-02-28 14:52 |
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853 |
by chrisHKL Fri, 2020-02-28 14:52 |
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remodel ERROR: unrecognized mm_atom_type_name RGU by daniloboskovic » Sat, 2020-02-22 11:55 |
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1,293 |
by daniloboskovic Tue, 2020-02-25 08:28 |
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Rosetta scripts crash in CM workflow by jlburkhead » Tue, 2019-12-03 22:55 |
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1,450 |
by danpf Fri, 2020-02-21 18:37 |
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Options "-out:prefix" didn't work by maruhuang » Tue, 2019-09-10 05:42 |
4 |
2,484 |
by danpf Fri, 2020-02-21 18:32 |
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Protein-Protein Docking or Comparative Modeling by Morrian_Lynn » Wed, 2020-01-29 19:01 |
1 |
1,215 |
by danpf Fri, 2020-02-21 18:23 |
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How can I model ligands in comparative modeling by Morrian_Lynn » Thu, 2020-02-20 09:57 |
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1,119 |
by danpf Fri, 2020-02-21 17:05 |
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Docking to TM protein plus lipid bilayer by renedominik » Tue, 2019-03-12 06:58 |
3 |
2,878 |
by renedominik Tue, 2020-02-18 01:36 |
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get an increased energy after energy minimization when using different score functions for repacking and energy minimization by xinmiaohe » Fri, 2020-02-07 11:59 |
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1,221 |
by xinmiaohe Fri, 2020-02-07 13:52 |
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error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease by xinmiaohe » Thu, 2020-01-30 22:09 |
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1,809 |
by xinmiaohe Fri, 2020-01-31 08:23 |
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Error during single state design by sujigeorge1979 » Sat, 2020-01-18 00:37 |
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4,462 |
by rmoretti Thu, 2020-01-30 15:42 |
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fixing sequence during grafting in antibody_designer by COM » Fri, 2020-01-24 11:38 |
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1,227 |
by jadolfbr Tue, 2020-01-28 09:13 |
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appropriate sampling for protein docking to a multi chain assembly by SWM » Fri, 2020-01-24 11:22 |
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728 |
by SWM Fri, 2020-01-24 11:22 |
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Limit on backbone movement in relax? by SWM » Fri, 2020-01-24 07:35 |
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822 |
by SWM Fri, 2020-01-24 07:35 |
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docking with capping groups by xavierfradera » Sun, 2018-11-04 16:17 |
1 |
1,398 |
by maral.adeli-kou... Wed, 2020-01-22 12:41 |
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Centroid mode minimization by Martin Floor » Tue, 2020-01-21 07:34 |
2 |
1,757 |
by Martin Floor Tue, 2020-01-21 11:15 |
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How to freeze ligand during FastRelax? by dnamkr » Thu, 2020-01-02 14:53 |
1 |
1,403 |
by aloshbau Fri, 2020-01-10 16:48 |
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cartfrag_overlap error while running hybridize protocol by sn » Thu, 2017-12-21 10:24 |
2 |
2,028 |
by dnamkr Mon, 2019-12-30 11:43 |
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Can remodel really handle multiple insertions in one simulation? by lanselibai » Sat, 2019-12-28 12:51 |
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771 |
by lanselibai Sat, 2019-12-28 12:51 |
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Remodel: the pose does not have residue with chain=H, PDBnum=114 by lanselibai » Wed, 2019-12-25 13:35 |
1 |
1,925 |
by lanselibai Fri, 2019-12-27 09:38 |
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RosettaCM hybridize mover error after fragment picking by amorin » Thu, 2018-09-06 11:03 |
2 |
2,173 |
by dnamkr Thu, 2019-12-26 10:22 |
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Error Implementing Match Style Constraints by pwging13 » Thu, 2019-12-19 09:53 |
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883 |
by pwging13 Thu, 2019-12-19 09:53 |
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using DARC in rosetta by syntekabio2019 » Thu, 2019-12-12 01:27 |
0 |
862 |
by syntekabio2019 Thu, 2019-12-12 01:27 |
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using piper-flexpepdock by syntekabio2019 » Thu, 2019-12-12 01:22 |
0 |
1,119 |
by syntekabio2019 Thu, 2019-12-12 01:22 |
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Docking the border segments of coiled coils in parallel orientation by Corvin » Mon, 2019-12-02 02:00 |
0 |
872 |
by Corvin Mon, 2019-12-02 02:00 |
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Issue with Rosetta LinkResidues Script by adityapadhi » Wed, 2019-11-20 22:00 |
1 |
1,231 |
by JackMaguire Fri, 2019-11-22 13:45 |
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running in MPI mode and multiple scores per output PDB file? by dantimatter » Wed, 2019-10-30 09:42 |
7 |
4,554 |
by dantimatter Wed, 2019-11-06 09:51 |
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Alanine Scanning for 1 Protein (no interface) by mags33 » Fri, 2019-10-25 10:08 |
2 |
2,123 |
by mags33 Wed, 2019-11-06 09:35 |
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GrowLigand by allan.ferrari » Sat, 2019-10-19 05:32 |
2 |
1,837 |
by allan.ferrari Tue, 2019-11-05 16:52 |
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Warnings during relax by cossio » Thu, 2018-10-11 14:42 |
2 |
2,934 |
by rmoretti Mon, 2019-11-04 13:56 |
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Symmetry mode in Remodel for N-terminal extension by yvonne.chan2 » Mon, 2019-11-04 13:41 |
0 |
1,107 |
by yvonne.chan2 Mon, 2019-11-04 13:41 |
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cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else? by dantimatter » Wed, 2019-10-16 14:59 |
5 |
2,953 |
by dantimatter Wed, 2019-10-30 09:43 |
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An error with score app by Genta » Tue, 2019-10-29 18:46 |
0 |
1,271 |
by Genta Tue, 2019-10-29 18:46 |
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antibody protocol fails by hamedkhakzad » Mon, 2019-08-19 07:43 |
1 |
1,283 |
by smlewis Tue, 2019-10-22 09:45 |
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change number of output pose files written out (default=50) in ligand docking XML script by hdelrisco » Fri, 2019-10-18 13:50 |
2 |
1,603 |
by hdelrisco Fri, 2019-10-18 17:16 |
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denovo modelling on a virus-coat protein dimer by aseem121 » Wed, 2019-10-16 06:55 |
1 |
1,299 |
by danpf Wed, 2019-10-16 13:03 |
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Make error during installation of updated ncbi-blast-2.9.0+-src plus error with nr-database by Corvin » Tue, 2019-10-01 02:04 |
6 |
5,636 |
by Corvin Tue, 2019-10-15 01:12 |
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"install_dependencies.pl" script: an optimization of HDD space during nr-pfilt data extracting and formatting stage by Corvin » Thu, 2019-10-10 02:20 |
1 |
1,328 |
by danpf Thu, 2019-10-10 09:55 |
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"Make_fragments.pl" can't connect to dependencies links by Corvin » Wed, 2019-09-04 23:54 |
2 |
1,991 |
by Corvin Thu, 2019-10-10 01:12 |
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Segment File Gen - no ouput by CATarr » Wed, 2019-10-09 19:05 |
0 |
803 |
by CATarr Wed, 2019-10-09 19:05 |
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how to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:40 |
5 |
4,556 |
by xinmiaohe Fri, 2019-10-04 08:54 |
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Energy function and iteration script files by michelleqyh » Fri, 2019-09-27 09:06 |
1 |
1,139 |
by smlewis Fri, 2019-09-27 11:54 |
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Structure prediction using true distance and angle constraint by maruhuang » Wed, 2019-08-21 02:29 |
4 |
2,270 |
by maruhuang Thu, 2019-09-26 18:52 |
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