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Rosetta 3 - Applications

Topic / Topic startersort descending Replies Views Last post
Normal topic Energy function and iteration script files
by michelleqyh » Fri, 2019-09-27 09:06
1
1,266 by smlewis
Fri, 2019-09-27 11:54
Normal topic Ensemble docking causes segmentation fault 11
by David Weis » Mon, 2017-03-06 14:30
2
2,906 by David Weis
Mon, 2017-03-13 06:40
Normal topic Ensemble Docking in Rosetta3.5?
by protos_heis » Fri, 2015-05-22 06:42
7
8,488 by protos_heis
Mon, 2015-06-08 07:00
Normal topic Enzdes constraint file not defined correctly
by eyong123 » Fri, 2015-03-27 07:16
3
3,806 by rmoretti
Thu, 2015-04-16 10:38
Normal topic Enzdes score file discrepancy between generated pdb and scores.out
by eyong123 » Wed, 2015-03-25 08:52
6
7,249 by eyong123
Mon, 2015-06-29 04:44
Normal topic Enzdes scorefile lost, can I recreate it
by eyong123 » Wed, 2015-04-15 05:55
2
2,715 by eyong123
Wed, 2015-04-22 11:33
Normal topic Enzdes: increase weight of energy term for steric clashes with ligand
by eyong123 » Wed, 2015-03-25 09:12
5
6,043 by rmoretti
Fri, 2015-04-24 12:02
Normal topic Enzyme Design - Score File
by nwhoppe » Thu, 2016-04-07 15:11
1
2,155 by rmoretti
Fri, 2016-04-08 07:39
Normal topic enzyme design and output_matchres_only
by petrikigor » Wed, 2012-10-24 18:45
6
5,255 by petrikigor
Mon, 2014-04-21 06:47
Normal topic Enzyme Design FlexBB Protocol Bug: DNA/RNA handling
by kettner » Fri, 2019-06-14 14:16
1
1,897 by rmoretti
Mon, 2019-06-24 13:46
Normal topic Enzyme Design Not Editing Structure
by liuwenxi » Wed, 2022-05-18 10:12
0
868 by liuwenxi
Wed, 2022-05-18 10:12
Normal topic Enzyme design output silent file and score file
by deltag » Fri, 2012-09-28 13:07
1
2,387 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Enzyme Design with additional covalent backbone bonds
by mwfranklin » Wed, 2016-08-03 10:23
1
2,495 by rmoretti
Mon, 2016-09-05 11:29
Normal topic Enzyme design with variable CST blocks possible?
by petrikigor » Thu, 2011-10-06 11:24
6
7,159 by petrikigor
Mon, 2014-04-21 06:47
Normal topic Error about rifdocking step 12
by ng98 » Mon, 2024-01-08 16:27
3
305 by ng98
Tue, 2024-01-09 23:42
Normal topic Error about rifdocking step 15
by ng98 » Sun, 2024-01-21 16:30
4
284 by ng98
Tue, 2024-01-23 17:01
Normal topic Error during single state design
by sujigeorge1979 » Sat, 2020-01-18 00:37
5
5,102 by rmoretti
Thu, 2020-01-30 15:42
Normal topic Error encountered during Rosetta loop modeling
by max » Tue, 2014-11-25 02:17
3
3,783 by max
Thu, 2014-11-27 02:56
Normal topic error extracting PDB from silent from AbinitioRelax with constraints
by attesor » Wed, 2017-06-14 04:15
2
2,348 by smlewis
Fri, 2017-06-16 07:35
Normal topic Error from clean_pdb.py
by code_Monkey » Mon, 2021-03-01 17:00
2
1,386 by code_Monkey
Thu, 2021-03-04 12:14
Normal topic Error Implementing Match Style Constraints
by pwging13 » Thu, 2019-12-19 09:53
0
989 by pwging13
Thu, 2019-12-19 09:53
Normal topic Error in using “loopmodel” for selective rebuilding
by sushreet » Mon, 2014-07-14 11:57
2
2,889 by sushreet
Tue, 2014-08-26 13:02
Normal topic Error in a new docking
by jrcf » Wed, 2017-05-17 19:26
2
4,430 by tingting
Tue, 2022-03-15 23:55
Normal topic Error in Loop modeling and other queries
by ashu4487 » Wed, 2016-05-11 18:23
1
2,232 by rmoretti
Fri, 2016-06-17 10:15
Normal topic error in loop remodeling
by syntekabio2019 » Wed, 2023-04-05 01:00
0
412 by syntekabio2019
Wed, 2023-04-05 01:01
Normal topic Error Interface analyser
by jrcf » Thu, 2017-06-22 12:55
1
1,859 by smlewis
Thu, 2017-06-22 13:31
Normal topic error mesages from RosettaDock
by AlanZhao » Mon, 2011-03-21 11:42
1
2,584 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error reading in/out glycosylated silent file - "Can't create a polymer bond after residue due to incompatible type"
by amorin » Mon, 2021-09-27 12:16
0
894 by amorin
Mon, 2021-09-27 12:16
Normal topic Error src/core/scoring/MembraneTopology.cc line: 139
by Daniel Hall » Thu, 2017-07-13 04:58
6
5,842 by rmoretti
Tue, 2017-07-18 09:00
Normal topic Error when running cluster
by aloshbau » Wed, 2013-05-01 20:45
3
4,634 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Error when running Remodel with EnzDes constraint file
by aloshbau » Wed, 2013-04-17 22:23
2
3,995 by aloshbau
Mon, 2014-04-21 06:47
Normal topic Error when running Remodel with EnzDes constraint file to extend c-terminal
by Jeffrey_Chen » Thu, 2017-01-19 06:20
4
4,307 by dfcoelho
Tue, 2017-10-17 11:52
Normal topic Error when trying docking protocol with different ligand
by scyphs » Wed, 2020-08-05 04:37
2
1,553 by scyphs
Mon, 2020-08-10 08:09
Normal topic Error when using Remodel on a protein with a chemically bound ligand
by Pappmaschee » Wed, 2020-12-16 09:23
0
1,105 by Pappmaschee
Wed, 2020-12-16 09:23
Normal topic Error while reading in silent file
by rweisse » Mon, 2015-04-20 00:31
4
5,483 by rmoretti
Thu, 2015-04-30 16:46
Normal topic Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-'
by AG88 » Thu, 2011-11-03 01:25
4
7,663 by weitzner
Mon, 2014-04-21 06:47
Normal topic Error while running Enzyme Design
by saxen » Fri, 2011-10-21 15:46
11
10,948 by akpole
Mon, 2014-04-21 06:47
Normal topic Error while running RosettaLigand
by Ryhon Wang » Tue, 2013-07-30 02:51
4
5,083 by Ryhon Wang
Mon, 2014-04-21 06:48
Normal topic Error with -patch_selectors
by subha » Tue, 2017-06-06 14:40
4
3,723 by subha
Fri, 2017-06-09 15:42
Normal topic Error with docking_prepack_protocol while executing the tutorial "Docking Flexible Proteins"
by vitoralmeida1808 » Mon, 2023-11-06 09:43
0
187 by vitoralmeida1808
Mon, 2023-11-06 09:43
Normal topic Error with FlexPepDock
by aloshbau » Sat, 2013-08-10 11:51
1
2,684 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Error with Formatdb of legacy blast when running "install_dependencies.pl"?
by Danielsebas » Mon, 2019-09-16 09:30
2
1,797 by Danielsebas
Tue, 2019-09-17 01:03
Normal topic error with fragment_picker.linuxgccrelease
by jiongzhang » Tue, 2012-04-17 09:07
3
3,551 by smlewis
Mon, 2014-04-21 06:47
Hot topic Error with recognizing rotamer library atoms
by oerbilgin » Fri, 2011-11-04 15:23
19
28,677 by oerbilgin
Mon, 2014-04-21 06:47
Normal topic Error with RNA_denovo
by zmfowler » Thu, 2022-07-14 05:34
0
786 by zmfowler
Thu, 2022-07-14 05:34
Normal topic Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease
by bdzhh » Tue, 2019-09-17 17:02
1
1,459 by jadolfbr
Thu, 2019-09-19 08:53
Normal topic Error with RoseTTAFold
by sc19 » Thu, 2022-07-14 03:40
0
1,006 by sc19
Thu, 2022-07-14 03:40
Normal topic Error with SapScoreMetric (SimpleMetric sap_score not found in basic::datacache::DataMap)
by Seongsung » Fri, 2023-11-24 05:09
0
203 by Seongsung
Fri, 2023-11-24 13:14
Normal topic Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking
by Corvin » Wed, 2019-06-19 08:40
5
4,036 by rmoretti
Tue, 2019-07-09 10:13
Normal topic Error with the mpi version of simple_cycpep_predict
by Florent Langenfeld » Wed, 2020-02-05 05:16
5
3,160 by vmulligan
Fri, 2020-04-10 02:54
Normal topic Error with xml script
by almeida85 » Tue, 2023-03-28 01:53
0
545 by almeida85
Tue, 2023-05-16 01:00
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Mon, 2016-07-25 13:35
1
2,378 by gsuchunli
Mon, 2016-07-25 13:56
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Wed, 2016-07-06 10:35
1
2,070 by rmoretti
Tue, 2016-07-12 08:56
Normal topic ERROR: APBS failed to generate the result file.
by bhavranek » Sat, 2021-12-18 11:01
1
1,097 by bhavranek
Sun, 2021-12-26 21:05
Normal topic ERROR: Assertion `static_cast< size_type >( i - l_ ) < super::size()` failed. ERROR:: Exit from: src/utility/vectorL.hh line: 42
by yliang20 » Wed, 2022-06-15 22:22
2
1,286 by jxw
Wed, 2023-10-11 10:04
Normal topic Error: in membrane docking : Cannot split pose by membrane jump! Quitting...
by Astghik » Tue, 2020-11-24 05:27
2
1,584 by Astghik
Thu, 2020-12-03 02:35
Normal topic ERROR: no fragment to compute secondary structure
by byin » Sun, 2011-08-07 23:55
3
4,523 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: ResidueType::add_ring: Requested atoms don't exist in this ResidueType!
by walidabualafia » Thu, 2023-07-20 09:44
1
372 by rmoretti
Thu, 2023-07-20 10:08
Normal topic ERROR: Specified chain does not exist.
by ajaniharesh » Fri, 2019-04-05 11:14
2
2,658 by ajaniharesh
Tue, 2019-04-09 06:53
Normal topic ERROR: Unable to fill in missing atoms.
by mieczyslaw » Tue, 2020-10-20 09:43
7
6,210 by rayyoung
Thu, 2021-11-18 10:13
Normal topic error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease
by xinmiaohe » Thu, 2020-01-30 22:09
1
1,983 by xinmiaohe
Fri, 2020-01-31 08:23
Normal topic ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly'
by smiruthi » Mon, 2011-12-12 14:27
1
2,785 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Errors about rifdock step 15
by ng98 » Thu, 2024-02-01 17:41
0
221 by ng98
Thu, 2024-02-01 17:41
Normal topic errors about RIFdocking
by sia » Sun, 2022-07-24 20:45
7
2,552 by ng98
Mon, 2024-01-08 16:24
Hot topic Errors in Getting Erraser to run
by belousoff » Thu, 2017-06-01 16:13
15
12,248 by belousoff
Mon, 2017-06-26 16:46
Normal topic example scripts for comparative modeling
by fglaser » Sun, 2011-02-27 21:50
2
3,592 by maxebert
Mon, 2014-04-21 06:47
Normal topic Executing the clean_pdb.py script
by Rkfoury » Fri, 2015-02-20 10:16
1
3,856 by lanselibai
Tue, 2015-02-24 02:36
Normal topic Expected density
by GabrielDucrocq » Thu, 2022-07-14 06:38
1
976 by matteoferla
Wed, 2022-07-20 10:50
Normal topic extract docking pose from ligand docking silent file
by Ruska322 » Sat, 2019-09-07 05:21
0
994 by Ruska322
Sat, 2019-09-07 05:21
Normal topic Extract PDB structures from database
by cossio » Mon, 2018-01-29 09:30
3
3,761 by rmoretti
Fri, 2018-11-23 11:23
Normal topic extract silent error - tag mismatch
by shrutikhare » Thu, 2014-04-03 00:13
5
6,977 by rmoretti
Mon, 2014-04-21 10:47
Normal topic Extracting top score PIPER models
by almeida85 » Mon, 2020-08-31 07:17
0
995 by almeida85
Mon, 2020-08-31 07:17
Normal topic extract_pdb application parse error with silent file
by staciekim » Tue, 2017-08-22 12:39
5
5,668 by rmoretti
Thu, 2017-08-24 08:19
Normal topic extract_pdbs fails to open silent file when -auto_setup_metals enabled
by attesor » Thu, 2015-01-15 03:22
4
5,008 by attesor
Tue, 2015-01-27 02:20
Normal topic Failed glycine check when running RosettaRemodel to build disulfide
by cheyuk » Fri, 2014-06-27 02:31
1
2,164 by everyday847
Sun, 2014-09-28 21:16
Normal topic Failing Fragment libraries us Chemical shifts with Robettaa
by kalabharath » Tue, 2015-04-28 19:33
2
2,743 by kalabharath
Wed, 2015-04-29 16:21
Normal topic Fast relax not working
by eyong123 » Fri, 2017-04-21 06:06
1
1,947 by rmoretti
Fri, 2017-04-21 07:41
Normal topic FASTA for Octopus
by Smbat » Wed, 2020-09-16 05:40
1
1,469 by rmoretti
Wed, 2020-09-16 22:11
Normal topic Fastrelax problem
by Pernille » Tue, 2014-06-17 08:59
1
2,095 by Pernille
Fri, 2014-06-20 00:17
Normal topic Fastrelax problem
by Pernille » Fri, 2014-06-20 00:16
2
3,889 by Pernille
Thu, 2014-07-03 07:21
Normal topic FastRelax Refinement severe clashes
by Victor Tobiasson » Thu, 2021-05-20 06:55
0
785 by Victor Tobiasson
Thu, 2021-05-20 06:55
Normal topic FastRelaxMover parameters for antibody-antigen interaction analysis
by samuel_k » Thu, 2022-01-27 01:08
0
989 by samuel_k
Thu, 2022-01-27 01:08
Normal topic Fastsaxs
by Pernille » Mon, 2013-07-22 07:29
14
37,598 by rmoretti
Mon, 2021-06-14 12:56
Normal topic favor native residue in fixBB design
by ast » Mon, 2012-12-10 06:00
4
4,772 by smlewis
Mon, 2014-04-21 06:47
Normal topic fa_plane enregy term in scoring weights
by ytao » Fri, 2012-11-30 20:25
4
4,968 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fewer than expected structures in clustering output
by fabiotrovato » Thu, 2020-08-20 00:59
0
798 by fabiotrovato
Thu, 2020-08-20 00:59
Normal topic Files for Spatial Constraints
by Derek » Tue, 2016-04-12 01:00
1
1,953 by Derek
Wed, 2016-04-27 01:31
Normal topic Filling the missing loops
by code_Monkey » Tue, 2021-04-27 07:44
2
1,674 by code_Monkey
Tue, 2021-04-27 12:11
Normal topic Filter based on ligand_is_touching
by Swillard » Mon, 2017-09-11 19:00
3
2,989 by rmoretti
Mon, 2018-11-12 14:35
Normal topic Filter ddg_filter reports failure!
by deepanshuiitb » Fri, 2015-02-27 18:19
2
3,004 by deepanshuiitb
Sat, 2015-02-28 19:24
Normal topic Filter for fixed-bb design using RosettaScript?
by chrisHKL » Fri, 2020-02-28 19:47
4
2,489 by vmulligan
Mon, 2020-03-02 13:40
Normal topic Filtering while clustering
by David Hoover » Wed, 2011-03-30 07:03
1
2,679 by smlewis
Mon, 2014-04-21 06:47
Normal topic Finding lowest energy structure among generated structures
by Marius1987 » Sun, 2016-04-10 11:38
0
1,551 by Marius1987
Sun, 2016-04-10 12:09
Normal topic fix the left part doesn't work
by albumns » Wed, 2012-11-07 00:02
9
7,024 by albumns
Mon, 2014-04-21 06:47
Normal topic fixbb algorithm reference?
by tylerborrman » Wed, 2015-09-23 10:20
4
5,255 by tylerborrman
Mon, 2015-09-28 09:30
Normal topic fixbb and ncaa's
by jarek » Thu, 2012-11-08 04:55
4
4,897 by jcminerlanl
Thu, 2017-12-21 10:13
Normal topic fixbb design using damped LJ
by Anonymous » Fri, 2012-08-17 03:51
8
7,896 by Anonymous
Mon, 2014-04-21 06:47
Hot topic Fixbb Multiple Resfiles
by protos_heis » Mon, 2012-10-15 10:34
18
15,128 by protos_heis
Mon, 2014-04-21 06:47
Normal topic fixbb with symmetry error
by Prasanth Kumar » Sun, 2014-01-26 10:56
4
5,466 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic FixedBB design output no beta strands
by tkoh » Fri, 2023-08-25 01:02
1
374 by rmoretti
Tue, 2023-08-29 20:13
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