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Rosetta 3 - Applications
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Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains by ahonegger » Tue, 2012-04-24 01:34 |
3 |
4,063 |
by ahonegger Mon, 2014-04-21 06:47 |
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rosetta 3.3 - antibody by ron amon » Mon, 2014-07-21 00:44 |
1 |
2,399 |
by rmoretti Mon, 2014-07-21 10:51 |
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Robetta ab initio - TrRosetta for membrane proteins by benhardy » Wed, 2020-09-30 08:42 |
0 |
1,279 |
by benhardy Wed, 2020-09-30 08:42 |
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RNP structure prediction flags by daniloboskovic » Fri, 2019-08-16 11:10 |
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902 |
by daniloboskovic Fri, 2019-08-16 11:17 |
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rna structure prediction by cbala » Thu, 2011-04-14 07:42 |
5 |
5,663 |
by mkoohim Mon, 2014-04-21 06:47 |
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RNA structure prediction by emaghdam » Sat, 2014-02-08 01:30 |
4 |
5,594 |
by rmoretti Mon, 2014-02-24 09:12 |
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RNA modeling with step wise Monte Carlo error by szcshr123 » Mon, 2020-12-07 18:08 |
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1,716 |
by everyday847 Wed, 2020-12-09 21:46 |
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Rna Denovo by helderveras » Wed, 2020-05-06 08:40 |
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2,812 |
by everyday847 Wed, 2020-05-20 08:52 |
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RMSD calculation by hamedkhakzad » Tue, 2016-09-13 04:56 |
2 |
4,015 |
by rmoretti Wed, 2016-09-14 02:05 |
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RMS determination using Rosetta 3.3 by adraney » Thu, 2011-12-08 12:44 |
2 |
3,222 |
by mark.wilson Mon, 2014-04-21 06:47 |
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RIFdocking：Unable to locate database file chemical/residue_type_sets/fa_standard/residue_types/ by sia » Tue, 2022-08-02 20:06 |
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1,480 |
by SeongRyeong Go Mon, 2022-08-15 18:31 |
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revert_design_to_native app comparison to FavorNativeResidue mover by nwhoppe » Wed, 2016-06-29 14:35 |
3 |
4,006 |
by rmoretti Tue, 2016-07-12 09:30 |
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Results of enzyme_design not consistent with Resfile by yogeshkd » Thu, 2013-02-14 15:56 |
6 |
6,335 |
by yogeshkd Mon, 2014-04-21 06:47 |
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restrain residues in docking by albumns » Sat, 2013-11-02 08:52 |
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2,566 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Residue_energy_breakdown utility by cn » Sat, 2012-03-17 06:11 |
3 |
3,492 |
by cn Mon, 2014-04-21 06:47 |
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residue_energy_breakdown of a protein-ligand complex. by sam_dc » Tue, 2021-05-18 04:45 |
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1,107 |
by rmoretti Tue, 2021-05-18 07:21 |
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residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
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2,923 |
by Pernille Wed, 2014-10-08 10:41 |
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Residue selector by Alison_Yajie » Wed, 2020-06-17 19:57 |
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785 |
by Alison_Yajie Thu, 2020-06-18 09:47 |
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Resfile as a input for InterfaceAnalyzer by palak8669 » Sun, 2015-06-07 21:46 |
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1,965 |
by smlewis Mon, 2015-06-08 06:35 |
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Reproducing the exact result using information from previos run by nawsad » Thu, 2013-03-14 12:05 |
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2,536 |
by nawsad Mon, 2014-04-21 06:47 |
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Reproduce Robetta's ddg values of interface alanine scan using Rosetta? by cossio » Mon, 2015-01-19 07:14 |
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2,681 |
by cossio Mon, 2015-01-19 07:14 |
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Representing Cross-linked nitrogens by jjlee2 » Sat, 2011-11-26 18:42 |
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2,393 |
by smlewis Mon, 2014-04-21 06:47 |
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reporting bugs? (erraser in rosetta 3.10) by meyer » Fri, 2018-12-14 09:40 |
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1,885 |
by everyday847 Fri, 2019-03-29 13:13 |
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ReplicaDock2.0 demo fails with MPIFileBufJobDistributor: (1) [ ERROR ] by erpannec » Tue, 2022-08-09 05:42 |
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1,472 |
by erpannec Thu, 2022-09-15 05:17 |
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ReplicaDock 2.0 Native vs Input Structure Flags Confusion by katherinemccoy » Tue, 2022-12-27 06:42 |
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4,395 |
by katherinemccoy Tue, 2023-02-28 18:19 |
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Repeatability of DDG calculation by jennifer » Wed, 2015-04-08 05:29 |
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1,560 |
by jennifer Wed, 2015-04-08 05:29 |
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Repacker vs minimization by Elijah_Hix » Fri, 2021-07-02 07:25 |
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594 |
by Elijah_Hix Fri, 2021-07-02 07:25 |
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remove membrane for RosettaMPdock by lluoto » Wed, 2023-12-06 06:22 |
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25 |
by rmoretti Thu, 2023-12-07 12:43 |
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RemodelMover and Input Pose by ozyo » Tue, 2020-12-29 09:41 |
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814 |
by ozyo Tue, 2020-12-29 09:41 |
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remodel: what are the exact meanings of notations for secondary structure? by lanselibai » Sat, 2015-01-17 04:53 |
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1,461 |
by lanselibai Sat, 2015-01-17 07:57 |
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Remodel: the pose does not have residue with chain=H, PDBnum=114 by lanselibai » Wed, 2019-12-25 13:35 |
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2,038 |
by lanselibai Fri, 2019-12-27 09:38 |
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Remodel: neighbor cutoff by felipet » Wed, 2014-07-16 08:11 |
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2,611 |
by felipet Thu, 2014-07-17 10:13 |
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Remodel's problem in treatment with non-protein residues by Corvin » Mon, 2021-12-13 09:07 |
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854 |
by Corvin Mon, 2021-12-13 09:07 |
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Remodel with residue constraints by sn » Fri, 2017-03-10 01:40 |
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2,319 |
by rmoretti Mon, 2017-03-13 08:01 |
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remodel gives no output by coomteng@gmail.com » Tue, 2018-03-06 07:40 |
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3,013 |
by rmoretti Wed, 2018-03-07 08:44 |
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remodel ERROR: unrecognized mm_atom_type_name RGU by daniloboskovic » Sat, 2020-02-22 11:55 |
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1,365 |
by daniloboskovic Tue, 2020-02-25 08:28 |
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Relaxing protein-RNA complexes by rkirchdo » Fri, 2018-08-03 08:50 |
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1,536 |
by rmoretti Fri, 2018-08-24 11:28 |
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Relaxed proteins show higher clash score in molprobity results. by Wang Zhe » Fri, 2021-12-03 04:32 |
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2,621 |
by smlewis Wed, 2021-12-08 13:02 |
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relax.linuxgccrelease in multiple processors by jpfuenzalidawx » Thu, 2021-01-14 14:07 |
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2,683 |
by jadolfbr Fri, 2021-01-15 08:06 |
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relax with resfile by gw » Fri, 2011-08-05 10:57 |
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5,985 |
by nannemdp Mon, 2014-04-21 06:47 |
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Relax with RDC data gives segmentation fault by sn » Mon, 2018-07-23 11:39 |
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1,531 |
by rmoretti Fri, 2018-08-03 07:54 |
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Relax with protein+complex by Prasanth Kumar » Wed, 2013-05-08 23:16 |
4 |
5,540 |
by Prasanth Kumar Mon, 2014-04-21 06:47 |
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Relax with multiple small molecules by jharamesh » Sun, 2019-05-26 19:34 |
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1,610 |
by rmoretti Mon, 2019-06-24 15:19 |
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Relax with a ligand is messing up the coordinates of the ligand by brspurri » Sat, 2015-01-24 12:39 |
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2,808 |
by rmoretti Mon, 2015-01-26 12:15 |
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relax VS. backrub by jiongzhang » Mon, 2012-07-02 14:52 |
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2,514 |
by smlewis Mon, 2014-04-21 06:47 |
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Relax structure with metal cofactors by h_trasatti » Tue, 2017-03-14 14:04 |
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2,890 |
by rmoretti Tue, 2017-03-28 08:51 |
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relax protein with multi-conformer bound ligand by xfradera » Thu, 2023-01-12 09:10 |
4 |
3,056 |
by rmoretti Mon, 2023-02-06 15:06 |
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Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2 by AJVincelli » Sat, 2018-07-14 13:14 |
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2,837 |
by AJVincelli Sun, 2018-11-25 11:29 |
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relax job failed by albumns » Sat, 2014-07-26 00:21 |
1 |
2,076 |
by rmoretti Sun, 2014-07-27 10:48 |
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Relax is resulting in a Segmentation Fault by brspurri » Thu, 2017-08-24 18:46 |
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3,577 |
by brspurri Sat, 2017-08-26 07:08 |
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Relax in membrane pull my protein out of the membrane by Martin Floor » Wed, 2022-01-26 07:46 |
0 |
931 |
by Martin Floor Wed, 2022-01-26 07:46 |
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Relax evaluates protein-DNA complexes? by pablogalazdavison » Thu, 2022-05-12 12:05 |
2 |
1,279 |
by pablogalazdavison Fri, 2022-05-20 12:27 |
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relax constraints not minimized by m_grisewood » Fri, 2012-08-10 08:31 |
2 |
3,582 |
by m_grisewood Mon, 2014-04-21 06:47 |
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Relax both peptide and ligands by matteoferla » Thu, 2018-09-13 03:11 |
3 |
2,512 |
by smlewis Fri, 2018-09-14 10:34 |
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relax and movemap by Alison_Yajie » Wed, 2020-05-20 21:27 |
3 |
2,113 |
by smlewis Thu, 2020-05-21 21:05 |
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Relax a structure with >1 copy of a modified residue fails [Solved] by franfdez » Wed, 2012-02-08 00:47 |
6 |
6,267 |
by franfdez Mon, 2014-04-21 06:47 |
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relax a protein with phosphorylated serine residue by zruan » Thu, 2018-02-01 09:18 |
3 |
2,790 |
by rmoretti Tue, 2018-02-06 09:47 |
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Regarding the efficiency of the new low resolution ligand-docking movement “Transform”. by Martin Floor » Mon, 2017-05-15 09:19 |
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2,530 |
by Martin Floor Mon, 2017-05-15 11:13 |
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regarding extracting silent file - renamed tag by shrutikhare » Thu, 2014-04-17 01:19 |
2 |
2,635 |
by shrutikhare Fri, 2014-04-18 23:11 |
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refining crystal structure using phenix without CIF file by banshee » Fri, 2016-09-09 01:14 |
2 |
3,086 |
by banshee Mon, 2016-09-12 23:41 |
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References where Rosetta is used to compute ddG of binding after mutation? by cossio » Tue, 2015-03-17 05:13 |
1 |
2,814 |
by rmoretti Wed, 2015-03-25 11:33 |
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RECCESS-Rosetta Segmentation Fault with nonnatural residues by skorro » Tue, 2023-07-25 17:13 |
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272 |
by skorro Fri, 2023-07-28 12:20 |
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Rebuilding the structure from unknown residues by sushreet » Mon, 2016-06-27 09:32 |
4 |
4,967 |
by rmoretti Tue, 2016-07-12 09:35 |
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Re: Glutamic acid protonation by bharat_46010 » Fri, 2017-02-10 03:08 |
4 |
4,547 |
by rmoretti Mon, 2017-02-20 08:09 |
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radius of gyration as constrain by dhirajks » Sat, 2018-05-05 23:00 |
1 |
1,631 |
by smlewis Mon, 2018-05-07 11:42 |
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RAbD with N-term，Proline-like ncaa returns segmentation fault during CCDEndsGraftMover by CordycepsLin » Sun, 2022-02-06 19:09 |
9 |
3,084 |
by CordycepsLin Wed, 2022-02-09 19:39 |
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Questions for "modeling_instructions.pdf" in "Homology or Loop Modelling" by lanselibai » Sun, 2014-09-21 09:02 |
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10,474 |
by lanselibai Tue, 2014-10-07 02:58 |
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Question with rosetta AbPredict tutorial by terabithia2011 » Mon, 2021-01-25 09:24 |
0 |
730 |
by terabithia2011 Mon, 2021-01-25 09:24 |
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Question on restraining receptor symmetry when docking ligand by subha » Fri, 2018-07-06 21:59 |
1 |
1,472 |
by rmoretti Fri, 2018-08-03 08:16 |
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Question on Designing with NCAAs by salvatta » Mon, 2018-09-10 10:09 |
1 |
1,582 |
by rmoretti Thu, 2018-09-20 09:23 |
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Question about running scallo by danbo » Mon, 2021-11-29 23:25 |
8 |
3,081 |
by danbo Wed, 2021-12-22 23:51 |
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Question about fastsaxs and saxs_score by orionshih » Thu, 2019-06-13 02:30 |
2 |
1,813 |
by orionshih Wed, 2019-06-26 03:54 |
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Python2 script in Rosetta3.13 by ddhoyo » Wed, 2021-09-15 04:05 |
1 |
1,087 |
by matteoferla Wed, 2021-09-15 06:04 |
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PyIgClassify cannot renumber and label CDRs my Nanobody-Antigen complex for RabD by WBNeT » Fri, 2023-07-07 10:58 |
1 |
285 |
by jadolfbr Mon, 2023-07-10 09:05 |
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Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)? by Corvin » Wed, 2020-12-16 04:58 |
0 |
973 |
by Corvin Wed, 2020-12-30 09:21 |
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ProteinLigandInterfaceUpweighter for protein-protein interactions? by ahonegger » Mon, 2014-06-02 06:53 |
2 |
3,148 |
by ahonegger Fri, 2014-06-06 09:31 |
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ProteinInterfaceMS by rbjacob » Wed, 2018-10-24 11:31 |
1 |
1,434 |
by rmoretti Wed, 2018-11-21 15:10 |
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ProteinInterfaceDesign algorithm questions by tsztain » Mon, 2019-02-18 14:10 |
1 |
1,693 |
by rmoretti Sun, 2019-08-25 19:15 |
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Protein/Protein Ddg demo: How to write predicted mutant structures? by cossio » Wed, 2015-11-04 20:14 |
1 |
1,862 |
by rmoretti Tue, 2015-11-10 11:10 |
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protein-protein docking with flexible backbone by tim » Fri, 2013-12-20 05:52 |
1 |
4,286 |
by rmoretti Mon, 2014-04-21 06:48 |
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Protein-Protein Docking or Comparative Modeling by Morrian_Lynn » Wed, 2020-01-29 19:01 |
1 |
1,282 |
by danpf Fri, 2020-02-21 18:23 |
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protein-protein docking by cbala » Mon, 2011-04-18 09:15 |
1 |
2,551 |
by smlewis Mon, 2014-04-21 06:47 |
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protein-ligand docking rescoring with interfaceAnalyzer by syntekabio2019 » Sat, 2020-12-19 03:59 |
2 |
1,317 |
by syntekabio2019 Sun, 2020-12-20 21:10 |
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Protein-DNA Docking using RosettaScripts? by brspurri » Fri, 2013-06-07 09:06 |
1 |
4,332 |
by rmoretti Mon, 2014-04-21 06:48 |
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protein structure prediction using relax -- high-powered jobs by rfieldhouse » Mon, 2011-05-30 18:29 |
7 |
7,470 |
by dimaio Mon, 2014-04-21 06:47 |
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protein relax by Alison_Yajie » Tue, 2020-05-19 08:29 |
0 |
825 |
by Alison_Yajie Tue, 2020-05-19 08:29 |
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protein protein interaction design by Negarsardar » Wed, 2019-05-15 06:13 |
3 |
3,321 |
by ajasja Wed, 2019-05-15 15:40 |
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Protein Protein Docking with Linker by mrinal » Mon, 2023-03-20 15:58 |
0 |
627 |
by mrinal Mon, 2023-03-20 15:58 |
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Protein Protein Docking with Constraints by ajaniharesh » Wed, 2019-04-10 07:26 |
1 |
1,574 |
by rmoretti Thu, 2019-05-09 15:40 |
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protein interface design by Negarsardar » Tue, 2019-05-28 07:04 |
2 |
1,997 |
by Negarsardar Thu, 2019-05-30 23:46 |
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protein interction design by Negarsardar » Wed, 2019-05-15 12:01 |
1 |
1,392 |
by rmoretti Wed, 2019-07-10 09:24 |
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Protein Ensemble RosettaLigand Docking by sam_dc » Fri, 2021-03-26 10:18 |
2 |
1,391 |
by sam_dc Fri, 2021-03-26 12:04 |
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protein docking failed by albumns » Thu, 2012-11-08 02:59 |
6 |
5,971 |
by rmoretti Mon, 2014-04-21 06:47 |
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Protein design: Ligand binding between two units of a homodimer by chemotaxis_123 » Sun, 2022-01-02 16:01 |
0 |
839 |
by chemotaxis_123 Sun, 2022-01-02 16:01 |
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Protein Design by ac.research » Wed, 2017-02-15 19:25 |
1 |
2,697 |
by cdbahl Sat, 2017-02-18 13:02 |
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proline patching problem by xun » Tue, 2012-01-03 11:15 |
3 |
3,822 |
by xun Mon, 2014-04-21 06:47 |
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profit program in antibody design by tzhou » Tue, 2013-10-15 23:29 |
1 |
2,786 |
by rmoretti Mon, 2014-04-21 06:48 |
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Problems with waters in CoupledMoves application by Corvin » Tue, 2021-11-16 07:16 |
0 |
810 |
by Corvin Tue, 2021-11-16 07:22 |
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Problems with mpi version of antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 23:06 |
0 |
1,007 |
by Sunyp_IM Thu, 2020-05-28 23:07 |
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Problems with ligand when running RosettaLigand by Cat » Mon, 2013-05-20 15:58 |
6 |
6,521 |
by Aben Tue, 2023-04-18 01:31 |
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