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Rosetta 3 - Applications

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Normal topic RemodelMover and Input Pose
by ozyo » Tue, 2020-12-29 09:41
0
464 by ozyo
Tue, 2020-12-29 09:41
Normal topic remodel: what are the exact meanings of notations for secondary structure?
by lanselibai » Sat, 2015-01-17 04:53
0
1,192 by lanselibai
Sat, 2015-01-17 07:57
Normal topic Remodel: the pose does not have residue with chain=H, PDBnum=114
by lanselibai » Wed, 2019-12-25 13:35
1
1,259 by lanselibai
Fri, 2019-12-27 09:38
Normal topic Remodel: neighbor cutoff
by felipet » Wed, 2014-07-16 08:11
2
2,081 by felipet
Thu, 2014-07-17 10:13
Normal topic Remodel's problem in treatment with non-protein residues
by Corvin » Mon, 2021-12-13 09:07
0
202 by Corvin
Mon, 2021-12-13 09:07
Normal topic Remodel with residue constraints
by sn » Fri, 2017-03-10 01:40
2
1,782 by rmoretti
Mon, 2017-03-13 08:01
Normal topic remodel gives no output
by coomteng@gmail.com » Tue, 2018-03-06 07:40
3
2,229 by rmoretti
Wed, 2018-03-07 08:44
Normal topic remodel ERROR: unrecognized mm_atom_type_name RGU
by daniloboskovic » Sat, 2020-02-22 11:55
1
838 by daniloboskovic
Tue, 2020-02-25 08:28
Normal topic Relaxing protein-RNA complexes
by rkirchdo » Fri, 2018-08-03 08:50
1
1,114 by rmoretti
Fri, 2018-08-24 11:28
Normal topic Relaxed proteins show higher clash score in molprobity results.
by Wang Zhe » Fri, 2021-12-03 04:32
4
661 by smlewis
Wed, 2021-12-08 13:02
Normal topic relax.linuxgccrelease in multiple processors
by jpfuenzalidawx » Thu, 2021-01-14 14:07
5
1,352 by jadolfbr
Fri, 2021-01-15 08:06
Normal topic relax with resfile
by gw » Fri, 2011-08-05 10:57
3
5,117 by nannemdp
Mon, 2014-04-21 06:47
Normal topic Relax with RDC data gives segmentation fault
by sn » Mon, 2018-07-23 11:39
1
1,119 by rmoretti
Fri, 2018-08-03 07:54
Normal topic Relax with protein+complex
by Prasanth Kumar » Wed, 2013-05-08 23:16
4
4,600 by Prasanth Kumar
Mon, 2014-04-21 06:47
Normal topic Relax with multiple small molecules
by jharamesh » Sun, 2019-05-26 19:34
1
1,125 by rmoretti
Mon, 2019-06-24 15:19
Normal topic Relax with a ligand is messing up the coordinates of the ligand
by brspurri » Sat, 2015-01-24 12:39
1
2,323 by rmoretti
Mon, 2015-01-26 12:15
Normal topic relax VS. backrub
by jiongzhang » Mon, 2012-07-02 14:52
1
2,087 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax structure with metal cofactors
by h_trasatti » Tue, 2017-03-14 14:04
2
2,244 by rmoretti
Tue, 2017-03-28 08:51
Normal topic Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2
by AJVincelli » Sat, 2018-07-14 13:14
1
1,343 by AJVincelli
Sun, 2018-11-25 11:29
Normal topic relax job failed
by albumns » Sat, 2014-07-26 00:21
1
1,672 by rmoretti
Sun, 2014-07-27 10:48
Normal topic Relax is resulting in a Segmentation Fault
by brspurri » Thu, 2017-08-24 18:46
3
2,690 by brspurri
Sat, 2017-08-26 07:08
Normal topic Relax in membrane pull my protein out of the membrane
by Martin Floor » Wed, 2022-01-26 07:46
0
282 by Martin Floor
Wed, 2022-01-26 07:46
Normal topic Relax evaluates protein-DNA complexes?
by pablogalazdavison » Thu, 2022-05-12 12:05
2
137 by pablogalazdavison
Fri, 2022-05-20 12:27
Normal topic relax constraints not minimized
by m_grisewood » Fri, 2012-08-10 08:31
2
3,052 by m_grisewood
Mon, 2014-04-21 06:47
Normal topic Relax both peptide and ligands
by matteoferla » Thu, 2018-09-13 03:11
3
1,798 by smlewis
Fri, 2018-09-14 10:34
Normal topic relax and movemap
by Alison_Yajie » Wed, 2020-05-20 21:27
3
1,328 by smlewis
Thu, 2020-05-21 21:05
Normal topic Relax a structure with >1 copy of a modified residue fails [Solved]
by franfdez » Wed, 2012-02-08 00:47
6
5,280 by franfdez
Mon, 2014-04-21 06:47
Normal topic relax a protein with phosphorylated serine residue
by zruan » Thu, 2018-02-01 09:18
3
2,125 by rmoretti
Tue, 2018-02-06 09:47
Normal topic Regarding the efficiency of the new low resolution ligand-docking movement “Transform”.
by Martin Floor » Mon, 2017-05-15 09:19
2
1,954 by Martin Floor
Mon, 2017-05-15 11:13
Normal topic regarding extracting silent file - renamed tag
by shrutikhare » Thu, 2014-04-17 01:19
2
2,104 by shrutikhare
Fri, 2014-04-18 23:11
Normal topic refining crystal structure using phenix without CIF file
by banshee » Fri, 2016-09-09 01:14
2
2,419 by banshee
Mon, 2016-09-12 23:41
Normal topic References where Rosetta is used to compute ddG of binding after mutation?
by cossio » Tue, 2015-03-17 05:13
1
2,294 by rmoretti
Wed, 2015-03-25 11:33
Normal topic Rebuilding the structure from unknown residues
by sushreet » Mon, 2016-06-27 09:32
4
3,935 by rmoretti
Tue, 2016-07-12 09:35
Normal topic Re: Glutamic acid protonation
by bharat_46010 » Fri, 2017-02-10 03:08
4
3,594 by rmoretti
Mon, 2017-02-20 08:09
Normal topic radius of gyration as constrain
by dhirajks » Sat, 2018-05-05 23:00
1
1,214 by smlewis
Mon, 2018-05-07 11:42
Normal topic RAbD with N-term,Proline-like ncaa returns segmentation fault during CCDEndsGraftMover
by CordycepsLin » Sun, 2022-02-06 19:09
9
781 by CordycepsLin
Wed, 2022-02-09 19:39
Normal topic Questions for "modeling_instructions.pdf" in "Homology or Loop Modelling"
by lanselibai » Sun, 2014-09-21 09:02
10
8,902 by lanselibai
Tue, 2014-10-07 02:58
Normal topic Question with rosetta AbPredict tutorial
by terabithia2011 » Mon, 2021-01-25 09:24
0
396 by terabithia2011
Mon, 2021-01-25 09:24
Normal topic Question on restraining receptor symmetry when docking ligand
by subha » Fri, 2018-07-06 21:59
1
1,054 by rmoretti
Fri, 2018-08-03 08:16
Normal topic Question on Designing with NCAAs
by salvatta » Mon, 2018-09-10 10:09
1
1,133 by rmoretti
Thu, 2018-09-20 09:23
Normal topic Question about running scallo
by danbo » Mon, 2021-11-29 23:25
8
886 by danbo
Wed, 2021-12-22 23:51
Normal topic Question about fastsaxs and saxs_score
by orionshih » Thu, 2019-06-13 02:30
2
1,217 by orionshih
Wed, 2019-06-26 03:54
Normal topic Python2 script in Rosetta3.13
by ddhoyo » Wed, 2021-09-15 04:05
1
476 by matteoferla
Wed, 2021-09-15 06:04
Normal topic Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)?
by Corvin » Wed, 2020-12-16 04:58
0
508 by Corvin
Wed, 2020-12-30 09:21
Normal topic ProteinLigandInterfaceUpweighter for protein-protein interactions?
by ahonegger » Mon, 2014-06-02 06:53
2
2,579 by ahonegger
Fri, 2014-06-06 09:31
Normal topic ProteinInterfaceMS
by rbjacob » Wed, 2018-10-24 11:31
1
1,010 by rmoretti
Wed, 2018-11-21 15:10
Normal topic ProteinInterfaceDesign algorithm questions
by tsztain » Mon, 2019-02-18 14:10
1
1,201 by rmoretti
Sun, 2019-08-25 19:15
Normal topic Protein/Protein Ddg demo: How to write predicted mutant structures?
by cossio » Wed, 2015-11-04 20:14
1
1,485 by rmoretti
Tue, 2015-11-10 11:10
Normal topic protein-protein docking with flexible backbone
by tim » Fri, 2013-12-20 05:52
1
3,820 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Protein-Protein Docking or Comparative Modeling
by Morrian_Lynn » Wed, 2020-01-29 19:01
1
864 by danpf
Fri, 2020-02-21 18:23
Normal topic protein-protein docking
by cbala » Mon, 2011-04-18 09:15
1
2,148 by smlewis
Mon, 2014-04-21 06:47
Normal topic protein-ligand docking rescoring with interfaceAnalyzer
by syntekabio2019 » Sat, 2020-12-19 03:59
2
792 by syntekabio2019
Sun, 2020-12-20 21:10
Normal topic Protein-DNA Docking using RosettaScripts?
by brspurri » Fri, 2013-06-07 09:06
1
3,889 by rmoretti
Mon, 2014-04-21 06:48
Normal topic protein structure prediction using relax -- high-powered jobs
by rfieldhouse » Mon, 2011-05-30 18:29
7
6,349 by dimaio
Mon, 2014-04-21 06:47
Normal topic protein relax
by Alison_Yajie » Tue, 2020-05-19 08:29
0
514 by Alison_Yajie
Tue, 2020-05-19 08:29
Normal topic protein protein interaction design
by Negarsardar » Wed, 2019-05-15 06:13
3
2,245 by ajasja
Wed, 2019-05-15 15:40
Normal topic Protein Protein Docking with Constraints
by ajaniharesh » Wed, 2019-04-10 07:26
1
1,073 by rmoretti
Thu, 2019-05-09 15:40
Normal topic protein interface design
by Negarsardar » Tue, 2019-05-28 07:04
2
1,406 by Negarsardar
Thu, 2019-05-30 23:46
Normal topic protein interction design
by Negarsardar » Wed, 2019-05-15 12:01
1
1,000 by rmoretti
Wed, 2019-07-10 09:24
Normal topic Protein Ensemble RosettaLigand Docking
by sam_dc » Fri, 2021-03-26 10:18
2
731 by sam_dc
Fri, 2021-03-26 12:04
Normal topic protein docking failed
by albumns » Thu, 2012-11-08 02:59
6
5,003 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Protein design: Ligand binding between two units of a homodimer
by chemotaxis_123 » Sun, 2022-01-02 16:01
0
198 by chemotaxis_123
Sun, 2022-01-02 16:01
Normal topic Protein Design
by ac.research » Wed, 2017-02-15 19:25
1
2,231 by cdbahl
Sat, 2017-02-18 13:02
Normal topic proline patching problem
by xun » Tue, 2012-01-03 11:15
3
3,194 by xun
Mon, 2014-04-21 06:47
Normal topic profit program in antibody design
by tzhou » Tue, 2013-10-15 23:29
1
2,365 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Problems with waters in CoupledMoves application
by Corvin » Tue, 2021-11-16 07:16
0
281 by Corvin
Tue, 2021-11-16 07:22
Normal topic Problems with mpi version of antibody.linuxgccrelease
by Sunyp_IM » Thu, 2020-05-28 23:06
0
624 by Sunyp_IM
Thu, 2020-05-28 23:07
Normal topic Problems with ligand when running RosettaLigand
by Cat » Mon, 2013-05-20 15:58
5
5,229 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Problems with Ligand Docking
by saxen » Fri, 2011-08-19 00:19
8
7,255 by glemmon
Mon, 2014-04-21 06:47
Normal topic problems with generating the params file
by dyu » Thu, 2017-09-28 13:34
2
1,652 by dyu
Thu, 2017-09-28 18:54
Normal topic Problems with fixbb in Rosetta 3.5
by mdidonato » Wed, 2014-06-04 13:56
2
2,092 by mdidonato
Wed, 2014-06-04 14:55
Normal topic Problems with always_constrained_relax_script
by wsgosal » Wed, 2013-05-29 04:39
3
4,036 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Problems when running Rosetta VIP with cofactors
by Basantab » Fri, 2013-04-26 13:31
14
12,440 by Basantab
Mon, 2014-04-21 06:47
Normal topic Problems running pmut in parallel with openmpi
by RMJ » Fri, 2012-09-21 06:25
2
3,394 by RMJ
Mon, 2014-04-21 06:47
Normal topic Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM
by ajkal » Fri, 2017-04-14 08:44
3
2,669 by rmoretti
Thu, 2017-04-20 13:59
Normal topic problems in InterfaceAnalyzer analysis
by chenchaozhao » Fri, 2011-12-02 23:36
9
6,879 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with symmetric docking
by saxen » Fri, 2011-04-29 15:15
3
3,332 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with SymmDock in helical symmetry
by mumdonar » Wed, 2013-09-18 03:59
2
3,261 by mumdonar
Mon, 2014-04-21 06:48
Normal topic Problem with Scoring function and PlaceStub mover
by a-eatemadi@razi... » Sat, 2018-04-07 09:22
0
791 by a-eatemadi@razi...
Sat, 2018-04-07 09:24
Normal topic Problem with mpirun/mpiexec
by ahansel » Fri, 2020-07-10 08:37
1
2,268 by rmoretti
Fri, 2020-07-10 09:59
Normal topic problem with modelling of protein (140 and 150 residues respectively)
by krlitros87 » Wed, 2014-10-22 09:39
1
1,672 by rmoretti
Thu, 2014-10-23 13:55
Normal topic Problem with hotspot constraints.
by jarek » Wed, 2012-10-17 03:22
6
4,454 by xfliu
Mon, 2014-04-21 06:47
Normal topic problem with fixed_membrane option of membrane abinitio
by yescalona » Thu, 2013-01-17 15:42
3
2,876 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with AtomPair constraint
by jarek » Tue, 2012-10-09 07:28
1
1,958 by smlewis
Mon, 2014-04-21 06:47
Normal topic problem when exact pdb from silent file
by wenchangyu2008 » Mon, 2011-04-18 00:42
1
2,668 by wenchangyu2008
Mon, 2014-04-21 06:47
Normal topic Problem readin .ccp4 map file
by jljbbc » Tue, 2011-05-03 11:29
4
4,658 by jljbbc
Mon, 2014-04-21 06:47
Normal topic Problem passing a list of PDB files to minimize_with_cst
by dolevrahat » Sun, 2018-11-18 16:13
1
1,202 by rmoretti
Wed, 2018-11-21 15:31
Normal topic problem in using "zinc_site_redesign" tool
by Isomerase » Mon, 2022-03-28 01:19
0
93 by Isomerase
Mon, 2022-03-28 01:19
Normal topic Problem in using "loopmodel" application to add missing residues
by sushreet » Wed, 2014-08-27 12:43
1
1,604 by rmoretti
Thu, 2014-08-28 09:42
Normal topic Problem in redesign binding site
by armart999 » Fri, 2016-10-14 01:55
1
1,803 by rmoretti
Fri, 2016-10-14 08:42
Normal topic problem creating lips4 file using run_lips.pl
by adva » Sun, 2015-02-15 06:22
5
6,179 by linucks
Mon, 2016-06-20 12:02
Normal topic Problem about energy score
by tfliu » Tue, 2013-11-05 02:09
7
6,312 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic printing our per-residue energies including H-bonding energies
by vijayan » Tue, 2013-07-02 08:51
2
3,183 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Prevention of the negatively charged Nitrogen protonation by coupled_moves
by Corvin » Wed, 2020-11-18 02:56
4
1,290 by Corvin
Wed, 2020-11-25 02:58
Normal topic prepack_example.sh error message
by sacch » Sun, 2011-10-23 23:22
2
2,680 by sacch
Mon, 2014-04-21 06:47
Normal topic Predicting the part of protein strcutrue
by ksy141 » Tue, 2018-10-16 11:47
1
991 by jadolfbr
Fri, 2018-11-09 14:28
Normal topic Pre-packing a model for SWA loop building
by franfdez » Sun, 2014-07-27 02:16
2
2,417 by franfdez
Mon, 2014-07-28 01:04
Normal topic Positive scores with SymmDock in helical symmetry
by kxiao » Tue, 2014-02-11 07:37
4
3,694 by kxiao
Thu, 2014-06-05 08:37
Normal topic polymer docking using rosetta scripts
by syntekabio2019 » Fri, 2020-11-27 01:51
1
630 by rmoretti
Fri, 2020-11-27 10:47
Normal topic pmut_scan_parallel
by G Mustafa » Wed, 2018-10-17 05:41
0
964 by G Mustafa
Wed, 2018-10-17 05:41
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