You are here

Rosetta 3 - Applications

Topic / Topic starter Replies Viewssort descending Last post
Normal topic RosettaMatch
by xingqing326 » Mon, 2019-07-22 13:14
1
1,029 by rmoretti
Mon, 2019-08-26 12:57
Normal topic Building loop extensions in a membrane protein with Remodel
by benhardy » Tue, 2020-06-02 08:21
2
1,039 by benhardy
Sun, 2020-09-20 11:15
Normal topic RosettaScript Segmentation Fault (crash log attached)
by chrisHKL » Thu, 2020-03-05 07:21
2
1,041 by chrisHKL
Thu, 2020-03-05 09:11
Normal topic "make" error in "pdb2vall/structure_profile_scripts/DEPTH-CLONE-2.8.7"
by Danielsebas » Mon, 2019-09-02 08:14
2
1,044 by Danielsebas
Sun, 2019-09-08 02:08
Normal topic Trouble running MPI docking protocol, please help!
by Rob_Barringer » Tue, 2020-08-18 06:40
2
1,051 by Rob_Barringer
Fri, 2020-09-25 05:45
Normal topic is it necessary to always run relax before any Rosetta
by mainzer » Fri, 2019-04-12 01:35
1
1,052 by rmoretti
Wed, 2019-07-10 09:47
Normal topic RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist.
by kamau » Fri, 2017-12-01 08:42
1
1,059 by kamau
Wed, 2017-12-13 14:31
Normal topic De novo structure building with medium resolution map
by BuddySphinx » Tue, 2019-07-02 09:07
2
1,062 by BuddySphinx
Tue, 2019-07-02 12:03
Normal topic clean_pdb not working
by Andre Serobian » Thu, 2020-07-23 04:48
3
1,068 by rmoretti
Tue, 2020-07-28 08:24
Normal topic relax and movemap
by Alison_Yajie » Wed, 2020-05-20 21:27
3
1,069 by smlewis
Thu, 2020-05-21 21:05
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Mon, 2016-01-04 11:26
0
1,069 by achambe
Mon, 2016-01-04 11:26
Normal topic cm_scripts
by sn » Wed, 2018-02-14 11:00
1
1,075 by rmoretti
Wed, 2018-02-21 15:21
Normal topic radius of gyration as constrain
by dhirajks » Sat, 2018-05-05 23:00
1
1,075 by smlewis
Mon, 2018-05-07 11:42
Normal topic When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error
by Martin Floor » Thu, 2020-09-17 06:01
4
1,082 by Martin Floor
Tue, 2020-09-22 00:48
Normal topic How to write down a connection between ligand's atom and metal ion from enzyme?
by Corvin » Mon, 2021-02-15 06:54
7
1,085 by aloshbau
Mon, 2021-03-01 20:06
Normal topic remodel: what are the exact meanings of notations for secondary structure?
by lanselibai » Sat, 2015-01-17 04:53
0
1,086 by lanselibai
Sat, 2015-01-17 07:57
Normal topic Loop modeling/closure for many structures
by sn » Mon, 2017-03-06 11:25
1
1,087 by rmoretti
Mon, 2017-03-06 12:39
Normal topic splitfile.py
by saladi » Fri, 2018-03-30 10:31
1
1,091 by rmoretti
Tue, 2018-04-10 15:34
Normal topic "Install_dependencies.pl" gives "Aborted" when downloading "nr" database?
by Danielsebas » Sat, 2019-09-14 08:53
3
1,095 by danpf
Mon, 2019-09-16 09:51
Normal topic Finding lowest energy structure among generated structures
by Marius1987 » Sun, 2016-04-10 11:38
0
1,102 by Marius1987
Sun, 2016-04-10 12:09
Normal topic Docking protein complexes when constrained by oligomer symmetry
by msk » Tue, 2014-06-03 11:09
0
1,104 by msk
Tue, 2014-06-03 11:09
Normal topic reporting bugs? (erraser in rosetta 3.10)
by meyer » Fri, 2018-12-14 09:40
2
1,114 by everyday847
Fri, 2019-03-29 13:13
Normal topic mpirun docking_protocol
by NanB » Mon, 2020-08-03 11:38
1
1,116 by ssrb
Fri, 2020-08-14 09:18
Normal topic Transmembrane helix fold-and-dock?
by sarah_b » Tue, 2020-05-12 02:09
3
1,117 by jkleman
Tue, 2020-05-19 15:02
Normal topic Using residue patches in AbinitioRelax
by kent » Fri, 2018-11-02 11:19
1
1,123 by rmoretti
Wed, 2018-11-21 15:40
Normal topic Partial Active Site Design for a Novel Substrate
by Derek » Wed, 2017-05-17 19:41
1
1,126 by rmoretti
Thu, 2017-05-18 13:51
Normal topic ligand_docking_error
by Alison_Yajie » Mon, 2020-04-20 12:27
3
1,132 by YuFei
Sat, 2020-05-30 00:12
Normal topic Membrane Abinitio modeling
by bharat_46010 » Mon, 2017-03-13 22:39
1
1,134 by benhardy
Wed, 2020-09-30 04:24
Normal topic dssp
by MA » Thu, 2017-10-05 09:34
1
1,134 by rmoretti
Tue, 2017-10-10 09:54
Normal topic sequence design to enhance Fc / Fc-g Receptor binding
by jarod » Tue, 2017-05-23 09:00
1
1,134 by jadolfbr
Thu, 2017-06-01 10:00
Normal topic blast database error
by jessye » Sun, 2017-12-03 23:59
1
1,137 by smlewis
Mon, 2017-12-04 12:18
Normal topic Fragment library (vall file) from Robetta?
by alex » Sun, 2017-02-19 08:12
0
1,143 by alex
Sun, 2017-02-19 08:12
Normal topic Snugdock_error
by luicui » Thu, 2017-02-09 21:06
1
1,145 by smlewis
Thu, 2017-02-09 21:50
Normal topic Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2
by AJVincelli » Sat, 2018-07-14 13:14
1
1,153 by AJVincelli
Sun, 2018-11-25 11:29
Normal topic docking parse error
by dave » Tue, 2018-12-04 08:41
1
1,155 by rmoretti
Tue, 2018-12-04 08:55
Normal topic GrowLigand
by allan.ferrari » Sat, 2019-10-19 05:32
2
1,158 by allan.ferrari
Tue, 2019-11-05 16:52
Normal topic Filter for fixed-bb design using RosettaScript?
by chrisHKL » Fri, 2020-02-28 19:47
4
1,162 by vmulligan
Mon, 2020-03-02 13:40
Normal topic RosettaAntibody3 is failing with "Error: no input sequences were specified!"
by brspurri » Sun, 2020-08-16 16:16
4
1,169 by brspurri
Tue, 2020-08-18 09:57
Normal topic protein interface design
by Negarsardar » Tue, 2019-05-28 07:04
2
1,174 by Negarsardar
Thu, 2019-05-30 23:46
Normal topic How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure?
by Sunyp_IM » Sun, 2020-11-08 08:07
5
1,180 by Brahm Yachnin
Wed, 2020-11-18 17:21
Normal topic UnfoldedStateEnergyCalculator MPI Error
by colin.walsh.brown » Mon, 2017-11-13 09:43
1
1,180 by smlewis
Mon, 2017-11-13 10:43
Normal topic Choosing weight file for interface design?
by johnnytam100 » Tue, 2019-05-07 00:47
2
1,189 by johnnytam100
Tue, 2019-05-21 22:33
Normal topic "Make_fragments.pl" can't connect to dependencies links
by Corvin » Wed, 2019-09-04 23:54
2
1,189 by Corvin
Thu, 2019-10-10 01:12
Normal topic ddG calculations to study point mutations
by N.Chopra » Fri, 2018-12-07 12:36
1
1,190 by jeliazkov
Fri, 2018-12-07 12:51
Normal topic Template/Input length mismatch error during RosettaCM
by marinok » Mon, 2020-05-04 13:12
4
1,190 by marinok
Mon, 2020-05-11 12:48
Normal topic Enzyme Design FlexBB Protocol Bug: DNA/RNA handling
by kettner » Fri, 2019-06-14 14:16
1
1,195 by rmoretti
Mon, 2019-06-24 13:46
Normal topic ddg_monomer: if MPI executable is reproducible and efficient?
by lanselibai » Sun, 2015-01-11 09:48
0
1,197 by lanselibai
Sun, 2015-01-11 10:50
Normal topic Model monomer to fit cryo density map of a filament
by BuddySphinx » Wed, 2018-12-12 18:58
2
1,205 by BuddySphinx
Sun, 2018-12-30 16:49
Normal topic Error Interface analyser
by jrcf » Thu, 2017-06-22 12:55
1
1,206 by smlewis
Thu, 2017-06-22 13:31
Normal topic MPdocking I_sc
by jrcf » Mon, 2017-07-31 16:10
1
1,208 by rmoretti
Thu, 2017-08-03 09:29
Normal topic Repeatability of DDG calculation
by jennifer » Wed, 2015-04-08 05:29
0
1,210 by jennifer
Wed, 2015-04-08 05:29
Normal topic Calbur vs Energy Based Clustering
by Swillard » Sun, 2018-07-01 13:24
1
1,213 by rmoretti
Fri, 2018-08-03 08:26
Normal topic score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059'
by sn » Fri, 2017-03-24 12:26
1
1,215 by rmoretti
Fri, 2017-03-24 13:39
Normal topic Mutating phosphorylated residues to "canonical" residues and vice versa
by ValentinaSora » Mon, 2019-05-20 05:58
1
1,229 by rmoretti
Wed, 2019-07-10 09:22
Normal topic Rosetta failed in making score.fsc
by josdee » Sun, 2017-02-05 21:58
1
1,231 by smlewis
Mon, 2017-02-06 06:57
Normal topic Pepspec options
by shaunmk » Mon, 2015-04-27 02:33
0
1,231 by shaunmk
Mon, 2015-04-27 02:33
Normal topic ArchiveManager -- spinning down
by Marius1987 » Fri, 2016-12-23 03:10
1
1,232 by smlewis
Fri, 2016-12-23 07:04
Normal topic Does it make sense if I do backrub after sequence design?
by johnnytam100 » Thu, 2019-08-15 05:15
3
1,232 by johnnytam100
Fri, 2019-08-16 00:20
Normal topic Write error during saving of PDB-file after working with it in the Rosetta through Unix terminal
by Corvin » Thu, 2019-04-25 01:20
2
1,232 by Corvin
Wed, 2019-06-12 00:04
Normal topic Place ligand in a pocket
by sn » Fri, 2017-09-15 12:53
1
1,234 by rmoretti
Fri, 2017-09-15 13:11
Normal topic FloppyTail options error
by DmitriiN » Fri, 2016-11-11 02:54
1
1,239 by smlewis
Fri, 2016-11-11 08:33
Normal topic Using different number of 9-mers (UPDATED)
by JadAbbass » Mon, 2017-08-28 07:20
1
1,245 by rmoretti
Mon, 2017-09-04 10:33
Normal topic Speed problem when running RosettaLigand ligand docking
by Nicole Deng » Tue, 2019-10-08 04:29
2
1,249 by Nicole Deng
Tue, 2020-11-03 19:07
Normal topic Membrane protein protocol on PyRosetta
by jlapin » Sat, 2018-07-28 14:41
2
1,255 by jlapin
Wed, 2018-08-01 07:15
Normal topic Alanine Scanning for 1 Protein (no interface)
by mags33 » Fri, 2019-10-25 10:08
2
1,260 by mags33
Wed, 2019-11-06 09:35
Normal topic Rosetta make_fragments.pl error?
by Danielsebas » Mon, 2019-09-02 07:51
3
1,261 by Danielsebas
Thu, 2019-09-05 03:35
Normal topic Helical Symmetry Axis
by Sandy » Tue, 2016-05-31 18:48
0
1,262 by Sandy
Tue, 2016-05-31 18:48
Normal topic Model two domain protein
by sn » Sat, 2017-05-06 13:21
1
1,262 by rmoretti
Mon, 2017-05-15 08:54
Normal topic Can I believe the antibody design result?
by Sunyp_IM » Mon, 2020-11-30 03:29
6
1,262 by jadolfbr
Sun, 2020-12-06 17:41
Normal topic Domain insertion with Non-CAA
by mwfranklin » Mon, 2017-01-16 12:30
0
1,268 by mwfranklin
Mon, 2017-01-16 12:30
Normal topic Scoring functions: talaris2013 incompatible versions
by Smbat » Tue, 2020-10-13 06:18
5
1,268 by Astghik
Thu, 2020-10-15 00:48
Normal topic How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior )
by asbelx » Sat, 2019-06-08 00:07
3
1,271 by happycaapi
Tue, 2021-06-29 15:35
Normal topic Structure prediction using true distance and angle constraint
by maruhuang » Wed, 2019-08-21 02:29
4
1,281 by maruhuang
Thu, 2019-09-26 18:52
Normal topic Design with limited number of aminoacids at given position
by sdh_h » Sun, 2016-12-04 03:44
1
1,285 by smlewis
Thu, 2016-12-08 15:50
Normal topic Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0.
by daniloboskovic » Fri, 2019-11-08 08:24
0
1,286 by daniloboskovic
Fri, 2019-11-08 08:27
Normal topic Fast relax not working
by eyong123 » Fri, 2017-04-21 06:06
1
1,286 by rmoretti
Fri, 2017-04-21 07:41
Normal topic Docking prepack vs. relax
by David Weis » Tue, 2017-02-21 05:37
1
1,297 by smlewis
Tue, 2017-02-21 07:58
Normal topic Packstat application output
by Vedasheersh » Mon, 2017-07-03 02:45
1
1,300 by rmoretti
Mon, 2017-07-03 09:17
Normal topic pepspec anchor dock
by Astghik » Tue, 2020-10-20 05:31
6
1,305 by Pappmaschee
Thu, 2020-12-17 02:24
Normal topic Generating non-redundat dataset for loop models
by dario.corrada » Wed, 2016-03-09 03:00
1
1,309 by smlewis
Wed, 2016-03-09 04:11
Normal topic AbinitioRelax - Error with flags
by jmschu » Wed, 2018-11-21 17:36
1
1,311 by rmoretti
Fri, 2018-11-23 07:59
Normal topic Chemically bound ligand connection error
by tsztain » Tue, 2019-01-01 18:40
2
1,312 by tsztain
Mon, 2019-02-18 09:55
Normal topic A problem with "make_fragments.pl" script dependencies
by Corvin » Fri, 2019-08-16 04:30
2
1,321 by Corvin
Tue, 2019-08-27 00:46
Normal topic How to correctly incorporate constraint information into ab initio structure prediction?
by johnnytam100 » Tue, 2019-02-19 03:13
2
1,325 by johnnytam100
Fri, 2019-03-01 01:36
Normal topic heads up for constraints using GAUSSIANFUNC
by attesor » Thu, 2015-10-22 07:30
1
1,327 by smlewis
Thu, 2015-10-22 08:04
Normal topic Files for Spatial Constraints
by Derek » Tue, 2016-04-12 01:00
1
1,331 by Derek
Wed, 2016-04-27 01:31
Normal topic Protein/Protein Ddg demo: How to write predicted mutant structures?
by cossio » Wed, 2015-11-04 20:14
1
1,348 by rmoretti
Tue, 2015-11-10 11:10
Normal topic how to make "static" built binaries use multiple cpus like "mpi"?
by Danielsebas » Wed, 2019-09-18 06:41
3
1,349 by rmoretti
Wed, 2019-09-18 10:21
Normal topic cartfrag_overlap error while running hybridize protocol
by sn » Thu, 2017-12-21 10:24
2
1,349 by dnamkr
Mon, 2019-12-30 11:43
Normal topic fragment_picker bug
by David Hoover » Wed, 2012-02-29 11:43
0
1,351 by David Hoover
Mon, 2014-04-21 06:47
Normal topic Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans?
by ccottrell » Tue, 2020-05-05 20:30
5
1,353 by jadolfbr
Wed, 2020-05-06 11:37
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:16
1
1,353 by rmoretti
Fri, 2016-06-17 10:24
Normal topic antibody_numbering_converter cannot recognize the IMGT scheme
by cryosky » Sat, 2020-02-29 23:12
4
1,369 by jadolfbr
Sun, 2020-03-01 14:54
Normal topic Options "-out:prefix" didn't work
by maruhuang » Tue, 2019-09-10 05:42
4
1,374 by danpf
Fri, 2020-02-21 18:32
Normal topic RosettaAntibodyDesign: How can I run the protocol without allowing design?
by brspurri » Tue, 2020-05-26 08:12
5
1,376 by brspurri
Wed, 2020-06-03 13:20
Normal topic Rosetta_scripts error, Got some signal... It is:6
by jhm13c » Fri, 2017-04-14 14:05
1
1,382 by rmoretti
Sat, 2017-04-15 13:30
Normal topic weights for pH_protocol
by fmerino » Wed, 2017-04-26 07:14
1
1,384 by rmoretti
Thu, 2017-04-27 07:10
Normal topic Can't find RosettaRemodel in Rosetta 3.4
by petrikigor » Mon, 2012-12-03 13:56
0
1,395 by petrikigor
Mon, 2014-04-21 06:47
Normal topic RosettaCM hybridize mover error after fragment picking
by amorin » Thu, 2018-09-06 11:03
2
1,396 by dnamkr
Thu, 2019-12-26 10:22
Normal topic Segmentation Fault during prepacking
by Sunyp_IM » Fri, 2020-06-12 11:24
4
1,401 by Sunyp_IM
Thu, 2020-07-09 18:40
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - Applications