You are here

Rosetta 3 - Applications

Topic / Topic starter Replies Viewssort descending Last post
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Mon, 2016-01-04 11:26
0
1,521 by achambe
Mon, 2016-01-04 11:26
Normal topic Membrane ab-initio modelling of a beta-strand
by hzhekova » Mon, 2019-06-10 14:22
1
1,525 by rmoretti
Mon, 2019-06-24 14:39
Normal topic Could not open file /Rosetta/rosetta_bin_linux_2020.08.61146_bundle/main/database/citations/rosetta_citations
by yliang20 » Wed, 2022-06-15 11:26
2
1,526 by yliang20
Wed, 2022-06-15 13:46
Normal topic ProteinInterfaceMS
by rbjacob » Wed, 2018-10-24 11:31
1
1,526 by rmoretti
Wed, 2018-11-21 15:10
Normal topic Disulfide Bonds in Loop Modeling
by code_Monkey » Mon, 2021-05-03 08:27
2
1,529 by code_Monkey
Thu, 2021-05-06 07:14
Normal topic Question on restraining receptor symmetry when docking ligand
by subha » Fri, 2018-07-06 21:59
1
1,539 by rmoretti
Fri, 2018-08-03 08:16
Normal topic how to know the precedure of solving a actural bio problem? like interface design?
by qq7678500549 » Thu, 2020-08-06 18:45
2
1,540 by qq7678500549
Sun, 2020-08-09 18:59
Normal topic Finding lowest energy structure among generated structures
by Marius1987 » Sun, 2016-04-10 11:38
0
1,551 by Marius1987
Sun, 2016-04-10 12:09
Normal topic Error when trying docking protocol with different ligand
by scyphs » Wed, 2020-08-05 04:37
2
1,553 by scyphs
Mon, 2020-08-10 08:09
Normal topic loop design for Conformational bias
by dhirajks » Thu, 2019-05-09 21:22
1
1,556 by jadolfbr
Fri, 2019-05-10 07:53
Normal topic docking with capping groups
by xavierfradera » Sun, 2018-11-04 16:17
1
1,557 by maral.adeli-kou...
Wed, 2020-01-22 12:41
Normal topic LoopModeler mover unable to determine cut point
by gszwabowski » Mon, 2020-06-01 13:12
1
1,558 by matteoferla
Thu, 2020-07-02 07:27
Normal topic How to freeze ligand during FastRelax?
by dnamkr » Thu, 2020-01-02 14:53
1
1,563 by aloshbau
Fri, 2020-01-10 16:48
Normal topic small ligand docking in Ubuntu 20.04, please help
by guowuchen » Sun, 2022-03-06 18:12
2
1,565 by guowuchen
Mon, 2022-03-07 23:34
Normal topic Threading with Ligand
by ekwan » Thu, 2018-12-06 15:10
1
1,567 by rmoretti
Fri, 2019-03-29 13:21
Normal topic output file in ddg calcualtion
by malkeet.singh » Sun, 2017-12-03 07:59
1
1,579 by malkeet.singh
Wed, 2017-12-06 02:02
Normal topic Abinitio the Broker protocol
by ac.research » Sun, 2019-03-24 03:56
1
1,582 by rmoretti
Fri, 2019-04-05 00:18
Normal topic how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot?
by Danielsebas » Tue, 2019-09-24 03:51
1
1,584 by smlewis
Tue, 2019-09-24 12:43
Normal topic Error: in membrane docking : Cannot split pose by membrane jump! Quitting...
by Astghik » Tue, 2020-11-24 05:27
2
1,586 by Astghik
Thu, 2020-12-03 02:35
Normal topic Sampling a wider range of RMSD of poses by Rosetta Dock
by johnnytam100 » Tue, 2019-05-21 22:28
1
1,591 by johnnytam100
Thu, 2019-05-23 20:52
Normal topic "Angle constraint: 0-length bonds" error
by purvi24 » Sun, 2019-07-28 10:09
1
1,593 by rmoretti
Mon, 2019-08-26 12:49
Normal topic Rosetta scripts crash in CM workflow
by jlburkhead » Tue, 2019-12-03 22:55
1
1,596 by danpf
Fri, 2020-02-21 18:37
Normal topic broker domain insertion
by dhirajks » Sun, 2018-05-06 12:55
1
1,597 by rmoretti
Fri, 2018-05-18 12:28
Normal topic Coding denovo prediction from density maps in PyRosetta
by ahmadkhalifa » Tue, 2018-04-10 11:43
1
1,598 by rmoretti
Tue, 2018-04-10 15:29
Normal topic Ligand docking cannot open the protein file
by swarekwood » Tue, 2017-10-17 08:17
1
1,601 by rmoretti
Tue, 2017-10-17 09:03
Normal topic Comparative modeling using a two chained template for a one chain structure
by ahmadkhalifa » Mon, 2017-12-18 11:00
1
1,602 by rmoretti
Mon, 2018-01-15 16:14
Normal topic Usage of the TaskOperations "RestrictToCDRsAndNeighbors"
by johnnytam100 » Wed, 2019-04-10 02:58
1
1,605 by rmoretti
Wed, 2019-07-10 10:10
Normal topic Relax with RDC data gives segmentation fault
by sn » Mon, 2018-07-23 11:39
1
1,605 by rmoretti
Fri, 2018-08-03 07:54
Normal topic Repeatability of DDG calculation
by jennifer » Wed, 2015-04-08 05:29
0
1,610 by jennifer
Wed, 2015-04-08 05:29
Normal topic ligand_docking ligand preparation
by Alison_Yajie » Thu, 2020-05-21 10:21
2
1,610 by Alison_Yajie
Wed, 2020-06-24 12:38
Normal topic Relaxing protein-RNA complexes
by rkirchdo » Fri, 2018-08-03 08:50
1
1,615 by rmoretti
Fri, 2018-08-24 11:28
Normal topic RosettaAntibodyDesign] How can I use run_relax and run_snugdock as part of my command and workflow?
by brspurri » Thu, 2020-05-14 11:15
2
1,638 by brspurri
Thu, 2020-05-14 12:24
Normal topic Fragment library (vall file) from Robetta?
by alex » Sun, 2017-02-19 08:12
0
1,638 by alex
Sun, 2017-02-19 08:12
Normal topic ddg_monomer: if MPI executable is reproducible and efficient?
by lanselibai » Sun, 2015-01-11 09:48
0
1,643 by lanselibai
Sun, 2015-01-11 10:50
Normal topic Setting pivots points for GenKIC
by almeida85 » Tue, 2022-10-25 02:32
0
1,645 by almeida85
Tue, 2022-10-25 02:32
Normal topic simple_cycpep_predict - Design mode - The base name "ARG" was added more than once
by almeida85 » Thu, 2022-08-04 02:57
4
1,646 by almeida85
Thu, 2022-08-11 00:58
Normal topic Scoring docking error
by almeida85 » Wed, 2020-09-02 01:32
2
1,650 by almeida85
Wed, 2020-09-02 06:14
Normal topic Question on Designing with NCAAs
by salvatta » Mon, 2018-09-10 10:09
1
1,652 by rmoretti
Thu, 2018-09-20 09:23
Normal topic Pepspec options
by shaunmk » Mon, 2015-04-27 02:33
0
1,654 by shaunmk
Mon, 2015-04-27 02:33
Normal topic Rosetta_cm Partial Threading Removing Parts of Sequence
by gszwabowski » Thu, 2019-06-20 12:30
1
1,657 by rmoretti
Mon, 2019-06-24 13:43
Normal topic can anyone help me correct this script to do alanine scanning
by xinmiaohe » Mon, 2019-08-26 17:23
1
1,659 by xinmiaohe
Mon, 2019-08-26 18:16
Normal topic Protein Protein Docking with Constraints
by ajaniharesh » Wed, 2019-04-10 07:26
1
1,660 by rmoretti
Thu, 2019-05-09 15:40
Normal topic Surface Docking Crash (continued)
by dkozuch » Tue, 2017-09-12 06:18
1
1,661 by rmoretti
Tue, 2017-10-10 10:08
Normal topic Filling the missing loops
by code_Monkey » Tue, 2021-04-27 07:44
2
1,677 by code_Monkey
Tue, 2021-04-27 12:11
Normal topic Two questions on the RosettaScripts flexbb-interfacedesign.xml
by johnnytam100 » Fri, 2019-03-15 04:54
1
1,680 by rmoretti
Fri, 2019-03-29 09:58
Normal topic Modelling temperature dependent RNA structures
by tuleshwori » Tue, 2020-05-19 01:16
2
1,684 by tuleshwori
Thu, 2020-05-21 02:08
Normal topic cm_scripts
by sn » Wed, 2018-02-14 11:00
1
1,696 by rmoretti
Wed, 2018-02-21 15:21
Normal topic RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist.
by kamau » Fri, 2017-12-01 08:42
1
1,700 by kamau
Wed, 2017-12-13 14:31
Normal topic Loop modeling/closure for many structures
by sn » Mon, 2017-03-06 11:25
1
1,700 by rmoretti
Mon, 2017-03-06 12:39
Normal topic Small molecule dimer/trimer/etc docking
by lukasz » Tue, 2022-10-04 06:49
1
1,701 by rmoretti
Tue, 2022-10-04 07:57
Normal topic nstruct vs. trials?
by chrisHKL » Mon, 2020-03-02 13:22
2
1,702 by chrisHKL
Wed, 2020-03-04 10:49
Normal topic Ligand Rotamer Control in Macther
by Hirbond » Tue, 2022-10-25 13:01
0
1,706 by Hirbond
Wed, 2022-10-26 12:57
Normal topic How does the label in pdb files looks like when using ResiduePDBInfoHasLabel?
by johnnytam100 » Fri, 2019-08-16 00:25
1
1,708 by JackMaguire
Fri, 2019-08-16 07:41
Normal topic Relax with multiple small molecules
by jharamesh » Sun, 2019-05-26 19:34
1
1,715 by rmoretti
Mon, 2019-06-24 15:19
Normal topic How to create a native file for Protein-Protein docking
by Kotimedidhi » Fri, 2020-06-19 08:58
2
1,715 by Kotimedidhi
Mon, 2020-06-22 16:19
Normal topic radius of gyration as constrain
by dhirajks » Sat, 2018-05-05 23:00
1
1,717 by smlewis
Mon, 2018-05-07 11:42
Normal topic Membrane Abinitio modeling
by bharat_46010 » Mon, 2017-03-13 22:39
1
1,731 by benhardy
Wed, 2020-09-30 04:24
Normal topic Docking-I_sc values do not correlate
by jlawrie » Wed, 2020-08-12 08:08
2
1,732 by jlawrie
Wed, 2020-08-12 08:57
Normal topic Helical Symmetry Axis
by Sandy » Tue, 2016-05-31 18:48
0
1,735 by Sandy
Tue, 2016-05-31 18:48
Normal topic Highly negative total score
by Ruchi_P_Jain » Wed, 2019-04-24 19:55
1
1,740 by nannemdp
Thu, 2019-04-25 07:58
Normal topic VH-VL Orientation in antibody
by sujigeorge1979 » Mon, 2019-06-17 01:23
1
1,744 by jeliazkov
Mon, 2019-06-17 06:03
Normal topic sequence design to enhance Fc / Fc-g Receptor binding
by jarod » Tue, 2017-05-23 09:00
1
1,747 by jadolfbr
Thu, 2017-06-01 10:00
Normal topic NCAA attached at two points
by tsztain » Wed, 2021-06-16 15:20
3
1,749 by matteoferla
Sat, 2021-06-19 03:07
Normal topic Snugdock_error
by luicui » Thu, 2017-02-09 21:06
1
1,751 by smlewis
Thu, 2017-02-09 21:50
Normal topic where is generate_ligens.linuxgccrelease?
by Nicole Deng » Thu, 2020-12-03 00:00
2
1,753 by Nicole Deng
Fri, 2020-12-18 00:28
Normal topic "core.kinematics.FoldTree" error upon running RAbD
by Sunyp_IM » Fri, 2020-06-26 17:27
2
1,753 by Sunyp_IM
Fri, 2020-06-26 20:57
Normal topic Domain insertion with Non-CAA
by mwfranklin » Mon, 2017-01-16 12:30
0
1,755 by mwfranklin
Mon, 2017-01-16 12:30
Normal topic ligand docking with MPI
by Ruska322 » Wed, 2019-09-04 03:47
2
1,757 by Ruska322
Fri, 2019-09-06 07:13
Normal topic ReplicaDock2.0 demo fails with MPIFileBufJobDistributor: (1) [ ERROR ]
by erpannec » Tue, 2022-08-09 05:42
4
1,760 by erpannec
Thu, 2022-09-15 05:17
Normal topic snugdock: constrained backbone
by mahendra » Mon, 2022-11-14 02:51
0
1,762 by mahendra
Mon, 2022-11-14 02:51
Normal topic density scoring
by Tianyang89 » Sat, 2020-08-29 04:54
1
1,762 by danpf
Sun, 2020-08-30 22:23
Normal topic RIFdocking:Unable to locate database file chemical/residue_type_sets/fa_standard/residue_types/
by sia » Tue, 2022-08-02 20:06
2
1,765 by SeongRyeong Go
Mon, 2022-08-15 18:31
Normal topic splitfile.py
by saladi » Fri, 2018-03-30 10:31
1
1,768 by rmoretti
Tue, 2018-04-10 15:34
Normal topic Successful RosettaCM?
by jlawrie » Wed, 2020-08-19 06:53
2
1,769 by jlawrie
Thu, 2020-08-20 11:00
Normal topic Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1
by cm21 » Wed, 2020-05-20 08:55
2
1,770 by cm21
Wed, 2020-05-20 11:22
Normal topic BUG REPORT: Remodel Resfile ERROR: LEU was added more than once?
by daniloboskovic » Wed, 2020-04-29 01:17
2
1,770 by daniloboskovic
Wed, 2020-04-29 05:51
Normal topic fragment_picker bug
by David Hoover » Wed, 2012-02-29 11:43
0
1,772 by David Hoover
Mon, 2014-04-21 06:47
Normal topic Can't find RosettaRemodel in Rosetta 3.4
by petrikigor » Mon, 2012-12-03 13:56
0
1,772 by petrikigor
Mon, 2014-04-21 06:47
Normal topic De novo water predictions using SPaDES
by MNP1986 » Mon, 2019-03-25 07:53
1
1,774 by matteoferla
Tue, 2020-08-04 09:30
Normal topic hbond_sr_bb and hbond_lr_bb for different chains
by tylerborrman » Tue, 2020-10-13 13:41
2
1,783 by tylerborrman
Tue, 2021-02-09 16:33
Normal topic PEPSPEC
by Neeraj » Wed, 2018-01-03 02:24
1
1,783 by Andre Serobian
Wed, 2020-07-08 04:44
Normal topic Partial Active Site Design for a Novel Substrate
by Derek » Wed, 2017-05-17 19:41
1
1,783 by rmoretti
Thu, 2017-05-18 13:51
Normal topic Number of max allowed mutations from WT sequence
by mouung » Fri, 2020-09-04 02:33
2
1,793 by amorin
Fri, 2021-02-12 08:53
Normal topic Docking-RMS value nan
by jlawrie » Wed, 2020-08-12 07:03
2
1,794 by jlawrie
Wed, 2020-08-12 07:27
Normal topic ProteinInterfaceDesign algorithm questions
by tsztain » Mon, 2019-02-18 14:10
1
1,795 by rmoretti
Sun, 2019-08-25 19:15
Normal topic Error with Formatdb of legacy blast when running "install_dependencies.pl"?
by Danielsebas » Mon, 2019-09-16 09:30
2
1,799 by Danielsebas
Tue, 2019-09-17 01:03
Normal topic RosettaScripts filter BuriedUnsatHbonds2 missing still
by zdaw » Fri, 2020-12-11 12:39
3
1,803 by zdaw
Tue, 2020-12-15 15:38
Normal topic dssp
by MA » Thu, 2017-10-05 09:34
1
1,804 by rmoretti
Tue, 2017-10-10 09:54
Normal topic Docking Analysis and Metrics in RosettaLigand.
by sam_dc » Tue, 2021-04-20 03:54
1
1,804 by rmoretti
Tue, 2021-04-20 13:27
Normal topic change number of output pose files written out (default=50) in ligand docking XML script
by hdelrisco » Fri, 2019-10-18 13:50
2
1,806 by hdelrisco
Fri, 2019-10-18 17:16
Normal topic how to control alignment for energy_based_clustering
by xfradera » Tue, 2023-02-28 10:13
0
1,809 by xfradera
Tue, 2023-02-28 10:13
Normal topic Strong bias in sampling observed in RosettaDock
by chenna » Thu, 2020-08-27 22:23
2
1,811 by chenna
Tue, 2021-10-12 20:51
Normal topic Homology Modeling-no PDB output
by jlawrie » Wed, 2020-08-12 06:30
2
1,823 by jlawrie
Wed, 2020-08-12 08:56
Normal topic RosettaMatch
by xingqing326 » Mon, 2019-07-22 13:14
1
1,825 by rmoretti
Mon, 2019-08-26 12:57
Normal topic AddHelixSequenceConstraints Mover
by Negarsardar » Thu, 2019-05-30 03:17
2
1,830 by vmulligan
Thu, 2019-06-13 14:59
Normal topic RNA modeling with step wise Monte Carlo error
by szcshr123 » Mon, 2020-12-07 18:08
3
1,836 by everyday847
Wed, 2020-12-09 21:46
Normal topic missing atom number 5 atom name CB
by ajaniharesh » Fri, 2019-04-26 12:08
1
1,838 by rmoretti
Fri, 2019-04-26 12:13
Normal topic ArchiveManager -- spinning down
by Marius1987 » Fri, 2016-12-23 03:10
1
1,841 by smlewis
Fri, 2016-12-23 07:04
Normal topic FloppyTail options error
by DmitriiN » Fri, 2016-11-11 02:54
1
1,842 by smlewis
Fri, 2016-11-11 08:33
Normal topic Problem passing a list of PDB files to minimize_with_cst
by dolevrahat » Sun, 2018-11-18 16:13
1
1,847 by rmoretti
Wed, 2018-11-21 15:31
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - Applications