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Rosetta 3 - Applications
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RosettaMatch by xingqing326 » Mon, 2019-07-22 13:14 |
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1,029 |
by rmoretti Mon, 2019-08-26 12:57 |
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Building loop extensions in a membrane protein with Remodel by benhardy » Tue, 2020-06-02 08:21 |
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1,039 |
by benhardy Sun, 2020-09-20 11:15 |
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RosettaScript Segmentation Fault (crash log attached) by chrisHKL » Thu, 2020-03-05 07:21 |
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1,041 |
by chrisHKL Thu, 2020-03-05 09:11 |
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"make" error in "pdb2vall/structure_profile_scripts/DEPTH-CLONE-2.8.7" by Danielsebas » Mon, 2019-09-02 08:14 |
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1,044 |
by Danielsebas Sun, 2019-09-08 02:08 |
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Trouble running MPI docking protocol, please help! by Rob_Barringer » Tue, 2020-08-18 06:40 |
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1,051 |
by Rob_Barringer Fri, 2020-09-25 05:45 |
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is it necessary to always run relax before any Rosetta by mainzer » Fri, 2019-04-12 01:35 |
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1,052 |
by rmoretti Wed, 2019-07-10 09:47 |
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RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist. by kamau » Fri, 2017-12-01 08:42 |
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1,059 |
by kamau Wed, 2017-12-13 14:31 |
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De novo structure building with medium resolution map by BuddySphinx » Tue, 2019-07-02 09:07 |
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1,062 |
by BuddySphinx Tue, 2019-07-02 12:03 |
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clean_pdb not working by Andre Serobian » Thu, 2020-07-23 04:48 |
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1,068 |
by rmoretti Tue, 2020-07-28 08:24 |
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relax and movemap by Alison_Yajie » Wed, 2020-05-20 21:27 |
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1,069 |
by smlewis Thu, 2020-05-21 21:05 |
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Fusing C-terminal or N-terminal segments onto proteins using Remodel by achambe » Mon, 2016-01-04 11:26 |
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1,069 |
by achambe Mon, 2016-01-04 11:26 |
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cm_scripts by sn » Wed, 2018-02-14 11:00 |
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1,075 |
by rmoretti Wed, 2018-02-21 15:21 |
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radius of gyration as constrain by dhirajks » Sat, 2018-05-05 23:00 |
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1,075 |
by smlewis Mon, 2018-05-07 11:42 |
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When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error by Martin Floor » Thu, 2020-09-17 06:01 |
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1,082 |
by Martin Floor Tue, 2020-09-22 00:48 |
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How to write down a connection between ligand's atom and metal ion from enzyme? by Corvin » Mon, 2021-02-15 06:54 |
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1,085 |
by aloshbau Mon, 2021-03-01 20:06 |
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remodel: what are the exact meanings of notations for secondary structure? by lanselibai » Sat, 2015-01-17 04:53 |
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1,086 |
by lanselibai Sat, 2015-01-17 07:57 |
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Loop modeling/closure for many structures by sn » Mon, 2017-03-06 11:25 |
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1,087 |
by rmoretti Mon, 2017-03-06 12:39 |
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splitfile.py by saladi » Fri, 2018-03-30 10:31 |
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1,091 |
by rmoretti Tue, 2018-04-10 15:34 |
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"Install_dependencies.pl" gives "Aborted" when downloading "nr" database? by Danielsebas » Sat, 2019-09-14 08:53 |
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1,095 |
by danpf Mon, 2019-09-16 09:51 |
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Finding lowest energy structure among generated structures by Marius1987 » Sun, 2016-04-10 11:38 |
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1,102 |
by Marius1987 Sun, 2016-04-10 12:09 |
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Docking protein complexes when constrained by oligomer symmetry by msk » Tue, 2014-06-03 11:09 |
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1,104 |
by msk Tue, 2014-06-03 11:09 |
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reporting bugs? (erraser in rosetta 3.10) by meyer » Fri, 2018-12-14 09:40 |
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1,114 |
by everyday847 Fri, 2019-03-29 13:13 |
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mpirun docking_protocol by NanB » Mon, 2020-08-03 11:38 |
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1,116 |
by ssrb Fri, 2020-08-14 09:18 |
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Transmembrane helix fold-and-dock? by sarah_b » Tue, 2020-05-12 02:09 |
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1,117 |
by jkleman Tue, 2020-05-19 15:02 |
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Using residue patches in AbinitioRelax by kent » Fri, 2018-11-02 11:19 |
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1,123 |
by rmoretti Wed, 2018-11-21 15:40 |
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Partial Active Site Design for a Novel Substrate by Derek » Wed, 2017-05-17 19:41 |
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1,126 |
by rmoretti Thu, 2017-05-18 13:51 |
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ligand_docking_error by Alison_Yajie » Mon, 2020-04-20 12:27 |
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1,132 |
by YuFei Sat, 2020-05-30 00:12 |
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Membrane Abinitio modeling by bharat_46010 » Mon, 2017-03-13 22:39 |
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1,134 |
by benhardy Wed, 2020-09-30 04:24 |
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dssp by MA » Thu, 2017-10-05 09:34 |
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1,134 |
by rmoretti Tue, 2017-10-10 09:54 |
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sequence design to enhance Fc / Fc-g Receptor binding by jarod » Tue, 2017-05-23 09:00 |
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1,134 |
by jadolfbr Thu, 2017-06-01 10:00 |
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blast database error by jessye » Sun, 2017-12-03 23:59 |
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1,137 |
by smlewis Mon, 2017-12-04 12:18 |
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Fragment library (vall file) from Robetta? by alex » Sun, 2017-02-19 08:12 |
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1,143 |
by alex Sun, 2017-02-19 08:12 |
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Snugdock_error by luicui » Thu, 2017-02-09 21:06 |
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1,145 |
by smlewis Thu, 2017-02-09 21:50 |
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Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2 by AJVincelli » Sat, 2018-07-14 13:14 |
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1,153 |
by AJVincelli Sun, 2018-11-25 11:29 |
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docking parse error by dave » Tue, 2018-12-04 08:41 |
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1,155 |
by rmoretti Tue, 2018-12-04 08:55 |
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GrowLigand by allan.ferrari » Sat, 2019-10-19 05:32 |
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1,158 |
by allan.ferrari Tue, 2019-11-05 16:52 |
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Filter for fixed-bb design using RosettaScript? by chrisHKL » Fri, 2020-02-28 19:47 |
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1,162 |
by vmulligan Mon, 2020-03-02 13:40 |
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RosettaAntibody3 is failing with "Error: no input sequences were specified!" by brspurri » Sun, 2020-08-16 16:16 |
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1,169 |
by brspurri Tue, 2020-08-18 09:57 |
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protein interface design by Negarsardar » Tue, 2019-05-28 07:04 |
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1,174 |
by Negarsardar Thu, 2019-05-30 23:46 |
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How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure? by Sunyp_IM » Sun, 2020-11-08 08:07 |
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1,180 |
by Brahm Yachnin Wed, 2020-11-18 17:21 |
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UnfoldedStateEnergyCalculator MPI Error by colin.walsh.brown » Mon, 2017-11-13 09:43 |
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1,180 |
by smlewis Mon, 2017-11-13 10:43 |
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Choosing weight file for interface design? by johnnytam100 » Tue, 2019-05-07 00:47 |
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1,189 |
by johnnytam100 Tue, 2019-05-21 22:33 |
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"Make_fragments.pl" can't connect to dependencies links by Corvin » Wed, 2019-09-04 23:54 |
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1,189 |
by Corvin Thu, 2019-10-10 01:12 |
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ddG calculations to study point mutations by N.Chopra » Fri, 2018-12-07 12:36 |
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1,190 |
by jeliazkov Fri, 2018-12-07 12:51 |
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Template/Input length mismatch error during RosettaCM by marinok » Mon, 2020-05-04 13:12 |
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1,190 |
by marinok Mon, 2020-05-11 12:48 |
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Enzyme Design FlexBB Protocol Bug: DNA/RNA handling by kettner » Fri, 2019-06-14 14:16 |
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1,195 |
by rmoretti Mon, 2019-06-24 13:46 |
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ddg_monomer: if MPI executable is reproducible and efficient? by lanselibai » Sun, 2015-01-11 09:48 |
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1,197 |
by lanselibai Sun, 2015-01-11 10:50 |
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Model monomer to fit cryo density map of a filament by BuddySphinx » Wed, 2018-12-12 18:58 |
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1,205 |
by BuddySphinx Sun, 2018-12-30 16:49 |
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Error Interface analyser by jrcf » Thu, 2017-06-22 12:55 |
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1,206 |
by smlewis Thu, 2017-06-22 13:31 |
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MPdocking I_sc by jrcf » Mon, 2017-07-31 16:10 |
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1,208 |
by rmoretti Thu, 2017-08-03 09:29 |
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Repeatability of DDG calculation by jennifer » Wed, 2015-04-08 05:29 |
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1,210 |
by jennifer Wed, 2015-04-08 05:29 |
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Calbur vs Energy Based Clustering by Swillard » Sun, 2018-07-01 13:24 |
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1,213 |
by rmoretti Fri, 2018-08-03 08:26 |
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score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059' by sn » Fri, 2017-03-24 12:26 |
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1,215 |
by rmoretti Fri, 2017-03-24 13:39 |
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Mutating phosphorylated residues to "canonical" residues and vice versa by ValentinaSora » Mon, 2019-05-20 05:58 |
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1,229 |
by rmoretti Wed, 2019-07-10 09:22 |
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Rosetta failed in making score.fsc by josdee » Sun, 2017-02-05 21:58 |
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1,231 |
by smlewis Mon, 2017-02-06 06:57 |
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Pepspec options by shaunmk » Mon, 2015-04-27 02:33 |
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1,231 |
by shaunmk Mon, 2015-04-27 02:33 |
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ArchiveManager -- spinning down by Marius1987 » Fri, 2016-12-23 03:10 |
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1,232 |
by smlewis Fri, 2016-12-23 07:04 |
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Does it make sense if I do backrub after sequence design? by johnnytam100 » Thu, 2019-08-15 05:15 |
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1,232 |
by johnnytam100 Fri, 2019-08-16 00:20 |
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Write error during saving of PDB-file after working with it in the Rosetta through Unix terminal by Corvin » Thu, 2019-04-25 01:20 |
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1,232 |
by Corvin Wed, 2019-06-12 00:04 |
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Place ligand in a pocket by sn » Fri, 2017-09-15 12:53 |
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1,234 |
by rmoretti Fri, 2017-09-15 13:11 |
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FloppyTail options error by DmitriiN » Fri, 2016-11-11 02:54 |
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1,239 |
by smlewis Fri, 2016-11-11 08:33 |
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Using different number of 9-mers (UPDATED) by JadAbbass » Mon, 2017-08-28 07:20 |
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1,245 |
by rmoretti Mon, 2017-09-04 10:33 |
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Speed problem when running RosettaLigand ligand docking by Nicole Deng » Tue, 2019-10-08 04:29 |
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1,249 |
by Nicole Deng Tue, 2020-11-03 19:07 |
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Membrane protein protocol on PyRosetta by jlapin » Sat, 2018-07-28 14:41 |
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1,255 |
by jlapin Wed, 2018-08-01 07:15 |
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Alanine Scanning for 1 Protein (no interface) by mags33 » Fri, 2019-10-25 10:08 |
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1,260 |
by mags33 Wed, 2019-11-06 09:35 |
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Rosetta make_fragments.pl error? by Danielsebas » Mon, 2019-09-02 07:51 |
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1,261 |
by Danielsebas Thu, 2019-09-05 03:35 |
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Helical Symmetry Axis by Sandy » Tue, 2016-05-31 18:48 |
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1,262 |
by Sandy Tue, 2016-05-31 18:48 |
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Model two domain protein by sn » Sat, 2017-05-06 13:21 |
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1,262 |
by rmoretti Mon, 2017-05-15 08:54 |
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Can I believe the antibody design result? by Sunyp_IM » Mon, 2020-11-30 03:29 |
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1,262 |
by jadolfbr Sun, 2020-12-06 17:41 |
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Domain insertion with Non-CAA by mwfranklin » Mon, 2017-01-16 12:30 |
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1,268 |
by mwfranklin Mon, 2017-01-16 12:30 |
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Scoring functions: talaris2013 incompatible versions by Smbat » Tue, 2020-10-13 06:18 |
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1,268 |
by Astghik Thu, 2020-10-15 00:48 |
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How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior ) by asbelx » Sat, 2019-06-08 00:07 |
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1,271 |
by happycaapi Tue, 2021-06-29 15:35 |
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Structure prediction using true distance and angle constraint by maruhuang » Wed, 2019-08-21 02:29 |
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1,281 |
by maruhuang Thu, 2019-09-26 18:52 |
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Design with limited number of aminoacids at given position by sdh_h » Sun, 2016-12-04 03:44 |
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1,285 |
by smlewis Thu, 2016-12-08 15:50 |
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Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0. by daniloboskovic » Fri, 2019-11-08 08:24 |
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1,286 |
by daniloboskovic Fri, 2019-11-08 08:27 |
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Fast relax not working by eyong123 » Fri, 2017-04-21 06:06 |
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1,286 |
by rmoretti Fri, 2017-04-21 07:41 |
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Docking prepack vs. relax by David Weis » Tue, 2017-02-21 05:37 |
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1,297 |
by smlewis Tue, 2017-02-21 07:58 |
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Packstat application output by Vedasheersh » Mon, 2017-07-03 02:45 |
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1,300 |
by rmoretti Mon, 2017-07-03 09:17 |
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pepspec anchor dock by Astghik » Tue, 2020-10-20 05:31 |
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1,305 |
by Pappmaschee Thu, 2020-12-17 02:24 |
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Generating non-redundat dataset for loop models by dario.corrada » Wed, 2016-03-09 03:00 |
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1,309 |
by smlewis Wed, 2016-03-09 04:11 |
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AbinitioRelax - Error with flags by jmschu » Wed, 2018-11-21 17:36 |
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1,311 |
by rmoretti Fri, 2018-11-23 07:59 |
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Chemically bound ligand connection error by tsztain » Tue, 2019-01-01 18:40 |
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1,312 |
by tsztain Mon, 2019-02-18 09:55 |
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A problem with "make_fragments.pl" script dependencies by Corvin » Fri, 2019-08-16 04:30 |
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1,321 |
by Corvin Tue, 2019-08-27 00:46 |
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How to correctly incorporate constraint information into ab initio structure prediction? by johnnytam100 » Tue, 2019-02-19 03:13 |
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1,325 |
by johnnytam100 Fri, 2019-03-01 01:36 |
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heads up for constraints using GAUSSIANFUNC by attesor » Thu, 2015-10-22 07:30 |
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1,327 |
by smlewis Thu, 2015-10-22 08:04 |
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Files for Spatial Constraints by Derek » Tue, 2016-04-12 01:00 |
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1,331 |
by Derek Wed, 2016-04-27 01:31 |
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Protein/Protein Ddg demo: How to write predicted mutant structures? by cossio » Wed, 2015-11-04 20:14 |
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1,348 |
by rmoretti Tue, 2015-11-10 11:10 |
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how to make "static" built binaries use multiple cpus like "mpi"? by Danielsebas » Wed, 2019-09-18 06:41 |
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1,349 |
by rmoretti Wed, 2019-09-18 10:21 |
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cartfrag_overlap error while running hybridize protocol by sn » Thu, 2017-12-21 10:24 |
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1,349 |
by dnamkr Mon, 2019-12-30 11:43 |
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fragment_picker bug by David Hoover » Wed, 2012-02-29 11:43 |
0 |
1,351 |
by David Hoover Mon, 2014-04-21 06:47 |
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Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans? by ccottrell » Tue, 2020-05-05 20:30 |
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1,353 |
by jadolfbr Wed, 2020-05-06 11:37 |
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No output with docking full protocol by JulienO » Mon, 2016-05-30 02:16 |
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1,353 |
by rmoretti Fri, 2016-06-17 10:24 |
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antibody_numbering_converter cannot recognize the IMGT scheme by cryosky » Sat, 2020-02-29 23:12 |
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1,369 |
by jadolfbr Sun, 2020-03-01 14:54 |
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Options "-out:prefix" didn't work by maruhuang » Tue, 2019-09-10 05:42 |
4 |
1,374 |
by danpf Fri, 2020-02-21 18:32 |
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RosettaAntibodyDesign: How can I run the protocol without allowing design? by brspurri » Tue, 2020-05-26 08:12 |
5 |
1,376 |
by brspurri Wed, 2020-06-03 13:20 |
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Rosetta_scripts error, Got some signal... It is:6 by jhm13c » Fri, 2017-04-14 14:05 |
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1,382 |
by rmoretti Sat, 2017-04-15 13:30 |
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weights for pH_protocol by fmerino » Wed, 2017-04-26 07:14 |
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1,384 |
by rmoretti Thu, 2017-04-27 07:10 |
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Can't find RosettaRemodel in Rosetta 3.4 by petrikigor » Mon, 2012-12-03 13:56 |
0 |
1,395 |
by petrikigor Mon, 2014-04-21 06:47 |
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RosettaCM hybridize mover error after fragment picking by amorin » Thu, 2018-09-06 11:03 |
2 |
1,396 |
by dnamkr Thu, 2019-12-26 10:22 |
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Segmentation Fault during prepacking by Sunyp_IM » Fri, 2020-06-12 11:24 |
4 |
1,401 |
by Sunyp_IM Thu, 2020-07-09 18:40 |
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