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Rosetta 3 - Applications

Topic / Topic starter Replies Viewssort descending Last post
Normal topic Symmetric assembly and output reconstruction
by felipet » Wed, 2014-07-02 10:23
0
1,144 by felipet
Wed, 2014-07-02 10:23
Normal topic nstruct vs. trials?
by chrisHKL » Mon, 2020-03-02 13:22
2
1,150 by chrisHKL
Wed, 2020-03-04 10:49
Normal topic Number of max allowed mutations from WT sequence
by mouung » Fri, 2020-09-04 02:33
2
1,150 by amorin
Fri, 2021-02-12 08:53
Normal topic Rosetta Ligand Ensemble
by malfonsoprieto » Wed, 2021-05-26 10:21
3
1,151 by vizcarra
Thu, 2021-08-26 10:16
Normal topic BUG REPORT: Remodel Resfile ERROR: LEU was added more than once?
by daniloboskovic » Wed, 2020-04-29 01:17
2
1,158 by daniloboskovic
Wed, 2020-04-29 05:51
Normal topic Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1
by cm21 » Wed, 2020-05-20 08:55
2
1,164 by cm21
Wed, 2020-05-20 11:22
Normal topic Protein Protein Docking with Constraints
by ajaniharesh » Wed, 2019-04-10 07:26
1
1,165 by rmoretti
Thu, 2019-05-09 15:40
Normal topic "core.kinematics.FoldTree" error upon running RAbD
by Sunyp_IM » Fri, 2020-06-26 17:27
2
1,166 by Sunyp_IM
Fri, 2020-06-26 20:57
Normal topic Homology Modeling-no PDB output
by jlawrie » Wed, 2020-08-12 06:30
2
1,167 by jlawrie
Wed, 2020-08-12 08:56
Normal topic Comparative modeling using a two chained template for a one chain structure
by ahmadkhalifa » Mon, 2017-12-18 11:00
1
1,170 by rmoretti
Mon, 2018-01-15 16:14
Normal topic minimize_with_cst and convert_to_cst_file for ddG_monomer issues/confusion
by Kharlamov1317a » Mon, 2020-09-21 08:46
1
1,173 by Kharlamov1317a
Wed, 2020-10-07 08:26
Normal topic Error with Formatdb of legacy blast when running "install_dependencies.pl"?
by Danielsebas » Mon, 2019-09-16 09:30
2
1,178 by Danielsebas
Tue, 2019-09-17 01:03
Normal topic Rosetta scripts crash in CM workflow
by jlburkhead » Tue, 2019-12-03 22:55
1
1,181 by danpf
Fri, 2020-02-21 18:37
Normal topic Rosetta_cm Partial Threading Removing Parts of Sequence
by gszwabowski » Thu, 2019-06-20 12:30
1
1,182 by rmoretti
Mon, 2019-06-24 13:43
Normal topic broker domain insertion
by dhirajks » Sun, 2018-05-06 12:55
1
1,184 by rmoretti
Fri, 2018-05-18 12:28
Normal topic can anyone help me correct this script to do alanine scanning
by xinmiaohe » Mon, 2019-08-26 17:23
1
1,186 by xinmiaohe
Mon, 2019-08-26 18:16
Normal topic Coding denovo prediction from density maps in PyRosetta
by ahmadkhalifa » Tue, 2018-04-10 11:43
1
1,190 by rmoretti
Tue, 2018-04-10 15:29
Normal topic Thread target sequence
by duz » Thu, 2021-04-01 10:09
4
1,192 by duz
Mon, 2021-05-03 07:50
Normal topic output file in ddg calcualtion
by malkeet.singh » Sun, 2017-12-03 07:59
1
1,196 by malkeet.singh
Wed, 2017-12-06 02:02
Normal topic Relax with RDC data gives segmentation fault
by sn » Mon, 2018-07-23 11:39
1
1,196 by rmoretti
Fri, 2018-08-03 07:54
Normal topic Ligand docking cannot open the protein file
by swarekwood » Tue, 2017-10-17 08:17
1
1,197 by rmoretti
Tue, 2017-10-17 09:03
Normal topic Relaxing protein-RNA complexes
by rkirchdo » Fri, 2018-08-03 08:50
1
1,197 by rmoretti
Fri, 2018-08-24 11:28
Normal topic Relax with multiple small molecules
by jharamesh » Sun, 2019-05-26 19:34
1
1,203 by rmoretti
Mon, 2019-06-24 15:19
Normal topic Highly negative total score
by Ruchi_P_Jain » Wed, 2019-04-24 19:55
1
1,215 by nannemdp
Thu, 2019-04-25 07:58
Normal topic change number of output pose files written out (default=50) in ligand docking XML script
by hdelrisco » Fri, 2019-10-18 13:50
2
1,226 by hdelrisco
Fri, 2019-10-18 17:16
Normal topic Docking protein complexes when constrained by oligomer symmetry
by msk » Tue, 2014-06-03 11:09
0
1,227 by msk
Tue, 2014-06-03 11:09
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Mon, 2016-01-04 11:26
0
1,229 by achambe
Mon, 2016-01-04 11:26
Normal topic Question on Designing with NCAAs
by salvatta » Mon, 2018-09-10 10:09
1
1,232 by rmoretti
Thu, 2018-09-20 09:23
Normal topic VH-VL Orientation in antibody
by sujigeorge1979 » Mon, 2019-06-17 01:23
1
1,232 by jeliazkov
Mon, 2019-06-17 06:03
Normal topic How does the label in pdb files looks like when using ResiduePDBInfoHasLabel?
by johnnytam100 » Fri, 2019-08-16 00:25
1
1,233 by JackMaguire
Fri, 2019-08-16 07:41
Normal topic Any progress on getting intermediate structures during a design?
by broomsday » Mon, 2020-03-16 06:46
2
1,234 by vmulligan
Tue, 2020-03-17 11:35
Normal topic remodel: what are the exact meanings of notations for secondary structure?
by lanselibai » Sat, 2015-01-17 04:53
0
1,235 by lanselibai
Sat, 2015-01-17 07:57
Normal topic Two questions on the RosettaScripts flexbb-interfacedesign.xml
by johnnytam100 » Fri, 2019-03-15 04:54
1
1,239 by rmoretti
Fri, 2019-03-29 09:58
Normal topic ligand docking with MPI
by Ruska322 » Wed, 2019-09-04 03:47
2
1,239 by Ruska322
Fri, 2019-09-06 07:13
Normal topic ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator>
by DGR95 » Fri, 2021-04-16 19:26
4
1,241 by DGR95
Wed, 2021-04-28 16:13
Normal topic The usage of antibody_H3.linuxgccrelease
by Sunyp_IM » Thu, 2020-05-28 22:50
2
1,245 by Sunyp_IM
Thu, 2020-06-04 08:20
Normal topic make_fragments.pl error
by almeida85 » Mon, 2020-08-31 04:39
2
1,263 by almeida85
Tue, 2020-09-01 01:29
Normal topic Surface Docking Crash (continued)
by dkozuch » Tue, 2017-09-12 06:18
1
1,270 by rmoretti
Tue, 2017-10-10 10:08
Normal topic RAbD with N-term,Proline-like ncaa returns segmentation fault during CCDEndsGraftMover
by CordycepsLin » Sun, 2022-02-06 19:09
9
1,271 by CordycepsLin
Wed, 2022-02-09 19:39
Normal topic Rosetta antibody- modeling in the presense of an antigen
by agctomer » Mon, 2021-02-01 03:19
4
1,273 by nannemdp
Wed, 2021-02-03 08:52
Normal topic Finding lowest energy structure among generated structures
by Marius1987 » Sun, 2016-04-10 11:38
0
1,273 by Marius1987
Sun, 2016-04-10 12:09
Normal topic OptimizeMembranePositionMover - This element is not expected
by bjharris » Wed, 2020-07-01 23:21
2
1,274 by bjharris
Thu, 2020-07-02 11:09
Normal topic AddHelixSequenceConstraints Mover
by Negarsardar » Thu, 2019-05-30 03:17
2
1,280 by vmulligan
Thu, 2019-06-13 14:59
Normal topic Is native.pdb necess for fragment_picker?
by ylwang » Thu, 2020-03-12 00:57
2
1,283 by ylwang
Thu, 2020-03-12 20:42
Normal topic De novo water predictions using SPaDES
by MNP1986 » Mon, 2019-03-25 07:53
1
1,284 by matteoferla
Tue, 2020-08-04 09:30
Normal topic Loop modeling/closure for many structures
by sn » Mon, 2017-03-06 11:25
1
1,285 by rmoretti
Mon, 2017-03-06 12:39
Normal topic radius of gyration as constrain
by dhirajks » Sat, 2018-05-05 23:00
1
1,293 by smlewis
Mon, 2018-05-07 11:42
Normal topic RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist.
by kamau » Fri, 2017-12-01 08:42
1
1,296 by kamau
Wed, 2017-12-13 14:31
Normal topic missing atom number 5 atom name CB
by ajaniharesh » Fri, 2019-04-26 12:08
1
1,298 by rmoretti
Fri, 2019-04-26 12:13
Normal topic Problem passing a list of PDB files to minimize_with_cst
by dolevrahat » Sun, 2018-11-18 16:13
1
1,299 by rmoretti
Wed, 2018-11-21 15:31
Normal topic ProteinInterfaceDesign algorithm questions
by tsztain » Mon, 2019-02-18 14:10
1
1,299 by rmoretti
Sun, 2019-08-25 19:15
Normal topic cm_scripts
by sn » Wed, 2018-02-14 11:00
1
1,302 by rmoretti
Wed, 2018-02-21 15:21
Normal topic PEPSPEC
by Neeraj » Wed, 2018-01-03 02:24
1
1,306 by Andre Serobian
Wed, 2020-07-08 04:44
Normal topic Imitating induced fit protocol in SymDock2 without any symmetry constraints
by chenna » Fri, 2020-02-14 01:35
2
1,306 by chenna
Wed, 2020-03-04 03:24
Normal topic Centroid mode minimization
by Martin Floor » Tue, 2020-01-21 07:34
2
1,312 by Martin Floor
Tue, 2020-01-21 11:15
Normal topic RosettaMatch
by xingqing326 » Mon, 2019-07-22 13:14
1
1,315 by rmoretti
Mon, 2019-08-26 12:57
Normal topic Fragment library (vall file) from Robetta?
by alex » Sun, 2017-02-19 08:12
0
1,321 by alex
Sun, 2017-02-19 08:12
Normal topic antibody.linuxgccrelease- output models don't have the same sequence as the input fasta
by agctomer » Thu, 2021-01-21 15:35
4
1,328 by agctomer
Sun, 2021-01-31 01:06
Normal topic Membrane Abinitio modeling
by bharat_46010 » Mon, 2017-03-13 22:39
1
1,329 by benhardy
Wed, 2020-09-30 04:24
Normal topic RosettaCM or FastRelax?
by Tianyang89 » Wed, 2020-09-23 07:46
3
1,330 by danpf
Thu, 2020-09-24 13:44
Normal topic Repeatability of DDG calculation
by jennifer » Wed, 2015-04-08 05:29
0
1,333 by jennifer
Wed, 2015-04-08 05:29
Normal topic Question about fastsaxs and saxs_score
by orionshih » Thu, 2019-06-13 02:30
2
1,339 by orionshih
Wed, 2019-06-26 03:54
Normal topic sequence design to enhance Fc / Fc-g Receptor binding
by jarod » Tue, 2017-05-23 09:00
1
1,340 by jadolfbr
Thu, 2017-06-01 10:00
Normal topic Question about running scallo
by danbo » Mon, 2021-11-29 23:25
8
1,340 by danbo
Wed, 2021-12-22 23:51
Normal topic splitfile.py
by saladi » Fri, 2018-03-30 10:31
1
1,340 by rmoretti
Tue, 2018-04-10 15:34
Normal topic Snugdock_error
by luicui » Thu, 2017-02-09 21:06
1
1,349 by smlewis
Thu, 2017-02-09 21:50
Normal topic ddg_monomer: if MPI executable is reproducible and efficient?
by lanselibai » Sun, 2015-01-11 09:48
0
1,354 by lanselibai
Sun, 2015-01-11 10:50
Normal topic Partial Active Site Design for a Novel Substrate
by Derek » Wed, 2017-05-17 19:41
1
1,357 by rmoretti
Thu, 2017-05-18 13:51
Normal topic Rosetta fragment tools installation error
by Danielsebas » Thu, 2019-08-29 02:17
2
1,364 by Danielsebas
Sun, 2019-09-01 02:38
Normal topic Pepspec options
by shaunmk » Mon, 2015-04-27 02:33
0
1,373 by shaunmk
Mon, 2015-04-27 02:33
Normal topic Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex
by benhardy » Mon, 2020-06-15 09:33
3
1,379 by benhardy
Fri, 2020-06-19 07:55
Normal topic antibody modeling error
by mxp » Mon, 2019-09-16 18:29
2
1,381 by mxp
Mon, 2019-09-23 01:40
Normal topic dssp
by MA » Thu, 2017-10-05 09:34
1
1,382 by rmoretti
Tue, 2017-10-10 09:54
Normal topic Comparative modeling of metalloproteins
by ctqwong » Sun, 2020-07-12 13:51
3
1,385 by ctqwong
Mon, 2020-07-27 01:48
Normal topic blast database error
by jessye » Sun, 2017-12-03 23:59
1
1,390 by smlewis
Mon, 2017-12-04 12:18
Normal topic is it necessary to always run relax before any Rosetta
by mainzer » Fri, 2019-04-12 01:35
1
1,396 by rmoretti
Wed, 2019-07-10 09:47
Normal topic How to run partial_thread in RosettaCM when residure are more than 9999?
by lanselibai » Mon, 2020-05-11 22:43
2
1,397 by lanselibai
Tue, 2020-05-12 20:25
Normal topic Using residue patches in AbinitioRelax
by kent » Fri, 2018-11-02 11:19
1
1,400 by rmoretti
Wed, 2018-11-21 15:40
Normal topic error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease
by xinmiaohe » Thu, 2020-01-30 22:09
1
1,403 by xinmiaohe
Fri, 2020-01-31 08:23
Normal topic Remodel: the pose does not have residue with chain=H, PDBnum=114
by lanselibai » Wed, 2019-12-25 13:35
1
1,408 by lanselibai
Fri, 2019-12-27 09:38
Normal topic "make" error in "pdb2vall/structure_profile_scripts/DEPTH-CLONE-2.8.7"
by Danielsebas » Mon, 2019-09-02 08:14
2
1,413 by Danielsebas
Sun, 2019-09-08 02:08
Normal topic Domain insertion with Non-CAA
by mwfranklin » Mon, 2017-01-16 12:30
0
1,419 by mwfranklin
Mon, 2017-01-16 12:30
Normal topic Helical Symmetry Axis
by Sandy » Tue, 2016-05-31 18:48
0
1,421 by Sandy
Tue, 2016-05-31 18:48
Normal topic reporting bugs? (erraser in rosetta 3.10)
by meyer » Fri, 2018-12-14 09:40
2
1,428 by everyday847
Fri, 2019-03-29 13:13
Normal topic Building loop extensions in a membrane protein with Remodel
by benhardy » Tue, 2020-06-02 08:21
2
1,429 by benhardy
Sun, 2020-09-20 11:15
Normal topic Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2
by AJVincelli » Sat, 2018-07-14 13:14
1
1,431 by AJVincelli
Sun, 2018-11-25 11:29
Normal topic Enzyme Design FlexBB Protocol Bug: DNA/RNA handling
by kettner » Fri, 2019-06-14 14:16
1
1,433 by rmoretti
Mon, 2019-06-24 13:46
Normal topic What is a rational minimal value for the "-nstruct" option
by Sunyp_IM » Fri, 2020-05-22 01:28
3
1,435 by nannemdp
Sun, 2020-05-24 14:46
Normal topic Error Interface analyser
by jrcf » Thu, 2017-06-22 12:55
1
1,435 by smlewis
Thu, 2017-06-22 13:31
Normal topic ArchiveManager -- spinning down
by Marius1987 » Fri, 2016-12-23 03:10
1
1,438 by smlewis
Fri, 2016-12-23 07:04
Normal topic score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059'
by sn » Fri, 2017-03-24 12:26
1
1,439 by rmoretti
Fri, 2017-03-24 13:39
Normal topic docking parse error
by dave » Tue, 2018-12-04 08:41
1
1,450 by rmoretti
Tue, 2018-12-04 08:55
Normal topic De novo structure building with medium resolution map
by BuddySphinx » Tue, 2019-07-02 09:07
2
1,453 by BuddySphinx
Tue, 2019-07-02 12:03
Normal topic Calbur vs Energy Based Clustering
by Swillard » Sun, 2018-07-01 13:24
1
1,454 by rmoretti
Fri, 2018-08-03 08:26
Normal topic MPdocking I_sc
by jrcf » Mon, 2017-07-31 16:10
1
1,457 by rmoretti
Thu, 2017-08-03 09:29
Normal topic UnfoldedStateEnergyCalculator MPI Error
by colin.walsh.brown » Mon, 2017-11-13 09:43
1
1,463 by smlewis
Mon, 2017-11-13 10:43
Normal topic FloppyTail options error
by DmitriiN » Fri, 2016-11-11 02:54
1
1,467 by smlewis
Fri, 2016-11-11 08:33
Normal topic Prevention of the negatively charged Nitrogen protonation by coupled_moves
by Corvin » Wed, 2020-11-18 02:56
4
1,474 by Corvin
Wed, 2020-11-25 02:58
Normal topic GrowLigand
by allan.ferrari » Sat, 2019-10-19 05:32
2
1,479 by allan.ferrari
Tue, 2019-11-05 16:52
Normal topic trRosetta protocol Segmentation Fault
by nc-ring » Wed, 2021-04-28 11:57
5
1,485 by nc-ring
Tue, 2021-05-04 12:26
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