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Rosetta 3 - Applications
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Relax with multiple small molecules by jharamesh » Sun, 2019-05-26 19:34 |
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1,094 |
by rmoretti Mon, 2019-06-24 15:19 |
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ligand docking with MPI by Ruska322 » Wed, 2019-09-04 03:47 |
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1,096 |
by Ruska322 Fri, 2019-09-06 07:13 |
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The usage of antibody_H3.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 22:50 |
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1,098 |
by Sunyp_IM Thu, 2020-06-04 08:20 |
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VH-VL Orientation in antibody by sujigeorge1979 » Mon, 2019-06-17 01:23 |
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1,101 |
by jeliazkov Mon, 2019-06-17 06:03 |
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output file in ddg calcualtion by malkeet.singh » Sun, 2017-12-03 07:59 |
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1,102 |
by malkeet.singh Wed, 2017-12-06 02:02 |
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How does the label in pdb files looks like when using ResiduePDBInfoHasLabel? by johnnytam100 » Fri, 2019-08-16 00:25 |
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1,103 |
by JackMaguire Fri, 2019-08-16 07:41 |
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Highly negative total score by Ruchi_P_Jain » Wed, 2019-04-24 19:55 |
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1,104 |
by nannemdp Thu, 2019-04-25 07:58 |
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Question on Designing with NCAAs by salvatta » Mon, 2018-09-10 10:09 |
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1,106 |
by rmoretti Thu, 2018-09-20 09:23 |
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trRosetta protocol Segmentation Fault by nc-ring » Wed, 2021-04-28 11:57 |
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1,121 |
by nc-ring Tue, 2021-05-04 12:26 |
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Two questions on the RosettaScripts flexbb-interfacedesign.xml by johnnytam100 » Fri, 2019-03-15 04:54 |
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1,127 |
by rmoretti Fri, 2019-03-29 09:58 |
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AddHelixSequenceConstraints Mover by Negarsardar » Thu, 2019-05-30 03:17 |
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1,131 |
by vmulligan Thu, 2019-06-13 14:59 |
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RosettaCM or FastRelax? by Tianyang89 » Wed, 2020-09-23 07:46 |
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1,134 |
by danpf Thu, 2020-09-24 13:44 |
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Is native.pdb necess for fragment_picker？ by ylwang » Thu, 2020-03-12 00:57 |
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1,135 |
by ylwang Thu, 2020-03-12 20:42 |
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Score Functions for Ligand-protein Docking by ziruiw » Sun, 2021-04-25 13:41 |
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1,148 |
by ziruiw Fri, 2021-04-30 12:01 |
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De novo water predictions using SPaDES by MNP1986 » Mon, 2019-03-25 07:53 |
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1,149 |
by matteoferla Tue, 2020-08-04 09:30 |
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Imitating induced fit protocol in SymDock2 without any symmetry constraints by chenna » Fri, 2020-02-14 01:35 |
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1,150 |
by chenna Wed, 2020-03-04 03:24 |
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Centroid mode minimization by Martin Floor » Tue, 2020-01-21 07:34 |
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1,154 |
by Martin Floor Tue, 2020-01-21 11:15 |
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missing atom number 5 atom name CB by ajaniharesh » Fri, 2019-04-26 12:08 |
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1,155 |
by rmoretti Fri, 2019-04-26 12:13 |
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Surface Docking Crash (continued) by dkozuch » Tue, 2017-09-12 06:18 |
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1,162 |
by rmoretti Tue, 2017-10-10 10:08 |
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Problem passing a list of PDB files to minimize_with_cst by dolevrahat » Sun, 2018-11-18 16:13 |
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1,168 |
by rmoretti Wed, 2018-11-21 15:31 |
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ProteinInterfaceDesign algorithm questions by tsztain » Mon, 2019-02-18 14:10 |
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1,168 |
by rmoretti Sun, 2019-08-25 19:15 |
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Fusing C-terminal or N-terminal segments onto proteins using Remodel by achambe » Mon, 2016-01-04 11:26 |
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1,172 |
by achambe Mon, 2016-01-04 11:26 |
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Docking protein complexes when constrained by oligomer symmetry by msk » Tue, 2014-06-03 11:09 |
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1,173 |
by msk Tue, 2014-06-03 11:09 |
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remodel: what are the exact meanings of notations for secondary structure? by lanselibai » Sat, 2015-01-17 04:53 |
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1,179 |
by lanselibai Sat, 2015-01-17 07:57 |
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RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist. by kamau » Fri, 2017-12-01 08:42 |
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1,186 |
by kamau Wed, 2017-12-13 14:31 |
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RosettaMatch by xingqing326 » Mon, 2019-07-22 13:14 |
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1,187 |
by rmoretti Mon, 2019-08-26 12:57 |
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Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex by benhardy » Mon, 2020-06-15 09:33 |
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1,187 |
by benhardy Fri, 2020-06-19 07:55 |
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Question about fastsaxs and saxs_score by orionshih » Thu, 2019-06-13 02:30 |
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1,189 |
by orionshih Wed, 2019-06-26 03:54 |
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Loop modeling/closure for many structures by sn » Mon, 2017-03-06 11:25 |
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1,194 |
by rmoretti Mon, 2017-03-06 12:39 |
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radius of gyration as constrain by dhirajks » Sat, 2018-05-05 23:00 |
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1,194 |
by smlewis Mon, 2018-05-07 11:42 |
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PEPSPEC by Neeraj » Wed, 2018-01-03 02:24 |
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1,195 |
by Andre Serobian Wed, 2020-07-08 04:44 |
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cm_scripts by sn » Wed, 2018-02-14 11:00 |
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1,200 |
by rmoretti Wed, 2018-02-21 15:21 |
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Finding lowest energy structure among generated structures by Marius1987 » Sun, 2016-04-10 11:38 |
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1,204 |
by Marius1987 Sun, 2016-04-10 12:09 |
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Comparative modeling of metalloproteins by ctqwong » Sun, 2020-07-12 13:51 |
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1,208 |
by ctqwong Mon, 2020-07-27 01:48 |
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antibody modeling error by mxp » Mon, 2019-09-16 18:29 |
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1,210 |
by mxp Mon, 2019-09-23 01:40 |
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Rosetta fragment tools installation error by Danielsebas » Thu, 2019-08-29 02:17 |
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1,216 |
by Danielsebas Sun, 2019-09-01 02:38 |
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Remodel: the pose does not have residue with chain=H, PDBnum=114 by lanselibai » Wed, 2019-12-25 13:35 |
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1,216 |
by lanselibai Fri, 2019-12-27 09:38 |
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splitfile.py by saladi » Fri, 2018-03-30 10:31 |
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1,226 |
by rmoretti Tue, 2018-04-10 15:34 |
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"make" error in "pdb2vall/structure_profile_scripts/DEPTH-CLONE-2.8.7" by Danielsebas » Mon, 2019-09-02 08:14 |
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1,237 |
by Danielsebas Sun, 2019-09-08 02:08 |
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How to run partial_thread in RosettaCM when residure are more than 9999? by lanselibai » Mon, 2020-05-11 22:43 |
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1,238 |
by lanselibai Tue, 2020-05-12 20:25 |
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error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease by xinmiaohe » Thu, 2020-01-30 22:09 |
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1,240 |
by xinmiaohe Fri, 2020-01-31 08:23 |
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Prevention of the negatively charged Nitrogen protonation by coupled_moves by Corvin » Wed, 2020-11-18 02:56 |
4 |
1,244 |
by Corvin Wed, 2020-11-25 02:58 |
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issues about cstfile in RosettaMatch by Nicole Deng » Fri, 2020-12-18 05:44 |
3 |
1,244 |
by He Xiao Sun, 2021-04-11 19:29 |
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Fragment library (vall file) from Robetta? by alex » Sun, 2017-02-19 08:12 |
0 |
1,246 |
by alex Sun, 2017-02-19 08:12 |
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sequence design to enhance Fc / Fc-g Receptor binding by jarod » Tue, 2017-05-23 09:00 |
1 |
1,248 |
by jadolfbr Thu, 2017-06-01 10:00 |
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is it necessary to always run relax before any Rosetta by mainzer » Fri, 2019-04-12 01:35 |
1 |
1,249 |
by rmoretti Wed, 2019-07-10 09:47 |
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Partial Active Site Design for a Novel Substrate by Derek » Wed, 2017-05-17 19:41 |
1 |
1,249 |
by rmoretti Thu, 2017-05-18 13:51 |
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Membrane Abinitio modeling by bharat_46010 » Mon, 2017-03-13 22:39 |
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1,250 |
by benhardy Wed, 2020-09-30 04:24 |
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Snugdock_error by luicui » Thu, 2017-02-09 21:06 |
1 |
1,256 |
by smlewis Thu, 2017-02-09 21:50 |
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What is a rational minimal value for the "-nstruct" option by Sunyp_IM » Fri, 2020-05-22 01:28 |
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1,260 |
by nannemdp Sun, 2020-05-24 14:46 |
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Building loop extensions in a membrane protein with Remodel by benhardy » Tue, 2020-06-02 08:21 |
2 |
1,263 |
by benhardy Sun, 2020-09-20 11:15 |
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blast database error by jessye » Sun, 2017-12-03 23:59 |
1 |
1,263 |
by smlewis Mon, 2017-12-04 12:18 |
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relax.linuxgccrelease in multiple processors by jpfuenzalidawx » Thu, 2021-01-14 14:07 |
5 |
1,270 |
by jadolfbr Fri, 2021-01-15 08:06 |
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dssp by MA » Thu, 2017-10-05 09:34 |
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1,275 |
by rmoretti Tue, 2017-10-10 09:54 |
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Using residue patches in AbinitioRelax by kent » Fri, 2018-11-02 11:19 |
1 |
1,279 |
by rmoretti Wed, 2018-11-21 15:40 |
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Repeatability of DDG calculation by jennifer » Wed, 2015-04-08 05:29 |
0 |
1,280 |
by jennifer Wed, 2015-04-08 05:29 |
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ddg_monomer: if MPI executable is reproducible and efficient? by lanselibai » Sun, 2015-01-11 09:48 |
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1,280 |
by lanselibai Sun, 2015-01-11 10:50 |
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De novo structure building with medium resolution map by BuddySphinx » Tue, 2019-07-02 09:07 |
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1,285 |
by BuddySphinx Tue, 2019-07-02 12:03 |
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reporting bugs? (erraser in rosetta 3.10) by meyer » Fri, 2018-12-14 09:40 |
2 |
1,286 |
by everyday847 Fri, 2019-03-29 13:13 |
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RosettaScript Segmentation Fault (crash log attached) by chrisHKL » Thu, 2020-03-05 07:21 |
2 |
1,292 |
by chrisHKL Thu, 2020-03-05 09:11 |
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relax and movemap by Alison_Yajie » Wed, 2020-05-20 21:27 |
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1,293 |
by smlewis Thu, 2020-05-21 21:05 |
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Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2 by AJVincelli » Sat, 2018-07-14 13:14 |
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1,300 |
by AJVincelli Sun, 2018-11-25 11:29 |
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RosettaCM: An internal error has occurred when "Running the Hybridize mover" by haom » Mon, 2020-06-15 05:56 |
4 |
1,301 |
by haom Tue, 2020-06-16 05:55 |
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Pepspec options by shaunmk » Mon, 2015-04-27 02:33 |
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1,312 |
by shaunmk Mon, 2015-04-27 02:33 |
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"Install_dependencies.pl" gives "Aborted" when downloading "nr" database? by Danielsebas » Sat, 2019-09-14 08:53 |
3 |
1,316 |
by danpf Mon, 2019-09-16 09:51 |
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docking parse error by dave » Tue, 2018-12-04 08:41 |
1 |
1,317 |
by rmoretti Tue, 2018-12-04 08:55 |
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GrowLigand by allan.ferrari » Sat, 2019-10-19 05:32 |
2 |
1,330 |
by allan.ferrari Tue, 2019-11-05 16:52 |
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Error Interface analyser by jrcf » Thu, 2017-06-22 12:55 |
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1,330 |
by smlewis Thu, 2017-06-22 13:31 |
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clean_pdb not working by Andre Serobian » Thu, 2020-07-23 04:48 |
3 |
1,334 |
by rmoretti Tue, 2020-07-28 08:24 |
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Enzyme Design FlexBB Protocol Bug: DNA/RNA handling by kettner » Fri, 2019-06-14 14:16 |
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1,336 |
by rmoretti Mon, 2019-06-24 13:46 |
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score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059' by sn » Fri, 2017-03-24 12:26 |
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1,337 |
by rmoretti Fri, 2017-03-24 13:39 |
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ArchiveManager -- spinning down by Marius1987 » Fri, 2016-12-23 03:10 |
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1,339 |
by smlewis Fri, 2016-12-23 07:04 |
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MPdocking I_sc by jrcf » Mon, 2017-07-31 16:10 |
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1,341 |
by rmoretti Thu, 2017-08-03 09:29 |
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Helical Symmetry Axis by Sandy » Tue, 2016-05-31 18:48 |
0 |
1,344 |
by Sandy Tue, 2016-05-31 18:48 |
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UnfoldedStateEnergyCalculator MPI Error by colin.walsh.brown » Mon, 2017-11-13 09:43 |
1 |
1,345 |
by smlewis Mon, 2017-11-13 10:43 |
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Calbur vs Energy Based Clustering by Swillard » Sun, 2018-07-01 13:24 |
1 |
1,352 |
by rmoretti Fri, 2018-08-03 08:26 |
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Domain insertion with Non-CAA by mwfranklin » Mon, 2017-01-16 12:30 |
0 |
1,355 |
by mwfranklin Mon, 2017-01-16 12:30 |
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Rosetta failed in making score.fsc by josdee » Sun, 2017-02-05 21:58 |
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1,358 |
by smlewis Mon, 2017-02-06 06:57 |
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Trouble running MPI docking protocol, please help! by Rob_Barringer » Tue, 2020-08-18 06:40 |
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1,360 |
by Rob_Barringer Fri, 2020-09-25 05:45 |
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protein interface design by Negarsardar » Tue, 2019-05-28 07:04 |
2 |
1,361 |
by Negarsardar Thu, 2019-05-30 23:46 |
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Transmembrane helix fold-and-dock? by sarah_b » Tue, 2020-05-12 02:09 |
3 |
1,361 |
by jkleman Tue, 2020-05-19 15:02 |
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Model monomer to fit cryo density map of a filament by BuddySphinx » Wed, 2018-12-12 18:58 |
2 |
1,365 |
by BuddySphinx Sun, 2018-12-30 16:49 |
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FloppyTail options error by DmitriiN » Fri, 2016-11-11 02:54 |
1 |
1,366 |
by smlewis Fri, 2016-11-11 08:33 |
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Can't generate a cst file to use with ddg_monomer application by ctqwong » Sat, 2021-03-13 03:53 |
6 |
1,369 |
by ctqwong Thu, 2021-03-18 02:04 |
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ligand_docking_error by Alison_Yajie » Mon, 2020-04-20 12:27 |
3 |
1,370 |
by YuFei Sat, 2020-05-30 00:12 |
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Using different number of 9-mers (UPDATED) by JadAbbass » Mon, 2017-08-28 07:20 |
1 |
1,378 |
by rmoretti Mon, 2017-09-04 10:33 |
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Choosing weight file for interface design? by johnnytam100 » Tue, 2019-05-07 00:47 |
2 |
1,383 |
by johnnytam100 Tue, 2019-05-21 22:33 |
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ddG calculations to study point mutations by N.Chopra » Fri, 2018-12-07 12:36 |
1 |
1,383 |
by jeliazkov Fri, 2018-12-07 12:51 |
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Place ligand in a pocket by sn » Fri, 2017-09-15 12:53 |
1 |
1,383 |
by rmoretti Fri, 2017-09-15 13:11 |
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Can rosetta generate a centroid model based on the rna sequence? by yels » Fri, 2021-03-26 04:06 |
7 |
1,388 |
by yels Wed, 2021-03-31 18:31 |
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Model two domain protein by sn » Sat, 2017-05-06 13:21 |
1 |
1,404 |
by rmoretti Mon, 2017-05-15 08:54 |
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When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error by Martin Floor » Thu, 2020-09-17 06:01 |
4 |
1,412 |
by Martin Floor Tue, 2020-09-22 00:48 |
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Generating non-redundat dataset for loop models by dario.corrada » Wed, 2016-03-09 03:00 |
1 |
1,417 |
by smlewis Wed, 2016-03-09 04:11 |
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"Make_fragments.pl" can't connect to dependencies links by Corvin » Wed, 2019-09-04 23:54 |
2 |
1,417 |
by Corvin Thu, 2019-10-10 01:12 |
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Design with limited number of aminoacids at given position by sdh_h » Sun, 2016-12-04 03:44 |
1 |
1,419 |
by smlewis Thu, 2016-12-08 15:50 |
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Fast relax not working by eyong123 » Fri, 2017-04-21 06:06 |
1 |
1,427 |
by rmoretti Fri, 2017-04-21 07:41 |
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Filter for fixed-bb design using RosettaScript? by chrisHKL » Fri, 2020-02-28 19:47 |
4 |
1,433 |
by vmulligan Mon, 2020-03-02 13:40 |
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Docking prepack vs. relax by David Weis » Tue, 2017-02-21 05:37 |
1 |
1,437 |
by smlewis Tue, 2017-02-21 07:58 |
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Mutating phosphorylated residues to "canonical" residues and vice versa by ValentinaSora » Mon, 2019-05-20 05:58 |
1 |
1,438 |
by rmoretti Wed, 2019-07-10 09:22 |
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Speed problem when running RosettaLigand ligand docking by Nicole Deng » Tue, 2019-10-08 04:29 |
2 |
1,439 |
by Nicole Deng Tue, 2020-11-03 19:07 |
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