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Rosetta 3 - Applications
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nstruct vs. trials? by chrisHKL » Mon, 2020-03-02 13:22 |
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1,273 |
by chrisHKL Wed, 2020-03-04 10:49 |
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Docking-I_sc values do not correlate by jlawrie » Wed, 2020-08-12 08:08 |
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1,274 |
by jlawrie Wed, 2020-08-12 08:57 |
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Coding denovo prediction from density maps in PyRosetta by ahmadkhalifa » Tue, 2018-04-10 11:43 |
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1,274 |
by rmoretti Tue, 2018-04-10 15:29 |
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Modelling temperature dependent RNA structures by tuleshwori » Tue, 2020-05-19 01:16 |
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1,276 |
by tuleshwori Thu, 2020-05-21 02:08 |
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broker domain insertion by dhirajks » Sun, 2018-05-06 12:55 |
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1,276 |
by rmoretti Fri, 2018-05-18 12:28 |
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Rosetta scripts crash in CM workflow by jlburkhead » Tue, 2019-12-03 22:55 |
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1,276 |
by danpf Fri, 2020-02-21 18:37 |
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Number of max allowed mutations from WT sequence by mouung » Fri, 2020-09-04 02:33 |
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1,278 |
by amorin Fri, 2021-02-12 08:53 |
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RNA modeling with step wise Monte Carlo error by szcshr123 » Mon, 2020-12-07 18:08 |
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1,280 |
by everyday847 Wed, 2020-12-09 21:46 |
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output file in ddg calcualtion by malkeet.singh » Sun, 2017-12-03 07:59 |
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1,281 |
by malkeet.singh Wed, 2017-12-06 02:02 |
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Comparative modeling using a two chained template for a one chain structure by ahmadkhalifa » Mon, 2017-12-18 11:00 |
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1,286 |
by rmoretti Mon, 2018-01-15 16:14 |
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Protein Protein Docking with Constraints by ajaniharesh » Wed, 2019-04-10 07:26 |
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1,287 |
by rmoretti Thu, 2019-05-09 15:40 |
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Ligand docking cannot open the protein file by swarekwood » Tue, 2017-10-17 08:17 |
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1,289 |
by rmoretti Tue, 2017-10-17 09:03 |
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can anyone help me correct this script to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:23 |
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1,289 |
by xinmiaohe Mon, 2019-08-26 18:16 |
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not knowing which one of three ways to run rosettascript by xinmiaohe » Tue, 2020-10-13 13:52 |
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1,291 |
by xinmiaohe Mon, 2020-10-19 13:18 |
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Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1 by cm21 » Wed, 2020-05-20 08:55 |
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1,291 |
by cm21 Wed, 2020-05-20 11:22 |
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Relax with RDC data gives segmentation fault by sn » Mon, 2018-07-23 11:39 |
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1,292 |
by rmoretti Fri, 2018-08-03 07:54 |
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Rosetta_cm Partial Threading Removing Parts of Sequence by gszwabowski » Thu, 2019-06-20 12:30 |
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1,294 |
by rmoretti Mon, 2019-06-24 13:43 |
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Homology Modeling-no PDB output by jlawrie » Wed, 2020-08-12 06:30 |
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1,294 |
by jlawrie Wed, 2020-08-12 08:56 |
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Relaxing protein-RNA complexes by rkirchdo » Fri, 2018-08-03 08:50 |
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1,295 |
by rmoretti Fri, 2018-08-24 11:28 |
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Docking protein complexes when constrained by oligomer symmetry by msk » Tue, 2014-06-03 11:09 |
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1,296 |
by msk Tue, 2014-06-03 11:09 |
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Fusing C-terminal or N-terminal segments onto proteins using Remodel by achambe » Mon, 2016-01-04 11:26 |
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1,296 |
by achambe Mon, 2016-01-04 11:26 |
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remodel: what are the exact meanings of notations for secondary structure? by lanselibai » Sat, 2015-01-17 04:53 |
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1,296 |
by lanselibai Sat, 2015-01-17 07:57 |
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Loop modeling with constraints by agctomer » Sat, 2021-03-20 03:53 |
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1,298 |
by agctomer Thu, 2021-04-08 07:37 |
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"core.kinematics.FoldTree" error upon running RAbD by Sunyp_IM » Fri, 2020-06-26 17:27 |
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1,305 |
by Sunyp_IM Fri, 2020-06-26 20:57 |
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RoseTTaFold by ozsolomon » Thu, 2021-10-07 05:27 |
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1,318 |
by ozsolomon Thu, 2021-10-07 14:25 |
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getting a3m files by alonwenger » Wed, 2021-12-15 02:38 |
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1,318 |
by alonwenger Sat, 2021-12-18 12:32 |
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BUG REPORT: Remodel Resfile ERROR: LEU was added more than once? by daniloboskovic » Wed, 2020-04-29 01:17 |
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1,318 |
by daniloboskovic Wed, 2020-04-29 05:51 |
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Error with Formatdb of legacy blast when running "install_dependencies.pl"? by Danielsebas » Mon, 2019-09-16 09:30 |
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1,322 |
by Danielsebas Tue, 2019-09-17 01:03 |
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Relax with multiple small molecules by jharamesh » Sun, 2019-05-26 19:34 |
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1,325 |
by rmoretti Mon, 2019-06-24 15:19 |
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Ligand Rotamer Control in Macther by Hirbond » Tue, 2022-10-25 13:01 |
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1,332 |
by Hirbond Wed, 2022-10-26 12:57 |
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Question on Designing with NCAAs by salvatta » Mon, 2018-09-10 10:09 |
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1,333 |
by rmoretti Thu, 2018-09-20 09:23 |
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Two questions on the RosettaScripts flexbb-interfacedesign.xml by johnnytam100 » Fri, 2019-03-15 04:54 |
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1,335 |
by rmoretti Fri, 2019-03-29 09:58 |
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Strong bias in sampling observed in RosettaDock by chenna » Thu, 2020-08-27 22:23 |
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1,337 |
by chenna Tue, 2021-10-12 20:51 |
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minimize_with_cst and convert_to_cst_file for ddG_monomer issues/confusion by Kharlamov1317a » Mon, 2020-09-21 08:46 |
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1,338 |
by Kharlamov1317a Wed, 2020-10-07 08:26 |
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Highly negative total score by Ruchi_P_Jain » Wed, 2019-04-24 19:55 |
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1,339 |
by nannemdp Thu, 2019-04-25 07:58 |
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Finding lowest energy structure among generated structures by Marius1987 » Sun, 2016-04-10 11:38 |
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1,341 |
by Marius1987 Sun, 2016-04-10 12:09 |
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How does the label in pdb files looks like when using ResiduePDBInfoHasLabel? by johnnytam100 » Fri, 2019-08-16 00:25 |
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1,342 |
by JackMaguire Fri, 2019-08-16 07:41 |
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Surface Docking Crash (continued) by dkozuch » Tue, 2017-09-12 06:18 |
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1,354 |
by rmoretti Tue, 2017-10-10 10:08 |
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VH-VL Orientation in antibody by sujigeorge1979 » Mon, 2019-06-17 01:23 |
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1,358 |
by jeliazkov Mon, 2019-06-17 06:03 |
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Rosetta Ligand Ensemble by malfonsoprieto » Wed, 2021-05-26 10:21 |
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1,362 |
by vizcarra Thu, 2021-08-26 10:16 |
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change number of output pose files written out (default=50) in ligand docking XML script by hdelrisco » Fri, 2019-10-18 13:50 |
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1,365 |
by hdelrisco Fri, 2019-10-18 17:16 |
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ligand docking with MPI by Ruska322 » Wed, 2019-09-04 03:47 |
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1,367 |
by Ruska322 Fri, 2019-09-06 07:13 |
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Thread target sequence by duz » Thu, 2021-04-01 10:09 |
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1,371 |
by duz Mon, 2021-05-03 07:50 |
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Loop modeling/closure for many structures by sn » Mon, 2017-03-06 11:25 |
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1,377 |
by rmoretti Mon, 2017-03-06 12:39 |
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Any progress on getting intermediate structures during a design? by broomsday » Mon, 2020-03-16 06:46 |
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1,379 |
by vmulligan Tue, 2020-03-17 11:35 |
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radius of gyration as constrain by dhirajks » Sat, 2018-05-05 23:00 |
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1,382 |
by smlewis Mon, 2018-05-07 11:42 |
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Fragment library (vall file) from Robetta? by alex » Sun, 2017-02-19 08:12 |
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1,383 |
by alex Sun, 2017-02-19 08:12 |
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RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist. by kamau » Fri, 2017-12-01 08:42 |
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1,384 |
by kamau Wed, 2017-12-13 14:31 |
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cm_scripts by sn » Wed, 2018-02-14 11:00 |
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1,390 |
by rmoretti Wed, 2018-02-21 15:21 |
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Repeatability of DDG calculation by jennifer » Wed, 2015-04-08 05:29 |
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1,393 |
by jennifer Wed, 2015-04-08 05:29 |
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OptimizeMembranePositionMover - This element is not expected by bjharris » Wed, 2020-07-01 23:21 |
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1,395 |
by bjharris Thu, 2020-07-02 11:09 |
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The usage of antibody_H3.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 22:50 |
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1,399 |
by Sunyp_IM Thu, 2020-06-04 08:20 |
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PEPSPEC by Neeraj » Wed, 2018-01-03 02:24 |
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1,400 |
by Andre Serobian Wed, 2020-07-08 04:44 |
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De novo water predictions using SPaDES by MNP1986 » Mon, 2019-03-25 07:53 |
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1,403 |
by matteoferla Tue, 2020-08-04 09:30 |
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AddHelixSequenceConstraints Mover by Negarsardar » Thu, 2019-05-30 03:17 |
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1,403 |
by vmulligan Thu, 2019-06-13 14:59 |
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ProteinInterfaceDesign algorithm questions by tsztain » Mon, 2019-02-18 14:10 |
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1,407 |
by rmoretti Sun, 2019-08-25 19:15 |
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Is native.pdb necess for fragment_picker？ by ylwang » Thu, 2020-03-12 00:57 |
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1,412 |
by ylwang Thu, 2020-03-12 20:42 |
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make_fragments.pl error by almeida85 » Mon, 2020-08-31 04:39 |
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1,421 |
by almeida85 Tue, 2020-09-01 01:29 |
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Problem passing a list of PDB files to minimize_with_cst by dolevrahat » Sun, 2018-11-18 16:13 |
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1,422 |
by rmoretti Wed, 2018-11-21 15:31 |
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Membrane Abinitio modeling by bharat_46010 » Mon, 2017-03-13 22:39 |
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1,427 |
by benhardy Wed, 2020-09-30 04:24 |
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ddg_monomer: if MPI executable is reproducible and efficient? by lanselibai » Sun, 2015-01-11 09:48 |
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1,428 |
by lanselibai Sun, 2015-01-11 10:50 |
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RosettaMatch by xingqing326 » Mon, 2019-07-22 13:14 |
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1,431 |
by rmoretti Mon, 2019-08-26 12:57 |
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Pepspec options by shaunmk » Mon, 2015-04-27 02:33 |
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1,432 |
by shaunmk Mon, 2015-04-27 02:33 |
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splitfile.py by saladi » Fri, 2018-03-30 10:31 |
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1,433 |
by rmoretti Tue, 2018-04-10 15:34 |
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Snugdock_error by luicui » Thu, 2017-02-09 21:06 |
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1,438 |
by smlewis Thu, 2017-02-09 21:50 |
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Relaxed proteins show higher clash score in molprobity results. by Wang Zhe » Fri, 2021-12-03 04:32 |
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1,439 |
by smlewis Wed, 2021-12-08 13:02 |
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sequence design to enhance Fc / Fc-g Receptor binding by jarod » Tue, 2017-05-23 09:00 |
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1,439 |
by jadolfbr Thu, 2017-06-01 10:00 |
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Rosetta antibody- modeling in the presense of an antigen by agctomer » Mon, 2021-02-01 03:19 |
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1,442 |
by nannemdp Wed, 2021-02-03 08:52 |
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missing atom number 5 atom name CB by ajaniharesh » Fri, 2019-04-26 12:08 |
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1,447 |
by rmoretti Fri, 2019-04-26 12:13 |
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Partial Active Site Design for a Novel Substrate by Derek » Wed, 2017-05-17 19:41 |
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1,450 |
by rmoretti Thu, 2017-05-18 13:51 |
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Imitating induced fit protocol in SymDock2 without any symmetry constraints by chenna » Fri, 2020-02-14 01:35 |
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1,451 |
by chenna Wed, 2020-03-04 03:24 |
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ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator> by DGR95 » Fri, 2021-04-16 19:26 |
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1,455 |
by DGR95 Wed, 2021-04-28 16:13 |
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Centroid mode minimization by Martin Floor » Tue, 2020-01-21 07:34 |
2 |
1,464 |
by Martin Floor Tue, 2020-01-21 11:15 |
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Question about fastsaxs and saxs_score by orionshih » Thu, 2019-06-13 02:30 |
2 |
1,469 |
by orionshih Wed, 2019-06-26 03:54 |
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dssp by MA » Thu, 2017-10-05 09:34 |
1 |
1,483 |
by rmoretti Tue, 2017-10-10 09:54 |
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Helical Symmetry Axis by Sandy » Tue, 2016-05-31 18:48 |
0 |
1,492 |
by Sandy Tue, 2016-05-31 18:48 |
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Domain insertion with Non-CAA by mwfranklin » Mon, 2017-01-16 12:30 |
0 |
1,494 |
by mwfranklin Mon, 2017-01-16 12:30 |
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blast database error by jessye » Sun, 2017-12-03 23:59 |
1 |
1,500 |
by smlewis Mon, 2017-12-04 12:18 |
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Using residue patches in AbinitioRelax by kent » Fri, 2018-11-02 11:19 |
1 |
1,501 |
by rmoretti Wed, 2018-11-21 15:40 |
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RosettaCM or FastRelax? by Tianyang89 » Wed, 2020-09-23 07:46 |
3 |
1,502 |
by danpf Thu, 2020-09-24 13:44 |
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antibody modeling error by mxp » Mon, 2019-09-16 18:29 |
2 |
1,508 |
by mxp Mon, 2019-09-23 01:40 |
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is it necessary to always run relax before any Rosetta by mainzer » Fri, 2019-04-12 01:35 |
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1,512 |
by rmoretti Wed, 2019-07-10 09:47 |
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antibody.linuxgccrelease- output models don't have the same sequence as the input fasta by agctomer » Thu, 2021-01-21 15:35 |
4 |
1,515 |
by agctomer Sun, 2021-01-31 01:06 |
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error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease by xinmiaohe » Thu, 2020-01-30 22:09 |
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1,522 |
by xinmiaohe Fri, 2020-01-31 08:23 |
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Comparative modeling of metalloproteins by ctqwong » Sun, 2020-07-12 13:51 |
3 |
1,530 |
by ctqwong Mon, 2020-07-27 01:48 |
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Error Interface analyser by jrcf » Thu, 2017-06-22 12:55 |
1 |
1,531 |
by smlewis Thu, 2017-06-22 13:31 |
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Rosetta fragment tools installation error by Danielsebas » Thu, 2019-08-29 02:17 |
2 |
1,533 |
by Danielsebas Sun, 2019-09-01 02:38 |
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ArchiveManager -- spinning down by Marius1987 » Fri, 2016-12-23 03:10 |
1 |
1,534 |
by smlewis Fri, 2016-12-23 07:04 |
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score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059' by sn » Fri, 2017-03-24 12:26 |
1 |
1,535 |
by rmoretti Fri, 2017-03-24 13:39 |
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How to run partial_thread in RosettaCM when residure are more than 9999? by lanselibai » Mon, 2020-05-11 22:43 |
2 |
1,543 |
by lanselibai Tue, 2020-05-12 20:25 |
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"make" error in "pdb2vall/structure_profile_scripts/DEPTH-CLONE-2.8.7" by Danielsebas » Mon, 2019-09-02 08:14 |
2 |
1,545 |
by Danielsebas Sun, 2019-09-08 02:08 |
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Calbur vs Energy Based Clustering by Swillard » Sun, 2018-07-01 13:24 |
1 |
1,545 |
by rmoretti Fri, 2018-08-03 08:26 |
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Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex by benhardy » Mon, 2020-06-15 09:33 |
3 |
1,549 |
by benhardy Fri, 2020-06-19 07:55 |
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Enzyme Design FlexBB Protocol Bug: DNA/RNA handling by kettner » Fri, 2019-06-14 14:16 |
1 |
1,551 |
by rmoretti Mon, 2019-06-24 13:46 |
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docking parse error by dave » Tue, 2018-12-04 08:41 |
1 |
1,551 |
by rmoretti Tue, 2018-12-04 08:55 |
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UnfoldedStateEnergyCalculator MPI Error by colin.walsh.brown » Mon, 2017-11-13 09:43 |
1 |
1,556 |
by smlewis Mon, 2017-11-13 10:43 |
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FloppyTail options error by DmitriiN » Fri, 2016-11-11 02:54 |
1 |
1,557 |
by smlewis Fri, 2016-11-11 08:33 |
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reporting bugs? (erraser in rosetta 3.10) by meyer » Fri, 2018-12-14 09:40 |
2 |
1,566 |
by everyday847 Fri, 2019-03-29 13:13 |
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MPdocking I_sc by jrcf » Mon, 2017-07-31 16:10 |
1 |
1,568 |
by rmoretti Thu, 2017-08-03 09:29 |
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Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2 by AJVincelli » Sat, 2018-07-14 13:14 |
1 |
1,572 |
by AJVincelli Sun, 2018-11-25 11:29 |
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