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Rosetta 3 - Applications

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Normal topic Relax with multiple small molecules
by jharamesh » Sun, 2019-05-26 19:34
1
1,094 by rmoretti
Mon, 2019-06-24 15:19
Normal topic ligand docking with MPI
by Ruska322 » Wed, 2019-09-04 03:47
2
1,096 by Ruska322
Fri, 2019-09-06 07:13
Normal topic The usage of antibody_H3.linuxgccrelease
by Sunyp_IM » Thu, 2020-05-28 22:50
2
1,098 by Sunyp_IM
Thu, 2020-06-04 08:20
Normal topic VH-VL Orientation in antibody
by sujigeorge1979 » Mon, 2019-06-17 01:23
1
1,101 by jeliazkov
Mon, 2019-06-17 06:03
Normal topic output file in ddg calcualtion
by malkeet.singh » Sun, 2017-12-03 07:59
1
1,102 by malkeet.singh
Wed, 2017-12-06 02:02
Normal topic How does the label in pdb files looks like when using ResiduePDBInfoHasLabel?
by johnnytam100 » Fri, 2019-08-16 00:25
1
1,103 by JackMaguire
Fri, 2019-08-16 07:41
Normal topic Highly negative total score
by Ruchi_P_Jain » Wed, 2019-04-24 19:55
1
1,104 by nannemdp
Thu, 2019-04-25 07:58
Normal topic Question on Designing with NCAAs
by salvatta » Mon, 2018-09-10 10:09
1
1,106 by rmoretti
Thu, 2018-09-20 09:23
Normal topic trRosetta protocol Segmentation Fault
by nc-ring » Wed, 2021-04-28 11:57
5
1,121 by nc-ring
Tue, 2021-05-04 12:26
Normal topic Two questions on the RosettaScripts flexbb-interfacedesign.xml
by johnnytam100 » Fri, 2019-03-15 04:54
1
1,127 by rmoretti
Fri, 2019-03-29 09:58
Normal topic AddHelixSequenceConstraints Mover
by Negarsardar » Thu, 2019-05-30 03:17
2
1,131 by vmulligan
Thu, 2019-06-13 14:59
Normal topic RosettaCM or FastRelax?
by Tianyang89 » Wed, 2020-09-23 07:46
3
1,134 by danpf
Thu, 2020-09-24 13:44
Normal topic Is native.pdb necess for fragment_picker?
by ylwang » Thu, 2020-03-12 00:57
2
1,135 by ylwang
Thu, 2020-03-12 20:42
Normal topic Score Functions for Ligand-protein Docking
by ziruiw » Sun, 2021-04-25 13:41
4
1,148 by ziruiw
Fri, 2021-04-30 12:01
Normal topic De novo water predictions using SPaDES
by MNP1986 » Mon, 2019-03-25 07:53
1
1,149 by matteoferla
Tue, 2020-08-04 09:30
Normal topic Imitating induced fit protocol in SymDock2 without any symmetry constraints
by chenna » Fri, 2020-02-14 01:35
2
1,150 by chenna
Wed, 2020-03-04 03:24
Normal topic Centroid mode minimization
by Martin Floor » Tue, 2020-01-21 07:34
2
1,154 by Martin Floor
Tue, 2020-01-21 11:15
Normal topic missing atom number 5 atom name CB
by ajaniharesh » Fri, 2019-04-26 12:08
1
1,155 by rmoretti
Fri, 2019-04-26 12:13
Normal topic Surface Docking Crash (continued)
by dkozuch » Tue, 2017-09-12 06:18
1
1,162 by rmoretti
Tue, 2017-10-10 10:08
Normal topic Problem passing a list of PDB files to minimize_with_cst
by dolevrahat » Sun, 2018-11-18 16:13
1
1,168 by rmoretti
Wed, 2018-11-21 15:31
Normal topic ProteinInterfaceDesign algorithm questions
by tsztain » Mon, 2019-02-18 14:10
1
1,168 by rmoretti
Sun, 2019-08-25 19:15
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Mon, 2016-01-04 11:26
0
1,172 by achambe
Mon, 2016-01-04 11:26
Normal topic Docking protein complexes when constrained by oligomer symmetry
by msk » Tue, 2014-06-03 11:09
0
1,173 by msk
Tue, 2014-06-03 11:09
Normal topic remodel: what are the exact meanings of notations for secondary structure?
by lanselibai » Sat, 2015-01-17 04:53
0
1,179 by lanselibai
Sat, 2015-01-17 07:57
Normal topic RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist.
by kamau » Fri, 2017-12-01 08:42
1
1,186 by kamau
Wed, 2017-12-13 14:31
Normal topic RosettaMatch
by xingqing326 » Mon, 2019-07-22 13:14
1
1,187 by rmoretti
Mon, 2019-08-26 12:57
Normal topic Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex
by benhardy » Mon, 2020-06-15 09:33
3
1,187 by benhardy
Fri, 2020-06-19 07:55
Normal topic Question about fastsaxs and saxs_score
by orionshih » Thu, 2019-06-13 02:30
2
1,189 by orionshih
Wed, 2019-06-26 03:54
Normal topic Loop modeling/closure for many structures
by sn » Mon, 2017-03-06 11:25
1
1,194 by rmoretti
Mon, 2017-03-06 12:39
Normal topic radius of gyration as constrain
by dhirajks » Sat, 2018-05-05 23:00
1
1,194 by smlewis
Mon, 2018-05-07 11:42
Normal topic PEPSPEC
by Neeraj » Wed, 2018-01-03 02:24
1
1,195 by Andre Serobian
Wed, 2020-07-08 04:44
Normal topic cm_scripts
by sn » Wed, 2018-02-14 11:00
1
1,200 by rmoretti
Wed, 2018-02-21 15:21
Normal topic Finding lowest energy structure among generated structures
by Marius1987 » Sun, 2016-04-10 11:38
0
1,204 by Marius1987
Sun, 2016-04-10 12:09
Normal topic Comparative modeling of metalloproteins
by ctqwong » Sun, 2020-07-12 13:51
3
1,208 by ctqwong
Mon, 2020-07-27 01:48
Normal topic antibody modeling error
by mxp » Mon, 2019-09-16 18:29
2
1,210 by mxp
Mon, 2019-09-23 01:40
Normal topic Rosetta fragment tools installation error
by Danielsebas » Thu, 2019-08-29 02:17
2
1,216 by Danielsebas
Sun, 2019-09-01 02:38
Normal topic Remodel: the pose does not have residue with chain=H, PDBnum=114
by lanselibai » Wed, 2019-12-25 13:35
1
1,216 by lanselibai
Fri, 2019-12-27 09:38
Normal topic splitfile.py
by saladi » Fri, 2018-03-30 10:31
1
1,226 by rmoretti
Tue, 2018-04-10 15:34
Normal topic "make" error in "pdb2vall/structure_profile_scripts/DEPTH-CLONE-2.8.7"
by Danielsebas » Mon, 2019-09-02 08:14
2
1,237 by Danielsebas
Sun, 2019-09-08 02:08
Normal topic How to run partial_thread in RosettaCM when residure are more than 9999?
by lanselibai » Mon, 2020-05-11 22:43
2
1,238 by lanselibai
Tue, 2020-05-12 20:25
Normal topic error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease
by xinmiaohe » Thu, 2020-01-30 22:09
1
1,240 by xinmiaohe
Fri, 2020-01-31 08:23
Normal topic Prevention of the negatively charged Nitrogen protonation by coupled_moves
by Corvin » Wed, 2020-11-18 02:56
4
1,244 by Corvin
Wed, 2020-11-25 02:58
Normal topic issues about cstfile in RosettaMatch
by Nicole Deng » Fri, 2020-12-18 05:44
3
1,244 by He Xiao
Sun, 2021-04-11 19:29
Normal topic Fragment library (vall file) from Robetta?
by alex » Sun, 2017-02-19 08:12
0
1,246 by alex
Sun, 2017-02-19 08:12
Normal topic sequence design to enhance Fc / Fc-g Receptor binding
by jarod » Tue, 2017-05-23 09:00
1
1,248 by jadolfbr
Thu, 2017-06-01 10:00
Normal topic is it necessary to always run relax before any Rosetta
by mainzer » Fri, 2019-04-12 01:35
1
1,249 by rmoretti
Wed, 2019-07-10 09:47
Normal topic Partial Active Site Design for a Novel Substrate
by Derek » Wed, 2017-05-17 19:41
1
1,249 by rmoretti
Thu, 2017-05-18 13:51
Normal topic Membrane Abinitio modeling
by bharat_46010 » Mon, 2017-03-13 22:39
1
1,250 by benhardy
Wed, 2020-09-30 04:24
Normal topic Snugdock_error
by luicui » Thu, 2017-02-09 21:06
1
1,256 by smlewis
Thu, 2017-02-09 21:50
Normal topic What is a rational minimal value for the "-nstruct" option
by Sunyp_IM » Fri, 2020-05-22 01:28
3
1,260 by nannemdp
Sun, 2020-05-24 14:46
Normal topic Building loop extensions in a membrane protein with Remodel
by benhardy » Tue, 2020-06-02 08:21
2
1,263 by benhardy
Sun, 2020-09-20 11:15
Normal topic blast database error
by jessye » Sun, 2017-12-03 23:59
1
1,263 by smlewis
Mon, 2017-12-04 12:18
Normal topic relax.linuxgccrelease in multiple processors
by jpfuenzalidawx » Thu, 2021-01-14 14:07
5
1,270 by jadolfbr
Fri, 2021-01-15 08:06
Normal topic dssp
by MA » Thu, 2017-10-05 09:34
1
1,275 by rmoretti
Tue, 2017-10-10 09:54
Normal topic Using residue patches in AbinitioRelax
by kent » Fri, 2018-11-02 11:19
1
1,279 by rmoretti
Wed, 2018-11-21 15:40
Normal topic Repeatability of DDG calculation
by jennifer » Wed, 2015-04-08 05:29
0
1,280 by jennifer
Wed, 2015-04-08 05:29
Normal topic ddg_monomer: if MPI executable is reproducible and efficient?
by lanselibai » Sun, 2015-01-11 09:48
0
1,280 by lanselibai
Sun, 2015-01-11 10:50
Normal topic De novo structure building with medium resolution map
by BuddySphinx » Tue, 2019-07-02 09:07
2
1,285 by BuddySphinx
Tue, 2019-07-02 12:03
Normal topic reporting bugs? (erraser in rosetta 3.10)
by meyer » Fri, 2018-12-14 09:40
2
1,286 by everyday847
Fri, 2019-03-29 13:13
Normal topic RosettaScript Segmentation Fault (crash log attached)
by chrisHKL » Thu, 2020-03-05 07:21
2
1,292 by chrisHKL
Thu, 2020-03-05 09:11
Normal topic relax and movemap
by Alison_Yajie » Wed, 2020-05-20 21:27
3
1,293 by smlewis
Thu, 2020-05-21 21:05
Normal topic Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2
by AJVincelli » Sat, 2018-07-14 13:14
1
1,300 by AJVincelli
Sun, 2018-11-25 11:29
Normal topic RosettaCM: An internal error has occurred when "Running the Hybridize mover"
by haom » Mon, 2020-06-15 05:56
4
1,301 by haom
Tue, 2020-06-16 05:55
Normal topic Pepspec options
by shaunmk » Mon, 2015-04-27 02:33
0
1,312 by shaunmk
Mon, 2015-04-27 02:33
Normal topic "Install_dependencies.pl" gives "Aborted" when downloading "nr" database?
by Danielsebas » Sat, 2019-09-14 08:53
3
1,316 by danpf
Mon, 2019-09-16 09:51
Normal topic docking parse error
by dave » Tue, 2018-12-04 08:41
1
1,317 by rmoretti
Tue, 2018-12-04 08:55
Normal topic GrowLigand
by allan.ferrari » Sat, 2019-10-19 05:32
2
1,330 by allan.ferrari
Tue, 2019-11-05 16:52
Normal topic Error Interface analyser
by jrcf » Thu, 2017-06-22 12:55
1
1,330 by smlewis
Thu, 2017-06-22 13:31
Normal topic clean_pdb not working
by Andre Serobian » Thu, 2020-07-23 04:48
3
1,334 by rmoretti
Tue, 2020-07-28 08:24
Normal topic Enzyme Design FlexBB Protocol Bug: DNA/RNA handling
by kettner » Fri, 2019-06-14 14:16
1
1,336 by rmoretti
Mon, 2019-06-24 13:46
Normal topic score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059'
by sn » Fri, 2017-03-24 12:26
1
1,337 by rmoretti
Fri, 2017-03-24 13:39
Normal topic ArchiveManager -- spinning down
by Marius1987 » Fri, 2016-12-23 03:10
1
1,339 by smlewis
Fri, 2016-12-23 07:04
Normal topic MPdocking I_sc
by jrcf » Mon, 2017-07-31 16:10
1
1,341 by rmoretti
Thu, 2017-08-03 09:29
Normal topic Helical Symmetry Axis
by Sandy » Tue, 2016-05-31 18:48
0
1,344 by Sandy
Tue, 2016-05-31 18:48
Normal topic UnfoldedStateEnergyCalculator MPI Error
by colin.walsh.brown » Mon, 2017-11-13 09:43
1
1,345 by smlewis
Mon, 2017-11-13 10:43
Normal topic Calbur vs Energy Based Clustering
by Swillard » Sun, 2018-07-01 13:24
1
1,352 by rmoretti
Fri, 2018-08-03 08:26
Normal topic Domain insertion with Non-CAA
by mwfranklin » Mon, 2017-01-16 12:30
0
1,355 by mwfranklin
Mon, 2017-01-16 12:30
Normal topic Rosetta failed in making score.fsc
by josdee » Sun, 2017-02-05 21:58
1
1,358 by smlewis
Mon, 2017-02-06 06:57
Normal topic Trouble running MPI docking protocol, please help!
by Rob_Barringer » Tue, 2020-08-18 06:40
2
1,360 by Rob_Barringer
Fri, 2020-09-25 05:45
Normal topic protein interface design
by Negarsardar » Tue, 2019-05-28 07:04
2
1,361 by Negarsardar
Thu, 2019-05-30 23:46
Normal topic Transmembrane helix fold-and-dock?
by sarah_b » Tue, 2020-05-12 02:09
3
1,361 by jkleman
Tue, 2020-05-19 15:02
Normal topic Model monomer to fit cryo density map of a filament
by BuddySphinx » Wed, 2018-12-12 18:58
2
1,365 by BuddySphinx
Sun, 2018-12-30 16:49
Normal topic FloppyTail options error
by DmitriiN » Fri, 2016-11-11 02:54
1
1,366 by smlewis
Fri, 2016-11-11 08:33
Normal topic Can't generate a cst file to use with ddg_monomer application
by ctqwong » Sat, 2021-03-13 03:53
6
1,369 by ctqwong
Thu, 2021-03-18 02:04
Normal topic ligand_docking_error
by Alison_Yajie » Mon, 2020-04-20 12:27
3
1,370 by YuFei
Sat, 2020-05-30 00:12
Normal topic Using different number of 9-mers (UPDATED)
by JadAbbass » Mon, 2017-08-28 07:20
1
1,378 by rmoretti
Mon, 2017-09-04 10:33
Normal topic Choosing weight file for interface design?
by johnnytam100 » Tue, 2019-05-07 00:47
2
1,383 by johnnytam100
Tue, 2019-05-21 22:33
Normal topic ddG calculations to study point mutations
by N.Chopra » Fri, 2018-12-07 12:36
1
1,383 by jeliazkov
Fri, 2018-12-07 12:51
Normal topic Place ligand in a pocket
by sn » Fri, 2017-09-15 12:53
1
1,383 by rmoretti
Fri, 2017-09-15 13:11
Normal topic Can rosetta generate a centroid model based on the rna sequence?
by yels » Fri, 2021-03-26 04:06
7
1,388 by yels
Wed, 2021-03-31 18:31
Normal topic Model two domain protein
by sn » Sat, 2017-05-06 13:21
1
1,404 by rmoretti
Mon, 2017-05-15 08:54
Normal topic When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error
by Martin Floor » Thu, 2020-09-17 06:01
4
1,412 by Martin Floor
Tue, 2020-09-22 00:48
Normal topic Generating non-redundat dataset for loop models
by dario.corrada » Wed, 2016-03-09 03:00
1
1,417 by smlewis
Wed, 2016-03-09 04:11
Normal topic "Make_fragments.pl" can't connect to dependencies links
by Corvin » Wed, 2019-09-04 23:54
2
1,417 by Corvin
Thu, 2019-10-10 01:12
Normal topic Design with limited number of aminoacids at given position
by sdh_h » Sun, 2016-12-04 03:44
1
1,419 by smlewis
Thu, 2016-12-08 15:50
Normal topic Fast relax not working
by eyong123 » Fri, 2017-04-21 06:06
1
1,427 by rmoretti
Fri, 2017-04-21 07:41
Normal topic Filter for fixed-bb design using RosettaScript?
by chrisHKL » Fri, 2020-02-28 19:47
4
1,433 by vmulligan
Mon, 2020-03-02 13:40
Normal topic Docking prepack vs. relax
by David Weis » Tue, 2017-02-21 05:37
1
1,437 by smlewis
Tue, 2017-02-21 07:58
Normal topic Mutating phosphorylated residues to "canonical" residues and vice versa
by ValentinaSora » Mon, 2019-05-20 05:58
1
1,438 by rmoretti
Wed, 2019-07-10 09:22
Normal topic Speed problem when running RosettaLigand ligand docking
by Nicole Deng » Tue, 2019-10-08 04:29
2
1,439 by Nicole Deng
Tue, 2020-11-03 19:07
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