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Rosetta 3 - Applications

Topic / Topic starter Replies Viewssort ascending Last post
Normal topic Problem with symmetric docking
by saxen » Fri, 2011-04-29 15:15
3
3,128 by smlewis
Mon, 2014-04-21 06:47
Normal topic xyzVector error in Enzyme design
by ajmbarbosa » Tue, 2016-01-05 09:46
3
3,125 by rmoretti
Fri, 2016-06-17 10:36
Normal topic Per residue scoring
by chelsell » Mon, 2015-08-17 14:43
3
3,125 by rmoretti
Wed, 2015-09-02 12:33
Normal topic Generate fragment file on my computer
by jrcf » Mon, 2015-09-21 15:41
2
3,124 by jrcf
Mon, 2015-10-05 21:32
Normal topic Problem with SymmDock in helical symmetry
by mumdonar » Wed, 2013-09-18 03:59
2
3,120 by mumdonar
Mon, 2014-04-21 06:48
Normal topic ddg_monomer.mpi
by gw » Thu, 2011-10-27 16:45
3
3,112 by smlewis
Mon, 2014-04-21 06:47
Normal topic clustering in RosettaRemodel
by cheyuk » Wed, 2014-04-23 03:09
3
3,102 by rmoretti
Mon, 2014-05-12 08:45
Normal topic ddG filter gives deltaG calculation number?
by jarod » Tue, 2013-05-28 23:43
2
3,100 by jarod
Mon, 2014-04-21 06:47
Normal topic auto_setup_metals flag with loop modeling application fails
by beowulfey » Wed, 2015-06-10 07:44
3
3,099 by beowulfey
Tue, 2015-06-23 16:10
Normal topic Modeling of side-chains onto membrane ab initio cluster?
by akfried » Thu, 2011-06-23 04:03
3
3,093 by nkemjika
Mon, 2014-04-21 06:47
Normal topic revert_design_to_native app comparison to FavorNativeResidue mover
by nwhoppe » Wed, 2016-06-29 14:35
3
3,086 by rmoretti
Tue, 2016-07-12 09:30
Normal topic null mutation with ddg_monomer
by fred » Fri, 2012-05-11 07:16
4
3,079 by fred
Mon, 2014-04-21 06:47
Normal topic Multiple Chain Comparative Modeling - End result is not even close to template structure
by eskici » Wed, 2012-08-29 08:09
2
3,067 by eskici
Mon, 2014-04-21 06:47
Normal topic Error when running Remodel with EnzDes constraint file to extend c-terminal
by Jeffrey_Chen » Thu, 2017-01-19 06:20
4
3,054 by dfcoelho
Tue, 2017-10-17 11:52
Normal topic printing our per-residue energies including H-bonding energies
by vijayan » Tue, 2013-07-02 08:51
2
3,047 by rmoretti
Mon, 2014-04-21 06:48
Normal topic FlexPepDock for protein containing multiple chains
by Dimitrov » Mon, 2012-10-08 08:31
3
3,047 by smlewis
Mon, 2014-04-21 06:47
Normal topic Can only relax one structure at a time
by lah435 » Wed, 2012-12-12 01:55
3
3,044 by smlewis
Mon, 2014-04-21 06:47
Normal topic Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking)
by snorp » Mon, 2014-04-14 13:01
2
3,039 by jadolfbr
Mon, 2014-05-12 10:41
Normal topic ddG Monomer Low Res Protocol Convergence
by harshkhare » Thu, 2012-03-01 00:45
2
3,032 by harshkhare
Mon, 2014-04-21 06:47
Normal topic Ligand dock analysis
by sacch » Tue, 2012-05-22 01:20
3
3,008 by glemmon
Mon, 2014-04-21 06:47
Normal topic pdb2vall
by JadAbbass » Mon, 2013-07-08 12:11
3
3,003 by rmoretti
Mon, 2014-04-21 06:48
Normal topic proline patching problem
by xun » Tue, 2012-01-03 11:15
3
2,999 by xun
Mon, 2014-04-21 06:47
Normal topic High energies after loopmodel run
by michki » Thu, 2014-05-08 05:14
3
2,997 by rmoretti
Mon, 2014-05-12 15:16
Normal topic Structure determination combining X-ray diffraction data and NMR chemical shift
by MajorID » Mon, 2011-10-17 19:55
2
2,992 by rmoretti
Mon, 2014-04-21 06:47
Normal topic strange effect in: SymDock.linuxgccrelease
by ast » Tue, 2013-06-11 11:05
3
2,967 by ast
Mon, 2014-04-21 06:48
Normal topic Executing the clean_pdb.py script
by Rkfoury » Fri, 2015-02-20 10:16
1
2,966 by lanselibai
Tue, 2015-02-24 02:36
Normal topic CSrosetta run problem
by erin_cutts » Fri, 2013-06-28 09:52
2
2,959 by erin_cutts
Mon, 2014-04-21 06:48
Normal topic Add missing residues in loop modeling
by exchhattu » Thu, 2013-06-20 17:38
1
2,953 by smlewis
Mon, 2014-04-21 06:48
Normal topic what does initialize_rigid_body_dofs do?
by attesor » Mon, 2015-10-26 05:12
3
2,946 by rmoretti
Tue, 2015-11-10 11:35
Normal topic molfile to params polymer python errors
by tsztain » Sun, 2018-12-02 15:38
5
2,943 by tsztain
Tue, 2018-12-11 13:41
Normal topic Missing CS-HM-Rosetta Binary files
by Marius1987 » Wed, 2016-02-10 05:52
3
2,934 by Marius1987
Mon, 2016-03-14 04:34
Normal topic Fastrelax problem
by Pernille » Fri, 2014-06-20 00:16
2
2,933 by Pernille
Thu, 2014-07-03 07:21
Normal topic Floppytail modelling
by felipet » Fri, 2011-06-24 09:23
2
2,926 by felipet
Mon, 2014-04-21 06:47
Normal topic conway2016 correction on beta-nov15?
by attesor » Wed, 2017-03-15 05:26
5
2,922 by attesor
Thu, 2017-03-16 01:21
Normal topic Compiling Rosetta 3.3 on Linux Mint
by proteinproteindock » Thu, 2011-09-01 16:05
2
2,919 by proteinproteindock
Mon, 2014-04-21 06:47
Normal topic Not found some Flags
by jrcf » Sat, 2015-09-19 12:08
2
2,916 by jrcf
Mon, 2015-09-21 11:10
Normal topic Adding bridged water interaction in constraint file
by purvi24 » Thu, 2019-02-28 07:01
8
2,916 by purvi24
Mon, 2019-03-11 06:43
Normal topic folding ectodomain in membrane ab initio
by freedman » Mon, 2015-05-25 21:09
3
2,916 by rmoretti
Fri, 2015-06-19 13:53
Normal topic Loop modeling - the appropriate way to model a peptide insertion?
by xding » Thu, 2018-08-02 15:30
6
2,915 by smlewis
Wed, 2018-08-08 15:48
Normal topic Snugdock_input
by luicui » Wed, 2017-01-18 16:48
5
2,908 by smlewis
Fri, 2017-01-20 08:14
Normal topic Alanine Scanning
by gjbartlett » Mon, 2013-08-05 07:02
1
2,906 by rmoretti
Mon, 2014-04-21 06:48
Normal topic relax constraints not minimized
by m_grisewood » Fri, 2012-08-10 08:31
2
2,902 by m_grisewood
Mon, 2014-04-21 06:47
Normal topic Rosetta Holes
by zsun12 » Wed, 2015-09-30 11:40
1
2,895 by rmoretti
Mon, 2015-10-12 15:20
Normal topic Can't append or prepend with pepspec
by danzinho » Tue, 2015-03-31 01:19
3
2,890 by dswhit
Tue, 2015-04-21 10:14
Normal topic Lammps or RosettaSurface
by StevPChem » Fri, 2016-06-10 10:13
3
2,884 by Anpu
Tue, 2018-09-25 18:53
Normal topic Docking seems to not parse the -nstruct flag
by rosend » Tue, 2015-11-17 12:01
2
2,884 by rosend
Tue, 2015-11-17 12:12
Normal topic RMSD calculation
by hamedkhakzad » Tue, 2016-09-13 04:56
2
2,884 by rmoretti
Wed, 2016-09-14 02:05
Normal topic Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved]
by loreseeker » Wed, 2011-09-14 08:13
2
2,872 by loreseeker
Mon, 2014-04-21 06:47
Normal topic Ab-initio modeling on part of the protein
by xiayanlawrence » Thu, 2013-12-19 07:45
1
2,839 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Loop design with length variation
by jarod » Thu, 2016-06-16 19:54
3
2,839 by rmoretti
Tue, 2016-07-12 09:41
Normal topic example scripts for comparative modeling
by fglaser » Sun, 2011-02-27 21:50
2
2,830 by maxebert
Mon, 2014-04-21 06:47
Normal topic modeling missing linker in a protein
by Isaure de Beauchene » Fri, 2012-05-11 10:13
1
2,826 by smlewis
Mon, 2014-04-21 06:47
Normal topic rotamer library in coupled_moves
by mtyras » Fri, 2015-05-29 07:46
2
2,818 by mtyras
Mon, 2015-06-08 03:18
Normal topic ddg_monomer: what is the theoretical solution condition for the scoring?
by lanselibai » Sat, 2016-04-30 03:26
3
2,810 by smlewis
Mon, 2016-05-02 08:20
Normal topic Enzdes constraint file not defined correctly
by eyong123 » Fri, 2015-03-27 07:16
3
2,807 by rmoretti
Thu, 2015-04-16 10:38
Normal topic Error encountered during Rosetta loop modeling
by max » Tue, 2014-11-25 02:17
3
2,799 by max
Thu, 2014-11-27 02:56
Normal topic Different scoring applications (score vs score_aln vs score_jd2, etc.)?
by cossio » Fri, 2014-12-26 07:19
2
2,788 by cossio
Tue, 2015-01-20 06:40
Normal topic Generate fragment locally
by deltag » Wed, 2012-02-01 06:26
2
2,784 by deltag
Mon, 2014-04-21 06:47
Normal topic Rosetta RNA denovo huge memory usage (probable memory leak)
by cdegut » Mon, 2017-10-30 16:41
5
2,777 by cdegut
Fri, 2017-11-03 05:50
Normal topic MaxSub and MaxSub2.0
by JadAbbass » Tue, 2013-10-15 13:36
2
2,771 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file?
by lanselibai » Sun, 2014-11-16 10:26
3
2,764 by G Mustafa
Thu, 2018-10-18 05:31
Normal topic minimize_with_cst problems (ddg_monomer)
by alexn » Tue, 2011-09-20 13:46
2
2,747 by alexn
Mon, 2014-04-21 06:47
Normal topic Score - Strange message
by Ashafix » Wed, 2013-11-20 15:23
2
2,745 by Ashafix
Mon, 2014-04-21 06:48
Normal topic terminal amino acids of gap has incomplete valency
by malkeet.singh » Wed, 2017-11-29 05:20
6
2,743 by rmoretti
Fri, 2017-12-01 12:05
Normal topic cyclization_type flag in simple_cycpep_predict
by Florent Langenfeld » Thu, 2018-01-04 09:22
5
2,743 by Florent Langenfeld
Tue, 2018-03-27 11:44
Normal topic Residue_energy_breakdown utility
by cn » Sat, 2012-03-17 06:11
3
2,740 by cn
Mon, 2014-04-21 06:47
Normal topic Trouble enforcing a disulfide in loop building
by chelsell » Sun, 2015-05-10 16:31
2
2,736 by chelsell
Wed, 2015-05-27 14:36
Normal topic running in MPI mode and multiple scores per output PDB file?
by dantimatter » Wed, 2019-10-30 09:42
7
2,736 by dantimatter
Wed, 2019-11-06 09:51
Normal topic Running RosettaHoles2
by weehee » Wed, 2013-02-13 09:35
3
2,730 by weehee
Mon, 2014-04-21 06:47
Normal topic How to minimize the decoys obtained from backrub?
by Vedasheersh » Wed, 2017-06-14 10:26
5
2,730 by SenyorDrew
Fri, 2017-06-30 09:47
Normal topic flexpep docking, select the decoy to do the further docking, questions
by michael_luntan » Fri, 2011-04-22 04:43
2
2,729 by michael_luntan
Mon, 2014-04-21 06:47
Normal topic RosettaRemodel
by gw » Wed, 2011-09-14 13:24
2
2,728 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to sort a Silent File based on RMSD
by JadAbbass » Sun, 2013-08-04 14:40
2
2,724 by lanselibai
Mon, 2014-10-06 15:30
Normal topic How to run simulations with non-canonical amino acids?
by Denise » Thu, 2017-06-08 07:50
4
2,724 by Denise
Thu, 2017-06-15 04:26
Normal topic problem with fixed_membrane option of membrane abinitio
by yescalona » Thu, 2013-01-17 15:42
3
2,713 by smlewis
Mon, 2014-04-21 06:47
Normal topic score and relax
by Prasanth Kumar » Thu, 2013-05-02 05:09
1
2,707 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease?
by lanselibai » Thu, 2015-01-08 03:23
3
2,687 by lanselibai
Tue, 2015-01-13 14:25
Normal topic std::bad_alloc error after changing .xml script?
by chrisHKL » Wed, 2020-03-04 11:44
10
2,670 by jadolfbr
Thu, 2020-03-05 07:02
Normal topic DDG monomer and backrub motions
by yperez » Thu, 2012-06-21 08:10
2
2,665 by yperez
Mon, 2014-04-21 06:47
Normal topic error with fragment_picker.linuxgccrelease
by jiongzhang » Tue, 2012-04-17 09:07
3
2,664 by smlewis
Mon, 2014-04-21 06:47
Normal topic How do I explicitly add residues for design in the interface optimization script?
by ahonegger » Mon, 2014-05-12 07:40
2
2,659 by ahonegger
Mon, 2014-05-12 09:08
Normal topic rosetta app
by MA » Wed, 2017-07-05 06:52
5
2,659 by smlewis
Tue, 2017-07-11 07:53
Normal topic Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB"
by brspurri » Fri, 2017-03-24 10:52
3
2,649 by brspurri
Fri, 2017-03-24 11:35
Normal topic ambiguous constraints
by shrutikhare » Mon, 2014-05-12 04:42
1
2,648 by rmoretti
Mon, 2014-05-12 08:25
Normal topic Use "loopmodel.linuxgccrelease" CCD to build missing residue positions
by lanselibai » Sun, 2014-10-12 09:00
2
2,638 by lanselibai
Mon, 2014-10-13 10:10
Normal topic Fragment files for membrane_abinitio application
by sumukh21 » Tue, 2011-02-15 17:23
2
2,637 by sumukh21
Mon, 2014-04-21 06:47
Normal topic Abinito for Multimers
by Prasanth Kumar » Wed, 2014-01-22 17:45
2
2,624 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic placing a constraint during structure prediction
by cbala » Thu, 2011-04-07 08:54
1
2,621 by ic3reyes
Mon, 2014-04-21 06:47
Normal topic Symmetric docking with multiple chains as asymmetric unit
by sarah29 » Tue, 2013-11-05 20:24
1
2,613 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Local docking: "manually place the two proteins facing each other" ?
by mdeklotz » Fri, 2018-07-20 10:24
5
2,610 by dfcoelho
Tue, 2018-10-16 09:05
Normal topic scoring input pdbs as the same as docking score
by hamedkhakzad » Fri, 2016-07-01 07:15
3
2,603 by rmoretti
Tue, 2016-07-12 09:05
Normal topic how to do alanine scanning
by xinmiaohe » Mon, 2019-08-26 17:40
5
2,597 by xinmiaohe
Fri, 2019-10-04 08:54
Normal topic Total score problems with high-res ddg_monomer
by jklesmith » Tue, 2015-03-10 15:54
2
2,596 by jennifer
Fri, 2015-03-27 05:56
Normal topic Fnat and Irms are nan in score.sc from docking_protocol?
by cossio » Sun, 2015-09-13 07:34
2
2,594 by rmoretti
Thu, 2015-09-17 12:47
Normal topic do mpi apps share memory?
by fred » Thu, 2014-01-23 11:49
2
2,587 by fred
Mon, 2014-04-21 06:48
Normal topic Docking Prepack protocol working or not ?
by MJG » Mon, 2017-04-03 08:02
4
2,586 by MJG
Tue, 2017-04-04 23:59
Normal topic kinematic loop modeling multiple input: possible?
by a_s_a » Thu, 2011-05-12 09:33
2
2,582 by a_s_a
Mon, 2014-04-21 06:47
Normal topic  The error of InterfaceAnalyzer
by asbelx » Thu, 2017-12-21 19:04
3
2,578 by smlewis
Sat, 2017-12-23 15:56
Normal topic select_best_unique_ligand_poses output
by ast » Thu, 2013-07-11 02:33
2
2,573 by ast
Mon, 2014-04-21 06:48
Normal topic high-res docking
by tfliu » Mon, 2013-07-15 02:49
2
2,565 by tfliu
Mon, 2014-04-21 06:48
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