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Rosetta 3 - Applications
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protein-protein docking with flexible backbone by tim » Fri, 2013-12-20 05:52 |
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4,411 |
by rmoretti Mon, 2014-04-21 06:48 |
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xyzVector error in Enzyme design by ajmbarbosa » Tue, 2016-01-05 09:46 |
3 |
4,386 |
by rmoretti Fri, 2016-06-17 10:36 |
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Rosetta RNA denovo huge memory usage (probable memory leak) by cdegut » Mon, 2017-10-30 16:41 |
5 |
4,373 |
by cdegut Fri, 2017-11-03 05:50 |
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comparative modelling and broker by felipet » Tue, 2013-02-05 08:33 |
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4,371 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop prediction by yzhou » Thu, 2013-07-18 14:24 |
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4,369 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Some wrong with the flag "-l" for score_jd2.linuxgccrelease by lanselibai » Mon, 2014-09-29 02:29 |
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4,354 |
by lanselibai Tue, 2014-09-30 02:28 |
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How to minimize the decoys obtained from backrub? by Vedasheersh » Wed, 2017-06-14 10:26 |
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4,331 |
by SenyorDrew Fri, 2017-06-30 09:47 |
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auto_setup_metals flag with loop modeling application fails by beowulfey » Wed, 2015-06-10 07:44 |
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4,317 |
by beowulfey Tue, 2015-06-23 16:10 |
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membrane ab initio modeling application with constraints by ytao » Thu, 2012-11-08 11:56 |
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4,293 |
by ytao Mon, 2014-04-21 06:47 |
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HBNet and RosettaScripts by protos_heis » Tue, 2014-08-05 06:05 |
3 |
4,291 |
by protos_heis Tue, 2014-08-05 12:47 |
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Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB by rlwoltz » Thu, 2019-01-24 19:43 |
3 |
4,282 |
by bjharris Sun, 2020-08-23 14:03 |
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Changing scoring function for fixbb protocol by mdyini » Sat, 2012-07-07 18:43 |
4 |
4,281 |
by mdyini Mon, 2014-04-21 06:47 |
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rosetta3.4 fragment file problem by David Hoover » Wed, 2012-05-16 14:42 |
4 |
4,275 |
by dgront Mon, 2014-04-21 06:47 |
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loopmodel thinks there are no residues in the pose by lah435 » Wed, 2013-03-27 02:46 |
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4,264 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to choose designed antibody by Sunyp_IM » Wed, 2020-06-24 10:06 |
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4,261 |
by chandana Tue, 2022-08-09 20:27 |
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ddg_monomer.mpi by gw » Thu, 2011-10-27 16:45 |
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4,257 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaScripts LinkResidues by Yero » Fri, 2019-05-17 05:26 |
5 |
4,256 |
by Yero Thu, 2019-07-18 01:39 |
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partial ab initio modeling by fred » Wed, 2011-08-17 14:14 |
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4,249 |
by smlewis Mon, 2014-04-21 06:47 |
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Per residue scoring by chelsell » Mon, 2015-08-17 14:43 |
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4,248 |
by rmoretti Wed, 2015-09-02 12:33 |
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null mutation with ddg_monomer by fred » Fri, 2012-05-11 07:16 |
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4,244 |
by fred Mon, 2014-04-21 06:47 |
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Constraints in RosettaCM by kbuhr » Fri, 2015-07-31 06:55 |
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4,242 |
by kbuhr Mon, 2016-03-28 01:08 |
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revert_design_to_native app comparison to FavorNativeResidue mover by nwhoppe » Wed, 2016-06-29 14:35 |
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4,238 |
by rmoretti Tue, 2016-07-12 09:30 |
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RMSD calculation by hamedkhakzad » Tue, 2016-09-13 04:56 |
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4,231 |
by rmoretti Wed, 2016-09-14 02:05 |
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Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains by ahonegger » Tue, 2012-04-24 01:34 |
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4,225 |
by ahonegger Mon, 2014-04-21 06:47 |
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Unsatisfied interface H-bond in Ligand docking by Prasanth Kumar » Thu, 2013-07-18 12:04 |
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4,216 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking by Corvin » Wed, 2019-06-19 08:40 |
5 |
4,207 |
by rmoretti Tue, 2019-07-09 10:13 |
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"sparks failed" error when running "make_fragments.pl"? by Danielsebas » Tue, 2019-09-03 03:43 |
6 |
4,199 |
by Jacob_Verburgt Tue, 2020-03-10 14:39 |
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How to run simulations with non-canonical amino acids? by Denise » Thu, 2017-06-08 07:50 |
4 |
4,199 |
by Denise Thu, 2017-06-15 04:26 |
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Multistate design output by tong » Wed, 2018-06-20 00:21 |
6 |
4,187 |
by tong Sun, 2018-06-24 23:30 |
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unable to generate the span file with "mp_span_from_pdb.default.linuxgccrelease" from a PDB file by Sajjad » Wed, 2022-11-30 11:40 |
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4,187 |
by FJOM Wed, 2023-05-03 07:21 |
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Problem with symmetric docking by saxen » Fri, 2011-04-29 15:15 |
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4,178 |
by smlewis Mon, 2014-04-21 06:47 |
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Generate fragment file on my computer by jrcf » Mon, 2015-09-21 15:41 |
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4,171 |
by jrcf Mon, 2015-10-05 21:32 |
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Rosetta Holes by zsun12 » Wed, 2015-09-30 11:40 |
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4,166 |
by rmoretti Mon, 2015-10-12 15:20 |
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side chain repacking error by malkeet.singh » Thu, 2017-12-07 04:49 |
4 |
4,141 |
by smlewis Wed, 2017-12-13 09:54 |
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rosetta app by MA » Wed, 2017-07-05 06:52 |
5 |
4,131 |
by smlewis Tue, 2017-07-11 07:53 |
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flexpepdock flag "-packing:unboundrot" by gw » Mon, 2011-07-11 12:23 |
2 |
4,128 |
by Ora Schueler-Furman Mon, 2014-04-21 06:47 |
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RosettaScripts - FastRelax loops by jtmacd » Wed, 2015-11-18 09:32 |
2 |
4,115 |
by jtmacd Fri, 2015-12-04 03:11 |
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Not found some Flags by jrcf » Sat, 2015-09-19 12:08 |
2 |
4,115 |
by jrcf Mon, 2015-09-21 11:10 |
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Modeling of side-chains onto membrane ab initio cluster? by akfried » Thu, 2011-06-23 04:03 |
3 |
4,102 |
by nkemjika Mon, 2014-04-21 06:47 |
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The error of InterfaceAnalyzer by asbelx » Thu, 2017-12-21 19:04 |
3 |
4,100 |
by smlewis Sat, 2017-12-23 15:56 |
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A question on the logic of enzyme design by agulsevin » Thu, 2013-06-13 08:10 |
2 |
4,098 |
by agulsevin Mon, 2014-04-21 06:48 |
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score_jd2.linuxgccrelease documentation by fglaser » Mon, 2011-08-01 04:08 |
1 |
4,096 |
by smlewis Mon, 2014-04-21 06:47 |
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clustering in RosettaRemodel by cheyuk » Wed, 2014-04-23 03:09 |
3 |
4,096 |
by rmoretti Mon, 2014-05-12 08:45 |
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docking with constraints by talavera » Tue, 2013-05-07 01:50 |
1 |
4,090 |
by rmoretti Mon, 2014-04-21 06:47 |
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Docking Prepack protocol working or not ? by MJG » Mon, 2017-04-03 08:02 |
4 |
4,065 |
by MJG Tue, 2017-04-04 23:59 |
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FlexPepDock for protein containing multiple chains by Dimitrov » Mon, 2012-10-08 08:31 |
3 |
4,053 |
by smlewis Mon, 2014-04-21 06:47 |
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Error when running Remodel with EnzDes constraint file by aloshbau » Wed, 2013-04-17 22:23 |
2 |
4,052 |
by aloshbau Mon, 2014-04-21 06:47 |
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Problems running pmut in parallel with openmpi by RMJ » Fri, 2012-09-21 06:25 |
2 |
4,050 |
by RMJ Mon, 2014-04-21 06:47 |
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RosettaDesign error with Option file open failed by xingqing326 » Sun, 2020-04-19 01:56 |
4 |
4,042 |
by xingqing326 Tue, 2020-04-21 19:11 |
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proline patching problem by xun » Tue, 2012-01-03 11:15 |
3 |
4,015 |
by xun Mon, 2014-04-21 06:47 |
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folding ectodomain in membrane ab initio by freedman » Mon, 2015-05-25 21:09 |
3 |
4,008 |
by rmoretti Fri, 2015-06-19 13:53 |
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what does initialize_rigid_body_dofs do? by attesor » Mon, 2015-10-26 05:12 |
3 |
4,008 |
by rmoretti Tue, 2015-11-10 11:35 |
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High energies after loopmodel run by michki » Thu, 2014-05-08 05:14 |
3 |
4,007 |
by rmoretti Mon, 2014-05-12 15:16 |
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Specifying resfile in rosetta scripts by johnnytam100 » Mon, 2019-03-18 02:19 |
4 |
3,991 |
by rmoretti Fri, 2019-03-29 09:30 |
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Lammps or RosettaSurface by StevPChem » Fri, 2016-06-10 10:13 |
3 |
3,989 |
by Anpu Tue, 2018-09-25 18:53 |
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ddG filter gives deltaG calculation number? by jarod » Tue, 2013-05-28 23:43 |
2 |
3,988 |
by jarod Mon, 2014-04-21 06:47 |
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Can only relax one structure at a time by lah435 » Wed, 2012-12-12 01:55 |
3 |
3,982 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop design with length variation by jarod » Thu, 2016-06-16 19:54 |
3 |
3,976 |
by rmoretti Tue, 2016-07-12 09:41 |
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Fastrelax problem by Pernille » Fri, 2014-06-20 00:16 |
2 |
3,971 |
by Pernille Thu, 2014-07-03 07:21 |
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Syntax to extract PDB files from a silent file by lanselibai » Fri, 2014-09-26 13:48 |
1 |
3,967 |
by lanselibai Fri, 2014-09-26 14:58 |
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Can't append or prepend with pepspec by danzinho » Tue, 2015-03-31 01:19 |
3 |
3,962 |
by dswhit Tue, 2015-04-21 10:14 |
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RosettaCM Ignoring Ligand by Delfosse57 » Sun, 2022-12-04 12:05 |
0 |
3,961 |
by Delfosse57 Sun, 2022-12-04 12:05 |
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Missing CS-HM-Rosetta Binary files by Marius1987 » Wed, 2016-02-10 05:52 |
3 |
3,955 |
by Marius1987 Mon, 2016-03-14 04:34 |
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pdb2vall by JadAbbass » Mon, 2013-07-08 12:11 |
3 |
3,947 |
by rmoretti Mon, 2014-04-21 06:48 |
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Ligand dock analysis by sacch » Tue, 2012-05-22 01:20 |
3 |
3,937 |
by glemmon Mon, 2014-04-21 06:47 |
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ddg_monomer: what is the theoretical solution condition for the scoring? by lanselibai » Sat, 2016-04-30 03:26 |
3 |
3,916 |
by smlewis Mon, 2016-05-02 08:20 |
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Executing the clean_pdb.py script by Rkfoury » Fri, 2015-02-20 10:16 |
1 |
3,904 |
by lanselibai Tue, 2015-02-24 02:36 |
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Extract PDB structures from database by cossio » Mon, 2018-01-29 09:30 |
3 |
3,903 |
by rmoretti Fri, 2018-11-23 11:23 |
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Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file? by lanselibai » Sun, 2014-11-16 10:26 |
3 |
3,903 |
by G Mustafa Thu, 2018-10-18 05:31 |
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strange effect in: SymDock.linuxgccrelease by ast » Tue, 2013-06-11 11:05 |
3 |
3,897 |
by ast Mon, 2014-04-21 06:48 |
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Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking) by snorp » Mon, 2014-04-14 13:01 |
2 |
3,895 |
by jadolfbr Mon, 2014-05-12 10:41 |
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Enzdes constraint file not defined correctly by eyong123 » Fri, 2015-03-27 07:16 |
3 |
3,895 |
by rmoretti Thu, 2015-04-16 10:38 |
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Problem with SymmDock in helical symmetry by mumdonar » Wed, 2013-09-18 03:59 |
2 |
3,887 |
by mumdonar Mon, 2014-04-21 06:48 |
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Error encountered during Rosetta loop modeling by max » Tue, 2014-11-25 02:17 |
3 |
3,873 |
by max Thu, 2014-11-27 02:56 |
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mr_protocols with symmetry and ligand by jhm13c » Mon, 2017-02-27 11:59 |
4 |
3,862 |
by jhm13c Thu, 2017-03-02 12:01 |
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ddG Monomer Low Res Protocol Convergence by harshkhare » Thu, 2012-03-01 00:45 |
2 |
3,857 |
by harshkhare Mon, 2014-04-21 06:47 |
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Structure determination combining X-ray diffraction data and NMR chemical shift by MajorID » Mon, 2011-10-17 19:55 |
2 |
3,856 |
by rmoretti Mon, 2014-04-21 06:47 |
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Relax is resulting in a Segmentation Fault by brspurri » Thu, 2017-08-24 18:46 |
3 |
3,847 |
by brspurri Sat, 2017-08-26 07:08 |
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How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI by kingljy » Sun, 2017-09-24 18:37 |
3 |
3,840 |
by rmoretti Tue, 2017-10-10 09:58 |
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conformational sampling of multi domain protein by dhirajks » Tue, 2017-07-04 11:20 |
4 |
3,836 |
by jrporter Wed, 2017-07-05 06:30 |
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rotamer library in coupled_moves by mtyras » Fri, 2015-05-29 07:46 |
2 |
3,829 |
by mtyras Mon, 2015-06-08 03:18 |
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Error with -patch_selectors by subha » Tue, 2017-06-06 14:40 |
4 |
3,826 |
by subha Fri, 2017-06-09 15:42 |
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Docking seems to not parse the -nstruct flag by rosend » Tue, 2015-11-17 12:01 |
2 |
3,822 |
by rosend Tue, 2015-11-17 12:12 |
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Multiple Chain Comparative Modeling - End result is not even close to template structure by eskici » Wed, 2012-08-29 08:09 |
2 |
3,819 |
by eskici Mon, 2014-04-21 06:47 |
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Floppytail modelling by felipet » Fri, 2011-06-24 09:23 |
2 |
3,803 |
by felipet Mon, 2014-04-21 06:47 |
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Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB" by brspurri » Fri, 2017-03-24 10:52 |
3 |
3,801 |
by brspurri Fri, 2017-03-24 11:35 |
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How to preserve ACE/NME termini? by nitroamos » Tue, 2018-05-22 13:07 |
3 |
3,800 |
by rmoretti Thu, 2018-06-28 12:44 |
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Running RosettaHoles2 by weehee » Wed, 2013-02-13 09:35 |
3 |
3,796 |
by weehee Mon, 2014-04-21 06:47 |
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printing our per-residue energies including H-bonding energies by vijayan » Tue, 2013-07-02 08:51 |
2 |
3,782 |
by rmoretti Mon, 2014-04-21 06:48 |
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Fnat and Irms are nan in score.sc from docking_protocol? by cossio » Sun, 2015-09-13 07:34 |
2 |
3,767 |
by rmoretti Thu, 2015-09-17 12:47 |
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Problem with mpirun/mpiexec by ahansel » Fri, 2020-07-10 08:37 |
1 |
3,766 |
by rmoretti Fri, 2020-07-10 09:59 |
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relax constraints not minimized by m_grisewood » Fri, 2012-08-10 08:31 |
2 |
3,764 |
by m_grisewood Mon, 2014-04-21 06:47 |
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Compiling Rosetta 3.3 on Linux Mint by proteinproteindock » Thu, 2011-09-01 16:05 |
2 |
3,758 |
by proteinproteindock Mon, 2014-04-21 06:47 |
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CSrosetta run problem by erin_cutts » Fri, 2013-06-28 09:52 |
2 |
3,749 |
by erin_cutts Mon, 2014-04-21 06:48 |
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Trouble enforcing a disulfide in loop building by chelsell » Sun, 2015-05-10 16:31 |
2 |
3,743 |
by chelsell Wed, 2015-05-27 14:36 |
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Missing atoms and cannot find atom pose when refining ligand position with EM density by BuddySphinx » Mon, 2018-12-31 16:22 |
2 |
3,742 |
by e3lm Tue, 2021-09-14 10:02 |
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scoring input pdbs as the same as docking score by hamedkhakzad » Fri, 2016-07-01 07:15 |
3 |
3,733 |
by rmoretti Tue, 2016-07-12 09:05 |
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RAbD with N-term，Proline-like ncaa returns segmentation fault during CCDEndsGraftMover by CordycepsLin » Sun, 2022-02-06 19:09 |
9 |
3,715 |
by CordycepsLin Wed, 2022-02-09 19:39 |
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Alanine Scanning by gjbartlett » Mon, 2013-08-05 07:02 |
1 |
3,692 |
by rmoretti Mon, 2014-04-21 06:48 |
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Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease? by lanselibai » Thu, 2015-01-08 03:23 |
3 |
3,691 |
by lanselibai Tue, 2015-01-13 14:25 |
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