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Rosetta 3 - Applications
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Add missing residues in loop modeling by exchhattu » Thu, 2013-06-20 17:38 |
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3,334 |
by smlewis Mon, 2014-04-21 06:48 |
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Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol? by cossio » Thu, 2015-02-05 07:10 |
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2,038 |
by rmoretti Mon, 2015-02-09 12:33 |
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Enzyme Design FlexBB Protocol Bug: DNA/RNA handling by kettner » Fri, 2019-06-14 14:16 |
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1,579 |
by rmoretti Mon, 2019-06-24 13:46 |
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residue_energy_breakdown of a protein-ligand complex. by sam_dc » Tue, 2021-05-18 04:45 |
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818 |
by rmoretti Tue, 2021-05-18 07:21 |
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Snugdock_error by luicui » Thu, 2017-02-09 21:06 |
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1,469 |
by smlewis Thu, 2017-02-09 21:50 |
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ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly' by smiruthi » Mon, 2011-12-12 14:27 |
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2,532 |
by rmoretti Mon, 2014-04-21 06:47 |
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cluster error by sudhar » Fri, 2011-06-17 05:58 |
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2,631 |
by rmoretti Mon, 2014-04-21 06:47 |
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Enzyme design output silent file and score file by deltag » Fri, 2012-09-28 13:07 |
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2,166 |
by rmoretti Mon, 2014-04-21 06:47 |
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Question on restraining receptor symmetry when docking ligand by subha » Fri, 2018-07-06 21:59 |
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1,253 |
by rmoretti Fri, 2018-08-03 08:16 |
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RosettaMatch by xingqing326 » Mon, 2019-07-22 13:14 |
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1,472 |
by rmoretti Mon, 2019-08-26 12:57 |
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Flexible docking using rosetta density-fitting for DNA by helm » Thu, 2012-06-14 23:43 |
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2,488 |
by smlewis Mon, 2014-04-21 06:47 |
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Interface Analyzer Segmentation Fault by h_trasatti » Tue, 2017-02-21 12:48 |
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1,971 |
by smlewis Tue, 2017-02-21 14:10 |
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Warning: Fold tree is not set properly for density scoring by ahansel » Mon, 2020-07-13 10:50 |
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983 |
by danpf Tue, 2020-07-14 10:27 |
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InterfaceAnalyzer -resfile by gw » Wed, 2011-11-02 16:01 |
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2,631 |
by smlewis Mon, 2014-04-21 06:47 |
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Using different number of 9-mers (UPDATED) by JadAbbass » Mon, 2017-08-28 07:20 |
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1,629 |
by rmoretti Mon, 2017-09-04 10:33 |
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docking with capping groups by xavierfradera » Sun, 2018-11-04 16:17 |
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1,256 |
by maral.adeli-kou... Wed, 2020-01-22 12:41 |
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Undesirable behaviour of PoseFromSFRBuilder regarding Hydrogen atoms by Corvin » Wed, 2020-12-02 04:00 |
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841 |
by rmoretti Wed, 2020-12-02 07:27 |
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Design with limited number of aminoacids at given position by sdh_h » Sun, 2016-12-04 03:44 |
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1,635 |
by smlewis Thu, 2016-12-08 15:50 |
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dssp by MA » Thu, 2017-10-05 09:34 |
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1,516 |
by rmoretti Tue, 2017-10-10 09:54 |
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[LoopModelerMover] ERROR: Can't build a fold tree from a loop with an unspecified cut point. by dgm3 » Sun, 2021-12-26 18:32 |
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805 |
by dgm3 Fri, 2021-12-31 17:42 |
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How to use base_pair_constraint for RNA as a constraint term？ by yels » Sat, 2021-04-03 01:19 |
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773 |
by everyday847 Sun, 2021-04-04 12:48 |
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problem with modelling of protein (140 and 150 residues respectively) by krlitros87 » Wed, 2014-10-22 09:39 |
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1,869 |
by rmoretti Thu, 2014-10-23 13:55 |
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Homology modelling applies alignment wrong by bernhardcl » Thu, 2015-08-06 09:39 |
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1,802 |
by bernhardcl Tue, 2015-08-11 09:11 |
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comparative modeling of a homodimer by banshee » Mon, 2017-01-09 18:34 |
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2,061 |
by rmoretti Wed, 2017-01-11 13:00 |
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[Solved] Resetting a pose with RigidBodyTransMover by bjharris » Wed, 2021-01-13 14:01 |
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780 |
by bjharris Fri, 2021-01-22 17:34 |
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duplex RNA by amir_tagh » Thu, 2021-08-05 06:34 |
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726 |
by everyday847 Mon, 2021-08-16 10:43 |
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Score.sc file showing total score 0 for all protein structures created by aanshi » Wed, 2022-11-23 11:13 |
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2,902 |
by nannemdp Mon, 2022-11-28 09:39 |
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No interface for protein - Interface Analyzer by aloshbau » Tue, 2013-05-21 21:00 |
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2,553 |
by jarod Mon, 2014-04-21 06:47 |
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splitfile.py by saladi » Fri, 2018-03-30 10:31 |
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1,465 |
by rmoretti Tue, 2018-04-10 15:34 |
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How can I model ligands in comparative modeling by Morrian_Lynn » Thu, 2020-02-20 09:57 |
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976 |
by danpf Fri, 2020-02-21 17:05 |
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Docking Analysis and Metrics in RosettaLigand. by sam_dc » Tue, 2021-04-20 03:54 |
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1,219 |
by rmoretti Tue, 2021-04-20 13:27 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
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2,376 |
by rmoretti Mon, 2014-05-12 15:08 |
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radius of gyration as constrain by dhirajks » Sat, 2018-05-05 23:00 |
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1,418 |
by smlewis Mon, 2018-05-07 11:42 |
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Antibody Modelling by luicui » Mon, 2017-01-23 21:30 |
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1,954 |
by smlewis Mon, 2017-02-06 20:46 |
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blast database error by jessye » Sun, 2017-12-03 23:59 |
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1,549 |
by smlewis Mon, 2017-12-04 12:18 |
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AbinitioRelax Disulfide Bonds are not being retained by brspurri » Wed, 2011-09-28 13:55 |
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4,055 |
by parmef Mon, 2014-04-21 06:47 |
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Ligand creation by Prasanth Kumar » Fri, 2013-08-02 09:48 |
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2,203 |
by rmoretti Mon, 2014-04-21 06:48 |
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Multistate design issues with -run:msd_job_dist option and MSDMover by elaine.thai » Wed, 2020-05-13 18:07 |
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2,377 |
by tangzi Mon, 2023-03-06 09:50 |
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trouble in floppytail modelling by ytao » Thu, 2013-06-27 13:15 |
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2,201 |
by ytao Mon, 2014-04-21 06:48 |
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Executing the clean_pdb.py script by Rkfoury » Fri, 2015-02-20 10:16 |
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3,513 |
by lanselibai Tue, 2015-02-24 02:36 |
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Enzyme Design - Score File by nwhoppe » Thu, 2016-04-07 15:11 |
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1,856 |
by rmoretti Fri, 2016-04-08 07:39 |
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Rosetta_cm Partial Threading Removing Parts of Sequence by gszwabowski » Thu, 2019-06-20 12:30 |
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1,331 |
by rmoretti Mon, 2019-06-24 13:43 |
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Holes output interpretation by lah435 » Mon, 2012-06-04 15:02 |
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2,226 |
by smlewis Mon, 2014-04-21 06:47 |
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Comparative modeling using a two chained template for a one chain structure by ahmadkhalifa » Mon, 2017-12-18 11:00 |
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1,314 |
by rmoretti Mon, 2018-01-15 16:14 |
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De novo water predictions using SPaDES by MNP1986 » Mon, 2019-03-25 07:53 |
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1,444 |
by matteoferla Tue, 2020-08-04 09:30 |
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Comparative modeling by MRH » Mon, 2013-08-19 23:08 |
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2,223 |
by smlewis Mon, 2014-04-21 06:48 |
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SymDock with constraints by felipet » Thu, 2015-05-14 09:01 |
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2,817 |
by rmoretti Mon, 2015-05-25 11:49 |
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Predicting the part of protein strcutrue by ksy141 » Tue, 2018-10-16 11:47 |
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1,213 |
by jadolfbr Fri, 2018-11-09 14:28 |
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/database folder after running "install_dependencies.pl" size 657 GB? by Danielsebas » Tue, 2019-09-03 03:32 |
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1,073 |
by danpf Tue, 2019-09-03 10:15 |
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Changing rosetta scoring to favour less hydrophobic areas by daniloboskovic » Thu, 2020-05-21 03:03 |
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900 |
by vmulligan Thu, 2020-05-21 18:33 |
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Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:30 |
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785 |
by taylorjones Wed, 2021-06-09 16:38 |
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error mesages from RosettaDock by AlanZhao » Mon, 2011-03-21 11:42 |
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2,318 |
by smlewis Mon, 2014-04-21 06:47 |
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No output with docking full protocol by JulienO » Mon, 2016-05-30 02:16 |
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1,716 |
by rmoretti Fri, 2016-06-17 10:24 |
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score and relax by Prasanth Kumar » Thu, 2013-05-02 05:09 |
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3,023 |
by jadolfbr Mon, 2014-04-21 06:47 |
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relax VS. backrub by jiongzhang » Mon, 2012-07-02 14:52 |
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2,302 |
by smlewis Mon, 2014-04-21 06:47 |
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JD2 MPI by jrcf » Wed, 2015-10-28 14:45 |
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2,013 |
by rmoretti Sat, 2015-10-31 08:57 |
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RosettaLigand Docking by Dinesh Kumar » Mon, 2018-01-15 20:54 |
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1,858 |
by rmoretti Tue, 2018-01-16 07:24 |
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is it necessary to always run relax before any Rosetta by mainzer » Fri, 2019-04-12 01:35 |
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1,573 |
by rmoretti Wed, 2019-07-10 09:47 |
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How to freeze ligand during FastRelax? by dnamkr » Thu, 2020-01-02 14:53 |
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1,244 |
by aloshbau Fri, 2020-01-10 16:48 |
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pepspec anchor dock by Andre Serobian » Tue, 2020-07-28 05:51 |
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938 |
by Andre Serobian Tue, 2020-07-28 23:26 |
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Surface Docking Crash (continued) by dkozuch » Tue, 2017-09-12 06:18 |
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1,389 |
by rmoretti Tue, 2017-10-10 10:08 |
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AbinitioRelax - Error with flags by jmschu » Wed, 2018-11-21 17:36 |
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1,776 |
by rmoretti Fri, 2018-11-23 07:59 |
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profit program in antibody design by tzhou » Tue, 2013-10-15 23:29 |
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2,564 |
by rmoretti Mon, 2014-04-21 06:48 |
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Surface accessible residue as a constraint. by arthuc01 » Fri, 2012-03-09 23:27 |
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2,029 |
by smlewis Mon, 2014-04-21 06:47 |
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how to generate Fragments using up to 2001 structures only by oppopomoz » Sat, 2015-07-25 00:43 |
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1,810 |
by rmoretti Thu, 2015-08-06 08:57 |
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Can I use rosetta binaries built in one linux system to another linux system? by Danielsebas » Wed, 2019-09-18 06:49 |
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1,155 |
by rmoretti Wed, 2019-09-18 10:36 |
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[Solved] RosettaAntibody3 - Grafting step is failing to detect H3 from the input sequence by brspurri » Mon, 2021-01-04 16:46 |
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960 |
by brspurri Mon, 2021-01-18 18:14 |
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score_jd2.linuxgccrelease documentation by fglaser » Mon, 2011-08-01 04:08 |
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3,625 |
by smlewis Mon, 2014-04-21 06:47 |
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PDB file name too long to be handled by file system by dave » Thu, 2019-08-08 03:10 |
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1,063 |
by rmoretti Mon, 2019-08-26 12:17 |
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minimize_with_cst and convert_to_cst_file for ddG_monomer issues/confusion by Kharlamov1317a » Mon, 2020-09-21 08:46 |
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1,398 |
by Kharlamov1317a Wed, 2020-10-07 08:26 |
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Stepwise Monte Carlo - errors with ResidueTypeSet and Disulfides by user42 » Wed, 2021-07-21 20:34 |
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712 |
by everyday847 Fri, 2021-07-30 13:26 |
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Small molecule dimer/trimer/etc docking by lukasz » Tue, 2022-10-04 06:49 |
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1,204 |
by rmoretti Tue, 2022-10-04 07:57 |
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modeling 4 linkers between 2 domains by pdbb » Thu, 2013-05-16 08:23 |
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2,191 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg_monomer with -ddg::local_opt_only true, will it affect other chains that are close? by cossio » Fri, 2014-12-26 13:11 |
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1,843 |
by rmoretti Tue, 2015-01-13 07:44 |
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cluster.linuxgccrelease Killed error by samuelrpita » Fri, 2015-11-20 05:56 |
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2,075 |
by rmoretti Tue, 2015-11-24 16:07 |
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loop design for Conformational bias by dhirajks » Thu, 2019-05-09 21:22 |
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1,260 |
by jadolfbr Fri, 2019-05-10 07:53 |
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error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease by xinmiaohe » Thu, 2020-01-30 22:09 |
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1,568 |
by xinmiaohe Fri, 2020-01-31 08:23 |
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Representing Cross-linked nitrogens by jjlee2 » Sat, 2011-11-26 18:42 |
1 |
2,210 |
by smlewis Mon, 2014-04-21 06:47 |
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shape complementarity by holdenj » Fri, 2022-07-15 13:24 |
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493 |
by rmoretti Fri, 2022-07-15 13:50 |
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Script for loop modeling: how to define loop sequence by batch2k » Thu, 2014-10-30 12:58 |
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1,952 |
by jadolfbr Fri, 2014-10-31 08:45 |
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"install_dependencies.pl" script: an optimization of HDD space during nr-pfilt data extracting and formatting stage by Corvin » Thu, 2019-10-10 02:20 |
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1,173 |
by danpf Thu, 2019-10-10 09:55 |
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How to select docked models by Sunyp_IM » Mon, 2020-06-22 00:50 |
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861 |
by ssrb Mon, 2020-06-22 13:12 |
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antibody protocol fails by hamedkhakzad » Mon, 2019-08-19 07:43 |
1 |
1,134 |
by smlewis Tue, 2019-10-22 09:45 |
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FlexPepDock in RosettaScripts keeps running by gw » Tue, 2012-08-21 12:31 |
1 |
2,376 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta_scripts error, Got some signal... It is:6 by jhm13c » Fri, 2017-04-14 14:05 |
1 |
1,792 |
by rmoretti Sat, 2017-04-15 13:30 |
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Relax with multiple small molecules by jharamesh » Sun, 2019-05-26 19:34 |
1 |
1,369 |
by rmoretti Mon, 2019-06-24 15:19 |
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Ddg filter threshold value? by chrisHKL » Fri, 2020-02-28 15:01 |
1 |
954 |
by rmoretti Wed, 2020-03-04 09:56 |
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interface_delta ligand_docking by Prasanth Kumar » Tue, 2013-06-18 08:37 |
1 |
2,371 |
by rmoretti Mon, 2014-04-21 06:48 |
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Flexible peptide docking with flexible receptor backbone by tevang » Fri, 2012-09-14 11:18 |
1 |
2,506 |
by smlewis Mon, 2014-04-21 06:47 |
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Generating non-redundat dataset for loop models by dario.corrada » Wed, 2016-03-09 03:00 |
1 |
1,620 |
by smlewis Wed, 2016-03-09 04:11 |
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Model two domain protein by sn » Sat, 2017-05-06 13:21 |
1 |
1,644 |
by rmoretti Mon, 2017-05-15 08:54 |
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rosetta's keyword list by fred » Tue, 2014-01-21 06:03 |
1 |
2,476 |
by rmoretti Mon, 2014-04-21 06:48 |
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Two questions on the RosettaScripts flexbb-interfacedesign.xml by johnnytam100 » Fri, 2019-03-15 04:54 |
1 |
1,365 |
by rmoretti Fri, 2019-03-29 09:58 |
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Error with FlexPepDock by aloshbau » Sat, 2013-08-10 11:51 |
1 |
2,378 |
by rmoretti Mon, 2014-04-21 06:48 |
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Snugdock+ensembledock usage by Anouk » Mon, 2014-09-22 08:09 |
1 |
2,714 |
by jadolfbr Mon, 2014-10-20 13:42 |
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Should I trust the score output from relax used with a protein complex? by cossio » Thu, 2015-05-07 06:08 |
1 |
1,881 |
by rmoretti Mon, 2015-05-25 12:37 |
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C-termini remodelling of dimeric structure removes second chain by LeonhardJS » Wed, 2021-10-13 06:23 |
1 |
747 |
by LeonhardJS Fri, 2021-11-12 01:20 |
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cross correlation calculation by jingwei xu » Sat, 2016-04-16 19:11 |
2 |
2,341 |
by jingwei xu Wed, 2016-05-04 23:26 |
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Segmentation Fault in Fragment picking by ashu4487 » Fri, 2018-07-06 20:47 |
2 |
2,758 |
by ashu4487 Mon, 2018-07-16 19:24 |
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De novo structure building with medium resolution map by BuddySphinx » Tue, 2019-07-02 09:07 |
2 |
1,639 |
by BuddySphinx Tue, 2019-07-02 12:03 |
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