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Rosetta 3 - Applications
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kcenters_clustering_of_fragments by bjharris » Mon, 2019-07-01 16:16 |
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1,549 |
by bjharris Wed, 2020-07-01 23:25 |
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number of structures in homology modeling for cluster analysis by pdbb » Fri, 2013-04-12 08:52 |
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2,684 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg_monomer "ERROR: seqpos >= 1" by cossio » Fri, 2015-10-02 12:20 |
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2,309 |
by rmoretti Fri, 2015-10-02 12:30 |
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manually defining CDRs in antibody modelling by gard.nelson » Fri, 2020-07-10 13:31 |
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1,305 |
by brspurri Wed, 2021-01-20 08:11 |
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FloppyTail options error by DmitriiN » Fri, 2016-11-11 02:54 |
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1,887 |
by smlewis Fri, 2016-11-11 08:33 |
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LoopModeler mover unable to determine cut point by gszwabowski » Mon, 2020-06-01 13:12 |
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1,623 |
by matteoferla Thu, 2020-07-02 07:27 |
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docking with constraints by talavera » Tue, 2013-05-07 01:50 |
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4,091 |
by rmoretti Mon, 2014-04-21 06:47 |
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cluster error by sudhar » Fri, 2011-06-17 05:58 |
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3,020 |
by rmoretti Mon, 2014-04-21 06:47 |
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score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059' by sn » Fri, 2017-03-24 12:26 |
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1,900 |
by rmoretti Fri, 2017-03-24 13:39 |
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protein interction design by Negarsardar » Wed, 2019-05-15 12:01 |
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1,515 |
by rmoretti Wed, 2019-07-10 09:24 |
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get an increased energy after energy minimization when using different score functions for repacking and energy minimization by xinmiaohe » Fri, 2020-02-07 11:59 |
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1,425 |
by xinmiaohe Fri, 2020-02-07 13:52 |
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Inquiry about MPI-Rosetta: Issue with -nstruct Parameter by serena » Wed, 2024-01-24 00:59 |
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256 |
by rmoretti Wed, 2024-01-24 08:46 |
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ArchiveManager -- spinning down by Marius1987 » Fri, 2016-12-23 03:10 |
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1,890 |
by smlewis Fri, 2016-12-23 07:04 |
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Abinitio error: std::out_of_range: basic_string by Harley Worthy » Tue, 2017-10-31 15:20 |
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2,257 |
by Harley Worthy Thu, 2017-11-02 08:53 |
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how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot? by Danielsebas » Tue, 2019-09-24 03:51 |
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1,635 |
by smlewis Tue, 2019-09-24 12:43 |
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cluster docked pdbs by kwu030 » Wed, 2023-06-14 22:48 |
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597 |
by rmoretti Wed, 2023-06-28 12:36 |
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InterfaceAnalyzer -resfile by gw » Wed, 2011-11-02 16:01 |
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2,943 |
by smlewis Mon, 2014-04-21 06:47 |
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PDB moves after relaxing by Hr13b » Fri, 2018-07-27 13:12 |
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1,534 |
by smlewis Fri, 2018-07-27 13:32 |
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can remodel add loops in one chain in multichain PDB structure? by ksteczk » Fri, 2020-05-01 06:26 |
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1,482 |
by matteoferla Mon, 2020-05-04 01:43 |
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Binding energy contribution broken down by residue by brspurri » Tue, 2013-07-23 12:47 |
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2,869 |
by rmoretti Mon, 2014-04-21 06:48 |
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Protein-DNA Docking using RosettaScripts? by brspurri » Fri, 2013-06-07 09:06 |
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4,531 |
by rmoretti Mon, 2014-04-21 06:48 |
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RosettaCM/hybridize by kywei » Wed, 2021-04-28 09:56 |
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1,080 |
by vmulligan Wed, 2021-04-28 12:59 |
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Ab-initio modeling on part of the protein by xiayanlawrence » Thu, 2013-12-19 07:45 |
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3,499 |
by rmoretti Mon, 2014-04-21 06:48 |
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latest version of rosetta unable to build models by pramod » Mon, 2014-11-03 11:31 |
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2,903 |
by rmoretti Tue, 2014-11-04 10:33 |
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RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist. by kamau » Fri, 2017-12-01 08:42 |
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1,754 |
by kamau Wed, 2017-12-13 14:31 |
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ERROR: ResidueType::add_ring: Requested atoms don't exist in this ResidueType! by walidabualafia » Thu, 2023-07-20 09:44 |
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433 |
by rmoretti Thu, 2023-07-20 10:08 |
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Adding 'virtual' residues for N- and C-terminal optimisation by Derek Smith » Thu, 2014-08-14 23:18 |
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2,374 |
by jadolfbr Fri, 2014-10-31 09:00 |
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How to calculate dG? by yperez » Mon, 2012-10-22 07:28 |
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3,131 |
by smlewis Mon, 2014-04-21 06:47 |
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Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo by zharmad » Fri, 2019-08-23 01:16 |
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1,443 |
by everyday847 Fri, 2019-08-23 04:08 |
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Loopmodel with DNA has no energy score by Nicky_Learning_... » Sun, 2015-05-10 19:31 |
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2,334 |
by rmoretti Mon, 2015-05-25 12:30 |
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VH-VL Orientation in antibody by sujigeorge1979 » Mon, 2019-06-17 01:23 |
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1,802 |
by jeliazkov Mon, 2019-06-17 06:03 |
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hybrid approach - comparative and ab initio modelling by eprates » Wed, 2019-03-20 11:58 |
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1,525 |
by rmoretti Fri, 2019-03-29 09:45 |
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Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0. by daniloboskovic » Fri, 2019-11-08 08:24 |
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3,290 |
by Payne Tue, 2022-06-21 07:25 |
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Loop modeling: KIC with fragments producing unusual models by kamau » Mon, 2015-06-01 12:06 |
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2,290 |
by rmoretti Sat, 2015-06-20 20:07 |
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RosettaMatch outputs by mwfranklin » Tue, 2016-10-11 11:46 |
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2,294 |
by rmoretti Fri, 2016-10-14 08:56 |
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Problem passing a list of PDB files to minimize_with_cst by dolevrahat » Sun, 2018-11-18 16:13 |
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1,911 |
by rmoretti Wed, 2018-11-21 15:31 |
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AbinitioRelax Disulfide Bonds are not being retained by brspurri » Wed, 2011-09-28 13:55 |
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4,461 |
by parmef Mon, 2014-04-21 06:47 |
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FloppyTail vs. Remodel for linkers by attesor » Mon, 2014-07-07 08:36 |
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2,355 |
by smlewis Mon, 2014-07-07 11:58 |
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Error in Loop modeling and other queries by ashu4487 » Wed, 2016-05-11 18:23 |
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2,276 |
by rmoretti Fri, 2016-06-17 10:15 |
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"Angle constraint: 0-length bonds" error by purvi24 » Sun, 2019-07-28 10:09 |
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1,661 |
by rmoretti Mon, 2019-08-26 12:49 |
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Instructing design scripts to use noncanonical AA instead of canonical by zcrook » Tue, 2014-11-25 10:43 |
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2,154 |
by rmoretti Wed, 2014-11-26 07:51 |
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Modeling the structure of camel single domain antibody by Sunyp_IM » Mon, 2018-01-08 00:34 |
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2,322 |
by Sunyp_IM Mon, 2018-01-08 00:55 |
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Usage of the TaskOperations "RestrictToCDRsAndNeighbors" by johnnytam100 » Wed, 2019-04-10 02:58 |
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1,649 |
by rmoretti Wed, 2019-07-10 10:10 |
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Remodel: the pose does not have residue with chain=H, PDBnum=114 by lanselibai » Wed, 2019-12-25 13:35 |
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2,260 |
by lanselibai Fri, 2019-12-27 09:38 |
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Should I be stripping water molecules from my input structure for Rosetta Design? by chrisHKL » Wed, 2021-03-24 14:22 |
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1,169 |
by smlewis Wed, 2021-03-24 14:59 |
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Disulfidize- "Extra content at the end of the document" by ldlamini » Tue, 2022-05-17 02:37 |
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1,150 |
by rmoretti Tue, 2022-05-17 07:29 |
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score application by Hongtham » Tue, 2014-12-23 06:38 |
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2,071 |
by rmoretti Fri, 2015-01-02 11:06 |
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Membrane Abinitio modeling by bharat_46010 » Mon, 2017-03-13 22:39 |
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1,775 |
by benhardy Wed, 2020-09-30 04:24 |
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missing atom number 5 atom name CB by ajaniharesh » Fri, 2019-04-26 12:08 |
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1,897 |
by rmoretti Fri, 2019-04-26 12:13 |
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fixing sequence during grafting in antibody_designer by COM » Fri, 2020-01-24 11:38 |
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1,431 |
by jadolfbr Tue, 2020-01-28 09:13 |
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the results obtained after docking using RosettaDock and ZDOCK by aha » Thu, 2024-01-04 21:13 |
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310 |
by rmoretti Thu, 2024-01-11 14:39 |
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molfile_to_params script error by pablogalazdavison » Tue, 2015-07-07 21:22 |
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2,531 |
by rmoretti Tue, 2015-07-14 14:59 |
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Threading with Ligand by ekwan » Thu, 2018-12-06 15:10 |
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1,618 |
by rmoretti Fri, 2019-03-29 13:21 |
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Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease by bdzhh » Tue, 2019-09-17 17:02 |
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1,502 |
by jadolfbr Thu, 2019-09-19 08:53 |
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Ligand docking at specific orientation by ShiranBZ » Mon, 2020-04-13 20:46 |
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1,262 |
by matteoferla Mon, 2020-05-04 02:02 |
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Old Knotfind algorithm by Martin Floor » Thu, 2022-09-22 07:28 |
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1,157 |
by rmoretti Fri, 2022-09-23 09:38 |
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Docking on mpi. by Pernille » Mon, 2014-07-28 08:40 |
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3,021 |
by rmoretti Mon, 2014-08-04 14:51 |
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ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result??? by Ryhon Wang » Mon, 2016-01-04 22:36 |
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3,149 |
by rmoretti Tue, 2016-01-05 08:35 |
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Mutating phosphorylated residues to "canonical" residues and vice versa by ValentinaSora » Mon, 2019-05-20 05:58 |
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2,251 |
by rmoretti Wed, 2019-07-10 09:22 |
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remodel ERROR: unrecognized mm_atom_type_name RGU by daniloboskovic » Sat, 2020-02-22 11:55 |
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1,516 |
by daniloboskovic Tue, 2020-02-25 08:28 |
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error mesages from RosettaDock by AlanZhao » Mon, 2011-03-21 11:42 |
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2,637 |
by smlewis Mon, 2014-04-21 06:47 |
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how to run my openmp programe in rosetta3.3? by lihowe » Mon, 2012-02-27 23:43 |
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2,435 |
by smlewis Mon, 2014-04-21 06:47 |
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Symmetric docking with multiple chains as asymmetric unit by sarah29 » Tue, 2013-11-05 20:24 |
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3,250 |
by rmoretti Mon, 2014-04-21 06:48 |
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Constraint generator by Alison_Yajie » Wed, 2020-06-17 20:14 |
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1,208 |
by Alison_Yajie Wed, 2020-06-17 20:35 |
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PyIgClassify cannot renumber and label CDRs my Nanobody-Antigen complex for RabD by WBNeT » Fri, 2023-07-07 10:58 |
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484 |
by jadolfbr Mon, 2023-07-10 09:05 |
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Ligand Docking with ARLS by cam11 » Thu, 2016-06-23 09:34 |
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2,200 |
by rmoretti Thu, 2016-06-23 10:55 |
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Problem with AtomPair constraint by jarek » Tue, 2012-10-09 07:28 |
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2,419 |
by smlewis Mon, 2014-04-21 06:47 |
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Error Interface analyser by jrcf » Thu, 2017-06-22 12:55 |
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1,903 |
by smlewis Thu, 2017-06-22 13:31 |
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Relaxing protein-RNA complexes by rkirchdo » Fri, 2018-08-03 08:50 |
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1,664 |
by rmoretti Fri, 2018-08-24 11:28 |
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score_jd2.linuxgccrelease documentation by fglaser » Mon, 2011-08-01 04:08 |
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4,099 |
by smlewis Mon, 2014-04-21 06:47 |
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Relax with a ligand is messing up the coordinates of the ligand by brspurri » Sat, 2015-01-24 12:39 |
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2,950 |
by rmoretti Mon, 2015-01-26 12:15 |
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Difference between movemap and -pivot_residues by aloshbau » Wed, 2016-02-24 13:21 |
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2,212 |
by rmoretti Wed, 2016-02-24 14:39 |
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weights for pH_protocol by fmerino » Wed, 2017-04-26 07:14 |
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2,171 |
by rmoretti Thu, 2017-04-27 07:10 |
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broker domain insertion by dhirajks » Sun, 2018-05-06 12:55 |
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1,648 |
by rmoretti Fri, 2018-05-18 12:28 |
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The relax qustion of Rosetta VIP by asbelx » Mon, 2019-06-10 07:52 |
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1,481 |
by rmoretti Mon, 2019-06-24 14:42 |
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Help with enzyme design files by Wenithor » Thu, 2021-04-29 10:33 |
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1,057 |
by rmoretti Thu, 2021-04-29 10:44 |
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Antibody Docking application by Maryam_tabasinezhad » Sat, 2015-09-05 09:58 |
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2,414 |
by jadolfbr Wed, 2015-09-09 12:35 |
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Modelling at defined pH - for pmutscan - pH:mode not working by cagfa1 » Tue, 2022-03-15 04:05 |
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1,474 |
by Rituparna_Saman... Wed, 2022-03-23 11:21 |
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Representing Cross-linked nitrogens by jjlee2 » Sat, 2011-11-26 18:42 |
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2,504 |
by smlewis Mon, 2014-04-21 06:47 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Mon, 2016-07-25 13:35 |
1 |
2,425 |
by gsuchunli Mon, 2016-07-25 13:56 |
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MPdocking I_sc by jrcf » Mon, 2017-07-31 16:10 |
1 |
2,015 |
by rmoretti Thu, 2017-08-03 09:29 |
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Membrane Abinitio modeling error by jkyan007 » Thu, 2020-10-29 03:30 |
1 |
1,206 |
by noahC_noahDo Tue, 2020-11-17 10:35 |
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fold and dock protocol not working by ytao » Mon, 2012-11-26 15:33 |
1 |
2,473 |
by smlewis Mon, 2014-04-21 06:47 |
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submit_NGK.py not creating output files by nkato2 » Wed, 2013-08-28 23:37 |
1 |
2,545 |
by rmoretti Mon, 2014-04-21 06:48 |
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why is talaris2014 scoring fuction not used with ligand docking? by banshee » Fri, 2016-09-09 01:19 |
1 |
2,180 |
by rmoretti Fri, 2016-09-09 07:47 |
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Fastrelax problem by Pernille » Tue, 2014-06-17 08:59 |
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2,136 |
by Pernille Fri, 2014-06-20 00:17 |
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'standard.wts' does not exist by almeida85 » Mon, 2020-09-14 02:26 |
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1,346 |
by rmoretti Mon, 2020-09-14 06:36 |
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Rosetta DNA - Protein-DNA scoring function and binding energy by tanoramb » Tue, 2012-05-08 14:00 |
1 |
4,604 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta Holes by zsun12 » Wed, 2015-09-30 11:40 |
1 |
4,170 |
by rmoretti Mon, 2015-10-12 15:20 |
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Rosetta scripts crash in CM workflow by jlburkhead » Tue, 2019-12-03 22:55 |
1 |
1,657 |
by danpf Fri, 2020-02-21 18:37 |
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Problem with mpirun/mpiexec by ahansel » Fri, 2020-07-10 08:37 |
1 |
3,767 |
by rmoretti Fri, 2020-07-10 09:59 |
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Comparative Modeling Tutorial by code_Monkey » Thu, 2021-03-04 12:35 |
1 |
1,068 |
by rmoretti Fri, 2021-03-05 09:35 |
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Pepspec error by almeida85 » Mon, 2022-05-02 04:07 |
1 |
1,282 |
by almeida85 Mon, 2022-05-02 05:05 |
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analyze_flex_ddG.py by valebut » Tue, 2023-11-28 04:30 |
1 |
365 |
by Aleksandra Panfilova Tue, 2023-11-28 05:34 |
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Place ligand in a pocket by sn » Fri, 2017-09-15 12:53 |
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2,053 |
by rmoretti Fri, 2017-09-15 13:11 |
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How to analyse multiple silent files from "Abinitiorelax" output to find best models? by Danielsebas » Tue, 2019-09-10 10:01 |
1 |
1,468 |
by smlewis Mon, 2019-09-16 12:22 |
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creating a model using a base pdb and extending a chain by rlwoltz » Fri, 2013-07-12 15:35 |
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2,730 |
by nawsad Mon, 2014-04-21 06:48 |
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rosetta 3.3 - antibody by ron amon » Mon, 2014-07-21 00:44 |
1 |
2,515 |
by rmoretti Mon, 2014-07-21 10:51 |
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References where Rosetta is used to compute ddG of binding after mutation? by cossio » Tue, 2015-03-17 05:13 |
1 |
2,965 |
by rmoretti Wed, 2015-03-25 11:33 |
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how to pick fragments for a transmembrane protein by tevang » Mon, 2012-05-28 06:52 |
1 |
2,296 |
by tevang Mon, 2014-04-21 06:47 |
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