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Rosetta 3 - Applications
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Relax with RDC data gives segmentation fault by sn » Mon, 2018-07-23 11:39 |
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1,010 |
by rmoretti Fri, 2018-08-03 07:54 |
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I need some help for using pHDock applications(histidine protonation / pH-dependent binding) by leygkn » Tue, 2020-09-22 18:40 |
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531 |
by leygkn Tue, 2020-09-22 22:46 |
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Incorporating iron-sulfur cluster into ROSETTA applications by Derek Smith » Thu, 2014-08-14 23:12 |
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1,996 |
by rmoretti Fri, 2014-08-15 08:06 |
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Fixing part of a ligand in dock-design by hssnzdh2 » Mon, 2015-11-23 17:14 |
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1,636 |
by rmoretti Tue, 2015-11-24 16:16 |
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Packstat application output by Vedasheersh » Mon, 2017-07-03 02:45 |
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1,355 |
by rmoretti Mon, 2017-07-03 09:17 |
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antibody - sequence position requested was 0 by jremmel » Mon, 2021-09-27 12:26 |
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189 |
by nannemdp Mon, 2021-09-27 14:22 |
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No interface for protein - Interface Analyzer by aloshbau » Tue, 2013-05-21 21:00 |
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2,285 |
by jarod Mon, 2014-04-21 06:47 |
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ambiguous constraints by shrutikhare » Mon, 2014-05-12 04:42 |
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2,662 |
by rmoretti Mon, 2014-05-12 08:25 |
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How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"? by lanselibai » Sat, 2015-01-17 11:19 |
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2,455 |
by lanselibai Wed, 2015-01-21 02:40 |
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Coding denovo prediction from density maps in PyRosetta by ahmadkhalifa » Tue, 2018-04-10 11:43 |
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986 |
by rmoretti Tue, 2018-04-10 15:29 |
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Filtering while clustering by David Hoover » Wed, 2011-03-30 07:03 |
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2,074 |
by smlewis Mon, 2014-04-21 06:47 |
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ProteinInterfaceDesign algorithm questions by tsztain » Mon, 2019-02-18 14:10 |
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1,063 |
by rmoretti Sun, 2019-08-25 19:15 |
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denovo modelling on a virus-coat protein dimer by aseem121 » Wed, 2019-10-16 06:55 |
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803 |
by danpf Wed, 2019-10-16 13:03 |
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Snugdock_error by luicui » Thu, 2017-02-09 21:06 |
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1,172 |
by smlewis Thu, 2017-02-09 21:50 |
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Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol? by cossio » Thu, 2015-02-05 07:10 |
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1,728 |
by rmoretti Mon, 2015-02-09 12:33 |
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Enzyme Design FlexBB Protocol Bug: DNA/RNA handling by kettner » Fri, 2019-06-14 14:16 |
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1,233 |
by rmoretti Mon, 2019-06-24 13:46 |
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residue_energy_breakdown of a protein-ligand complex. by sam_dc » Tue, 2021-05-18 04:45 |
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351 |
by rmoretti Tue, 2021-05-18 07:21 |
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Interface Analyzer Segmentation Fault by h_trasatti » Tue, 2017-02-21 12:48 |
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1,628 |
by smlewis Tue, 2017-02-21 14:10 |
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Warning: Fold tree is not set properly for density scoring by ahansel » Mon, 2020-07-13 10:50 |
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623 |
by danpf Tue, 2020-07-14 10:27 |
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Using different number of 9-mers (UPDATED) by JadAbbass » Mon, 2017-08-28 07:20 |
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1,284 |
by rmoretti Mon, 2017-09-04 10:33 |
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docking with capping groups by xavierfradera » Sun, 2018-11-04 16:17 |
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899 |
by maral.adeli-kou... Wed, 2020-01-22 12:41 |
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Undesirable behaviour of PoseFromSFRBuilder regarding Hydrogen atoms by Corvin » Wed, 2020-12-02 04:00 |
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475 |
by rmoretti Wed, 2020-12-02 07:27 |
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trouble in floppytail modelling by ytao » Thu, 2013-06-27 13:15 |
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1,918 |
by ytao Mon, 2014-04-21 06:48 |
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Holes output interpretation by lah435 » Mon, 2012-06-04 15:02 |
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1,918 |
by smlewis Mon, 2014-04-21 06:47 |
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Question on restraining receptor symmetry when docking ligand by subha » Fri, 2018-07-06 21:59 |
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941 |
by rmoretti Fri, 2018-08-03 08:16 |
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RosettaMatch by xingqing326 » Mon, 2019-07-22 13:14 |
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1,077 |
by rmoretti Mon, 2019-08-26 12:57 |
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How to use base_pair_constraint for RNA as a constraint term？ by yels » Sat, 2021-04-03 01:19 |
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387 |
by everyday847 Sun, 2021-04-04 12:48 |
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Design with limited number of aminoacids at given position by sdh_h » Sun, 2016-12-04 03:44 |
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1,326 |
by smlewis Thu, 2016-12-08 15:50 |
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dssp by MA » Thu, 2017-10-05 09:34 |
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1,179 |
by rmoretti Tue, 2017-10-10 09:54 |
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[LoopModelerMover] ERROR: Can't build a fold tree from a loop with an unspecified cut point. by dgm3 » Sun, 2021-12-26 18:32 |
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94 |
by dgm3 Fri, 2021-12-31 17:42 |
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score and relax by Prasanth Kumar » Thu, 2013-05-02 05:09 |
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2,710 |
by jadolfbr Mon, 2014-04-21 06:47 |
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relax VS. backrub by jiongzhang » Mon, 2012-07-02 14:52 |
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1,958 |
by smlewis Mon, 2014-04-21 06:47 |
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InterfaceAnalyzer -resfile by gw » Wed, 2011-11-02 16:01 |
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2,286 |
by smlewis Mon, 2014-04-21 06:47 |
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duplex RNA by amir_tagh » Thu, 2021-08-05 06:34 |
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288 |
by everyday847 Mon, 2021-08-16 10:43 |
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modeling 4 linkers between 2 domains by pdbb » Thu, 2013-05-16 08:23 |
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1,907 |
by smlewis Mon, 2014-04-21 06:47 |
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cluster error by sudhar » Fri, 2011-06-17 05:58 |
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2,297 |
by rmoretti Mon, 2014-04-21 06:47 |
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Surface accessible residue as a constraint. by arthuc01 » Fri, 2012-03-09 23:27 |
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1,743 |
by smlewis Mon, 2014-04-21 06:47 |
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splitfile.py by saladi » Fri, 2018-03-30 10:31 |
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1,131 |
by rmoretti Tue, 2018-04-10 15:34 |
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How can I model ligands in comparative modeling by Morrian_Lynn » Thu, 2020-02-20 09:57 |
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637 |
by danpf Fri, 2020-02-21 17:05 |
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Docking Analysis and Metrics in RosettaLigand. by sam_dc » Tue, 2021-04-20 03:54 |
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454 |
by rmoretti Tue, 2021-04-20 13:27 |
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problem with modelling of protein (140 and 150 residues respectively) by krlitros87 » Wed, 2014-10-22 09:39 |
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1,590 |
by rmoretti Thu, 2014-10-23 13:55 |
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Homology modelling applies alignment wrong by bernhardcl » Thu, 2015-08-06 09:39 |
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1,517 |
by bernhardcl Tue, 2015-08-11 09:11 |
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comparative modeling of a homodimer by banshee » Mon, 2017-01-09 18:34 |
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1,695 |
by rmoretti Wed, 2017-01-11 13:00 |
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[Solved] Resetting a pose with RigidBodyTransMover by bjharris » Wed, 2021-01-13 14:01 |
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449 |
by bjharris Fri, 2021-01-22 17:34 |
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RoseTTaFold by ozsolomon » Thu, 2021-10-07 05:27 |
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407 |
by ozsolomon Thu, 2021-10-07 14:25 |
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flexpepdock flag "-packing:unboundrot" by gw » Mon, 2011-07-11 12:23 |
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3,144 |
by Ora Schueler-Furman Mon, 2014-04-21 06:47 |
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creating compound task mover by aaj » Wed, 2016-02-24 04:48 |
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1,825 |
by aaj Wed, 2016-02-24 07:37 |
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Strong bias in sampling observed in RosettaDock by chenna » Thu, 2020-08-27 22:23 |
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711 |
by chenna Tue, 2021-10-12 20:51 |
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GrowLigand by allan.ferrari » Sat, 2019-10-19 05:32 |
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1,214 |
by allan.ferrari Tue, 2019-11-05 16:52 |
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membrane ab initio modeling application with constraints by ytao » Thu, 2012-11-08 11:56 |
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3,529 |
by ytao Mon, 2014-04-21 06:47 |
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Syntax for python-based (.py) command line on cluster by lanselibai » Fri, 2014-11-14 09:32 |
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4,336 |
by lanselibai Thu, 2014-11-20 02:15 |
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Error from clean_pdb.py by code_Monkey » Mon, 2021-03-01 17:00 |
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513 |
by code_Monkey Thu, 2021-03-04 12:14 |
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RMS determination using Rosetta 3.3 by adraney » Thu, 2011-12-08 12:44 |
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2,556 |
by mark.wilson Mon, 2014-04-21 06:47 |
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refining crystal structure using phenix without CIF file by banshee » Fri, 2016-09-09 01:14 |
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2,250 |
by banshee Mon, 2016-09-12 23:41 |
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Regarding the efficiency of the new low resolution ligand-docking movement “Transform”. by Martin Floor » Mon, 2017-05-15 09:19 |
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1,790 |
by Martin Floor Mon, 2017-05-15 11:13 |
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The question about ligand score function by asbelx » Sun, 2018-06-17 02:07 |
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1,996 |
by asbelx Mon, 2018-06-18 22:34 |
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Number of max allowed mutations from WT sequence by mouung » Fri, 2020-09-04 02:33 |
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838 |
by amorin Fri, 2021-02-12 08:53 |
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kinematic loop modeling multiple input: possible? by a_s_a » Thu, 2011-05-12 09:33 |
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2,585 |
by a_s_a Mon, 2014-04-21 06:47 |
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KeyError: 'subject-id' in antibody modelling by bogac » Mon, 2017-03-06 02:00 |
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2,106 |
by bogac Tue, 2017-03-07 02:11 |
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Membrane homology modeling loop building gives very strange outputs by chelsell » Tue, 2014-09-30 14:46 |
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2,411 |
by chelsell Wed, 2014-10-08 12:25 |
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The usage of antibody_H3.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 22:50 |
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943 |
by Sunyp_IM Thu, 2020-06-04 08:20 |
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getting a3m files by alonwenger » Wed, 2021-12-15 02:38 |
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151 |
by alonwenger Sat, 2021-12-18 12:32 |
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Fold and Dock - chains not in contact by arthuc01 » Wed, 2012-06-13 01:45 |
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2,384 |
by smlewis Mon, 2014-04-21 06:47 |
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Remodel: neighbor cutoff by felipet » Wed, 2014-07-16 08:11 |
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1,947 |
by felipet Thu, 2014-07-17 10:13 |
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Total score problems with high-res ddg_monomer by jklesmith » Tue, 2015-03-10 15:54 |
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2,607 |
by jennifer Fri, 2015-03-27 05:56 |
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where to look for positive sign for solution in mr-rosetta3.4? by lchen » Tue, 2012-07-10 09:38 |
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2,416 |
by lchen Mon, 2014-04-21 06:47 |
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FlexPepDock Concatenation by cam11 » Mon, 2014-08-11 07:39 |
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2,056 |
by cam11 Wed, 2014-08-13 10:06 |
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score_jd2.mpi.linuxgccrelease failed by fred » Wed, 2014-03-26 13:54 |
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4,229 |
by fred Tue, 2014-04-01 08:24 |
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Homology Modeling-no PDB output by jlawrie » Wed, 2020-08-12 06:30 |
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840 |
by jlawrie Wed, 2020-08-12 08:56 |
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GeneralizedKIC loop closure error by chenna » Sat, 2021-04-10 00:21 |
2 |
471 |
by chenna Mon, 2021-04-12 22:08 |
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How to eliminate "NUL"s when scoring PDBs? by lanselibai » Tue, 2014-10-14 10:04 |
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2,218 |
by lanselibai Fri, 2014-10-17 03:36 |
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How to scan double mutations in RosettaScripts? by msardejani » Mon, 2016-12-12 16:52 |
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1,703 |
by msardejani Mon, 2016-12-12 17:48 |
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symmetric fixbb design with design_hpatch by sdh_h » Sat, 2013-02-02 01:48 |
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2,195 |
by ronj Mon, 2014-04-21 06:47 |
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Trouble running MPI docking protocol, please help! by Rob_Barringer » Tue, 2020-08-18 06:40 |
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1,115 |
by Rob_Barringer Fri, 2020-09-25 05:45 |
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Generalized KIC loop closure affects downstream residues without perturbations by chenna » Mon, 2021-04-26 02:16 |
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434 |
by chenna Wed, 2021-04-28 07:18 |
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Score - Strange message by Ashafix » Wed, 2013-11-20 15:23 |
2 |
2,761 |
by Ashafix Mon, 2014-04-21 06:48 |
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Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu by lanselibai » Mon, 2014-11-10 08:12 |
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2,179 |
by lanselibai Tue, 2014-11-11 04:42 |
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Fnat and Irms are nan in score.sc from docking_protocol? by cossio » Sun, 2015-09-13 07:34 |
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2,605 |
by rmoretti Thu, 2015-09-17 12:47 |
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Collecting all decoys from batch files by aep » Sun, 2016-08-07 12:23 |
2 |
1,766 |
by aep Sat, 2016-08-13 13:03 |
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Ligand params file proton_chi parameters by staciekim » Thu, 2017-08-17 14:50 |
2 |
1,985 |
by staciekim Thu, 2017-08-17 17:06 |
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RosettaAntibody core.pose.util error by rishibedi » Fri, 2018-10-05 01:31 |
2 |
1,634 |
by esozdemir Thu, 2019-06-13 12:19 |
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How to add additional rounds of design and optimization in Rosetta scripts? by Nicole Deng » Tue, 2020-11-03 19:05 |
2 |
658 |
by Nicole Deng Thu, 2020-11-05 03:04 |
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Multiple Chain Comparative Modeling - End result is not even close to template structure by eskici » Wed, 2012-08-29 08:09 |
2 |
3,083 |
by eskici Mon, 2014-04-21 06:47 |
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ProteinLigandInterfaceUpweighter for protein-protein interactions? by ahonegger » Mon, 2014-06-02 06:53 |
2 |
2,423 |
by ahonegger Fri, 2014-06-06 09:31 |
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cartesian_ddg error: "Assertion `files.size() == 1` failed." by cossio » Fri, 2018-05-11 09:59 |
2 |
1,937 |
by cossio Fri, 2018-05-18 09:51 |
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Question about fastsaxs and saxs_score by orionshih » Thu, 2019-06-13 02:30 |
2 |
1,064 |
by orionshih Wed, 2019-06-26 03:54 |
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make_fragments.pl error by almeida85 » Mon, 2020-08-31 04:39 |
2 |
906 |
by almeida85 Tue, 2020-09-01 01:29 |
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ERROR: Specified chain does not exist. by ajaniharesh » Fri, 2019-04-05 11:14 |
2 |
1,504 |
by ajaniharesh Tue, 2019-04-09 06:53 |
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How to use Rosetta to DISCARD a protein-protein docking interface? by cossio » Tue, 2015-05-26 06:24 |
2 |
2,439 |
by rmoretti Sat, 2015-07-11 13:38 |
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RMSD calculation by hamedkhakzad » Tue, 2016-09-13 04:56 |
2 |
2,904 |
by rmoretti Wed, 2016-09-14 02:05 |
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"Make_fragments.pl" can't connect to dependencies links by Corvin » Wed, 2019-09-04 23:54 |
2 |
1,257 |
by Corvin Thu, 2019-10-10 01:12 |
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RosettaRemodel by gw » Wed, 2011-09-14 13:24 |
2 |
2,737 |
by smlewis Mon, 2014-04-21 06:47 |
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cross correlation calculation by jingwei xu » Sat, 2016-04-16 19:11 |
2 |
1,943 |
by jingwei xu Wed, 2016-05-04 23:26 |
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Segmentation Fault in Fragment picking by ashu4487 » Fri, 2018-07-06 20:47 |
2 |
2,161 |
by ashu4487 Mon, 2018-07-16 19:24 |
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De novo structure building with medium resolution map by BuddySphinx » Tue, 2019-07-02 09:07 |
2 |
1,127 |
by BuddySphinx Tue, 2019-07-02 12:03 |
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Remodel with residue constraints by sn » Fri, 2017-03-10 01:40 |
2 |
1,629 |
by rmoretti Mon, 2017-03-13 08:01 |
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problems with generating the params file by dyu » Thu, 2017-09-28 13:34 |
2 |
1,507 |
by dyu Thu, 2017-09-28 18:54 |
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Error with Formatdb of legacy blast when running "install_dependencies.pl"? by Danielsebas » Mon, 2019-09-16 09:30 |
2 |
908 |
by Danielsebas Tue, 2019-09-17 01:03 |
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setup_RosettaCM.py by browns02 » Mon, 2021-06-28 07:13 |
2 |
330 |
by browns02 Tue, 2021-06-29 11:41 |
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Membrane protein protocol on PyRosetta by jlapin » Sat, 2018-07-28 14:41 |
2 |
1,303 |
by jlapin Wed, 2018-08-01 07:15 |
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