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Rosetta 3 - Applications
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Small molecule dimer/trimer/etc docking by lukasz » Tue, 2022-10-04 06:49 |
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902 |
by rmoretti Tue, 2022-10-04 07:57 |
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Representing Cross-linked nitrogens by jjlee2 » Sat, 2011-11-26 18:42 |
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2,138 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta_scripts error, Got some signal... It is:6 by jhm13c » Fri, 2017-04-14 14:05 |
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1,706 |
by rmoretti Sat, 2017-04-15 13:30 |
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Relax with multiple small molecules by jharamesh » Sun, 2019-05-26 19:34 |
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1,262 |
by rmoretti Mon, 2019-06-24 15:19 |
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Ddg filter threshold value? by chrisHKL » Fri, 2020-02-28 15:01 |
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872 |
by rmoretti Wed, 2020-03-04 09:56 |
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shape complementarity by holdenj » Fri, 2022-07-15 13:24 |
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232 |
by rmoretti Fri, 2022-07-15 13:50 |
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Script for loop modeling: how to define loop sequence by batch2k » Thu, 2014-10-30 12:58 |
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1,859 |
by jadolfbr Fri, 2014-10-31 08:45 |
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"install_dependencies.pl" script: an optimization of HDD space during nr-pfilt data extracting and formatting stage by Corvin » Thu, 2019-10-10 02:20 |
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1,082 |
by danpf Thu, 2019-10-10 09:55 |
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How to select docked models by Sunyp_IM » Mon, 2020-06-22 00:50 |
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781 |
by ssrb Mon, 2020-06-22 13:12 |
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Rosetta DNA - Protein-DNA scoring function and binding energy by tanoramb » Tue, 2012-05-08 14:00 |
1 |
4,151 |
by smlewis Mon, 2014-04-21 06:47 |
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antibody protocol fails by hamedkhakzad » Mon, 2019-08-19 07:43 |
1 |
1,035 |
by smlewis Tue, 2019-10-22 09:45 |
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interface_delta ligand_docking by Prasanth Kumar » Tue, 2013-06-18 08:37 |
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2,285 |
by rmoretti Mon, 2014-04-21 06:48 |
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Generating non-redundat dataset for loop models by dario.corrada » Wed, 2016-03-09 03:00 |
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1,548 |
by smlewis Wed, 2016-03-09 04:11 |
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Model two domain protein by sn » Sat, 2017-05-06 13:21 |
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1,555 |
by rmoretti Mon, 2017-05-15 08:54 |
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rosetta's keyword list by fred » Tue, 2014-01-21 06:03 |
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2,400 |
by rmoretti Mon, 2014-04-21 06:48 |
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Two questions on the RosettaScripts flexbb-interfacedesign.xml by johnnytam100 » Fri, 2019-03-15 04:54 |
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1,282 |
by rmoretti Fri, 2019-03-29 09:58 |
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how to pick fragments for a transmembrane protein by tevang » Mon, 2012-05-28 06:52 |
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1,944 |
by tevang Mon, 2014-04-21 06:47 |
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Error with FlexPepDock by aloshbau » Sat, 2013-08-10 11:51 |
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2,292 |
by rmoretti Mon, 2014-04-21 06:48 |
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Snugdock+ensembledock usage by Anouk » Mon, 2014-09-22 08:09 |
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2,601 |
by jadolfbr Mon, 2014-10-20 13:42 |
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Should I trust the score output from relax used with a protein complex? by cossio » Thu, 2015-05-07 06:08 |
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1,794 |
by rmoretti Mon, 2015-05-25 12:37 |
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C-termini remodelling of dimeric structure removes second chain by LeonhardJS » Wed, 2021-10-13 06:23 |
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543 |
by LeonhardJS Fri, 2021-11-12 01:20 |
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homology membrane modeling demo in rosetta 3.5 by rlwoltz » Mon, 2013-09-09 10:26 |
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2,566 |
by smlewis Mon, 2014-04-21 06:48 |
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Syntax to extract PDB files from a silent file by lanselibai » Fri, 2014-09-26 13:48 |
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3,465 |
by lanselibai Fri, 2014-09-26 14:58 |
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Using residue patches in AbinitioRelax by kent » Fri, 2018-11-02 11:19 |
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1,445 |
by rmoretti Wed, 2018-11-21 15:40 |
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Difference between relax and mimimize_with_cst by basvandenberg » Thu, 2012-02-09 00:16 |
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2,448 |
by rmoretti Mon, 2014-04-21 06:47 |
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membrane modeling error by benniu2004 » Mon, 2013-07-01 17:59 |
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2,177 |
by smlewis Mon, 2014-04-21 06:48 |
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Failed glycine check when running RosettaRemodel to build disulfide by cheyuk » Fri, 2014-06-27 02:31 |
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1,815 |
by everyday847 Sun, 2014-09-28 21:16 |
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Design a peptide linked to small molecule ligand by shaunmk » Mon, 2015-03-02 09:05 |
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2,150 |
by rmoretti Wed, 2015-03-25 12:39 |
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sequence design to enhance Fc / Fc-g Receptor binding by jarod » Tue, 2017-05-23 09:00 |
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1,386 |
by jadolfbr Thu, 2017-06-01 10:00 |
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contents of span file by tevang » Mon, 2013-04-15 05:01 |
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2,241 |
by smlewis Mon, 2014-04-21 06:47 |
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heads up for constraints using GAUSSIANFUNC by attesor » Thu, 2015-10-22 07:30 |
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1,595 |
by smlewis Thu, 2015-10-22 08:04 |
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Docking prepack vs. relax by David Weis » Tue, 2017-02-21 05:37 |
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1,618 |
by smlewis Tue, 2017-02-21 07:58 |
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PEPSPEC by Neeraj » Wed, 2018-01-03 02:24 |
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1,353 |
by Andre Serobian Wed, 2020-07-08 04:44 |
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Docking structures with ligands in cryo-EM maps by galushin » Wed, 2012-07-11 12:40 |
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4,164 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Full Protocol by shekhar » Fri, 2013-10-04 01:07 |
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2,702 |
by rmoretti Mon, 2014-04-21 06:48 |
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Docking with loop rebuilding by kxiao » Sun, 2015-06-28 19:37 |
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1,834 |
by rmoretti Fri, 2015-07-03 14:41 |
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Ddg_monomer: implementing disulfides by kabol » Wed, 2016-11-30 02:39 |
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1,904 |
by rmoretti Wed, 2016-11-30 07:46 |
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docking parse error by dave » Tue, 2018-12-04 08:41 |
1 |
1,502 |
by rmoretti Tue, 2018-12-04 08:55 |
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ERROR: APBS failed to generate the result file. by bhavranek » Sat, 2021-12-18 11:01 |
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488 |
by bhavranek Sun, 2021-12-26 21:05 |
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FASTA for Octopus by Smbat » Wed, 2020-09-16 05:40 |
1 |
1,015 |
by rmoretti Wed, 2020-09-16 22:11 |
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Unsatisfied interface H-bond in Ligand docking by Prasanth Kumar » Thu, 2013-07-18 12:04 |
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3,734 |
by rmoretti Mon, 2014-04-21 06:48 |
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relax job failed by albumns » Sat, 2014-07-26 00:21 |
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1,791 |
by rmoretti Sun, 2014-07-27 10:48 |
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rosetta scores for mutated structures by harshkhare » Wed, 2011-11-23 09:30 |
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2,433 |
by rmoretti Mon, 2014-04-21 06:47 |
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Options for Enzdes RosettaScripts by joeg » Wed, 2014-03-12 09:28 |
1 |
2,499 |
by rmoretti Thu, 2014-03-13 08:04 |
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Segmentation fault when running Abinito Relax by Hongtham » Mon, 2014-12-15 07:16 |
1 |
2,754 |
by rmoretti Fri, 2015-01-02 11:45 |
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Protein/Protein Ddg demo: How to write predicted mutant structures? by cossio » Wed, 2015-11-04 20:14 |
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1,600 |
by rmoretti Tue, 2015-11-10 11:10 |
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running structure prediction with robetta server like automation by dhirajks » Mon, 2018-01-29 21:32 |
1 |
1,704 |
by rmoretti Tue, 2018-01-30 07:51 |
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Highly negative total score by Ruchi_P_Jain » Wed, 2019-04-24 19:55 |
1 |
1,265 |
by nannemdp Thu, 2019-04-25 07:58 |
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mpirun docking_protocol by NanB » Mon, 2020-08-03 11:38 |
1 |
1,995 |
by ssrb Fri, 2020-08-14 09:18 |
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CartesianRefiner compilation problem by DmitriiN » Tue, 2015-12-15 08:52 |
1 |
1,685 |
by rmoretti Tue, 2015-12-15 09:48 |
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Modeling-Using RosettaCM by jlawrie » Wed, 2020-08-12 08:46 |
1 |
746 |
by jlawrie Wed, 2020-08-12 08:47 |
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restrain residues in docking by albumns » Sat, 2013-11-02 08:52 |
1 |
2,305 |
by jadolfbr Mon, 2014-04-21 06:48 |
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autoNOE peak lists by aep » Thu, 2015-08-06 06:15 |
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1,830 |
by sgourn Tue, 2015-08-18 18:25 |
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UnfoldedStateEnergyCalculator MPI Error by colin.walsh.brown » Mon, 2017-11-13 09:43 |
1 |
1,511 |
by smlewis Mon, 2017-11-13 10:43 |
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Energy function and iteration script files by michelleqyh » Fri, 2019-09-27 09:06 |
1 |
922 |
by smlewis Fri, 2019-09-27 11:54 |
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protein-protein docking by cbala » Mon, 2011-04-18 09:15 |
1 |
2,267 |
by smlewis Mon, 2014-04-21 06:47 |
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How does the label in pdb files looks like when using ResiduePDBInfoHasLabel? by johnnytam100 » Fri, 2019-08-16 00:25 |
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1,279 |
by JackMaguire Fri, 2019-08-16 07:41 |
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Input structure by Soler » Mon, 2020-09-28 13:18 |
1 |
749 |
by ssrb Tue, 2020-09-29 12:37 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
1 |
2,647 |
by jharamesh Mon, 2014-11-03 12:50 |
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Fast relax not working by eyong123 » Fri, 2017-04-21 06:06 |
1 |
1,585 |
by rmoretti Fri, 2017-04-21 07:41 |
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AddHelixSequenceConstraints Mover2 by Negarsardar » Sat, 2019-06-01 01:54 |
1 |
1,032 |
by vmulligan Thu, 2019-06-13 15:01 |
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protein-protein docking with flexible backbone by tim » Fri, 2013-12-20 05:52 |
1 |
3,943 |
by rmoretti Mon, 2014-04-21 06:48 |
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"Segmentation fault" for "minirosetta.linuxgccrelease" by lanselibai » Tue, 2014-11-04 03:17 |
1 |
2,417 |
by rmoretti Tue, 2014-11-04 08:53 |
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ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease by cossio » Thu, 2015-09-03 08:46 |
1 |
2,636 |
by rmoretti Fri, 2015-09-04 10:25 |
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output file in ddg calcualtion by malkeet.singh » Sun, 2017-12-03 07:59 |
1 |
1,236 |
by malkeet.singh Wed, 2017-12-06 02:02 |
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Unexpected Error with RosettaCM - by terry » Fri, 2019-02-22 14:26 |
1 |
2,734 |
by rmoretti Fri, 2019-03-29 12:25 |
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modeling missing linker in a protein by Isaure de Beauchene » Fri, 2012-05-11 10:13 |
1 |
3,063 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem in using "loopmodel" application to add missing residues by sushreet » Wed, 2014-08-27 12:43 |
1 |
1,714 |
by rmoretti Thu, 2014-08-28 09:42 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Wed, 2016-07-06 10:35 |
1 |
1,719 |
by rmoretti Tue, 2016-07-12 08:56 |
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Question on Designing with NCAAs by salvatta » Mon, 2018-09-10 10:09 |
1 |
1,277 |
by rmoretti Thu, 2018-09-20 09:23 |
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Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively? by johnnytam100 » Fri, 2019-08-23 21:10 |
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970 |
by rmoretti Mon, 2019-08-26 12:03 |
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trRosetta - Nan occuring in Hbond calculation by y_atsmonraz » Mon, 2021-10-04 09:16 |
1 |
480 |
by shivarawat115 Mon, 2022-04-11 16:10 |
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Using Rmsd RosettaScripts filter with alignment files by bjharris » Sun, 2020-11-08 15:51 |
1 |
734 |
by rmoretti Sun, 2020-11-08 18:56 |
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connecting rna strands together by y_atsmonraz » Tue, 2021-11-09 05:42 |
1 |
474 |
by y_atsmonraz Thu, 2021-11-11 04:51 |
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loopmodel issue by chiendarret » Fri, 2012-01-27 00:51 |
1 |
2,731 |
by smlewis Mon, 2014-04-21 06:47 |
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BuildPeptide - Using Phosphorylated and Sulfated Tyrosine by jlawrie » Thu, 2020-09-03 14:29 |
1 |
948 |
by cryosky Mon, 2021-03-01 21:37 |
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Symmetry-aware Backrub? by gamacy » Fri, 2014-11-14 02:18 |
1 |
1,823 |
by rmoretti Tue, 2014-11-18 09:10 |
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Protein Design by ac.research » Wed, 2017-02-15 19:25 |
1 |
2,376 |
by cdbahl Sat, 2017-02-18 13:02 |
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Abinitio the Broker protocol by ac.research » Sun, 2019-03-24 03:56 |
1 |
1,156 |
by rmoretti Fri, 2019-04-05 00:18 |
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Issue with Rosetta LinkResidues Script by adityapadhi » Wed, 2019-11-20 22:00 |
1 |
1,013 |
by JackMaguire Fri, 2019-11-22 13:45 |
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loop modeling scoring by Nicky_Learning_... » Wed, 2015-05-13 20:00 |
1 |
2,348 |
by rmoretti Mon, 2015-05-25 11:30 |
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Resfile as a input for InterfaceAnalyzer by palak8669 » Sun, 2015-06-07 21:46 |
1 |
1,690 |
by smlewis Mon, 2015-06-08 06:35 |
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Problem in redesign binding site by armart999 » Fri, 2016-10-14 01:55 |
1 |
1,936 |
by rmoretti Fri, 2016-10-14 08:42 |
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Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2 by AJVincelli » Sat, 2018-07-14 13:14 |
1 |
1,495 |
by AJVincelli Sun, 2018-11-25 11:29 |
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Checkpoint with rosetta3.4 by AmelieH » Mon, 2014-12-01 15:51 |
1 |
2,162 |
by rmoretti Wed, 2014-12-03 19:07 |
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Protein Protein Docking with Constraints by ajaniharesh » Wed, 2019-04-10 07:26 |
1 |
1,218 |
by rmoretti Thu, 2019-05-09 15:40 |
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Different scoring applications (score vs score_aln vs score_jd2, etc.)? by cossio » Fri, 2014-12-26 07:19 |
2 |
3,124 |
by cossio Tue, 2015-01-20 06:40 |
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RosettaScripts - FastRelax loops by jtmacd » Wed, 2015-11-18 09:32 |
2 |
3,542 |
by jtmacd Fri, 2015-12-04 03:11 |
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Relax structure with metal cofactors by h_trasatti » Tue, 2017-03-14 14:04 |
2 |
2,440 |
by rmoretti Tue, 2017-03-28 08:51 |
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Choosing weight file for interface design? by johnnytam100 » Tue, 2019-05-07 00:47 |
2 |
1,607 |
by johnnytam100 Tue, 2019-05-21 22:33 |
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how to know the precedure of solving a actural bio problem? like interface design? by qq7678500549 » Thu, 2020-08-06 18:45 |
2 |
1,047 |
by qq7678500549 Sun, 2020-08-09 18:59 |
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MaxSub and MaxSub2.0 by JadAbbass » Tue, 2013-10-15 13:36 |
2 |
3,151 |
by JadAbbass Mon, 2014-04-21 06:48 |
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Including ab-initio predicted model in fragment library generation by ashu4487 » Thu, 2016-12-08 17:49 |
2 |
1,936 |
by ashu4487 Sun, 2016-12-11 19:03 |
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rosetta_cm segfault by browns02 » Fri, 2021-07-09 13:35 |
2 |
788 |
by rmoretti Fri, 2021-07-09 15:05 |
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limit_cluster_size default value by sacch » Thu, 2011-11-24 17:57 |
2 |
2,463 |
by sacch Mon, 2014-04-21 06:47 |
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ddG filter gives deltaG calculation number? by jarod » Tue, 2013-05-28 23:43 |
2 |
3,432 |
by jarod Mon, 2014-04-21 06:47 |
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Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved] by loreseeker » Wed, 2011-09-14 08:13 |
2 |
3,180 |
by loreseeker Mon, 2014-04-21 06:47 |
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Abinitio protocol and X-Ray diffraction data by allan.ferrari » Wed, 2015-08-12 12:49 |
2 |
2,451 |
by allan.ferrari Fri, 2015-08-28 12:07 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Fri, 2020-06-19 08:58 |
2 |
1,181 |
by Kotimedidhi Mon, 2020-06-22 16:19 |
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flexpep docking, select the decoy to do the further docking, questions by michael_luntan » Fri, 2011-04-22 04:43 |
2 |
3,067 |
by michael_luntan Mon, 2014-04-21 06:47 |
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