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Rosetta 3 - Applications
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Error Interface analyser by jrcf » Thu, 2017-06-22 12:55 |
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1,353 |
by smlewis Thu, 2017-06-22 13:31 |
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Relaxing protein-RNA complexes by rkirchdo » Fri, 2018-08-03 08:50 |
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1,119 |
by rmoretti Fri, 2018-08-24 11:28 |
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ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result??? by Ryhon Wang » Mon, 2016-01-04 22:36 |
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2,477 |
by rmoretti Tue, 2016-01-05 08:35 |
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Mutating phosphorylated residues to "canonical" residues and vice versa by ValentinaSora » Mon, 2019-05-20 05:58 |
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1,488 |
by rmoretti Wed, 2019-07-10 09:22 |
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remodel ERROR: unrecognized mm_atom_type_name RGU by daniloboskovic » Sat, 2020-02-22 11:55 |
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843 |
by daniloboskovic Tue, 2020-02-25 08:28 |
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FlexPepDock in RosettaScripts keeps running by gw » Tue, 2012-08-21 12:31 |
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2,200 |
by smlewis Mon, 2014-04-21 06:47 |
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Relax with a ligand is messing up the coordinates of the ligand by brspurri » Sat, 2015-01-24 12:39 |
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2,333 |
by rmoretti Mon, 2015-01-26 12:15 |
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Difference between movemap and -pivot_residues by aloshbau » Wed, 2016-02-24 13:21 |
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1,693 |
by rmoretti Wed, 2016-02-24 14:39 |
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weights for pH_protocol by fmerino » Wed, 2017-04-26 07:14 |
1 |
1,544 |
by rmoretti Thu, 2017-04-27 07:10 |
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broker domain insertion by dhirajks » Sun, 2018-05-06 12:55 |
1 |
1,103 |
by rmoretti Fri, 2018-05-18 12:28 |
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The relax qustion of Rosetta VIP by asbelx » Mon, 2019-06-10 07:52 |
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922 |
by rmoretti Mon, 2019-06-24 14:42 |
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Help with enzyme design files by Wenithor » Thu, 2021-04-29 10:33 |
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491 |
by rmoretti Thu, 2021-04-29 10:44 |
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Flexible peptide docking with flexible receptor backbone by tevang » Fri, 2012-09-14 11:18 |
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2,333 |
by smlewis Mon, 2014-04-21 06:47 |
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Antibody Docking application by Maryam_tabasinezhad » Sat, 2015-09-05 09:58 |
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1,884 |
by jadolfbr Wed, 2015-09-09 12:35 |
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Modelling at defined pH - for pmutscan - pH:mode not working by cagfa1 » Tue, 2022-03-15 04:05 |
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184 |
by Rituparna_Saman... Wed, 2022-03-23 11:21 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Mon, 2016-07-25 13:35 |
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1,904 |
by gsuchunli Mon, 2016-07-25 13:56 |
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MPdocking I_sc by jrcf » Mon, 2017-07-31 16:10 |
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1,382 |
by rmoretti Thu, 2017-08-03 09:29 |
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Membrane Abinitio modeling error by jkyan007 » Thu, 2020-10-29 03:30 |
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648 |
by noahC_noahDo Tue, 2020-11-17 10:35 |
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Fastrelax problem by Pernille » Tue, 2014-06-17 08:59 |
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1,674 |
by Pernille Fri, 2014-06-20 00:17 |
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'standard.wts' does not exist by almeida85 » Mon, 2020-09-14 02:26 |
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717 |
by rmoretti Mon, 2020-09-14 06:36 |
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Rosetta Holes by zsun12 » Wed, 2015-09-30 11:40 |
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3,179 |
by rmoretti Mon, 2015-10-12 15:20 |
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Rosetta scripts crash in CM workflow by jlburkhead » Tue, 2019-12-03 22:55 |
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1,091 |
by danpf Fri, 2020-02-21 18:37 |
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Problem with mpirun/mpiexec by ahansel » Fri, 2020-07-10 08:37 |
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2,283 |
by rmoretti Fri, 2020-07-10 09:59 |
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Comparative Modeling Tutorial by code_Monkey » Thu, 2021-03-04 12:35 |
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537 |
by rmoretti Fri, 2021-03-05 09:35 |
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Pepspec error by almeida85 » Mon, 2022-05-02 04:07 |
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94 |
by almeida85 Mon, 2022-05-02 05:05 |
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fold and dock protocol not working by ytao » Mon, 2012-11-26 15:33 |
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2,018 |
by smlewis Mon, 2014-04-21 06:47 |
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submit_NGK.py not creating output files by nkato2 » Wed, 2013-08-28 23:37 |
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2,119 |
by rmoretti Mon, 2014-04-21 06:48 |
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why is talaris2014 scoring fuction not used with ligand docking? by banshee » Fri, 2016-09-09 01:19 |
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1,631 |
by rmoretti Fri, 2016-09-09 07:47 |
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creating a model using a base pdb and extending a chain by rlwoltz » Fri, 2013-07-12 15:35 |
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2,249 |
by nawsad Mon, 2014-04-21 06:48 |
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rosetta 3.3 - antibody by ron amon » Mon, 2014-07-21 00:44 |
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1,973 |
by rmoretti Mon, 2014-07-21 10:51 |
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References where Rosetta is used to compute ddG of binding after mutation? by cossio » Tue, 2015-03-17 05:13 |
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2,306 |
by rmoretti Wed, 2015-03-25 11:33 |
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Loop modeling/closure for many structures by sn » Mon, 2017-03-06 11:25 |
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1,215 |
by rmoretti Mon, 2017-03-06 12:39 |
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input file for loop modeling by Negarsardar » Tue, 2019-04-16 10:21 |
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995 |
by rmoretti Tue, 2019-04-16 11:07 |
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Place ligand in a pocket by sn » Fri, 2017-09-15 12:53 |
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1,419 |
by rmoretti Fri, 2017-09-15 13:11 |
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How to analyse multiple silent files from "Abinitiorelax" output to find best models? by Danielsebas » Tue, 2019-09-10 10:01 |
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895 |
by smlewis Mon, 2019-09-16 12:22 |
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Filtering while clustering by David Hoover » Wed, 2011-03-30 07:03 |
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2,189 |
by smlewis Mon, 2014-04-21 06:47 |
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Relax with RDC data gives segmentation fault by sn » Mon, 2018-07-23 11:39 |
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1,123 |
by rmoretti Fri, 2018-08-03 07:54 |
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I need some help for using pHDock applications(histidine protonation / pH-dependent binding) by leygkn » Tue, 2020-09-22 18:40 |
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663 |
by leygkn Tue, 2020-09-22 22:46 |
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Incorporating iron-sulfur cluster into ROSETTA applications by Derek Smith » Thu, 2014-08-14 23:12 |
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2,128 |
by rmoretti Fri, 2014-08-15 08:06 |
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Fixing part of a ligand in dock-design by hssnzdh2 » Mon, 2015-11-23 17:14 |
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1,738 |
by rmoretti Tue, 2015-11-24 16:16 |
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ProteinInterfaceDesign algorithm questions by tsztain » Mon, 2019-02-18 14:10 |
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1,207 |
by rmoretti Sun, 2019-08-25 19:15 |
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denovo modelling on a virus-coat protein dimer by aseem121 » Wed, 2019-10-16 06:55 |
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932 |
by danpf Wed, 2019-10-16 13:03 |
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Packstat application output by Vedasheersh » Mon, 2017-07-03 02:45 |
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1,517 |
by rmoretti Mon, 2017-07-03 09:17 |
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antibody - sequence position requested was 0 by jremmel » Mon, 2021-09-27 12:26 |
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384 |
by nannemdp Mon, 2021-09-27 14:22 |
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ambiguous constraints by shrutikhare » Mon, 2014-05-12 04:42 |
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2,813 |
by rmoretti Mon, 2014-05-12 08:25 |
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How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"? by lanselibai » Sat, 2015-01-17 11:19 |
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2,586 |
by lanselibai Wed, 2015-01-21 02:40 |
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Coding denovo prediction from density maps in PyRosetta by ahmadkhalifa » Tue, 2018-04-10 11:43 |
1 |
1,113 |
by rmoretti Tue, 2018-04-10 15:29 |
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Add missing residues in loop modeling by exchhattu » Thu, 2013-06-20 17:38 |
1 |
3,108 |
by smlewis Mon, 2014-04-21 06:48 |
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Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol? by cossio » Thu, 2015-02-05 07:10 |
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1,841 |
by rmoretti Mon, 2015-02-09 12:33 |
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Enzyme Design FlexBB Protocol Bug: DNA/RNA handling by kettner » Fri, 2019-06-14 14:16 |
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1,363 |
by rmoretti Mon, 2019-06-24 13:46 |
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residue_energy_breakdown of a protein-ligand complex. by sam_dc » Tue, 2021-05-18 04:45 |
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533 |
by rmoretti Tue, 2021-05-18 07:21 |
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Snugdock_error by luicui » Thu, 2017-02-09 21:06 |
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1,277 |
by smlewis Thu, 2017-02-09 21:50 |
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Question on restraining receptor symmetry when docking ligand by subha » Fri, 2018-07-06 21:59 |
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1,056 |
by rmoretti Fri, 2018-08-03 08:16 |
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RosettaMatch by xingqing326 » Mon, 2019-07-22 13:14 |
1 |
1,230 |
by rmoretti Mon, 2019-08-26 12:57 |
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InterfaceAnalyzer -resfile by gw » Wed, 2011-11-02 16:01 |
1 |
2,416 |
by smlewis Mon, 2014-04-21 06:47 |
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Interface Analyzer Segmentation Fault by h_trasatti » Tue, 2017-02-21 12:48 |
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1,759 |
by smlewis Tue, 2017-02-21 14:10 |
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Warning: Fold tree is not set properly for density scoring by ahansel » Mon, 2020-07-13 10:50 |
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764 |
by danpf Tue, 2020-07-14 10:27 |
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cluster error by sudhar » Fri, 2011-06-17 05:58 |
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2,414 |
by rmoretti Mon, 2014-04-21 06:47 |
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Using different number of 9-mers (UPDATED) by JadAbbass » Mon, 2017-08-28 07:20 |
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1,417 |
by rmoretti Mon, 2017-09-04 10:33 |
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docking with capping groups by xavierfradera » Sun, 2018-11-04 16:17 |
1 |
1,031 |
by maral.adeli-kou... Wed, 2020-01-22 12:41 |
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Undesirable behaviour of PoseFromSFRBuilder regarding Hydrogen atoms by Corvin » Wed, 2020-12-02 04:00 |
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610 |
by rmoretti Wed, 2020-12-02 07:27 |
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Pre-packing a model for SWA loop building by franfdez » Sun, 2014-07-27 02:16 |
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2,422 |
by franfdez Mon, 2014-07-28 01:04 |
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PIKAA in resfile does not mutate Cys in disulfide bond to specified residue by attesor » Fri, 2014-03-14 07:53 |
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2,754 |
by attesor Mon, 2014-06-16 07:34 |
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Write error during saving of PDB-file after working with it in the Rosetta through Unix terminal by Corvin » Thu, 2019-04-25 01:20 |
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1,515 |
by Corvin Wed, 2019-06-12 00:04 |
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Segmentation Fault in Rosetta CM Hybridize by yliang20 » Mon, 2022-06-06 17:25 |
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102 |
by yliang20 Tue, 2022-06-07 08:36 |
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flexpepdock flag "-packing:unboundrot" by gw » Mon, 2011-07-11 12:23 |
2 |
3,319 |
by Ora Schueler-Furman Mon, 2014-04-21 06:47 |
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Symmetry definition for coiled-coil dimer and trimer by kszczepaniak » Fri, 2013-10-11 05:33 |
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5,058 |
by kszczepaniak Mon, 2014-04-21 06:48 |
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Use "loopmodel.linuxgccrelease" CCD to build missing residue positions by lanselibai » Sun, 2014-10-12 09:00 |
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2,804 |
by lanselibai Mon, 2014-10-13 10:10 |
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antibody modeling error by mxp » Mon, 2019-09-16 18:29 |
2 |
1,254 |
by mxp Mon, 2019-09-23 01:40 |
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Building loop extensions in a membrane protein with Remodel by benhardy » Tue, 2020-06-02 08:21 |
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1,311 |
by benhardy Sun, 2020-09-20 11:15 |
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Missing atoms and cannot find atom pose when refining ligand position with EM density by BuddySphinx » Mon, 2018-12-31 16:22 |
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2,230 |
by e3lm Tue, 2021-09-14 10:02 |
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A problem with "make_fragments.pl" script dependencies by Corvin » Fri, 2019-08-16 04:30 |
2 |
1,657 |
by Corvin Tue, 2019-08-27 00:46 |
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RMS determination using Rosetta 3.3 by adraney » Thu, 2011-12-08 12:44 |
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2,706 |
by mark.wilson Mon, 2014-04-21 06:47 |
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regarding extracting silent file - renamed tag by shrutikhare » Thu, 2014-04-17 01:19 |
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2,109 |
by shrutikhare Fri, 2014-04-18 23:11 |
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creating compound task mover by aaj » Wed, 2016-02-24 04:48 |
2 |
1,982 |
by aaj Wed, 2016-02-24 07:37 |
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Strong bias in sampling observed in RosettaDock by chenna » Thu, 2020-08-27 22:23 |
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910 |
by chenna Tue, 2021-10-12 20:51 |
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GrowLigand by allan.ferrari » Sat, 2019-10-19 05:32 |
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1,381 |
by allan.ferrari Tue, 2019-11-05 16:52 |
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kinematic loop modeling multiple input: possible? by a_s_a » Thu, 2011-05-12 09:33 |
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2,723 |
by a_s_a Mon, 2014-04-21 06:47 |
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RoseTTaFold by ozsolomon » Thu, 2021-10-07 05:27 |
2 |
755 |
by ozsolomon Thu, 2021-10-07 14:25 |
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Regarding the efficiency of the new low resolution ligand-docking movement “Transform”. by Martin Floor » Mon, 2017-05-15 09:19 |
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1,957 |
by Martin Floor Mon, 2017-05-15 11:13 |
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The question about ligand score function by asbelx » Sun, 2018-06-17 02:07 |
2 |
2,305 |
by asbelx Mon, 2018-06-18 22:34 |
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Number of max allowed mutations from WT sequence by mouung » Fri, 2020-09-04 02:33 |
2 |
1,030 |
by amorin Fri, 2021-02-12 08:53 |
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Problems running pmut in parallel with openmpi by RMJ » Fri, 2012-09-21 06:25 |
2 |
3,398 |
by RMJ Mon, 2014-04-21 06:47 |
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Syntax for python-based (.py) command line on cluster by lanselibai » Fri, 2014-11-14 09:32 |
2 |
4,498 |
by lanselibai Thu, 2014-11-20 02:15 |
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Error from clean_pdb.py by code_Monkey » Mon, 2021-03-01 17:00 |
2 |
700 |
by code_Monkey Thu, 2021-03-04 12:14 |
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refining crystal structure using phenix without CIF file by banshee » Fri, 2016-09-09 01:14 |
2 |
2,422 |
by banshee Mon, 2016-09-12 23:41 |
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Generate fragment locally by deltag » Wed, 2012-02-01 06:26 |
2 |
2,931 |
by deltag Mon, 2014-04-21 06:47 |
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select_best_unique_ligand_poses output by ast » Thu, 2013-07-11 02:33 |
2 |
2,735 |
by ast Mon, 2014-04-21 06:48 |
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Remodel: neighbor cutoff by felipet » Wed, 2014-07-16 08:11 |
2 |
2,093 |
by felipet Thu, 2014-07-17 10:13 |
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Total score problems with high-res ddg_monomer by jklesmith » Tue, 2015-03-10 15:54 |
2 |
2,814 |
by jennifer Fri, 2015-03-27 05:56 |
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KeyError: 'subject-id' in antibody modelling by bogac » Mon, 2017-03-06 02:00 |
2 |
2,296 |
by bogac Tue, 2017-03-07 02:11 |
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Membrane homology modeling loop building gives very strange outputs by chelsell » Tue, 2014-09-30 14:46 |
2 |
2,535 |
by chelsell Wed, 2014-10-08 12:25 |
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The usage of antibody_H3.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 22:50 |
2 |
1,133 |
by Sunyp_IM Thu, 2020-06-04 08:20 |
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getting a3m files by alonwenger » Wed, 2021-12-15 02:38 |
2 |
570 |
by alonwenger Sat, 2021-12-18 12:32 |
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How to eliminate "NUL"s when scoring PDBs? by lanselibai » Tue, 2014-10-14 10:04 |
2 |
2,355 |
by lanselibai Fri, 2014-10-17 03:36 |
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How to scan double mutations in RosettaScripts? by msardejani » Mon, 2016-12-12 16:52 |
2 |
1,857 |
by msardejani Mon, 2016-12-12 17:48 |
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FlexPepDock Concatenation by cam11 » Mon, 2014-08-11 07:39 |
2 |
2,206 |
by cam11 Wed, 2014-08-13 10:06 |
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does the loop kinetic support MPI now? by albumns » Fri, 2012-10-26 06:31 |
2 |
1,998 |
by smlewis Mon, 2014-04-21 06:47 |
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score_jd2.mpi.linuxgccrelease failed by fred » Wed, 2014-03-26 13:54 |
2 |
4,443 |
by fred Tue, 2014-04-01 08:24 |
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Homology Modeling-no PDB output by jlawrie » Wed, 2020-08-12 06:30 |
2 |
1,048 |
by jlawrie Wed, 2020-08-12 08:56 |
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