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Rosetta 3 - Applications

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Normal topic Small molecule dimer/trimer/etc docking
by lukasz » Tue, 2022-10-04 06:49
1
902 by rmoretti
Tue, 2022-10-04 07:57
Normal topic Representing Cross-linked nitrogens
by jjlee2 » Sat, 2011-11-26 18:42
1
2,138 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta_scripts error, Got some signal... It is:6
by jhm13c » Fri, 2017-04-14 14:05
1
1,706 by rmoretti
Sat, 2017-04-15 13:30
Normal topic Relax with multiple small molecules
by jharamesh » Sun, 2019-05-26 19:34
1
1,262 by rmoretti
Mon, 2019-06-24 15:19
Normal topic Ddg filter threshold value?
by chrisHKL » Fri, 2020-02-28 15:01
1
872 by rmoretti
Wed, 2020-03-04 09:56
Normal topic shape complementarity
by holdenj » Fri, 2022-07-15 13:24
1
232 by rmoretti
Fri, 2022-07-15 13:50
Normal topic Script for loop modeling: how to define loop sequence
by batch2k » Thu, 2014-10-30 12:58
1
1,859 by jadolfbr
Fri, 2014-10-31 08:45
Normal topic "install_dependencies.pl" script: an optimization of HDD space during nr-pfilt data extracting and formatting stage
by Corvin » Thu, 2019-10-10 02:20
1
1,082 by danpf
Thu, 2019-10-10 09:55
Normal topic How to select docked models
by Sunyp_IM » Mon, 2020-06-22 00:50
1
781 by ssrb
Mon, 2020-06-22 13:12
Normal topic Rosetta DNA - Protein-DNA scoring function and binding energy
by tanoramb » Tue, 2012-05-08 14:00
1
4,151 by smlewis
Mon, 2014-04-21 06:47
Normal topic antibody protocol fails
by hamedkhakzad » Mon, 2019-08-19 07:43
1
1,035 by smlewis
Tue, 2019-10-22 09:45
Normal topic interface_delta ligand_docking
by Prasanth Kumar » Tue, 2013-06-18 08:37
1
2,285 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Generating non-redundat dataset for loop models
by dario.corrada » Wed, 2016-03-09 03:00
1
1,548 by smlewis
Wed, 2016-03-09 04:11
Normal topic Model two domain protein
by sn » Sat, 2017-05-06 13:21
1
1,555 by rmoretti
Mon, 2017-05-15 08:54
Normal topic rosetta's keyword list
by fred » Tue, 2014-01-21 06:03
1
2,400 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Two questions on the RosettaScripts flexbb-interfacedesign.xml
by johnnytam100 » Fri, 2019-03-15 04:54
1
1,282 by rmoretti
Fri, 2019-03-29 09:58
Normal topic how to pick fragments for a transmembrane protein
by tevang » Mon, 2012-05-28 06:52
1
1,944 by tevang
Mon, 2014-04-21 06:47
Normal topic Error with FlexPepDock
by aloshbau » Sat, 2013-08-10 11:51
1
2,292 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Snugdock+ensembledock usage
by Anouk » Mon, 2014-09-22 08:09
1
2,601 by jadolfbr
Mon, 2014-10-20 13:42
Normal topic Should I trust the score output from relax used with a protein complex?
by cossio » Thu, 2015-05-07 06:08
1
1,794 by rmoretti
Mon, 2015-05-25 12:37
Normal topic C-termini remodelling of dimeric structure removes second chain
by LeonhardJS » Wed, 2021-10-13 06:23
1
543 by LeonhardJS
Fri, 2021-11-12 01:20
Normal topic homology membrane modeling demo in rosetta 3.5
by rlwoltz » Mon, 2013-09-09 10:26
1
2,566 by smlewis
Mon, 2014-04-21 06:48
Normal topic Syntax to extract PDB files from a silent file
by lanselibai » Fri, 2014-09-26 13:48
1
3,465 by lanselibai
Fri, 2014-09-26 14:58
Normal topic Using residue patches in AbinitioRelax
by kent » Fri, 2018-11-02 11:19
1
1,445 by rmoretti
Wed, 2018-11-21 15:40
Normal topic Difference between relax and mimimize_with_cst
by basvandenberg » Thu, 2012-02-09 00:16
1
2,448 by rmoretti
Mon, 2014-04-21 06:47
Normal topic membrane modeling error
by benniu2004 » Mon, 2013-07-01 17:59
1
2,177 by smlewis
Mon, 2014-04-21 06:48
Normal topic Failed glycine check when running RosettaRemodel to build disulfide
by cheyuk » Fri, 2014-06-27 02:31
1
1,815 by everyday847
Sun, 2014-09-28 21:16
Normal topic Design a peptide linked to small molecule ligand
by shaunmk » Mon, 2015-03-02 09:05
1
2,150 by rmoretti
Wed, 2015-03-25 12:39
Normal topic sequence design to enhance Fc / Fc-g Receptor binding
by jarod » Tue, 2017-05-23 09:00
1
1,386 by jadolfbr
Thu, 2017-06-01 10:00
Normal topic contents of span file
by tevang » Mon, 2013-04-15 05:01
1
2,241 by smlewis
Mon, 2014-04-21 06:47
Normal topic heads up for constraints using GAUSSIANFUNC
by attesor » Thu, 2015-10-22 07:30
1
1,595 by smlewis
Thu, 2015-10-22 08:04
Normal topic Docking prepack vs. relax
by David Weis » Tue, 2017-02-21 05:37
1
1,618 by smlewis
Tue, 2017-02-21 07:58
Normal topic PEPSPEC
by Neeraj » Wed, 2018-01-03 02:24
1
1,353 by Andre Serobian
Wed, 2020-07-08 04:44
Normal topic Docking structures with ligands in cryo-EM maps
by galushin » Wed, 2012-07-11 12:40
1
4,164 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Full Protocol
by shekhar » Fri, 2013-10-04 01:07
1
2,702 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Docking with loop rebuilding
by kxiao » Sun, 2015-06-28 19:37
1
1,834 by rmoretti
Fri, 2015-07-03 14:41
Normal topic Ddg_monomer: implementing disulfides
by kabol » Wed, 2016-11-30 02:39
1
1,904 by rmoretti
Wed, 2016-11-30 07:46
Normal topic docking parse error
by dave » Tue, 2018-12-04 08:41
1
1,502 by rmoretti
Tue, 2018-12-04 08:55
Normal topic ERROR: APBS failed to generate the result file.
by bhavranek » Sat, 2021-12-18 11:01
1
488 by bhavranek
Sun, 2021-12-26 21:05
Normal topic FASTA for Octopus
by Smbat » Wed, 2020-09-16 05:40
1
1,015 by rmoretti
Wed, 2020-09-16 22:11
Normal topic Unsatisfied interface H-bond in Ligand docking
by Prasanth Kumar » Thu, 2013-07-18 12:04
1
3,734 by rmoretti
Mon, 2014-04-21 06:48
Normal topic relax job failed
by albumns » Sat, 2014-07-26 00:21
1
1,791 by rmoretti
Sun, 2014-07-27 10:48
Normal topic rosetta scores for mutated structures
by harshkhare » Wed, 2011-11-23 09:30
1
2,433 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Options for Enzdes RosettaScripts
by joeg » Wed, 2014-03-12 09:28
1
2,499 by rmoretti
Thu, 2014-03-13 08:04
Normal topic Segmentation fault when running Abinito Relax
by Hongtham » Mon, 2014-12-15 07:16
1
2,754 by rmoretti
Fri, 2015-01-02 11:45
Normal topic Protein/Protein Ddg demo: How to write predicted mutant structures?
by cossio » Wed, 2015-11-04 20:14
1
1,600 by rmoretti
Tue, 2015-11-10 11:10
Normal topic running structure prediction with robetta server like automation
by dhirajks » Mon, 2018-01-29 21:32
1
1,704 by rmoretti
Tue, 2018-01-30 07:51
Normal topic Highly negative total score
by Ruchi_P_Jain » Wed, 2019-04-24 19:55
1
1,265 by nannemdp
Thu, 2019-04-25 07:58
Normal topic mpirun docking_protocol
by NanB » Mon, 2020-08-03 11:38
1
1,995 by ssrb
Fri, 2020-08-14 09:18
Normal topic CartesianRefiner compilation problem
by DmitriiN » Tue, 2015-12-15 08:52
1
1,685 by rmoretti
Tue, 2015-12-15 09:48
Normal topic Modeling-Using RosettaCM
by jlawrie » Wed, 2020-08-12 08:46
1
746 by jlawrie
Wed, 2020-08-12 08:47
Normal topic restrain residues in docking
by albumns » Sat, 2013-11-02 08:52
1
2,305 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic autoNOE peak lists
by aep » Thu, 2015-08-06 06:15
1
1,830 by sgourn
Tue, 2015-08-18 18:25
Normal topic UnfoldedStateEnergyCalculator MPI Error
by colin.walsh.brown » Mon, 2017-11-13 09:43
1
1,511 by smlewis
Mon, 2017-11-13 10:43
Normal topic Energy function and iteration script files
by michelleqyh » Fri, 2019-09-27 09:06
1
922 by smlewis
Fri, 2019-09-27 11:54
Normal topic protein-protein docking
by cbala » Mon, 2011-04-18 09:15
1
2,267 by smlewis
Mon, 2014-04-21 06:47
Normal topic How does the label in pdb files looks like when using ResiduePDBInfoHasLabel?
by johnnytam100 » Fri, 2019-08-16 00:25
1
1,279 by JackMaguire
Fri, 2019-08-16 07:41
Normal topic Input structure
by Soler » Mon, 2020-09-28 13:18
1
749 by ssrb
Tue, 2020-09-29 12:37
Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
1
2,647 by jharamesh
Mon, 2014-11-03 12:50
Normal topic Fast relax not working
by eyong123 » Fri, 2017-04-21 06:06
1
1,585 by rmoretti
Fri, 2017-04-21 07:41
Normal topic AddHelixSequenceConstraints Mover2
by Negarsardar » Sat, 2019-06-01 01:54
1
1,032 by vmulligan
Thu, 2019-06-13 15:01
Normal topic protein-protein docking with flexible backbone
by tim » Fri, 2013-12-20 05:52
1
3,943 by rmoretti
Mon, 2014-04-21 06:48
Normal topic "Segmentation fault" for "minirosetta.linuxgccrelease"
by lanselibai » Tue, 2014-11-04 03:17
1
2,417 by rmoretti
Tue, 2014-11-04 08:53
Normal topic ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease
by cossio » Thu, 2015-09-03 08:46
1
2,636 by rmoretti
Fri, 2015-09-04 10:25
Normal topic output file in ddg calcualtion
by malkeet.singh » Sun, 2017-12-03 07:59
1
1,236 by malkeet.singh
Wed, 2017-12-06 02:02
Normal topic Unexpected Error with RosettaCM -
by terry » Fri, 2019-02-22 14:26
1
2,734 by rmoretti
Fri, 2019-03-29 12:25
Normal topic modeling missing linker in a protein
by Isaure de Beauchene » Fri, 2012-05-11 10:13
1
3,063 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem in using "loopmodel" application to add missing residues
by sushreet » Wed, 2014-08-27 12:43
1
1,714 by rmoretti
Thu, 2014-08-28 09:42
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Wed, 2016-07-06 10:35
1
1,719 by rmoretti
Tue, 2016-07-12 08:56
Normal topic Question on Designing with NCAAs
by salvatta » Mon, 2018-09-10 10:09
1
1,277 by rmoretti
Thu, 2018-09-20 09:23
Normal topic Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively?
by johnnytam100 » Fri, 2019-08-23 21:10
1
970 by rmoretti
Mon, 2019-08-26 12:03
Normal topic trRosetta - Nan occuring in Hbond calculation
by y_atsmonraz » Mon, 2021-10-04 09:16
1
480 by shivarawat115
Mon, 2022-04-11 16:10
Normal topic Using Rmsd RosettaScripts filter with alignment files
by bjharris » Sun, 2020-11-08 15:51
1
734 by rmoretti
Sun, 2020-11-08 18:56
Normal topic connecting rna strands together
by y_atsmonraz » Tue, 2021-11-09 05:42
1
474 by y_atsmonraz
Thu, 2021-11-11 04:51
Normal topic loopmodel issue
by chiendarret » Fri, 2012-01-27 00:51
1
2,731 by smlewis
Mon, 2014-04-21 06:47
Normal topic BuildPeptide - Using Phosphorylated and Sulfated Tyrosine
by jlawrie » Thu, 2020-09-03 14:29
1
948 by cryosky
Mon, 2021-03-01 21:37
Normal topic Symmetry-aware Backrub?
by gamacy » Fri, 2014-11-14 02:18
1
1,823 by rmoretti
Tue, 2014-11-18 09:10
Normal topic Protein Design
by ac.research » Wed, 2017-02-15 19:25
1
2,376 by cdbahl
Sat, 2017-02-18 13:02
Normal topic Abinitio the Broker protocol
by ac.research » Sun, 2019-03-24 03:56
1
1,156 by rmoretti
Fri, 2019-04-05 00:18
Normal topic Issue with Rosetta LinkResidues Script
by adityapadhi » Wed, 2019-11-20 22:00
1
1,013 by JackMaguire
Fri, 2019-11-22 13:45
Normal topic loop modeling scoring
by Nicky_Learning_... » Wed, 2015-05-13 20:00
1
2,348 by rmoretti
Mon, 2015-05-25 11:30
Normal topic Resfile as a input for InterfaceAnalyzer
by palak8669 » Sun, 2015-06-07 21:46
1
1,690 by smlewis
Mon, 2015-06-08 06:35
Normal topic Problem in redesign binding site
by armart999 » Fri, 2016-10-14 01:55
1
1,936 by rmoretti
Fri, 2016-10-14 08:42
Normal topic Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2
by AJVincelli » Sat, 2018-07-14 13:14
1
1,495 by AJVincelli
Sun, 2018-11-25 11:29
Normal topic Checkpoint with rosetta3.4
by AmelieH » Mon, 2014-12-01 15:51
1
2,162 by rmoretti
Wed, 2014-12-03 19:07
Normal topic Protein Protein Docking with Constraints
by ajaniharesh » Wed, 2019-04-10 07:26
1
1,218 by rmoretti
Thu, 2019-05-09 15:40
Normal topic Different scoring applications (score vs score_aln vs score_jd2, etc.)?
by cossio » Fri, 2014-12-26 07:19
2
3,124 by cossio
Tue, 2015-01-20 06:40
Normal topic RosettaScripts - FastRelax loops
by jtmacd » Wed, 2015-11-18 09:32
2
3,542 by jtmacd
Fri, 2015-12-04 03:11
Normal topic Relax structure with metal cofactors
by h_trasatti » Tue, 2017-03-14 14:04
2
2,440 by rmoretti
Tue, 2017-03-28 08:51
Normal topic Choosing weight file for interface design?
by johnnytam100 » Tue, 2019-05-07 00:47
2
1,607 by johnnytam100
Tue, 2019-05-21 22:33
Normal topic how to know the precedure of solving a actural bio problem? like interface design?
by qq7678500549 » Thu, 2020-08-06 18:45
2
1,047 by qq7678500549
Sun, 2020-08-09 18:59
Normal topic MaxSub and MaxSub2.0
by JadAbbass » Tue, 2013-10-15 13:36
2
3,151 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic Including ab-initio predicted model in fragment library generation
by ashu4487 » Thu, 2016-12-08 17:49
2
1,936 by ashu4487
Sun, 2016-12-11 19:03
Normal topic rosetta_cm segfault
by browns02 » Fri, 2021-07-09 13:35
2
788 by rmoretti
Fri, 2021-07-09 15:05
Normal topic limit_cluster_size default value
by sacch » Thu, 2011-11-24 17:57
2
2,463 by sacch
Mon, 2014-04-21 06:47
Normal topic ddG filter gives deltaG calculation number?
by jarod » Tue, 2013-05-28 23:43
2
3,432 by jarod
Mon, 2014-04-21 06:47
Normal topic Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved]
by loreseeker » Wed, 2011-09-14 08:13
2
3,180 by loreseeker
Mon, 2014-04-21 06:47
Normal topic Abinitio protocol and X-Ray diffraction data
by allan.ferrari » Wed, 2015-08-12 12:49
2
2,451 by allan.ferrari
Fri, 2015-08-28 12:07
Normal topic How to create a native file for Protein-Protein docking
by Kotimedidhi » Fri, 2020-06-19 08:58
2
1,181 by Kotimedidhi
Mon, 2020-06-22 16:19
Normal topic flexpep docking, select the decoy to do the further docking, questions
by michael_luntan » Fri, 2011-04-22 04:43
2
3,067 by michael_luntan
Mon, 2014-04-21 06:47
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